ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV1014   good          C     KOG3477  Energy production and conversion                               Putative cytochrome c oxidase, subunit COX19

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1014 334691  334987 99   
         (99 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLL018c-a [C] KOG3477 Putative cytochrome c oxidase subunit COX19     143   5e-35
SPCC1672.04c [C] KOG3477 Putative cytochrome c oxidase subunit C...    92   2e-19
CE27165 [C] KOG3477 Putative cytochrome c oxidase subunit COX19        71   2e-13
At1g69750 [C] KOG3477 Putative cytochrome c oxidase subunit COX19      69   8e-13
At1g66590 [C] KOG3477 Putative cytochrome c oxidase subunit COX19      69   8e-13

>YLL018c-a [C] KOG3477 Putative cytochrome c oxidase subunit COX19
          Length = 98

 Score =  143 bits (360), Expect = 5e-35
 Identities = 64/90 (71%), Positives = 74/90 (82%)

Query: 1  MSANPGNSLKALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYL 60
          MS NPG+SL AL PTPPERGSFPLDHDG+CTK MQEYL C++LV+ ENA NCRLLAK+YL
Sbjct: 1  MSGNPGSSLSALRPTPPERGSFPLDHDGECTKYMQEYLKCMQLVQNENAMNCRLLAKDYL 60

Query: 61 KCRMDNKLMDRDDWKHLGLPSDKKEANDVT 90
          +CRMD++LMD D+W HLGLP D    N  T
Sbjct: 61 RCRMDHQLMDYDEWSHLGLPEDAPGNNGKT 90


>SPCC1672.04c [C] KOG3477 Putative cytochrome c oxidase subunit COX19
          Length = 101

 Score = 91.7 bits (226), Expect = 2e-19
 Identities = 43/68 (63%), Positives = 51/68 (74%), Gaps = 1/68 (1%)

Query: 16 PPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMDNKLMDRDDWK 75
          PPERGSFPLDH G+CT  M++YL CIK VK EN   CRLLAK+YL+CRMD  L  +DD K
Sbjct: 6  PPERGSFPLDHFGECTHVMKQYLECIK-VKRENQEECRLLAKKYLQCRMDTGLFGKDDMK 64

Query: 76 HLGLPSDK 83
          +LG   D+
Sbjct: 65 NLGFHGDE 72


>CE27165 [C] KOG3477 Putative cytochrome c oxidase subunit COX19
          Length = 85

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 6  GNSLKALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMD 65
          G  ++  + + P +GSFPLDH+G C  +M  Y+ C+   K +N+  CR  AK+Y +CRM+
Sbjct: 5  GPFIRVTTVSAPLKGSFPLDHEGTCKLEMLNYMVCLHEKKQQNS-ECRSTAKDYFECRMN 63

Query: 66 NKLMDRDDWKHLGLPSDKK 84
          + LMD+++W+ LG    K+
Sbjct: 64 HGLMDKEEWQKLGYGDAKQ 82


>At1g69750 [C] KOG3477 Putative cytochrome c oxidase subunit COX19
          Length = 98

 Score = 69.3 bits (168), Expect = 8e-13
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 10 KALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMDNKLM 69
          + L P PPE+G FPLDH  +C  + +EYL C+K      +  CR L+K+YL+CRM   LM
Sbjct: 11 RGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLK-SSAHKSEQCRHLSKKYLQCRMAKNLM 69

Query: 70 DRDDWKHLGLPSDKKEANDVTKET 93
           + D   LG    K+  +   K T
Sbjct: 70 AKQDMAELGFSGVKELDSTEDKNT 93


>At1g66590 [C] KOG3477 Putative cytochrome c oxidase subunit COX19
          Length = 135

 Score = 69.3 bits (168), Expect = 8e-13
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 10  KALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMDNKLM 69
           + L P PPE+G FPLDH  +C  + +EYL C+K      +  CR L+K+YL+CRM   LM
Sbjct: 48  RGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLK-SSAHKSEQCRHLSKKYLQCRMAKNLM 106

Query: 70  DRDDWKHLGLPSDKKEANDVTKET 93
            + D   LG    K+  +   K T
Sbjct: 107 AKQDMAELGFSGVKELDSTEDKNT 130


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,545,184
Number of Sequences: 60738
Number of extensions: 308240
Number of successful extensions: 504
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 30,389,216
effective HSP length: 75
effective length of query: 24
effective length of database: 25,833,866
effective search space: 620012784
effective search space used: 620012784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)