ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1069 good BD KOG4563 Cell cycle control, cell division, chromosome partitioning Cell cycle-regulated histone H1-binding protein
r_klactIV1069 good BD KOG4563 Chromatin structure and dynamics Cell cycle-regulated histone H1-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1069 350976 352121 382
(382 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.15c [BD] KOG4563 Cell cycle-regulated histone H1-binding... 121 2e-27
Hs4505333 [BD] KOG4563 Cell cycle-regulated histone H1-binding p... 77 4e-14
Hs14721309 [BD] KOG4563 Cell cycle-regulated histone H1-binding ... 77 6e-14
CE03007 [BD] KOG4563 Cell cycle-regulated histone H1-binding pro... 51 2e-06
>SPBC577.15c [BD] KOG4563 Cell cycle-regulated histone H1-binding protein
Length = 396
Score = 121 bits (304), Expect = 2e-27
Identities = 100/379 (26%), Positives = 161/379 (42%), Gaps = 48/379 (12%)
Query: 26 SKMSDKFDKLLTEGAKHYAGKNYELAVDSYADL----NQLYDSEN-ENPNPEYLFLYGKA 80
S S ++L+T+G YA KNYE AVD Y ++ SE+ EN N L+LYGK+
Sbjct: 26 SSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIHGSESLENRN--VLWLYGKS 83
Query: 81 LYQLALSRSDVFGMGSNVKRDEHNEEQDEDDSASKGPGLIQFXXXXXXXXXXXXXXXXXX 140
L+Q+A+ S V G K + ++ + G
Sbjct: 84 LFQIAIENSQVLGNALGAKESVSQATESFEEPEAIG---------------SFTFSGQKI 128
Query: 141 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFENAWEILELARSYYESSLKET 200
F AWE+L+L R ++
Sbjct: 129 ENKYTVNEENSSIAHPEKESEEKETNEASPASEEDEDDFNVAWEVLDLTRVMQSKAVDAY 188
Query: 201 PDNEDLKLKLSECYDLLGEVSLECENFSQASHDFEECLKLRRELFETKDPIDRSIIESYY 260
PD++D K++L++ YDLLGE+SLE ENFSQAS D + L+ + +++ + + + E++Y
Sbjct: 189 PDSKDEKIRLADIYDLLGELSLEIENFSQASQDLKTALEWKEKVYNVSN--NTLLSEAHY 246
Query: 261 KISLALEF----DPDQFKKCTSNLQKCIELLKQRCKTVDKEDEDQKDL------------ 304
K++LALEF DP + +++K E+LK + E D+K
Sbjct: 247 KLALALEFTNPEDPSNKSRACEHVEKAAEILKNVLNERENEVTDKKGKGKQKAEESTLTS 306
Query: 305 -LNELQTKLKELEESEAQMQ----SLKNDLLSTIHXXXXXXXXXXXXXXXXNEA--PVND 357
L L+ L ELE+ ++ SL+ ++S +H EA ND
Sbjct: 307 DLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMHESSLLSKDSSSLAQAVAEAVKNAND 366
Query: 358 LTSMVK-KRKSNDISESAE 375
L +VK KR +++ S++
Sbjct: 367 LGGLVKRKRTKQEVTSSSQ 385
>Hs4505333 [BD] KOG4563 Cell cycle-regulated histone H1-binding protein
Length = 787
Score = 77.0 bits (188), Expect = 4e-14
Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 36/229 (15%)
Query: 180 ENAWEILELARSYYESSLKETPDNEDLKLKLSECYDLLGEVSLECENFSQASHDFEECLK 239
E AW++L+LA+ ++ + ++ +L ++ + LGEVS+E EN+ QA +F+ CL
Sbjct: 516 ELAWDMLDLAKIIFKRQ-----ETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLN 570
Query: 240 LRRELFETKDPIDRSIIESYYKISLALEFDPDQFKKCTSNLQKCIELLKQRCKTVD---- 295
L+ + E DR + E++Y++ LA ++ Q+ + + K IE+++ R ++
Sbjct: 571 LQEQYLEAH---DRLLAETHYQLGLAYGYN-SQYDEAVAQFSKSIEVIENRMAVLNEQVK 626
Query: 296 ---------KEDEDQKDLLNELQTKLKELEESEAQMQ----SLKNDLLSTIHXXXXXXXX 342
KE E+ K+LL E++ K+++ +ES+ +LK L+ +
Sbjct: 627 EAEGSSEYKKEIEELKELLPEIREKIEDAKESQRSGNVAELALKATLVESSTSGFTPGGG 686
Query: 343 XXXXXXXXNEAP---------VNDLTSMV-KKRKSNDISESAETSKKAK 381
+ P V D++ +V KKRK + S + +KKAK
Sbjct: 687 GSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAK 735
>Hs14721309 [BD] KOG4563 Cell cycle-regulated histone H1-binding protein
Length = 788
Score = 76.6 bits (187), Expect = 6e-14
Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 37/230 (16%)
Query: 180 ENAWEILELARSYYESSLKETPDNEDLKLKLSECYDLLGEVSLECENFSQASHDFEECLK 239
E AW++L+LA+ ++ + ++ +L ++ + LGEVS+E EN+ QA +F+ CL
Sbjct: 516 ELAWDMLDLAKIIFKRQ-----ETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLN 570
Query: 240 LRRELFETKDPIDRSIIESYYKISLALEFDPDQFKKCTSNLQKCIELLKQRCKTVD---- 295
L+ + E DR + E++Y++ LA ++ Q+ + + K IE+++ R ++
Sbjct: 571 LQEQYLEAH---DRLLAETHYQLGLAYGYN-SQYDEAVAQFSKSIEVIENRMAVLNEQVK 626
Query: 296 ----------KEDEDQKDLLNELQTKLKELEESEAQMQ----SLKNDLLSTIHXXXXXXX 341
KE E+ K+LL E++ K+++ +ES+ +LK L+ +
Sbjct: 627 EAEGSSAEYKKEIEELKELLPEIREKIEDAKESQRSGNVAELALKATLVESSTSGFTPGG 686
Query: 342 XXXXXXXXXNEAP---------VNDLTSMV-KKRKSNDISESAETSKKAK 381
+ P V D++ +V KKRK + S + +KKAK
Sbjct: 687 GGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAK 736
>CE03007 [BD] KOG4563 Cell cycle-regulated histone H1-binding protein
Length = 382
Score = 51.2 bits (121), Expect = 2e-06
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 32/226 (14%)
Query: 182 AWEILELARSYYESSLKETPDN-------EDLKLKLSECYDLLGEVSLECENFSQASHDF 234
+WEILE AR + ++ E+ LKL++ LLGE + ++QA D
Sbjct: 155 SWEILETARCIAAAKIEALEAEQSGISAIEEWNLKLADVLVLLGEHGISDGKYTQAFEDL 214
Query: 235 EECLKLRRELFETKDPIDRSIIESYYKISLALEFDPDQFKKCTSNLQKCIELLKQRCKTV 294
+ L ++R + P R I ++Y I A D + + + K ++L R +
Sbjct: 215 DRALNIQRNVL---PPSSRKIAQTYILIGNACASDAN-YDETVQYFGKTKDVLIARQTEL 270
Query: 295 DKEDE---DQKDLLNELQTKLKELEE--------------SEAQMQSLKNDLLSTIHXXX 337
E E D K+ +E + +LKELEE S AQ++ K + +
Sbjct: 271 KHELERGVDDKEKKSEFENELKELEEMMPGVEEMIADAVHSAAQVEETKKAIKAQFEGFT 330
Query: 338 XXXXXXXXXXXXXNEAPVNDLTSMVKK--RKSNDISESAETSKKAK 381
EA ND++S+V++ +++ D + KK K
Sbjct: 331 QVLAKLPQEAGDQKEA--NDISSLVRRPAKRAVDAPTDNQAVKKEK 374
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.129 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,814,882
Number of Sequences: 60738
Number of extensions: 757442
Number of successful extensions: 4130
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4116
Number of HSP's gapped (non-prelim): 11
length of query: 382
length of database: 30,389,216
effective HSP length: 108
effective length of query: 274
effective length of database: 23,829,512
effective search space: 6529286288
effective search space used: 6529286288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)