ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV1104.2   suspect: LH  C     KOG2759   Energy production and conversion                               Vacuolar H+-ATPase V1 sector, subunit H

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1104.2 364406 364236 -57  
         (57 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE07497 [C] KOG2759 Vacuolar H+-ATPase V1 sector subunit H             27   6.9  
SPCC553.08c [J] KOG0467 Translation elongation factor 2/ribosome...    26   9.0  

>CE07497 [C] KOG2759 Vacuolar H+-ATPase V1 sector subunit H
          Length = 470

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 26  TTQIEDQDVLFAFIFLVQTVSNGSSGRFVN 55
           TT++E QD+ + F FL + + N ++  ++N
Sbjct: 157 TTRMEGQDLQYYFSFLKEQLKNSTTNDYMN 186


>SPCC553.08c [J] KOG0467 Translation elongation factor 2/ribosome biogenesis
           protein RIA1 and related proteins
          Length = 1000

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 13/40 (32%), Positives = 26/40 (64%), Gaps = 3/40 (7%)

Query: 2   SVTSG--SLNFEDTVFNGQQGDIEGTTTQI-EDQDVLFAF 38
           S+ SG  +++ E+ V +    ++EG+TT + +D+D+L  F
Sbjct: 432 SIESGINTISIEENVSSTNSDNLEGSTTDMDDDKDILIGF 471


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,055,540
Number of Sequences: 60738
Number of extensions: 86681
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 30,389,216
effective HSP length: 33
effective length of query: 24
effective length of database: 28,384,862
effective search space: 681236688
effective search space used: 681236688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)