ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV0976 good A KOG3428 RNA processing and modification Small nuclear ribonucleoprotein SMD1 and related snRNPs
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV0976 321716 322138 141
(141 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR074w [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and rel... 158 2e-39
SPAC27D7.07c [A] KOG3428 Small nuclear ribonucleoprotein SMD1 an... 75 2e-14
At4g02840 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and r... 74 6e-14
7294552 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and rel... 73 1e-13
At3g07590 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and r... 72 2e-13
Hs5902102 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and r... 72 3e-13
CE02065 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and rel... 68 3e-12
>YGR074w [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 146
Score = 158 bits (400), Expect = 2e-39
Identities = 82/145 (56%), Positives = 109/145 (74%), Gaps = 7/145 (4%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPT------KTSEA 54
M+L FLKKL+NE+V+IELKNGTTVWG ++SVSPQMN LTDV+LTLP ++
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGI 60
Query: 55 TLAAVLLSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQQEVNRLRKQ 114
+A++ L+GG Q S SL++INIRGNTIRQIILPDS+NLD+LLVDQ+++N LR+
Sbjct: 61 AMASLYLTGGQ-QPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLNSLRRS 119
Query: 115 GKVGSDPNKKRSLESNGNAPKRPKR 139
G++ +DP+KKR + A KRP+R
Sbjct: 120 GQIANDPSKKRRRDFGAPANKRPRR 144
>SPAC27D7.07c [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 117
Score = 75.5 bits (184), Expect = 2e-14
Identities = 50/137 (36%), Positives = 66/137 (47%), Gaps = 23/137 (16%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
M+L FL KL NE VSIELKNGT V G + SV QMN L V++T+
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTV------------- 47
Query: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQQEVNRLRKQGKV-GS 119
+ + +E ++IRGN IR ILPDS+ LD LL+D + +K+ V G
Sbjct: 48 ---------KGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKKKEVVRGR 98
Query: 120 DPNKKRSLESNGNAPKR 136
+ R G R
Sbjct: 99 GRGRGRGTRGRGRGASR 115
>At4g02840 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 116
Score = 73.9 bits (180), Expect = 6e-14
Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 22/104 (21%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
M+L FL KL NE VSIELKNGT V G + V MN L V+LTL
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTL------------- 47
Query: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVD 104
+ K +L+ +++RGN IR ILPDS+NL+ LLV+
Sbjct: 48 ---------KGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE 82
>7294552 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 124
Score = 72.8 bits (177), Expect = 1e-13
Identities = 48/138 (34%), Positives = 70/138 (49%), Gaps = 27/138 (19%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
M+L FL KL +E V+IELKNGT + G + V MN L VR+T+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTI------------- 47
Query: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQQEVNRLRKQ--GKVG 118
+++ LE ++IRGN IR ILPDS+ L+ LL+D ++ +K+ G+VG
Sbjct: 48 ---------KNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGRVG 98
Query: 119 SDPNKKRSLESNGNAPKR 136
N+ R + G R
Sbjct: 99 ---NRGRGRGARGRGGPR 113
>At3g07590 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 114
Score = 72.0 bits (175), Expect = 2e-13
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 22/104 (21%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
M+L FL KL NE VSIELKNGT V G + V MN L V+++L
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSL------------- 47
Query: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVD 104
+ K +L+ +++RGN IR ILPDS+NL+ LLV+
Sbjct: 48 ---------KGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVE 82
>Hs5902102 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 119
Score = 71.6 bits (174), Expect = 3e-13
Identities = 45/117 (38%), Positives = 61/117 (51%), Gaps = 22/117 (18%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
M+L FL KL +E V+IELKNGT V G + V MN L V++TL
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTL------------- 47
Query: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQQEVNRLRKQGKV 117
+++ LE ++IRGN IR ILPDS+ LD LLVD + + +K+ V
Sbjct: 48 ---------KNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAV 95
>CE02065 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs
Length = 126
Score = 68.2 bits (165), Expect = 3e-12
Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 22/112 (19%)
Query: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
M+L FL KL +E V+IELKNGT V G + V MN L V +T+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTV------------- 47
Query: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQQEVNRLR 112
++K L+ ++IRGN IR IILPD + LD LL+D + + R
Sbjct: 48 ---------KNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKAR 90
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.130 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,583,851
Number of Sequences: 60738
Number of extensions: 262407
Number of successful extensions: 713
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 7
length of query: 141
length of database: 30,389,216
effective HSP length: 95
effective length of query: 46
effective length of database: 24,619,106
effective search space: 1132478876
effective search space used: 1132478876
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)