ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1233 good J KOG2529 Translation, ribosomal structure and biogenesis Pseudouridine synthase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1233 409305 410726 474
(474 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR175w [J] KOG2529 Pseudouridine synthase 711 0.0
SPAC29A4.04c [J] KOG2529 Pseudouridine synthase 610 e-174
At3g57150 [J] KOG2529 Pseudouridine synthase 551 e-157
Hs4503337 [J] KOG2529 Pseudouridine synthase 541 e-154
7291757 [J] KOG2529 Pseudouridine synthase 527 e-149
CE16195 [J] KOG2529 Pseudouridine synthase 509 e-144
ECU05g1020 [J] KOG2529 Pseudouridine synthase 380 e-105
At5g14460 [J] KOG2529 Pseudouridine synthase 84 5e-16
Hs21040257 [J] KOG2529 Pseudouridine synthase 57 5e-08
>YLR175w [J] KOG2529 Pseudouridine synthase
Length = 483
Score = 711 bits (1836), Expect = 0.0
Identities = 350/399 (87%), Positives = 371/399 (92%)
Query: 3 DEFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVIN 62
++FVIKPE+ S++TSEWPLLLK++DKLLVRSGHYTPIPAG+SPLKRDLKSYISSGVIN
Sbjct: 4 EDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVIN 63
Query: 63 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEY 122
LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQGAGKEY
Sbjct: 64 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEY 123
Query: 123 VCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNL 182
VCIVRLHDALKDEK+LGR LENLTGALFQRPPLISAVKRQLRVRTIY+SNLIEFDNKRNL
Sbjct: 124 VCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRNL 183
Query: 183 GVFWASCEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVY 242
GVFWASCEAGTYMRT QELRRVRSGALSENDN+VTLHDVMDAQWVY
Sbjct: 184 GVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVY 243
Query: 243 DNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEV 302
DNTRDESYLR IIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE+
Sbjct: 244 DNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEI 303
Query: 303 VLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMK 362
VLITTKGEAIAVAIAQMSTVDLA+CDHGVVA VKRCIMERDLYPRRWGLGP+AQKKKQMK
Sbjct: 304 VLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMK 363
Query: 363 ADGKLDKYGRANENTPETWKKTYVSLENAEPTTAPASKS 401
ADGKLDKYGR NENTPE WKK YV L+NAE +T+ + ++
Sbjct: 364 ADGKLDKYGRVNENTPEQWKKEYVPLDNAEQSTSSSQET 402
>SPAC29A4.04c [J] KOG2529 Pseudouridine synthase
Length = 474
Score = 610 bits (1573), Expect = e-174
Identities = 297/404 (73%), Positives = 346/404 (85%), Gaps = 8/404 (1%)
Query: 4 EFVIKPESVSPSS-NTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVIN 62
+F+IKPE+ S S +T+EWPLLLK++DKLLVR+GHYTPIP G +PLKR + Y+SSGVIN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 63 LDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEY 122
LDKP+NPSSHEVVAW+K+ILR EKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 123 VCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNL 182
VC++RLHD+++ E+ + +E LTGALFQRPPLISAVKRQLR+R+IY+S LIEFDN+RNL
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188
Query: 183 GVFWASCEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVY 242
VFWASCEAGTYMRT QELRRVRSG LSEND++VT+HDV+DAQW+Y
Sbjct: 189 AVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIY 248
Query: 243 DNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEV 302
DNTRDESYLR++I+PLE+LLVGYKRIVVKDSAVNA+CYGAKLMIPGLLRYE GIE+ +E+
Sbjct: 249 DNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEI 308
Query: 303 VLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMK 362
VLITTKGEAIAV IAQMSTV+L+TCDHGVVAKVKRCIMERD+YPRRWGLGP + KKK +K
Sbjct: 309 VLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLK 368
Query: 363 ADGKLDKYGRANENTPETWKKTYV--SLENAE-----PTTAPAS 399
+GKLDKYGR NENTP W K+Y+ S NAE P APA+
Sbjct: 369 KEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAA 412
>At3g57150 [J] KOG2529 Pseudouridine synthase
Length = 565
Score = 551 bits (1421), Expect = e-157
Identities = 266/383 (69%), Positives = 319/383 (82%)
Query: 4 EFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINL 63
+++IKP+S +P+ +TS+WP+LLK+YD+L VR+GHYTPI AG SPLKR L+ YI GVINL
Sbjct: 26 DYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINL 85
Query: 64 DKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYV 123
DKP+NPSSHEVVAWIKRILR EKTGHSGTLDPKVTG LIVC+DRATRLVKSQQGAGKEYV
Sbjct: 86 DKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYV 145
Query: 124 CIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLG 183
C+ RLH A+ D ++ R LE+LTGA+FQRPPLISAVKRQLR+RTIY+S L+E+D R+L
Sbjct: 146 CVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLV 205
Query: 184 VFWASCEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVYD 243
VFW SCEAGTY+RT QELRRVRSG L EN+N+VT+HDVMDAQ+VYD
Sbjct: 206 VFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYD 265
Query: 244 NTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVV 303
N+RDESYLR++I PLE +L YKR+VVKDSAVNA+CYGAKLMIPGLLR+E I++ EVV
Sbjct: 266 NSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVV 325
Query: 304 LITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMKA 363
L+TTKGEAIAV IA+M+T +ATCDHGVVAK+KR +M+RD YPR+WGLGP A KK++ A
Sbjct: 326 LMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIA 385
Query: 364 DGKLDKYGRANENTPETWKKTYV 386
DGKLDK+G+ NE TP W + V
Sbjct: 386 DGKLDKHGKPNEKTPVEWSRNVV 408
>Hs4503337 [J] KOG2529 Pseudouridine synthase
Length = 514
Score = 541 bits (1394), Expect = e-154
Identities = 256/385 (66%), Positives = 318/385 (82%)
Query: 2 SDEFVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVI 61
++EF+IKPES +TS+WPLLLK++DKL VR+ HYTP+ G++PLKR++ YI +G I
Sbjct: 33 AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92
Query: 62 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKE 121
NLDKPSNPSSHEVVAWI+RILR EKTGHSGTLDPKVTGCLIVC++RATRLVKSQQ AGKE
Sbjct: 93 NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152
Query: 122 YVCIVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRN 181
YV IVRLH+A++ +L R LE LTGALFQRPPLI+AVKRQLRVRTIY+S +IE+D +R
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212
Query: 182 LGVFWASCEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWV 241
LG+FW SCEAGTY+RT QELRRVRSG +SE D++VT+HDV+DAQW+
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272
Query: 242 YDNTRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 301
YDN +DESYLR+++ PLE LL +KR+V+KDSAVNA+CYGAK+M+PG+LRYE+GIE+ E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332
Query: 302 VVLITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQM 361
+V+ITTKGEAI +AIA M+T ++TCDHG+VAK+KR IMERD YPR+WGLGP A +KK M
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392
Query: 362 KADGKLDKYGRANENTPETWKKTYV 386
G LDK+G+ ++TP TWK+ YV
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYV 417
>7291757 [J] KOG2529 Pseudouridine synthase
Length = 508
Score = 527 bits (1358), Expect = e-149
Identities = 253/395 (64%), Positives = 309/395 (78%)
Query: 5 FVIKPESVSPSSNTSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINLD 64
F IKP S +TS+WPLLLK++DKL +RS HYTP+ G+SPL RD+K Y+ +G INLD
Sbjct: 34 FQIKPSSKIAELDTSQWPLLLKNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLD 93
Query: 65 KPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVC 124
KPSNPSSHEVVAWIK+IL+ EKTGHSGTLDPKVTGCLIVC+DRATRLVKSQQ AGKEYV
Sbjct: 94 KPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVA 153
Query: 125 IVRLHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLGV 184
I +LH A++ ++ +GLE L GALFQRPPLISAVKRQLRVRT+YDS L+++D RN+GV
Sbjct: 154 IFKLHGAVESVAKVRQGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDYDETRNMGV 213
Query: 185 FWASCEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVYDN 244
FW SCEAG+Y+RT ELRRVRSG SE D +VT+HDV+DA W+Y+N
Sbjct: 214 FWVSCEAGSYIRTMCVHLGLVLGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAMWLYEN 273
Query: 245 TRDESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVVL 304
+DES LR++I+PLE LLV +KRI++KDS+VNAVCYGAK+ +PG+LRYE+GIE+ E+V+
Sbjct: 274 HKDESMLRRVIKPLEGLLVNHKRIIMKDSSVNAVCYGAKITLPGVLRYEDGIEIDQEIVI 333
Query: 305 ITTKGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMKAD 364
TTKGEAI +AIA M+T +A+CDHGVVAK+KR IMERD YPR+WGLGP A KK + A
Sbjct: 334 CTTKGEAICLAIALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGLGPKASAKKALIAA 393
Query: 365 GKLDKYGRANENTPETWKKTYVSLENAEPTTAPAS 399
GKLDK+GR NENTP+ W YV +P S
Sbjct: 394 GKLDKFGRPNENTPKEWLTGYVDYNAKKPAAQEVS 428
>CE16195 [J] KOG2529 Pseudouridine synthase
Length = 445
Score = 509 bits (1310), Expect = e-144
Identities = 240/379 (63%), Positives = 304/379 (79%), Gaps = 6/379 (1%)
Query: 14 PSSN------TSEWPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPS 67
PSSN S+WPLLLK+YDKL VR+ HYTP G SPLKRD+K+YISSG NLDKPS
Sbjct: 27 PSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPS 86
Query: 68 NPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVR 127
NPSSHEVV+WIKRILRCEKTGHSGTLDPKV+GCLIVC+DR TRL KSQQGAGKEY+CI +
Sbjct: 87 NPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFK 146
Query: 128 LHDALKDEKELGRGLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLGVFWA 187
LH+ ++D++++ + LE LTGALFQRPPLISAVKRQLR+RT+Y++ IE+D + +G+F
Sbjct: 147 LHEEVEDDRKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGIFNC 206
Query: 188 SCEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVYDNTRD 247
CE+GTY+RT QELRR RSG EN+N+VT+HDV+DAQ++ D +D
Sbjct: 207 ICESGTYVRTICVHLGLILGCGGQMQELRRNRSGICDENENMVTMHDVLDAQYLLDTQKD 266
Query: 248 ESYLRKIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVVLITT 307
ESY+R I++PLE LL +KR+VVKDS +NA+CYGAK++IPG+LRY++ IE+ E+V+++T
Sbjct: 267 ESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKILIPGILRYDDDIEVGKEIVIMST 326
Query: 308 KGEAIAVAIAQMSTVDLATCDHGVVAKVKRCIMERDLYPRRWGLGPIAQKKKQMKADGKL 367
KGEAI +AIAQM+T +A+ DHGVVAK KR IMERD+Y R+WGLGP+A KKKQM DG L
Sbjct: 327 KGEAICIAIAQMNTSTIASVDHGVVAKSKRVIMERDVYGRKWGLGPVASKKKQMVKDGLL 386
Query: 368 DKYGRANENTPETWKKTYV 386
DK+G+ N+ TP++W K YV
Sbjct: 387 DKFGKPNDTTPKSWAKEYV 405
>ECU05g1020 [J] KOG2529 Pseudouridine synthase
Length = 357
Score = 380 bits (975), Expect = e-105
Identities = 177/330 (53%), Positives = 247/330 (74%), Gaps = 2/330 (0%)
Query: 21 WPLLLKDYDKLLVRSGHYTPIPAGASPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKR 80
W LLL + D+++VR+GHYTP+ G+ PL+R ++ YI G+IN+DK NPSSHEVV W+K
Sbjct: 20 WDLLLANMDRMVVRTGHYTPLGCGSMPLRRRIEEYIKYGIINVDKSPNPSSHEVVTWVKE 79
Query: 81 ILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVCIVRLHDALKDEKELGR 140
IL+CEKTGHSGTLDP+V+G L +C+DRATRL KSQQ GKEYVC++ DE+ +
Sbjct: 80 ILKCEKTGHSGTLDPQVSGVLTICIDRATRLTKSQQSLGKEYVCVIEFLSE-PDEEGFHK 138
Query: 141 GLENLTGALFQRPPLISAVKRQLRVRTIYDSNLIEFDNKRNLGVFWASCEAGTYMRTXXX 200
+ L G+LFQRPPL+ AVKR+LR+R +Y +++EF+ ++ LG+F SCEAGTY+RT
Sbjct: 139 ASKRLVGSLFQRPPLMCAVKRELRIRNVYSIDILEFNREKRLGLFKVSCEAGTYVRTLCT 198
Query: 201 XXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVYDNTRDESYLRKIIQPLET 260
+ELRR RSG +SE D TLHD++DA ++++ T+DE+ +R++I PLE+
Sbjct: 199 HIGILMGCGARMKELRRTRSGRISEKD-AFTLHDLLDAVYIFNTTKDETVIRRVILPLES 257
Query: 261 LLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEVVLITTKGEAIAVAIAQMS 320
LLVGY RI++KDS VNA+CYGAKL I G+LR++ I++ EVV++TTKGEA+A+ IA +S
Sbjct: 258 LLVGYPRIMIKDSCVNAICYGAKLSITGVLRFDRDIDVGTEVVIMTTKGEAVALGIALVS 317
Query: 321 TVDLATCDHGVVAKVKRCIMERDLYPRRWG 350
+ +++ DHG+V + KR IME+DLYPR WG
Sbjct: 318 SPEMSIIDHGLVCRTKRVIMEKDLYPRSWG 347
>At5g14460 [J] KOG2529 Pseudouridine synthase
Length = 540
Score = 84.0 bits (206), Expect = 5e-16
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 36/203 (17%)
Query: 60 VINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAG 119
V+ ++KP +S V ++R+++ +K GH+GTLDP TG LIVCV +AT++V QG
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382
Query: 120 KEYVCIVRLHDA------------------LKDEKELGRGLENLTGALFQRPPLISAVK- 160
K Y + RL +A +KD+ ++ + L + G ++Q PP+ SA+K
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDD-DIKKALTSFLGEIWQVPPMFSAIKV 441
Query: 161 -------RQLRVRTIYDS----NLIEFDNKRNLG-----VFWASCEAGTYMRTXXXXXXX 204
+ R T+ S ++ +FD +R+L +F C GTY+R+
Sbjct: 442 GGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAK 501
Query: 205 XXXXXXXXQELRRVRSGALSEND 227
LRR G S ND
Sbjct: 502 ALGSCAHLTALRRDSIGEYSAND 524
>Hs21040257 [J] KOG2529 Pseudouridine synthase
Length = 349
Score = 57.4 bits (137), Expect = 5e-08
Identities = 57/236 (24%), Positives = 86/236 (36%), Gaps = 54/236 (22%)
Query: 58 SGVINLDKPSNPSSHEVV----------------AWIKRILRCEKTGHSGTLDPKVTGCL 101
SGV + KP P+S E++ W KR + K GH GTLD G L
Sbjct: 69 SGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVL 128
Query: 102 IVCVDRATRLVKSQQGAGKEYVCIVRLHDALKDEKELGRG-----------------LEN 144
+V + T+++ S K Y I L A GR L+
Sbjct: 129 VVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQK 188
Query: 145 LTGALFQRPPLISAVKRQ-LRVRTIYD-SNLIEFDNKRNLGVFWAS-------------- 188
TG + Q PPL SA+K+ R+ T+ ++E R + V+ S
Sbjct: 189 FTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVE 248
Query: 189 CEAGTYMRTXXXXXXXXXXXXXXXQELRRVRSGALSENDNLVTLHDVMDAQWVYDN 244
C G Y+R+ EL R + G + + H + + +W D+
Sbjct: 249 CGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEE-----HALPEDKWTIDD 299
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,037,415
Number of Sequences: 60738
Number of extensions: 997524
Number of successful extensions: 2249
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2229
Number of HSP's gapped (non-prelim): 9
length of query: 474
length of database: 30,389,216
effective HSP length: 110
effective length of query: 364
effective length of database: 23,708,036
effective search space: 8629725104
effective search space used: 8629725104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)