ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1293 good R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1293 Similar to YCL011c SP|P25555 GBP2 potential
telomere-associated protein {P15.1.f2.5}
(287 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YCL011c [R] KOG0118 FOG: RRM domain 229 4e-60
YNL004w [R] KOG0118 FOG: RRM domain 226 3e-59
SPAC328.05 [R] KOG0118 FOG: RRM domain 117 1e-26
Hs14141154 [A] KOG4212 RNA-binding protein hnRNP-M 78 1e-14
At4g24770 [R] KOG0118 FOG: RRM domain 72 9e-13
At2g35410 [R] KOG0118 FOG: RRM domain 70 3e-12
At5g50250 [R] KOG0118 FOG: RRM domain 69 8e-12
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 67 2e-11
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 67 3e-11
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 66 7e-11
At2g37220 [R] KOG0118 FOG: RRM domain 66 7e-11
Hs14141152 [A] KOG4212 RNA-binding protein hnRNP-M 65 9e-11
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 65 9e-11
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 65 9e-11
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 1e-10
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 62 7e-10
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 62 9e-10
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 62 9e-10
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 62 1e-09
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 2e-09
At1g60000 [R] KOG0118 FOG: RRM domain 61 2e-09
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 61 2e-09
At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 2e-09
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 60 3e-09
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 60 4e-09
At4g27000 [R] KOG0118 FOG: RRM domain 60 5e-09
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 6e-09
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 59 1e-08
7291799 [R] KOG0118 FOG: RRM domain 58 1e-08
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 58 2e-08
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 57 3e-08
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 57 3e-08
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 57 3e-08
SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM... 55 9e-08
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 55 9e-08
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 55 9e-08
ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 55 9e-08
At4g39260 [R] KOG0118 FOG: RRM domain 55 1e-07
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 55 1e-07
At1g09140 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 55 1e-07
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 55 2e-07
At5g40490 [R] KOG0118 FOG: RRM domain 54 2e-07
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 54 3e-07
Hs8400724 [R] KOG4733 FOG: RRM domain 53 6e-07
Hs8400722 [R] KOG4733 FOG: RRM domain 53 6e-07
Hs8400720 [R] KOG4733 FOG: RRM domain 53 6e-07
Hs8400718 [R] KOG4733 FOG: RRM domain 53 6e-07
Hs4506447 [R] KOG4733 FOG: RRM domain 53 6e-07
At3g52380 [R] KOG0118 FOG: RRM domain 53 6e-07
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 52 7e-07
CE24139 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM sup... 52 7e-07
CE08369 [A] KOG4212 RNA-binding protein hnRNP-M 52 7e-07
At3g53460 [R] KOG0118 FOG: RRM domain 52 7e-07
Hs7657506 [R] KOG4733 FOG: RRM domain 52 1e-06
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 52 1e-06
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 52 1e-06
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 52 1e-06
HsM5032089 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 52 1e-06
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 52 1e-06
Hs21361282 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 52 1e-06
Hs20127499 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 52 1e-06
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 52 1e-06
At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 1e-06
SPAC16.02c [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 51 2e-06
Hs4506449 [R] KOG4733 FOG: RRM domain 51 2e-06
7299190 [A] KOG4212 RNA-binding protein hnRNP-M 51 2e-06
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 51 2e-06
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 51 2e-06
At5g04280 [R] KOG0118 FOG: RRM domain 51 2e-06
At1g01080 [R] KOG0118 FOG: RRM domain 51 2e-06
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 50 3e-06
Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 50 3e-06
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 50 3e-06
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 3e-06
At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 50 3e-06
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 50 4e-06
YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 50 5e-06
At3g23830 [R] KOG0118 FOG: RRM domain 50 5e-06
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 49 6e-06
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 49 6e-06
At5g06210 [R] KOG0118 FOG: RRM domain 49 8e-06
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 49 8e-06
YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 49 1e-05
Hs5902076 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 48 1e-05
At2g21660 [R] KOG0118 FOG: RRM domain 48 1e-05
At1g17640 [R] KOG0118 FOG: RRM domain 48 1e-05
Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 48 2e-05
CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily) 48 2e-05
7300132 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM sup... 48 2e-05
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 47 2e-05
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 47 2e-05
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 47 2e-05
Hs4502847 [R] KOG0118 FOG: RRM domain 47 3e-05
At5g61030 [R] KOG0118 FOG: RRM domain 47 3e-05
At1g34140 [R] KOG0118 FOG: RRM domain 47 3e-05
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 47 4e-05
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 47 4e-05
Hs4506903 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 46 5e-05
At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 46 5e-05
At1g49600 [R] KOG0118 FOG: RRM domain 46 5e-05
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 46 7e-05
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 46 7e-05
At3g26420 [R] KOG0118 FOG: RRM domain 46 7e-05
At5g19960 [R] KOG0118 FOG: RRM domain 45 9e-05
At3g49430 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 45 9e-05
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 45 1e-04
At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 45 1e-04
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 45 2e-04
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 45 2e-04
At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 45 2e-04
SPBC3B9.11c [A] KOG0108 mRNA cleavage and polyadenylation factor... 44 2e-04
CE29126 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 44 2e-04
At4g13850 [R] KOG0118 FOG: RRM domain 44 2e-04
At1g47490 [R] KOG0118 FOG: RRM domain 44 2e-04
YNL016w [R] KOG0118 FOG: RRM domain 44 3e-04
Hs14719414 [R] KOG0118 FOG: RRM domain 44 3e-04
At5g19350 [R] KOG0118 FOG: RRM domain 44 3e-04
At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 44 3e-04
Hs9506671 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 43 5e-04
Hs7661936 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold at... 43 5e-04
CE07598 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 43 5e-04
At2g16260 [R] KOG0118 FOG: RRM domain 43 5e-04
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 43 6e-04
HsM4506779 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold a... 42 8e-04
Hs5803137 [R] KOG0118 FOG: RRM domain 42 8e-04
Hs21264343 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold a... 42 8e-04
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 42 8e-04
At1g73530 [R] KOG0118 FOG: RRM domain 42 8e-04
At1g18630 [R] KOG0118 FOG: RRM domain 42 8e-04
7299789 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 ... 42 8e-04
7296432 [K] KOG1548 Transcription elongation factor TAT-SF1 42 8e-04
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 42 0.001
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 42 0.001
Hs17482675 [A] KOG4212 RNA-binding protein hnRNP-M 42 0.001
Hs14110417 [R] KOG0118 FOG: RRM domain 42 0.001
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 42 0.001
SPBC29A3.07c [R] KOG0114 Predicted RNA-binding protein (RRM supe... 42 0.001
Hs14192947 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM s... 42 0.001
CE26938 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 42 0.001
CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 42 0.001
At5g02530 [A] KOG0533 RRM motif-containing protein 42 0.001
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 41 0.002
At4g09040 [R] KOG0118 FOG: RRM domain 41 0.002
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 41 0.002
At1g48920 [K] KOG4210 Nuclear localization sequence binding protein 41 0.002
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 41 0.002
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 41 0.002
Hs14110420 [R] KOG0118 FOG: RRM domain 41 0.002
Hs14110414 [R] KOG0118 FOG: RRM domain 41 0.002
ECU07g0340 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 41 0.002
At5g59950 [A] KOG0533 RRM motif-containing protein 41 0.002
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 41 0.002
At5g04810 [R] KOG4197 FOG: PPR repeat 41 0.002
At1g47500 [R] KOG0118 FOG: RRM domain 41 0.002
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 41 0.002
SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 40 0.003
Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 40 0.003
At4g02430 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 40 0.003
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 40 0.003
At1g16610 [R] KOG0118 FOG: RRM domain 40 0.003
7299058 [R] KOG0118 FOG: RRM domain 40 0.003
7290149 [R] KOG0118 FOG: RRM domain 40 0.003
At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 40 0.004
At2g14550 [A] KOG0131 Splicing factor 3b subunit 4 40 0.004
Hs4504447 [R] KOG0118 FOG: RRM domain 40 0.005
Hs14043072 [R] KOG0118 FOG: RRM domain 40 0.005
At2g37510 [R] KOG0118 FOG: RRM domain 40 0.005
At1g02840 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 40 0.005
7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 40 0.005
At3g48830_2 [AJ] KOG0123 Polyadenylate-binding protein (RRM supe... 40 0.005
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 39 0.007
SPAC22E12.02 [R] KOG0226 RNA-binding proteins 39 0.007
Hs17433768 [R] KOG0118 FOG: RRM domain 39 0.007
At3g08000 [R] KOG0118 FOG: RRM domain 39 0.007
At1g74230 [R] KOG0118 FOG: RRM domain 39 0.007
7294907 [R] KOG0110 RNA-binding protein (RRM superfamily) 39 0.007
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 39 0.007
Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 39 0.009
Hs7657504 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 39 0.009
Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superf... 39 0.009
Hs17572810 [A] KOG0533 RRM motif-containing protein 39 0.009
CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 39 0.009
CE05167 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 39 0.009
CE01058 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 39 0.009
At2g21690 [R] KOG0118 FOG: RRM domain 39 0.009
At1g07350 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold at... 39 0.009
YNL175c [K] KOG4210 Nuclear localization sequence binding protein 39 0.011
SPAC3G6.04 [K] KOG4210 Nuclear localization sequence binding pro... 39 0.011
Hs22058383 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 39 0.011
Hs21450675 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 39 0.011
CE13934 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM supe... 39 0.011
At5g54580 [R] KOG0118 FOG: RRM domain 39 0.011
At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 39 0.011
At1g11650 [R] KOG0118 FOG: RRM domain 39 0.011
Hs5031693 [R] KOG0118 FOG: RRM domain 38 0.015
Hs4504161 [A] KOG4211 Splicing factor hnRNP-F and related RNA-bi... 38 0.015
CE28597 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 38 0.015
CE26020 [A] KOG4211 Splicing factor hnRNP-F and related RNA-bind... 38 0.015
At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein 38 0.015
At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 38 0.015
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 38 0.015
7295256 [AR] KOG0109 RNA-binding protein LARK contains RRM and r... 38 0.015
7290689 [A] KOG0131 Splicing factor 3b subunit 4 38 0.015
Hs6005725 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 38 0.019
Hs20357578 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 38 0.019
Hs20357575 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 38 0.019
Hs20357572 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 38 0.019
Hs17452185 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 38 0.019
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 38 0.019
CE16399 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 38 0.019
At5g65260 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 38 0.019
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 38 0.019
At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 38 0.019
7291833 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 38 0.019
SPBC146.07 [A] KOG0120 Splicing factor U2AF large subunit (RRM s... 37 0.025
Hs4506445 [AR] KOG0109 RNA-binding protein LARK contains RRM and... 37 0.025
Hs13899354 [AR] KOG0109 RNA-binding protein LARK contains RRM an... 37 0.025
At5g54900 [R] KOG0118 FOG: RRM domain 37 0.025
At1g58470 [R] KOG0118 FOG: RRM domain 37 0.025
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 37 0.033
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 37 0.033
7301687 [R] KOG0118 FOG: RRM domain 37 0.033
7301686 [R] KOG0118 FOG: RRM domain 37 0.033
At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM super... 37 0.033
SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily) 37 0.043
Hs4758542 [R] KOG0118 FOG: RRM domain 37 0.043
Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 37 0.043
Hs14110404 [R] KOG0118 FOG: RRM domain 37 0.043
Hs10863997 [A] KOG1190 Polypyrimidine tract-binding protein 37 0.043
CE07355 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 37 0.043
At5g04600 [R] KOG4208 Nucleolar RNA-binding protein NIFK 37 0.043
At2g22090 [R] KOG0118 FOG: RRM domain 37 0.043
At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 37 0.043
7298863 [A] KOG0533 RRM motif-containing protein 37 0.043
7294821 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 37 0.043
7292101 [R] KOG4307 RNA binding protein RBM12/SWAN 37 0.043
Hs5031753 [A] KOG4211 Splicing factor hnRNP-F and related RNA-bi... 36 0.056
CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 36 0.056
At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 36 0.056
At2g22100 [R] KOG0118 FOG: RRM domain 36 0.056
7299785 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 36 0.056
YHR086w [R] KOG0118 FOG: RRM domain 36 0.073
HsM14916449 [R] KOG0118 FOG: RRM domain 36 0.073
Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 36 0.073
Hs5031703 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 36 0.073
Hs4507123 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 36 0.073
Hs21314767 [R] KOG0118 FOG: RRM domain 36 0.073
Hs18550462 [R] KOG0118 FOG: RRM domain 36 0.073
CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 36 0.073
CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 36 0.073
At3g11400 [J] KOG0122 Translation initiation factor 3 subunit g ... 36 0.073
At1g53650 [R] KOG0118 FOG: RRM domain 36 0.073
At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 36 0.073
At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 36 0.073
At1g13690 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans... 36 0.073
7300181_2 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 36 0.073
YOL041c [R] KOG0118 FOG: RRM domain 35 0.095
YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 35 0.095
Hs9558733 [R] KOG0118 FOG: RRM domain 35 0.095
Hs14734196 [R] KOG0118 FOG: RRM domain 35 0.095
CE25105 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 35 0.095
CE08254 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 35 0.095
Hs7706326 [R] KOG0114 Predicted RNA-binding protein (RRM superfa... 35 0.12
Hs6857826 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 35 0.12
Hs5803036 [R] KOG0118 FOG: RRM domain 35 0.12
Hs4826760 [A] KOG4211 Splicing factor hnRNP-F and related RNA-bi... 35 0.12
Hs13654587 [R] KOG0118 FOG: RRM domain 35 0.12
At3g19130 [R] KOG0118 FOG: RRM domain 35 0.12
At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 35 0.12
At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 35 0.12
7299788 [R] KOG0118 FOG: RRM domain 35 0.12
HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 35 0.16
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 35 0.16
Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 35 0.16
Hs22049560 [R] KOG0118 FOG: RRM domain 35 0.16
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 35 0.16
At5g10350 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 35 0.16
At2g33440 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 35 0.16
At1g32790 [R] KOG0118 FOG: RRM domain 35 0.16
7290796 [R] KOG0118 FOG: RRM domain 35 0.16
SPBC660.11 [R] KOG0118 FOG: RRM domain 34 0.21
Hs5730079 [R] KOG0118 FOG: RRM domain 34 0.21
Hs22059019 [R] KOG0118 FOG: RRM domain 34 0.21
Hs16905517 [R] KOG0118 FOG: RRM domain 34 0.21
CE29317 [R] KOG0118 FOG: RRM domain 34 0.21
CE18515 [R] KOG0118 FOG: RRM domain 34 0.21
CE17059 [R] KOG0118 FOG: RRM domain 34 0.21
At5g51120 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 34 0.21
At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily) 34 0.21
At3g14450 [R] KOG0118 FOG: RRM domain 34 0.21
At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein 34 0.21
Hs9624998 [A] KOG4211 Splicing factor hnRNP-F and related RNA-bi... 34 0.28
Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 34 0.28
Hs4504445 [R] KOG0118 FOG: RRM domain 34 0.28
Hs4503517 [J] KOG0122 Translation initiation factor 3 subunit g ... 34 0.28
Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM s... 34 0.28
Hs22042102 [R] KOG0118 FOG: RRM domain 34 0.28
Hs19923345 [R] KOG4307 RNA binding protein RBM12/SWAN 34 0.28
Hs14043070 [R] KOG0118 FOG: RRM domain 34 0.28
Hs13650572 [R] KOG0118 FOG: RRM domain 34 0.28
Hs13123780 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 34 0.28
CE27175 [R] KOG0118 FOG: RRM domain 34 0.28
At5g60980 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 34 0.28
At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 34 0.28
At1g60900 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 34 0.28
At1g54080 [R] KOG0118 FOG: RRM domain 34 0.28
7300034 [R] KOG0118 FOG: RRM domain 34 0.28
7297948 [A] KOG4207 Predicted splicing factor SR protein superfa... 34 0.28
YDR432w [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 ... 33 0.36
YBR212w [R] KOG0118 FOG: RRM domain 33 0.36
Hs14769296 [A] KOG4207 Predicted splicing factor SR protein supe... 33 0.36
At5g06000 [J] KOG0122 Translation initiation factor 3 subunit g ... 33 0.36
At5g05720 [R] KOG0110 RNA-binding protein (RRM superfamily) 33 0.36
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 33 0.36
At3g14100 [R] KOG0118 FOG: RRM domain 33 0.36
At1g60650 [R] KOG0118 FOG: RRM domain 33 0.36
7294455 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 33 0.36
Hs5729794 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 33 0.47
Hs4507997 [R] KOG1721 FOG: Zn-finger 33 0.47
Hs4503259 [R] KOG0118 FOG: RRM domain 33 0.47
Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 33 0.47
Hs14731277 [R] KOG0118 FOG: RRM domain 33 0.47
ECU11g1660 [K] KOG2068 MOT2 transcription factor 33 0.47
ECU08g0520 [R] KOG0110 RNA-binding protein (RRM superfamily) 33 0.47
CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans i... 33 0.47
At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 33 0.47
7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 33 0.47
YHR015w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 33 0.61
SPBC1D7.04c [A] KOG0533 RRM motif-containing protein 33 0.61
Hs7669490 [R] KOG1995 Conserved Zn-finger protein 33 0.61
Hs4885225 [R] KOG1995 Conserved Zn-finger protein 33 0.61
Hs14733321 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 33 0.61
Hs13654278 [R] KOG0118 FOG: RRM domain 33 0.61
At3g55340 [R] KOG0118 FOG: RRM domain 33 0.61
At3g52660 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 33 0.61
At1g17370 [R] KOG0118 FOG: RRM domain 33 0.61
7290571 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 33 0.61
7290566 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 33 0.61
7295521_1 [R] KOG0118 FOG: RRM domain 33 0.61
HsM18152777 [R] KOG0118 FOG: RRM domain 32 0.80
Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily) 32 0.80
Hs8922789 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 32 0.80
CE23823 [J] KOG2187 tRNA uracil-5-methyltransferase and related ... 32 0.80
At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 32 0.80
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 32 0.80
7299199 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 32 0.80
YBR119w [R] KOG0118 FOG: RRM domain 32 1.0
Hs4759098 [R] KOG0118 FOG: RRM domain 32 1.0
Hs4557453 [R] KOG0383 Predicted helicase 32 1.0
CE01044 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superf... 32 1.0
At5g53720 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 32 1.0
At5g03580 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 32 1.0
At2g47580 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 32 1.0
7304089 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 32 1.0
7296727 [R] KOG0226 RNA-binding proteins 32 1.0
7294989 [R] KOG0118 FOG: RRM domain 32 1.0
SPBC428.12c [R] KOG0118 FOG: RRM domain 32 1.4
Hs20472792 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 32 1.4
Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 32 1.4
CE27299 [K] KOG1548 Transcription elongation factor TAT-SF1 32 1.4
CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 32 1.4
CE02231 [R] KOG0118 FOG: RRM domain 32 1.4
At5g58470 [R] KOG1995 Conserved Zn-finger protein 32 1.4
At3g50670 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 32 1.4
At3g15010 [R] KOG0118 FOG: RRM domain 32 1.4
At1g48150 [K] KOG0014 MADS box transcription factor 32 1.4
7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 32 1.4
YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 31 1.8
Hs7657383 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 31 1.8
Hs4506899 [A] KOG4207 Predicted splicing factor SR protein super... 31 1.8
Hs22058338 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 31 1.8
CE18909 [R] KOG4733 FOG: RRM domain 31 1.8
CE03763 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 ... 31 1.8
At5g12190 [R] KOG0114 Predicted RNA-binding protein (RRM superfa... 31 1.8
SPBC1289.12 [R] KOG0118 FOG: RRM domain 31 2.3
SPBC106.12c [A] KOG0533 RRM motif-containing protein 31 2.3
Hs4758122 [R] KOG0118 FOG: RRM domain 31 2.3
Hs22040836 [R] KOG0118 FOG: RRM domain 31 2.3
Hs17441906 [T] KOG0116 RasGAP SH3 binding protein rasputin conta... 31 2.3
Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 31 2.3
Hs11036660 [R] KOG0118 FOG: RRM domain 31 2.3
Hs11036658 [R] KOG0118 FOG: RRM domain 31 2.3
CE18908 [R] KOG4733 FOG: RRM domain 31 2.3
CE18507 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 31 2.3
CE02197 [J] KOG0122 Translation initiation factor 3 subunit g (e... 31 2.3
CE00755 [R] KOG0151 Predicted splicing regulator contains RRM SW... 31 2.3
SPBC29A10.02 [T] KOG4363 Putative growth response protein 30 3.0
SPBC23E6.01c [R] KOG0118 FOG: RRM domain 30 3.0
SPBC1861.04c [A] KOG0128 RNA-binding protein SART3 (RRM superfam... 30 3.0
SPAC343.07 [R] KOG0118 FOG: RRM domain 30 3.0
Hs22067016 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM ... 30 3.0
Hs22056947 [R] KOG0118 FOG: RRM domain 30 3.0
Hs18585824 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 30 3.0
CE28070 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 30 3.0
CE15447 [AR] KOG0109 RNA-binding protein LARK contains RRM and r... 30 3.0
CE01924 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 30 3.0
At5g44200 [A] KOG0121 Nuclear cap-binding protein complex subuni... 30 3.0
At5g19030 [R] KOG0118 FOG: RRM domain 30 3.0
7300883 [R] KOG4208 Nucleolar RNA-binding protein NIFK 30 3.0
7289885 [R] KOG0118 FOG: RRM domain 30 3.0
YMR268c [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 30 4.0
HsM7657637 [K] KOG1548 Transcription elongation factor TAT-SF1 30 4.0
Hs4826998 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 30 4.0
Hs22046858 [R] KOG0118 FOG: RRM domain 30 4.0
Hs21361437 [K] KOG1548 Transcription elongation factor TAT-SF1 30 4.0
CE27875 [R] KOG0114 Predicted RNA-binding protein (RRM superfamily) 30 4.0
CE27711 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 30 4.0
CE27710 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 30 4.0
At4g20030 [R] KOG0118 FOG: RRM domain 30 4.0
7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superf... 30 4.0
7302761 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans i... 30 4.0
7298360 [R] KOG0118 FOG: RRM domain 30 4.0
7295357 [R] KOG0114 Predicted RNA-binding protein (RRM superfamily) 30 4.0
7294454 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 30 4.0
YDR429c [J] KOG0122 Translation initiation factor 3 subunit g (e... 30 5.2
Hs5902078 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 30 5.2
Hs4827046 [A] KOG2202 U2 snRNP splicing factor small subunit and... 30 5.2
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 30 5.2
Hs21361783 [R] KOG0118 FOG: RRM domain 30 5.2
Hs20537262 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 30 5.2
Hs13375952 [T] KOG2197 Ypt/Rab-specific GTPase-activating protei... 30 5.2
Hs10835077 [A] KOG2202 U2 snRNP splicing factor small subunit an... 30 5.2
CE24459 [R] KOG0226 RNA-binding proteins 30 5.2
CE18105 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 30 5.2
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 30 5.2
At3g54770 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 30 5.2
At3g49390 [R] KOG0118 FOG: RRM domain 30 5.2
At2g41060 [R] KOG0118 FOG: RRM domain 30 5.2
7301511 [R] KOG0118 FOG: RRM domain 30 5.2
SPBC18H10.03 [J] KOG0122 Translation initiation factor 3 subunit... 29 6.8
SPBC16E9.12c [A] KOG4209 Splicing factor RNPS1 SR protein superf... 29 6.8
Hs6912704 [T] KOG3519 Invasion-inducing protein TIAM1/CDC24 and ... 29 6.8
Hs4506243 [A] KOG1190 Polypyrimidine tract-binding protein 29 6.8
Hs20911035 [O] KOG0415 Predicted peptidyl prolyl cis-trans isome... 29 6.8
Hs19923399 [T] KOG0116 RasGAP SH3 binding protein rasputin conta... 29 6.8
Hs18563322 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 29 6.8
Hs14165466 [A] KOG1190 Polypyrimidine tract-binding protein 29 6.8
Hs14165464 [A] KOG1190 Polypyrimidine tract-binding protein 29 6.8
CE05447 [G] KOG2429 Glycosyl hydrolase family 47 29 6.8
At5g43960 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 29 6.8
At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 29 6.8
At3g07240 [T] KOG0116 RasGAP SH3 binding protein rasputin contai... 29 6.8
At1g55310 [R] KOG0118 FOG: RRM domain 29 6.8
7296221 [A] KOG2202 U2 snRNP splicing factor small subunit and r... 29 6.8
HsM13236563 [R] KOG0226 RNA-binding proteins 29 8.9
Hs4505895 [A] KOG0285 Pleiotropic regulator 1 29 8.9
Hs21359951 [R] KOG0226 RNA-binding proteins 29 8.9
CE29044 [L] KOG0990 Replication factor C subunit RFC5 29 8.9
CE27099 [R] KOG1995 Conserved Zn-finger protein 29 8.9
CE01998 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 29 8.9
At5g07290 [D] KOG4660 Protein Mei2 essential for commitment to m... 29 8.9
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 29 8.9
>YCL011c [R] KOG0118 FOG: RRM domain
Length = 427
Score = 229 bits (583), Expect = 4e-60
Identities = 128/297 (43%), Positives = 166/297 (55%), Gaps = 20/297 (6%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+KE FG +GEV ADIITS+GHHRGMGTVEF + V AI DGA R + VRQDN
Sbjct: 138 LKELFGTVGEVVEADIITSKGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDN 197
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
PPP + D GFEVF+ LP+S+NWQ LKDMFK CG VL ADV
Sbjct: 198 PPPEAAKE-----FSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVEL 252
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D +G SRGFG+V T+++ AI + G E +GRVL+V+EG+ + D Y R
Sbjct: 253 DFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRK----NNDRYNQR 308
Query: 181 Q-----PRNEPPATLKPKPLDIDPLA------ITTGGDRNSVIFCENMPSSTTESDLYDL 229
+ R P + + ID A + GGDRN I+C N+P ST SDL+DL
Sbjct: 309 REDLEDTRGTEPGLAQDAAVHIDETAAKFTEGVNPGGDRNCFIYCSNLPFSTARSDLFDL 368
Query: 230 FGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
FG + + +L G T + ++E DAD CI KL+ Y+YG L+++YAR
Sbjct: 369 FGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISYAR 425
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 26/159 (16%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+FV L F ++LK++F G+V+ AD++T + G RG GTV E DAI +
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFD 182
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G + R L V++ N PP K + A D
Sbjct: 183 GALFMDRKLMVRQD---------------------NPPPEAAK----EFSKKATREEIDN 217
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEG 247
+F N+P S L D+F V+ + L+ G
Sbjct: 218 GFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNG 256
Score = 35.8 bits (81), Expect = 0.073
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 1/71 (1%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLD 271
IF N+ T DL +LFG+V V+ ++ + +GH +F E ISK D
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGTVEFTKNESVQDAISKFD 182
Query: 272 KYSYGDHELKV 282
+ D +L V
Sbjct: 183 GALFMDRKLMV 193
>YNL004w [R] KOG0118 FOG: RRM domain
Length = 429
Score = 226 bits (576), Expect = 3e-59
Identities = 124/286 (43%), Positives = 165/286 (57%), Gaps = 10/286 (3%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+ E+F +IG+V RADIITSRGHHRGMGTVEF NS DVD AIR DGAF R IFVRQDN
Sbjct: 152 LTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDN 211
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
PPP+ + R + + EV V LP SVNWQ LKD+FK CG+V HADV
Sbjct: 212 PPPS--NNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVEL 269
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D DG S G GTV + + AI + G +G VLDVK + + D +
Sbjct: 270 DGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDD 329
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
P NE + GG+RN +I+C N+P ST +SDLYDLF ++ V +
Sbjct: 330 SPVNEEARKFTEN--------VVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAE 381
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
L + +G T + +++ +DAD+CI +L+ Y+YG +L ++YA+
Sbjct: 382 LRYDSKGAPTGIAVVEYDNVDDADVCIERLNNYNYGGCDLDISYAK 427
Score = 52.8 bits (125), Expect = 6e-07
Identities = 47/194 (24%), Positives = 78/194 (39%), Gaps = 23/194 (11%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+FV L + ++L + F G V+ AD++T R G RG GTV + + AIR +
Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIRQYD 196
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G + R + V++ N PP+ + +D +
Sbjct: 197 GAFFMDRKIFVRQD---------------------NPPPSNNIKERKALDRGELRHNRKT 235
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
+ VI +N+P+S L D+F V + L+ +G T + F +D I
Sbjct: 236 HEVI-VKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIE 294
Query: 269 KLDKYSYGDHELKV 282
K + YS + L V
Sbjct: 295 KYNGYSIEGNVLDV 308
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 117 bits (294), Expect = 1e-26
Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 43/303 (14%)
Query: 1 MKEYFGKIGEVRRADIIT-SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+KE+ G++G V +I+ G +G +E++ + + TAI+ GR +++R+D
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIRED 141
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQ---------------LPFSVNWQELK 104
A + K + + ++FV LP++V WQ+LK
Sbjct: 142 REQNARFGSSSVSPSASSNGKDSEPDR-QLFVGNVSSISNPLYSFPRTLLPYNVRWQDLK 200
Query: 105 DMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKG 164
D+F+ G V+ AD+ +++G+SRG G V M++ ++ AI+ T++ GR L+V+ +
Sbjct: 201 DLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRF 260
Query: 165 TSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTES 224
+ Y P P ++ I+ N+P +T++
Sbjct: 261 AHHKIEDLVYHAY-PHGPCSD-------------------------CIYVGNLPWATSDR 294
Query: 225 DLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTY 284
+L DLF + VI ++ P G QFE DA I KL+ Y YG L+++Y
Sbjct: 295 NLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSY 354
Query: 285 ARF 287
A +
Sbjct: 355 AHY 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
V+V L + V W ELK+ G+VL+ +++ +G S+G + +T E+ AI+ +
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDID-PLAITTGGD 207
++ GR++ ++E + + R ++ P A+ K + D L +
Sbjct: 128 NQKFMGRLVYIREDREQNARFGSSSV----------SPSASSNGKDSEPDRQLFVGNVSS 177
Query: 208 RNSVIFC---ENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
++ ++ +P + DL DLF VI + +N EG + ++A
Sbjct: 178 ISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAM 237
Query: 265 ICISKLDKYSYGDHELKVTYARF 287
I L + L+V RF
Sbjct: 238 HAIQMLHNTDFMGRTLEVRLDRF 260
>Hs14141154 [A] KOG4212 RNA-binding protein hnRNP-M
Length = 691
Score = 78.2 bits (191), Expect = 1e-14
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 7 KIGEVRRADIIT-SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAE 65
K+GEV +++ + G RG VEF + A + L+GR + V++D P E
Sbjct: 94 KVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKED--PDGE 151
Query: 66 ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGK 125
+R ++A G VFVA L + V W++LK++F G V+ AD++ D+DGK
Sbjct: 152 CARRAM--------QKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGK 203
Query: 126 SRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNE 185
SRG GTV + AI + G R + VK A D + P +P+
Sbjct: 204 SRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK-----MDERALPKGDFFPPERPQQL 258
Query: 186 P 186
P
Sbjct: 259 P 259
Score = 60.5 bits (145), Expect = 3e-09
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++FV LPF W+ LKD F CG VL+AD+ + +GKS+G G V + E A R
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 148 TGTEYKGRVLDVK 160
G + GR +DV+
Sbjct: 674 NGMKLSGREIDVR 686
Score = 52.8 bits (125), Expect = 6e-07
Identities = 27/76 (35%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Query: 87 FEVFVAQLPFSVNWQELKDMFK-PCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR 145
+ F+ +PF V WQ LKD+ K G+V + +++ D +GKSRG V +E A
Sbjct: 71 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 130
Query: 146 HWTGTEYKGRVLDVKE 161
GR L VKE
Sbjct: 131 VLNKHSLSGRPLKVKE 146
Score = 39.7 bits (91), Expect = 0.005
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+KE F G V RADI+ + G RG+GTV F S + AI +G L R + V+ D
Sbjct: 181 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 240
Score = 38.9 bits (89), Expect = 0.009
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+ F + G V ADI G +G G V+F + + A R +G L+GR I VR D
Sbjct: 630 LKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 688
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 72.0 bits (175), Expect = 9e-13
Identities = 50/158 (31%), Positives = 79/158 (49%), Gaps = 13/158 (8%)
Query: 5 FGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
F + G V A++I +R RG G V ++ + +TA+ + LNGR + V + P
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR 122
+ R R ++ F V+V LP+ V+ L+ +F G V+ A VV DR
Sbjct: 230 GSRPERA----------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 279
Query: 123 D-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
+ G+SRGFG V M+ ++ N+AI G +GR + V
Sbjct: 280 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Score = 46.6 bits (109), Expect = 4e-05
Identities = 46/203 (22%), Positives = 82/203 (39%), Gaps = 32/203 (15%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDA 143
E ++FV L + VN Q L +F+ G V A+V+ +R+ +SRGFG V M++ ++ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 144 IRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAIT 203
+ + + GR+L V + +R R PR PA
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPRGSRP---------ERAPRVYEPAFR------------- 245
Query: 204 TGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPED 262
++ N+P L LF V+ +++ + E +R + ++
Sbjct: 246 --------VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 263 ADICISKLDKYSYGDHELKVTYA 285
+ IS LD + ++V A
Sbjct: 298 LNEAISALDGQNLEGRAIRVNVA 320
>At2g35410 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 70.5 bits (171), Expect = 3e-12
Identities = 48/186 (25%), Positives = 85/186 (44%), Gaps = 26/186 (13%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++FV LP+S++ ++ ++F CG V + +++ +DGK+RGF V MA+ E+ AI +
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
+ GR++ V + T P+ P + P P P GD
Sbjct: 156 DTFQVSGRIISVSFARRFKKPT---------PKSPNDLP----SPAP-----------GD 191
Query: 208 RNSVIFCENMPSSTTESDLYDLF--GSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADI 265
++ N+ + L +LF PV + +PEG + + F T E+A+
Sbjct: 192 TRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAEN 251
Query: 266 CISKLD 271
I+KL+
Sbjct: 252 AITKLN 257
Score = 51.2 bits (121), Expect = 2e-06
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV--- 56
+ E FG+ G V +II + G +RG V + + AI D ++GR I V
Sbjct: 111 ISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
Query: 57 -RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPC--GDV 113
R P P + D +++V+ L + L+++F V
Sbjct: 171 RRFKKPTPKSPN--------DLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPV 222
Query: 114 LHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATG 173
V D +G+S G+G V AT+E+ +AI G E GR + +K S R+A+
Sbjct: 223 SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLK----FSLRSASES 278
Query: 174 AD 175
D
Sbjct: 279 ED 280
Score = 35.4 bits (80), Expect = 0.095
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLD 271
+F N+P S + +D+ +LFG V +++ +G ++ + E+A I K D
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD 156
Query: 272 KYSYGDHELKVTYAR 286
+ + V++AR
Sbjct: 157 TFQVSGRIISVSFAR 171
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 68.9 bits (167), Expect = 8e-12
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 5 FGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
F + G V +++I +R RG G V + + + A+ + +NGR + V + P
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR 122
+ R R +D F ++V LP+ V+ L+ +F G V+ A VV+DR
Sbjct: 193 GSRPERQ----------PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDR 242
Query: 123 D-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
+ G+SRGFG V M+ + + N AI G +GR + V + + R
Sbjct: 243 ETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 54.3 bits (129), Expect = 2e-07
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDA 143
E ++FV LP+ V+ Q L +F+ G V ++V+ +RD +SRGFG V M+T E+ A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 144 IRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAIT 203
+ + E GR L V +R RQPR
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRP---------ERQPRVY------------------ 203
Query: 204 TGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPED 262
D I+ N+P L LF V+ +++ + E +R + Q +
Sbjct: 204 ---DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 263 ADICISKLDKYSYGDHELKVTYA 285
++ I+ LD + +KV A
Sbjct: 261 VNVAIAALDGQNLEGRAIKVNVA 283
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 67.4 bits (163), Expect = 2e-11
Identities = 65/286 (22%), Positives = 115/286 (39%), Gaps = 54/286 (18%)
Query: 5 FGKIGEVRRA----DIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
FG++G V D++T R G G V F N D AI++ + L G+ I V +
Sbjct: 56 FGQMGTVVTVRVCRDLVTRRS--LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSH 113
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P+ + R+ +F+ L S++ + L D F G+++ V
Sbjct: 114 RDPS-VRRSGAG---------------NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV 157
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D G+S+G+G V A +E AI + G +L+ K+ ++ R
Sbjct: 158 DSSGQSKGYGFVQYANEESAQKAIE-----KLNGMLLNDKQ----------VYVGPFLRR 202
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
Q R+ T + + ++ +N+ STT+ DL + FG +
Sbjct: 203 QERDS-----------------TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 245
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
++ + EG + FE +DA + L+ + + D E V A+
Sbjct: 246 VMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 291
Score = 63.9 bits (154), Expect = 2e-10
Identities = 62/271 (22%), Positives = 107/271 (38%), Gaps = 44/271 (16%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-----RQD 59
FG I + A + S G +G G V++ N AI +G LN + ++V RQ+
Sbjct: 147 FGNIVSCKVA--VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQE 204
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
A ++ V+V L S +LK+ F G + A V+
Sbjct: 205 RDSTANKTKFT-----------------NVYVKNLAESTTDDDLKNAFGEYGKITSAVVM 247
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIP 179
D +GKS+GFG V + A+ G ++ + V + S R
Sbjct: 248 KDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRV----- 302
Query: 180 RQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIIT 239
R +N A K ++S ++ +N+ S ++ L ++F V +
Sbjct: 303 RYEQNLKEAADK---------------FQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSS 347
Query: 240 KLLLNPEGHFTRNSYCQFETPEDADICISKL 270
K++ +P G + + F TPE+A +S+L
Sbjct: 348 KVMRDPNGTSKGSGFVAFATPEEATEAMSQL 378
Score = 58.5 bits (140), Expect = 1e-08
Identities = 42/162 (25%), Positives = 75/162 (45%), Gaps = 5/162 (3%)
Query: 1 MKEYFGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K FG+ G++ A ++ G +G G V F N+ D A+ +G + + +V +
Sbjct: 231 LKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHD--EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHAD 117
T K A D + ++V L S++ ++LK++F P G V +
Sbjct: 291 QKKSER--ETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSK 348
Query: 118 VVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
V+ D +G S+G G V AT E+ +A+ +G + + L V
Sbjct: 349 VMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 31.6 bits (70), Expect = 1.4
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNS----YCQFETPEDAD 264
N+ ++ ++ + T+S L+D FG + V+ ++ TR S Y F P+DA
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVC---RDLVTRRSLGYGYVNFTNPQDAA 91
Query: 265 ICISKLDKYSYGDHELKVTYA 285
I +L+ ++V Y+
Sbjct: 92 RAIQELNYIPLYGKPIRVMYS 112
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 67.0 bits (162), Expect = 3e-11
Identities = 61/284 (21%), Positives = 109/284 (37%), Gaps = 31/284 (10%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
E+F G++ + +++ +G V F N + D AI + +G L G +FV
Sbjct: 233 EHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV------ 286
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR 122
R + E V++ ++ + LKD+F G L V+TD
Sbjct: 287 ----GRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS 342
Query: 123 DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQP 182
GKS+GFG V + E A+ G + G+++ V Q
Sbjct: 343 SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA------------------QK 384
Query: 183 RNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLL 242
+ E A LK + I G + ++ +N+ + + L + F S + K +
Sbjct: 385 KVERQAELKQMFEQLKRERIR--GCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVK-V 441
Query: 243 LNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ EG F +PEDA +++++ G L + A+
Sbjct: 442 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 485
Score = 57.0 bits (136), Expect = 3e-08
Identities = 40/164 (24%), Positives = 79/164 (47%), Gaps = 13/164 (7%)
Query: 1 MKEYFGKIGEVRRADIIT-SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+ F K G+ ++T S G +G G V F++ A+ + +G +NG+ IFV +
Sbjct: 323 LKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 382
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHD---EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
++ R KR +G ++++ L +++ ++L++ F G +
Sbjct: 383 QK---KVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRV 439
Query: 117 DVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
V+ + +G+S+GFG + ++ E A+ TE GR+L K
Sbjct: 440 KVMQE-EGQSKGFGLICFSSPEDATKAM-----TEMNGRILGSK 477
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 65.9 bits (159), Expect = 7e-11
Identities = 63/282 (22%), Positives = 105/282 (36%), Gaps = 31/282 (10%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
F G + ++ +G V F D AI +G LN R +FV +
Sbjct: 119 FSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK---- 174
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG 124
SR K E V++ V+ + LK++F G L V+ D +G
Sbjct: 175 --SRKEREAELGAKAK----EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG 228
Query: 125 KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRN 184
KS+GFG V E N A+ G E G+++ V Q +
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA------------------QKKV 270
Query: 185 EPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLN 244
E A LK K + I+ N ++ +N+ + + L F + K++L
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 245 PEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+G + F +PE+A +++++ G L V A+
Sbjct: 329 -DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 48.9 bits (115), Expect = 8e-06
Identities = 55/257 (21%), Positives = 93/257 (35%), Gaps = 49/257 (19%)
Query: 15 DIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXX 74
D+IT R G V F D + A+ + + G+ I + P+
Sbjct: 45 DMITRRS--LGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPS---------- 92
Query: 75 XXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYM 134
R G VF+ L S++ + L D F G++L VV D +G S+G+ V+
Sbjct: 93 -----LRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 145
Query: 135 ATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKP 194
T+E + AI G R + V K R A GA K K
Sbjct: 146 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA----------------KAKE 189
Query: 195 LDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSY 254
+ ++ +N + L +LF + K++ +P G +
Sbjct: 190 F--------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 255 CQFETPEDADICISKLD 271
+E EDA+ + +++
Sbjct: 236 VSYEKHEDANKAVEEMN 252
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 65.9 bits (159), Expect = 7e-11
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+ + F G V ++I + G RG G V ++ ++V+ A + +G L+GR + V
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNA 166
Query: 59 DNPPP---------AEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKP 109
PPP S G V+V L + V+ L+ +F
Sbjct: 167 GPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSE 226
Query: 110 CGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
G V+ A V+ DRD G+S+GFG V + ++ +AI+ G + GR + V E + R
Sbjct: 227 QGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/76 (36%), Positives = 45/76 (58%), Gaps = 1/76 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++FV LPF+V+ +L +F+ G+V +V+ D+ G+SRGFG V M++ + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 147 WTGTEYKGRVLDVKEG 162
+ G E GR L V G
Sbjct: 152 FNGYELDGRPLRVNAG 167
>Hs14141152 [A] KOG4212 RNA-binding protein hnRNP-M
Length = 730
Score = 65.5 bits (158), Expect = 9e-11
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 39/212 (18%)
Query: 7 KIGEVRRADIIT-SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAE 65
K+GEV +++ + G RG VEF + A + L+GR + V++D P E
Sbjct: 94 KVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKED--PDGE 151
Query: 66 ISRTXXXXXXXXX-------------------------------XKRAHDEGFEVFVAQL 94
+R +A G VFVA L
Sbjct: 152 HARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANL 211
Query: 95 PFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKG 154
+ V W++LK++F G V+ AD++ D+DGKSRG GTV + AI + G
Sbjct: 212 DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 271
Query: 155 RVLDVKEGKGTSTRTAATGADTYIPRQPRNEP 186
R + VK A D + P +P+ P
Sbjct: 272 RPMHVK-----MDERALPKGDFFPPERPQQLP 298
Score = 60.5 bits (145), Expect = 3e-09
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++FV LPF W+ LKD F CG VL+AD+ + +GKS+G G V + E A R
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 148 TGTEYKGRVLDVK 160
G + GR +DV+
Sbjct: 713 NGMKLSGREIDVR 725
Score = 59.3 bits (142), Expect = 6e-09
Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 10/206 (4%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKP-CGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR 145
+ F+ +PF V WQ LKD+ K G+V + +++ D +GKSRG V +E A
Sbjct: 71 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 130
Query: 146 HWTGTEYKGRVLDVKEG-------KGTSTRTAATGADTYIPRQPR--NEPPATLKPKPLD 196
GR L VKE + A TG P P PP+ L +
Sbjct: 131 VLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIP 190
Query: 197 IDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQ 256
+ + G S +F N+ L ++F V+ +L + +G
Sbjct: 191 NEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 250
Query: 257 FETPEDADICISKLDKYSYGDHELKV 282
FE +A IS + D + V
Sbjct: 251 FEQSIEAVQAISMFNGQLLFDRPMHV 276
Score = 39.7 bits (91), Expect = 0.005
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+KE F G V RADI+ + G RG+GTV F S + AI +G L R + V+ D
Sbjct: 220 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 279
Score = 38.9 bits (89), Expect = 0.009
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+ F + G V ADI G +G G V+F + + A R +G L+GR I VR D
Sbjct: 669 LKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 727
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 65.5 bits (158), Expect = 9e-11
Identities = 63/286 (22%), Positives = 113/286 (39%), Gaps = 35/286 (12%)
Query: 5 FGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPP 63
F G + + T G+ +G G V F TAI +G L+ + ++V + P
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRA 224
Query: 64 AEISRTXXXXXXXXXXKRAHDEGFE---VFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ K + G + VFV ++ ++L MF G++ A V+T
Sbjct: 225 QRM-------------KELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMT 271
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D GK +GFG V A ++ A+ + +L+ GT + + A
Sbjct: 272 DAQGKPKGFGFVAFADQDAAGQAVE-----KLNDSILE-----GTDCKLSVCRA------ 315
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
Q ++E A LK K + + N ++ +N+ + L D F S + K
Sbjct: 316 QKKSERSAELKRKYEALKQERVQRYQGVN--LYVKNIEEDLNDDGLRDHFSSFGTITSAK 373
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
++++ G + FE PE+A ++ ++ G L V A+
Sbjct: 374 VMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
Score = 40.0 bits (92), Expect = 0.004
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD 84
G V F D + A+ + ++GR + + PA +RA +
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPA--------------ARRAGN 144
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
+F+ L ++ + + D F G++L V TD +G S+G+G V+ T+ AI
Sbjct: 145 GN--IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Query: 145 RHWTG 149
G
Sbjct: 203 EKVNG 207
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/85 (25%), Positives = 35/85 (40%), Gaps = 3/85 (3%)
Query: 198 DPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQF 257
DP A G N IF +N+ +YD F ++ K+ + EG+ + F
Sbjct: 136 DPAARRAG---NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHF 192
Query: 258 ETPEDADICISKLDKYSYGDHELKV 282
ET A I K++ D ++ V
Sbjct: 193 ETEHSAQTAIEKVNGMLLSDKKVYV 217
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 65.5 bits (158), Expect = 9e-11
Identities = 63/286 (22%), Positives = 113/286 (39%), Gaps = 35/286 (12%)
Query: 5 FGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPP 63
F G + + T G+ +G G V F TAI +G L+ + ++V + P
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRA 224
Query: 64 AEISRTXXXXXXXXXXKRAHDEGFE---VFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ K + G + VFV ++ ++L MF G++ A V+T
Sbjct: 225 QRM-------------KELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMT 271
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D GK +GFG V A ++ A+ + +L+ GT + + A
Sbjct: 272 DAQGKPKGFGFVAFADQDAAGQAVE-----KLNDSILE-----GTDCKLSVCRA------ 315
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
Q ++E A LK K + + N ++ +N+ + L D F S + K
Sbjct: 316 QKKSERSAELKRKYEALKQERVQRYQGVN--LYVKNIEEDLNDDGLRDHFSSFGTITSAK 373
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
++++ G + FE PE+A ++ ++ G L V A+
Sbjct: 374 VMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
Score = 40.0 bits (92), Expect = 0.004
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD 84
G V F D + A+ + ++GR + + PA +RA +
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPA--------------ARRAGN 144
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
+F+ L ++ + + D F G++L V TD +G S+G+G V+ T+ AI
Sbjct: 145 GN--IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Query: 145 RHWTG 149
G
Sbjct: 203 EKVNG 207
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/85 (25%), Positives = 35/85 (40%), Gaps = 3/85 (3%)
Query: 198 DPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQF 257
DP A G N IF +N+ +YD F ++ K+ + EG+ + F
Sbjct: 136 DPAARRAG---NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHF 192
Query: 258 ETPEDADICISKLDKYSYGDHELKV 282
ET A I K++ D ++ V
Sbjct: 193 ETEHSAQTAIEKVNGMLLSDKKVYV 217
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 64.7 bits (156), Expect = 1e-10
Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 48/262 (18%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD 84
G G V ++N+ D + A++ + ++LNG+ I + + R
Sbjct: 88 GYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSS---------------RDSSARRSG 132
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
G +FV L SV+ + L + F CG ++ V TD G+SRG+G V T++ +AI
Sbjct: 133 VG-NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAI 191
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITT 204
+ G+VL+ K+ ++ ++ R D + T
Sbjct: 192 E-----KLNGKVLNDKQ----------IFVGPFLRKEERESA----------ADKMKFTN 226
Query: 205 GGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
++ +N+ +TT+ +L FG + ++ + +G + FE PEDA
Sbjct: 227 -------VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 265 ICISKLDKYSYGDHELKVTYAR 286
+ L+ + D E V A+
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQ 301
Score = 57.0 bits (136), Expect = 3e-08
Identities = 63/289 (21%), Positives = 106/289 (35%), Gaps = 37/289 (12%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+ E F G + + T G RG G V+F+ AI +G LN + IFV
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV--- 206
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
R K + V+V L + ELK F G + A V+
Sbjct: 207 ----GPFLRKEERESAADKMKFTN-----VYVKNLSEATTDDELKTTFGQYGSISSAVVM 257
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIP 179
D DGKSR FG V E A+ G ++ + V + + S R +
Sbjct: 258 RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERE--------LE 309
Query: 180 RQPRNEPPATLKPKPLDIDPLAITTGGDR--NSVIFCENMPSSTTESDLYDLFGSVAPVI 237
R E + + GG++ ++ +N+ + T+ L +LF +
Sbjct: 310 LSRRYEQGS--------------SDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTIT 355
Query: 238 ITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
K++ +P G + + F +A +++++ G L V A+
Sbjct: 356 SCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Score = 29.6 bits (65), Expect = 5.2
Identities = 18/76 (23%), Positives = 39/76 (50%), Gaps = 3/76 (3%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPEDADICISKL 270
++ ++ + T+S LYD F V V+ ++ + + + Y + +DA+ + KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 271 DKYSY-GDHELKVTYA 285
+ YSY +++TY+
Sbjct: 108 N-YSYLNGKMIRITYS 122
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 62.4 bits (150), Expect = 7e-10
Identities = 56/282 (19%), Positives = 110/282 (38%), Gaps = 32/282 (11%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
FGKI + A + G+ +G G V F++ + AI +G LN + ++V
Sbjct: 191 FGKILSCKVA--VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG 124
S+ V++ L + QE D+F G++ +V D++
Sbjct: 249 RQSKVEALKANFT----------NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND 298
Query: 125 KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRN 184
K RGFG V A E A+ EYKG+ L V + ++
Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQ----------------KKHER 342
Query: 185 EPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLN 244
E + + + ++ + G + +F +N+ + L F + + K++ +
Sbjct: 343 EEELRKRYEQMKLEKMNKYQGVN----LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD 398
Query: 245 PEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+G + + TPE+A+ ++++++ L V A+
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 57.8 bits (138), Expect = 2e-08
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 1/158 (0%)
Query: 3 EYFGKIGEVRRADIITSRGHH-RGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNP 61
+ FG+ GE+ ++ + RG G V + N A+ + + G+ ++V +
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Query: 62 PPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD 121
K +G +F+ L V+ + LK F G + A ++TD
Sbjct: 339 KHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD 398
Query: 122 RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
GKS+GFG V T E+ N A+ G+ L V
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 48.5 bits (114), Expect = 1e-05
Identities = 57/286 (19%), Positives = 100/286 (34%), Gaps = 48/286 (16%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGT--VEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
E F IG V + R +G V F+N D + A+ + + + GR +
Sbjct: 98 ELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ 157
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P+ R G VF+ L +++ + L D F G +L V
Sbjct: 158 RDPS---------------LRKMGTG-NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D G ++G+G V+ + E N AI H G + + V ++ R
Sbjct: 202 DELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH---------------HVSR 246
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
+ R LK + ++ +N+ + TE + DLFG +
Sbjct: 247 RERQSKVEALKANFTN---------------VYIKNLDTEITEQEFSDLFGQFGEITSLS 291
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
L+ + + + E A + +L+ Y +L V A+
Sbjct: 292 LVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQ 337
Score = 33.1 bits (74), Expect = 0.47
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 137 KEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPK--- 193
K+Q + A+ T + KE S+ T +T P + EP A +P
Sbjct: 7 KKQADAAVESDVNTNNEAVESSTKE---ESSNTPSTETQ---PEKKAEEPEAAAEPSEST 60
Query: 194 --PLDIDPLAITTGGDRNSV-IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFT 250
P + +A +G S ++ + S TE+ L++LF S+ PV ++ + T
Sbjct: 61 STPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA---VT 117
Query: 251 RNS----YCQFETPEDADICISKLD 271
R S Y F ED + + +L+
Sbjct: 118 RRSLGYAYVNFHNMEDGEKALDELN 142
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 62.0 bits (149), Expect = 9e-10
Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 16/156 (10%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV---RQDNP 61
F G + + RG G V F AI +G LN R +FV +
Sbjct: 119 FSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 62 PPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD 121
AE+ E ++V LP V+ Q L+D+F G +L V+ D
Sbjct: 179 REAELGARAL-------------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 122 RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVL 157
G SR FG V E+ A+ H G E GR+L
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/175 (26%), Positives = 65/175 (36%), Gaps = 31/175 (17%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+F+ L S++ + L D F G++L V D G SRGFG V+ T E AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G R + V K R A GA L T
Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARA-----------------------LEFTN---- 192
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDA 263
I+ +N+P E L DLF ++ K++ + GH + FE E+A
Sbjct: 193 ---IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Score = 32.0 bits (71), Expect = 1.0
Identities = 21/117 (17%), Positives = 47/117 (39%), Gaps = 1/117 (0%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+++ F + G++ ++ GH R G V F + A+ +G ++GR ++ +
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA 266
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+ + +G ++V L S++ +L+ F P G + A
Sbjct: 267 QKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 62.0 bits (149), Expect = 9e-10
Identities = 66/288 (22%), Positives = 107/288 (36%), Gaps = 44/288 (15%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
FG I + A +T R +G G V+F AI +G +N + +FV
Sbjct: 159 FGTILSCKVAMDVTGRS--KGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGH------ 210
Query: 65 EISRTXXXXXXXXXXKRAHDEGF------EVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
+RA DE V+V LP + EL+ F G + A V
Sbjct: 211 ----------FIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260
Query: 119 VTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYI 178
+ D+ G SR FG V E A+ G VL V + S R
Sbjct: 261 MRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSER---------- 310
Query: 179 PRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVII 238
E K + I+ + G + ++ +N+ S + L ++F V
Sbjct: 311 ------EEELRRKFEQERINRFEKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTS 360
Query: 239 TKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+K++LNP+G + + PE+A +S+++ G L + A+
Sbjct: 361 SKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Score = 50.8 bits (120), Expect = 2e-06
Identities = 35/150 (23%), Positives = 66/150 (43%), Gaps = 1/150 (0%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+++ FGK G + A ++ + G+ R G V F + +A+ +G L ++V +
Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ +G +++ L SV+ ++LK+MF G+V + V+
Sbjct: 305 QKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVM 364
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
+ G SRGFG V + E+ A+ G
Sbjct: 365 LNPQGMSRGFGFVAYSNPEEALRALSEMNG 394
Score = 47.8 bits (112), Expect = 2e-05
Identities = 56/262 (21%), Positives = 96/262 (36%), Gaps = 46/262 (17%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD 84
G + F+N D A+ + L R I + N P+ R
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPST---------------RLSG 134
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
+G +F+ L S++ + L + F G +L V D G+S+G+G V +E AI
Sbjct: 135 KG-NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAI 193
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITT 204
+ G +++ K+ +I RQ R T P
Sbjct: 194 -----DKLNGMLMNDKQ----------VFVGHFIRRQERARDENTPTP------------ 226
Query: 205 GGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
R + ++ +N+P E +L FG + ++ + G+ + FE E A
Sbjct: 227 ---RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAA 283
Query: 265 ICISKLDKYSYGDHELKVTYAR 286
+ K++ S GD L V A+
Sbjct: 284 SAVEKMNGISLGDDVLYVGRAQ 305
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/84 (22%), Positives = 37/84 (43%)
Query: 199 PLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFE 258
P+ + NS ++ ++ TE+ L+DLF VA V+ ++ + +Y F
Sbjct: 38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 259 TPEDADICISKLDKYSYGDHELKV 282
P DA + L+ D +++
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRI 121
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 61.6 bits (148), Expect = 1e-09
Identities = 42/151 (27%), Positives = 62/151 (40%), Gaps = 10/151 (6%)
Query: 9 GEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISR 68
G + +++ +G G V F + AI+ +G LNGR +FV Q SR
Sbjct: 123 GNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK------SR 176
Query: 69 TXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRG 128
K E V++ ++ + LKD+F G L V+TD GKS+G
Sbjct: 177 KEREAELGARAK----EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 232
Query: 129 FGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
FG V E A+ G E G+ + V
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/161 (24%), Positives = 71/161 (43%), Gaps = 7/161 (4%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+ FGK G ++T G +G G V F D A+ + +G LNG+ I+V +
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ + + ++V L ++ + L+ F P G + A V+
Sbjct: 267 QKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM 326
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
+ G+S+GFG V ++ E+ A+ TE GR++ K
Sbjct: 327 ME-GGRSKGFGFVCFSSPEEATKAV-----TEMNGRIVATK 361
Score = 56.2 bits (134), Expect = 5e-08
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 31/183 (16%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+FV L S+N + L D G++L +VV D +G S+G+G V+ T E AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G GR + V + K R A GA + + P
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGA------RAKEFPN--------------------- 192
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
++ +N + L DLFG P + K++ + G + FE EDA +
Sbjct: 193 ---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 269 KLD 271
+++
Sbjct: 250 EMN 252
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 61.2 bits (147), Expect = 2e-09
Identities = 62/271 (22%), Positives = 96/271 (34%), Gaps = 40/271 (14%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-----RQDNPPPAEISRTXXXXXX 75
G +G G V+F AI +G LN + +FV RQD
Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR--------------- 213
Query: 76 XXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMA 135
A V+V LP + ELK F GD+ A V+ D+ G SR FG V
Sbjct: 214 ARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFV 273
Query: 136 TKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPL 195
+ E A+ G VL V + S R R R E
Sbjct: 274 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKL-------- 325
Query: 196 DIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYC 255
+ S ++ +N+ S + L ++F V K+++N +G +
Sbjct: 326 ------------QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373
Query: 256 QFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ PE+A + + +++ G L V A+
Sbjct: 374 AYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
Score = 53.5 bits (127), Expect = 3e-07
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV--- 56
+K+ FGK G++ A ++ + G+ R G V F + A+ +G L ++V
Sbjct: 241 LKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
++ + E+ R K +G +++ L SVN ++LK+MF G+V
Sbjct: 301 QKKSDREEELRRKFEQERISRFEKL---QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 357
Query: 117 DVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
V+ + G SRGFG V + E+ A++ G
Sbjct: 358 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG 390
Score = 53.1 bits (126), Expect = 4e-07
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 48/266 (18%)
Query: 23 HRGMGT--VEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXK 80
HR +G V F N D A+ + A + R I + N P+
Sbjct: 82 HRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPST--------------- 126
Query: 81 RAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQ 140
R +G VF+ L S++ + L + F G +L V D G+S+G+G V +E
Sbjct: 127 RLSGKG-NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 141 NDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPL 200
AI + G +L+ K+ ++ RQ R + P +
Sbjct: 186 QAAI-----DKLNGMLLNDKQ----------VFVGHFVRRQDRARSESGAVPSFTN---- 226
Query: 201 AITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETP 260
++ +N+P T+ +L FG + ++ + G+ + F +P
Sbjct: 227 -----------VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275
Query: 261 EDADICISKLDKYSYGDHELKVTYAR 286
E A + + K++ S G+ L V A+
Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQ 301
Score = 36.6 bits (83), Expect = 0.043
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
NS ++ ++ S ES L DLF VAPV ++ + +Y F PEDA +
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 103
Query: 269 KLDKYSYGDHELKV 282
L+ D +++
Sbjct: 104 SLNYAPIRDRPIRI 117
Score = 31.6 bits (70), Expect = 1.4
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MKEYFGKIGEVRRADII-TSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+KE F + G V ++ S+G RG G V ++N + A+++ +G + + ++V
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 400
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 61.2 bits (147), Expect = 2e-09
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR-QDNPPPAEISRTXXXXXXXXXX 79
G RG V +N D + I + DG GRA+ V D P P +
Sbjct: 123 GQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNK-------------E 169
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKE 138
+ ++FV L ++V + L F+ CGDV+ A VV D D G+SRG+G V ++K
Sbjct: 170 PLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229
Query: 139 QQNDAIRHWTGTEYKGRVLDVKEGKG 164
+ A+ G E +GR + V +G
Sbjct: 230 EMETALESLDGFELEGRAIRVNLAQG 255
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
+++ LP++V+ L + + + +V+ +RD G+SRGF V M+ E N I +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 147 WTGTEYKGRVLDV 159
GTEY GR L V
Sbjct: 146 LDGTEYLGRALKV 158
Score = 28.9 bits (63), Expect = 8.9
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPEDADICI 267
N+ ++ N+P + + L + A + ++L N + +R ++ ED +I I
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 268 SKLDKYSYGDHELKVTYA 285
LD Y LKV +A
Sbjct: 144 DNLDGTEYLGRALKVNFA 161
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 60.8 bits (146), Expect = 2e-09
Identities = 63/302 (20%), Positives = 124/302 (40%), Gaps = 36/302 (11%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ F IGEV A +I + GH G G V + + D + AI +G L + I V
Sbjct: 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
P I + ++++ LP ++ ++++DMF G ++++ V
Sbjct: 96 ARPSSEVI------------------KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 119 VTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGR----VLDVKEGKGTSTRTAATG 173
+ D+ G SRG + + + +AI + G + G + + A
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPIAVKFAANPNQNKNVALLS 197
Query: 174 ADTYIPRQ----PRNEPPATLKPKPLDIDPLAITTG----GDRNS--VIFCENMPSSTTE 223
+ P + P + + P+ +D ++ +G G+ +S IF N+ E
Sbjct: 198 QLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADE 257
Query: 224 SDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPEDADICISKLDKYSYGDHELKV 282
L+ +FG V K++ + + + + E+A + I+ L+ Y GD L+V
Sbjct: 258 GILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
Query: 283 TY 284
++
Sbjct: 318 SF 319
Score = 36.6 bits (83), Expect = 0.043
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 217 MPSSTTESDLYDLFGSVAPVIITKLLLNP-EGHFTRNSYCQFETPEDADICISKLDKYSY 275
+P + T+ +L LF S+ V KL+ + GH + + T +DA+ I+ L+
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 276 GDHELKVTYAR 286
+KV+YAR
Sbjct: 87 QSKTIKVSYAR 97
Score = 36.2 bits (82), Expect = 0.056
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
+ V LP ++ EL+ +F G+V A ++ D+ G S G+G V T + AI
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPR 183
G + + + V + +S A+ YI PR
Sbjct: 82 NGLRLQSKTIKVSYARPSS--EVIKDANLYISGLPR 115
>At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 599
Score = 60.8 bits (146), Expect = 2e-09
Identities = 60/279 (21%), Positives = 109/279 (38%), Gaps = 29/279 (10%)
Query: 3 EYFGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN- 60
++F K+GEV R +I + +G G G VEF + + + A++ +G L+ IF+ N
Sbjct: 73 DFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANK 132
Query: 61 -----PPPAEISRTXXXXXXXXXXKRAHDEGFE--------VFVAQLPFSVNWQELKDMF 107
PP I +E +FVA L ++ D F
Sbjct: 133 KATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLFVANLSPQTKISDIFDFF 192
Query: 108 KPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTST 167
G+V+ ++ + +GK G+G V A+ ++ A+ + G + + K
Sbjct: 193 NCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAKTAP- 251
Query: 168 RTAATGADTYIPRQPRNEPPATLKPKPLDID---PLAITTGGDRNSVIFCENMPSSTTES 224
P P E + P+D D P + G R +F ++ T +
Sbjct: 252 ----------YPPGPNYEDYLRRESLPIDEDETPPEFVEAVGVRKKTLFVAHLSRKTEIT 301
Query: 225 DLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDA 263
+ + F V V+ +L+LN G ++ +F + +A
Sbjct: 302 HIINFFKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEA 340
Score = 58.5 bits (140), Expect = 1e-08
Identities = 45/200 (22%), Positives = 84/200 (41%), Gaps = 10/200 (5%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+FVA LP+ + D FK G+V+ ++ + GK G G V A+ + +A++
Sbjct: 57 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 116
Query: 149 GT--EYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGG 206
G + LDV K T I + ++ L+ P++ D
Sbjct: 117 GECLDNNKIFLDVANKKATYLPPKYC-----IDHKVWDKDYRRLESHPIEEDE---RPPN 168
Query: 207 DRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADIC 266
V+F N+ T SD++D F V V+ +L++N EG + +F + ++
Sbjct: 169 SVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKA 228
Query: 267 ISKLDKYSYGDHELKVTYAR 286
+ + DH++ + A+
Sbjct: 229 LENKNGEYLHDHKIFIDVAK 248
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 3 EYFGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++F + EV R +I + RG H G G VEF + + A++ +G L R IF+
Sbjct: 435 KFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMNGENLRSREIFL 489
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/86 (20%), Positives = 36/86 (40%)
Query: 184 NEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLL 243
N+ T K + + R +F N+P T ++ D F V V+ +L++
Sbjct: 29 NKKKVTTKAIAFSLQQNDLLEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIV 88
Query: 244 NPEGHFTRNSYCQFETPEDADICISK 269
N +G + +F + +A+ + K
Sbjct: 89 NLKGKLVGCGFVEFASVNEAEEALQK 114
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/144 (27%), Positives = 65/144 (44%), Gaps = 1/144 (0%)
Query: 2 KEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+E F K G + A + G +G G V + D A+ + + LNG ++V +
Sbjct: 236 QELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ K A +G +FV L SV+ ++L++ F P G + A V+
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 121 DRDGKSRGFGTVYMATKEQQNDAI 144
+GKS+GFG V +T E+ AI
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAI 379
Score = 54.3 bits (129), Expect = 2e-07
Identities = 63/286 (22%), Positives = 108/286 (37%), Gaps = 37/286 (12%)
Query: 5 FGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPP 63
F G++ + I T G +G G V F AI +G LNG+ I+V
Sbjct: 146 FSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP----- 200
Query: 64 AEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD 123
+SR +AH ++V + ++ +++F G ++ A + D D
Sbjct: 201 -HLSRKERDSQLEET--KAHYTN--LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD 255
Query: 124 GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR-QP 182
GK +GFG V E A+ +E G L Y+ R Q
Sbjct: 256 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL-------------------YVGRAQK 296
Query: 183 RNEPPATLKP--KPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
+NE LK + ++ +A G + +F +N+ S + L + F + K
Sbjct: 297 KNERMHVLKKQYEAYRLEKMAKYQGVN----LFVKNLDDSVDDEKLEEEFAPYGTITSAK 352
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
++ G + F TPE+A I++ ++ L V A+
Sbjct: 353 VMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+F+ L ++ + L D F GD+L + + TD +GKS+GFG V+ + +AI
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G G+ + V P R E + L+ L
Sbjct: 188 GMLLNGQEIYV------------------APHLSRKERDSQLEETKAHYTNL-------- 221
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
+ +N+ S TT+ +LF P++ L + +G + +E EDA +
Sbjct: 222 ----YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVE 277
Query: 269 KLDKYSYGDHELKVTYAR 286
L+ +L V A+
Sbjct: 278 ALNDSELNGEKLYVGRAQ 295
Score = 30.0 bits (66), Expect = 4.0
Identities = 45/195 (23%), Positives = 65/195 (33%), Gaps = 37/195 (18%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGK-SRGFGTVYMATKEQQNDAIRHW 147
++V L SV+ L D+F P G V V D K S G+ V E AI
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
T KGR+ + + R P +L+ K G
Sbjct: 100 NYTPIKGRLCRI----------------MWSQRDP------SLRKK------------GS 125
Query: 208 RNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICI 267
N IF +N+ LYD F ++ +K+ + G + FE A I
Sbjct: 126 GN--IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 268 SKLDKYSYGDHELKV 282
L+ E+ V
Sbjct: 184 DALNGMLLNGQEIYV 198
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 60.1 bits (144), Expect = 4e-09
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+++ F K G + +++T G +G G V F N + +TA++ + + G + +
Sbjct: 229 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH--- 285
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDE----------GFEVFVAQLPFSVNWQELKDMFKPC 110
+ R K+ H++ G ++V L +V+ LK F+
Sbjct: 286 -----VCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESY 340
Query: 111 GDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
G++ A V+TD +G+S+GFG V E+ A+
Sbjct: 341 GNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
Score = 50.4 bits (119), Expect = 3e-06
Identities = 61/282 (21%), Positives = 108/282 (37%), Gaps = 31/282 (10%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
FG I + A I G +G G V F AI+ +G L G+ +FV + P A
Sbjct: 143 FGNILSCKVA--IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR-A 199
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG 124
+ +R V+V N + L+ +F G++ +V+T +G
Sbjct: 200 QRNRELGETAKQFT---------NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EG 249
Query: 125 KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRN 184
KS+GFG V A E+ A++ + +G L + + Q ++
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRA----------------QKKS 293
Query: 185 EPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLN 244
E A LK K + N ++ +N+ + + L F S + K++ +
Sbjct: 294 ERHAELKKKHEQHKAERMQKYQGVN--LYVKNLDETVDDDGLKKQFESYGNITSAKVMTD 351
Query: 245 PEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
G + FE PE+A +++++ L V A+
Sbjct: 352 ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 393
Score = 42.0 bits (97), Expect = 0.001
Identities = 55/262 (20%), Positives = 94/262 (34%), Gaps = 47/262 (17%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD 84
G V F D + A+ + L+G+ + + PA R
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPA---------------MRRSG 118
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
G +F+ L ++ + + D F G++L V D DG S+G+G V+ T+E +AI
Sbjct: 119 AG-NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAI 177
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITT 204
+ G G+ + V GK + PR RN L T
Sbjct: 178 QKVNGMLLAGKKVFV--GK-------------FQPRAQRNR-------------ELGETA 209
Query: 205 GGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
N ++ +N + L LF + + ++ EG + F PE+A+
Sbjct: 210 KQFTN--VYVKNFGDHYNKETLEKLFAKFGNITSCE-VMTVEGKSKGFGFVAFANPEEAE 266
Query: 265 ICISKLDKYSYGDHELKVTYAR 286
+ L + +LK+ R
Sbjct: 267 TAVQALHDSTIEGTDLKLHVCR 288
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 59.7 bits (143), Expect = 5e-09
Identities = 73/288 (25%), Positives = 112/288 (38%), Gaps = 44/288 (15%)
Query: 5 FGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
FG GE A +I ++ G+ G G +EF N + ++ +GA P
Sbjct: 100 FGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGA-------------PM 146
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFE--VFVAQLPFSVNWQELKDMFKPC-GDVLHADVV 119
P+ +R EG E VFV L V L + FK V A VV
Sbjct: 147 PSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV 206
Query: 120 TDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYI 178
DR G+S+G+G V A + +Q A+ TE G+ S+R TG
Sbjct: 207 NDRTTGRSKGYGFVRFADESEQIRAM-----TEMNGQYC--------SSRPMRTGPAA-- 251
Query: 179 PRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVII 238
N+ P T++P N+ IF + S TE DL +FG ++
Sbjct: 252 -----NKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVH 306
Query: 239 TKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
K+ P G R + Q+ A+ +S L+ G +++++ R
Sbjct: 307 VKI---PAG--KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 59.3 bits (142), Expect = 6e-09
Identities = 61/284 (21%), Positives = 108/284 (37%), Gaps = 32/284 (11%)
Query: 5 FGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPP 63
F G + + T +G+ +G G V F +T+I +G LNG+ ++V + P
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 64 AEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD 123
V+V + ++LK+ F+P G + V++ D
Sbjct: 170 EREKELGEKAKLFT----------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED 219
Query: 124 GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR-QP 182
GKS+GFG V T E A++ G D+ EGK Y+ R Q
Sbjct: 220 GKSKGFGFVAFETTEAAEAAVQALNGK-------DMGEGK-----------SLYVARAQK 261
Query: 183 RNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLL 242
+ E LK K ++ + N ++ +N+ + + L F + K++
Sbjct: 262 KAERQQELKRKFEELKQKRHESVFGVN--LYVKNLDDTIDDDRLRIAFSPYGNITSAKVM 319
Query: 243 LNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ EG + F +A +++L+ G L V A+
Sbjct: 320 TDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/164 (25%), Positives = 78/164 (46%), Gaps = 11/164 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLN-GRAIFVRQ 58
+KE+F G++ +++ G +G G V F + + A++ +G + G++++V +
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDE--GFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
AE + KR H+ G ++V L +++ L+ F P G++ A
Sbjct: 259 AQKK-AERQQELKRKFEELKQKR-HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSA 316
Query: 117 DVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
V+TD +G+S+GFG V + A+ TE GRV+ K
Sbjct: 317 KVMTDEEGRSKGFGFVCFNAASEATCAV-----TELNGRVVGSK 355
Score = 48.5 bits (114), Expect = 1e-05
Identities = 43/189 (22%), Positives = 74/189 (38%), Gaps = 30/189 (15%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
VF+ L +++ + + D F G++L V TD G S+G+G V+ T+E N +I
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G G+ + V GK +IPR+ R K L T
Sbjct: 152 GMLLNGKKVYV--GK-------------FIPRKERE--------KELGEKAKLFTN---- 184
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
++ +N + L + F + K++ +G + FET E A+ +
Sbjct: 185 ---VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 269 KLDKYSYGD 277
L+ G+
Sbjct: 242 ALNGKDMGE 250
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNS----YCQFETPEDADICI 267
++ ++P ES L+D F S PV+ ++ + TR S Y F+ P DA+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDV---ITRRSLGYAYVNFQQPADAERAL 60
Query: 268 SKLD 271
++
Sbjct: 61 DTMN 64
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 58.5 bits (140), Expect = 1e-08
Identities = 61/278 (21%), Positives = 108/278 (37%), Gaps = 45/278 (16%)
Query: 1 MKEYFGKIGEVRRADI-ITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR-- 57
+ E F G + + + G +G G V+++ AI +G LN + ++V
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPF 208
Query: 58 ----QDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDV 113
Q +P ++ T V+V L S++ +EL +F G
Sbjct: 209 VHKLQRDPSGEKVKFT------------------NVYVKNLSESLSDEELNKVFGEFGVT 250
Query: 114 LHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATG 173
++ D +GKS+GFG V E +DA R +D GK + G
Sbjct: 251 TSCVIMRDGEGKSKGFGFVNF---ENSDDA----------ARAVDALNGKTFDDKEWFVG 297
Query: 174 ADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSV 233
Q ++E LK K L + S ++ +N+ S T+ L + F
Sbjct: 298 K-----AQKKSERETELKQK--FEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPF 350
Query: 234 APVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLD 271
+ K++ +P G + + F TPE+A I++++
Sbjct: 351 GTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Score = 57.4 bits (137), Expect = 2e-08
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 2/189 (1%)
Query: 1 MKEYFGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+ + FG+ G I+ G +G G V F NS D A+ +G + + FV +
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ +G ++V L SV +L++ F P G + V+
Sbjct: 300 QKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVM 359
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIP 179
D G SRG G V +T E+ AI G + L V + R A A +
Sbjct: 360 RDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQ-FSQ 418
Query: 180 RQPRNEPPA 188
+P N PPA
Sbjct: 419 MRPVNMPPA 427
Score = 48.9 bits (115), Expect = 8e-06
Identities = 58/275 (21%), Positives = 100/275 (36%), Gaps = 51/275 (18%)
Query: 6 GKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAE 65
G++ VR +T+R G G V + D A+ + + LNGRAI V P+
Sbjct: 69 GQVVSVRVCRDMTTR-RSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPS- 126
Query: 66 ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGK 125
R G +F+ L S++ + L + F G +L V D G+
Sbjct: 127 --------------LRKSGVG-NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQ 171
Query: 126 SRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTY-IPRQPRN 184
S+G+G V T E AI D G + + G + + R P
Sbjct: 172 SKGYGFVQYDTDEAAQGAI-------------DKLNGMLLNDKQVYVGPFVHKLQRDPSG 218
Query: 185 EPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLN 244
E + + ++ +N+ S ++ +L +FG ++ +
Sbjct: 219 EKV--------------------KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD 258
Query: 245 PEGHFTRNSYCQFETPEDADICISKLDKYSYGDHE 279
EG + FE +DA + L+ ++ D E
Sbjct: 259 GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 42.7 bits (99), Expect = 6e-04
Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 37/195 (18%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGK-SRGFGTVYMATKEQQNDAIRHW 147
++V L +V +L + F G V+ V D + S G+G V AT + + A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
GR + V Y R P ++ G
Sbjct: 107 NFMALNGRAIRVM----------------YSVRDP------------------SLRKSGV 132
Query: 208 RNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICI 267
N IF +N+ S L++ F + P++ K+ ++P G + Q++T E A I
Sbjct: 133 GN--IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAI 190
Query: 268 SKLDKYSYGDHELKV 282
KL+ D ++ V
Sbjct: 191 DKLNGMLLNDKQVYV 205
Score = 28.9 bits (63), Expect = 8.9
Identities = 16/78 (20%), Positives = 39/78 (49%), Gaps = 7/78 (8%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNS----YCQFETPEDADICI 267
++ ++ ++ T+S L++ F V+ ++ + TR S Y + TP+DA +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMT---TRRSLGYGYVNYATPQDASRAL 103
Query: 268 SKLDKYSYGDHELKVTYA 285
++L+ + ++V Y+
Sbjct: 104 NELNFMALNGRAIRVMYS 121
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 58.2 bits (139), Expect = 1e-08
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 33/192 (17%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++++ L S++ + + D F G++L+ +V D DG SRG+G V+ ++E AI
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
G + + V + +IPR+ R + AT
Sbjct: 174 NGMLCNNQKVHVVK---------------FIPRRDREQEKAT------------------ 200
Query: 208 RNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICI 267
++ +N+ TE L ++F + KL+L+ EG R + +E P+ A +
Sbjct: 201 HFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAV 260
Query: 268 SKLDKYSYGDHE 279
L GD++
Sbjct: 261 IGLHGKQLGDNK 272
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 57.8 bits (138), Expect = 2e-08
Identities = 67/317 (21%), Positives = 118/317 (37%), Gaps = 52/317 (16%)
Query: 1 MKEYFGKIGEVRRADIITS--RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+ +F +G ++ A ++T+ G +RG G V F+ D A ++ L+GR + R
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRIL--RL 78
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNW-QELKDMFKPCGDVLHAD 117
D P + S D + + LP+S+ Q L+ F G V
Sbjct: 79 DFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIK 138
Query: 118 VVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV------------------ 159
+ T G+ GF V+M ++ +A+ GTE GR + V
Sbjct: 139 IPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDAS 198
Query: 160 --KEGK------GTSTRTAATGADTYIPRQ-----PRNEPPATLKPKPLDIDPLAIT--T 204
+E K G S T AD+ + E + + ++D + + +
Sbjct: 199 SEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGESEEEGSNVDDVEDSGDS 258
Query: 205 GGDRNSV-------------IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNP-EGHFT 250
D+NS+ +F N+ TE +LY+ F P+ KL+ +P
Sbjct: 259 SSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSL 318
Query: 251 RNSYCQFETPEDADICI 267
+ +F +D C+
Sbjct: 319 GRGFIKFRYEKDCQNCL 335
Score = 39.3 bits (90), Expect = 0.007
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
+FV L F +L + F G + HA VVT+ + G++RG+G V + E A +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 148 TGTEYKGRVL 157
+ GR+L
Sbjct: 67 KNKKLHGRIL 76
Score = 33.9 bits (76), Expect = 0.28
Identities = 21/78 (26%), Positives = 33/78 (41%), Gaps = 1/78 (1%)
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADICI 267
NS +F N+ T + DL + F V P+ ++ NPE G + F EDA
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 268 SKLDKYSYGDHELKVTYA 285
+L L++ +A
Sbjct: 64 KELKNKKLHGRILRLDFA 81
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 57.0 bits (136), Expect = 3e-08
Identities = 68/317 (21%), Positives = 121/317 (37%), Gaps = 53/317 (16%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K FG IGE+ ++ + G G G V + + D + AI +G L + I V
Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
P A I ++V+ LP ++ +EL+ +F G ++ + +
Sbjct: 115 ARPSSASI------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 119 VTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRV--LDVKEGKGTSTRT-AATGA 174
+ D+ G SRG G + + + +AI+ G + G + VK S +T A +
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILS 216
Query: 175 DTYIPRQPRNEPPATLKPK--------------------PLDIDPLAITTG------GDR 208
Y + P P L + P+ ID + G
Sbjct: 217 QLY--QSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPEDADICI 267
IF N+ ES L+ +FG V K++ + + + + ++A + I
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 268 SKLDKYSYGDHELKVTY 284
L+ Y GD L+V++
Sbjct: 335 RSLNGYRLGDRVLQVSF 351
Score = 35.4 bits (80), Expect = 0.095
Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 1/81 (1%)
Query: 207 DRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNP-EGHFTRNSYCQFETPEDADI 265
D + + +P + T+ +L LFGS+ + KL+ + G + + P+DA+
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 266 CISKLDKYSYGDHELKVTYAR 286
I+ L+ +KV+YAR
Sbjct: 96 AINTLNGLRLQTKTIKVSYAR 116
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 40/190 (21%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQND 142
D + V LP ++ +ELK +F G++ +V D+ G+S G+G V +
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAI 202
AI G + + + V + +S
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASI--------------------------------- 122
Query: 203 TTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPE 261
R++ ++ +P + T+ +L LF +I +++L++ +R + +F+
Sbjct: 123 -----RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 262 DADICISKLD 271
+A+ I L+
Sbjct: 178 EAEEAIKGLN 187
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 57.0 bits (136), Expect = 3e-08
Identities = 61/285 (21%), Positives = 106/285 (36%), Gaps = 36/285 (12%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
+ F +IG + +IT + VEF D A+ +G + G+ + V P
Sbjct: 27 QLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 86
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD- 121
++ K+ F VFV L + +++K F P G + A VV D
Sbjct: 87 SSQ--------------KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDM 132
Query: 122 RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQ 181
GKS+G+G V K +AI H G GR ++ T A +Q
Sbjct: 133 ATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR--QIRTNWATRKPPAPKSTQENNTKQ 190
Query: 182 PRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKL 241
R E + +N ++C + S T+ + F ++ ++
Sbjct: 191 LRFED--------------VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EI 234
Query: 242 LLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ PE + S+ +F T E A I ++ + H +K + +
Sbjct: 235 RVFPEKGY---SFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 45.4 bits (106), Expect = 9e-05
Identities = 40/169 (23%), Positives = 65/169 (37%), Gaps = 10/169 (5%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAI----FVRQDN 60
FGKI + R + + G +G G V F N D + AI G +L GR I R+
Sbjct: 120 FGKISDARVVKDMAT-GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P + ++ + V+ + + Q ++ F P G ++ V
Sbjct: 179 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 238
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRT 169
+ +G+ V +T E AI GT +G V+ GK + T
Sbjct: 239 E-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 282
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 57.0 bits (136), Expect = 3e-08
Identities = 67/318 (21%), Positives = 124/318 (38%), Gaps = 57/318 (17%)
Query: 2 KEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
K FG IG++ ++ + G G G V + + D D AI +G L + I V
Sbjct: 56 KSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDADKAINTLNGLKLQTKTIKVSYA 115
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
P A I ++V+ LP +++ +E++ +F G ++ + ++
Sbjct: 116 RPSSASI------------------RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 120 TDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV----------KEGKGTSTR 168
D+ G SRG G + + + +AI+ G + G + K G+ T
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTH 217
Query: 169 TAATGADTY---IPRQPR--------NEPPATLKPKPLDIDPLA------ITTGGDRNSV 211
+ A Y + Q + N + P+ ID ++ ++ G
Sbjct: 218 LYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGGWC 277
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-----SYCQFETPEDADIC 266
IF N+ ES L+ LFG V K++ + FT N + ++A +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRD----FTTNKCKGFGFVTMTNYDEAAMA 333
Query: 267 ISKLDKYSYGDHELKVTY 284
I+ L+ Y + L+V++
Sbjct: 334 IASLNGYRLAERVLQVSF 351
Score = 37.4 bits (85), Expect = 0.025
Identities = 25/91 (27%), Positives = 41/91 (44%), Gaps = 3/91 (3%)
Query: 199 PLAITTGG--DRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNP-EGHFTRNSYC 255
PL T G D + + +P + T+ + LFGS+ + KL+ + G +
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFV 85
Query: 256 QFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ P DAD I+ L+ +KV+YAR
Sbjct: 86 NYPDPNDADKAINTLNGLKLQTKTIKVSYAR 116
>SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 55.5 bits (132), Expect = 9e-08
Identities = 46/190 (24%), Positives = 80/190 (41%), Gaps = 10/190 (5%)
Query: 3 EYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++F + G VR A I+ + G +G+ VEF + V AI G L G + V+
Sbjct: 258 DFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-LSGKRLLGLPVIVQLTE 316
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
AE +R A + V+ + F++ +++K +F+P GD+ +
Sbjct: 317 ---AEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQR 373
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGA----DT 176
D +S+GFG + +A+ G + GR + V G T + D
Sbjct: 374 DDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDE 433
Query: 177 YIPRQPRNEP 186
+ RQ R++P
Sbjct: 434 TLARQERSQP 443
Score = 33.5 bits (75), Expect = 0.36
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 25/195 (12%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
VFV+QL + +EL D F+ G V A +V D+ G+S+G V ++ AI
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
+G G + V+ + R A A+ + R E P L ++
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAE--LARAASAEIP---------FHRLCVS---- 345
Query: 208 RNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICI 267
N+ + T+ D+ +F + L + + Y Q+ P A +
Sbjct: 346 --------NIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNAL 397
Query: 268 SKLDKYSYGDHELKV 282
K++ + ++V
Sbjct: 398 EKMNGFDLAGRNMRV 412
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 55.5 bits (132), Expect = 9e-08
Identities = 40/161 (24%), Positives = 72/161 (43%), Gaps = 10/161 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+ FG V+ ++T G +G G V F D A+ + +G LNG+ I+V +
Sbjct: 207 LKDLFGPALSVK---VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 263
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ + +G ++V L ++ + L+ F P G + A V+
Sbjct: 264 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 323
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
+ G+S+GFG V ++ E+ A+ TE GR++ K
Sbjct: 324 ME-GGRSKGFGFVCFSSPEEATKAV-----TEMNGRIVATK 358
Score = 55.5 bits (132), Expect = 9e-08
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
F G + ++ +G G V F + AI +G LN R +FV +
Sbjct: 119 FSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK---- 174
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG 124
SR K E V++ ++ + LKD+F P L V+TD G
Sbjct: 175 --SRKEREAELGARAK----EFTNVYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESG 225
Query: 125 KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
KS+GFG V E A+ G E G+ + V
Sbjct: 226 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
Score = 47.4 bits (111), Expect = 2e-05
Identities = 55/257 (21%), Positives = 91/257 (35%), Gaps = 52/257 (20%)
Query: 15 DIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXX 74
D+IT R G V F D + A+ + + G+ + + P+
Sbjct: 45 DMITRRS--LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS---------- 92
Query: 75 XXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYM 134
R G +F+ L S++ + L D F G++L VV D +G S+G+G V+
Sbjct: 93 -----LRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 145
Query: 135 ATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKP 194
T+E AI G R + V K R A GA
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA-------------------- 185
Query: 195 LDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSY 254
+ ++ +N + L DLFG P + K++ + G +
Sbjct: 186 ----------RAKEFTNVYIKNFGEDMDDERLKDLFG---PALSVKVMTDESGKSKGFGF 232
Query: 255 CQFETPEDADICISKLD 271
FE EDA + +++
Sbjct: 233 VSFERHEDAQKAVDEMN 249
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 55.5 bits (132), Expect = 9e-08
Identities = 59/285 (20%), Positives = 107/285 (36%), Gaps = 25/285 (8%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
+ F +IG + +I + VEF+ A+ +G + G+ + V P
Sbjct: 25 QLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTP 84
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD- 121
++ T + H F VFV L + +++K F P G + A VV D
Sbjct: 85 SSQKKDTSSSTVVSTQRSQDH---FHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDM 141
Query: 122 RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQ 181
GKS+G+G V K +AI+ G GR + T T P
Sbjct: 142 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI-------------RTNWATRKPPA 188
Query: 182 PRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKL 241
P++ + K D + N ++C + S TE + F ++ ++
Sbjct: 189 PKSTYESNTKQLSYD---EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM--EI 243
Query: 242 LLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ P+ + S+ +F + E A I ++ + H +K + +
Sbjct: 244 RVFPDKGY---SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 45.4 bits (106), Expect = 9e-05
Identities = 39/165 (23%), Positives = 63/165 (37%), Gaps = 10/165 (6%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAI----FVRQDN 60
FG+I + R + + G +G G V F N D + AI+ G +L GR I R+
Sbjct: 129 FGRISDARVVKDMAT-GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P + ++ V+ + + Q ++ F P G ++ V
Sbjct: 188 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGT 165
D +G+ V + E AI GT +G V+ GK T
Sbjct: 248 D-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKET 287
>ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 293
Score = 55.5 bits (132), Expect = 9e-08
Identities = 41/148 (27%), Positives = 66/148 (43%), Gaps = 23/148 (15%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K KIG+V R I + H R G G VEF DV A++ DG GR + V
Sbjct: 103 LKSEMEKIGKVARVGIPMTNDHKRNKGFGYVEFCKEEDVKKALK-LDGTVFLGREVVVNM 161
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
+P RA+ E ++V+ +P+ + ++LK F+ G+V+ +
Sbjct: 162 AHP-------------------RANKERHTIYVSNIPYECDKRDLKKYFEGMGEVVGMSL 202
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIR 145
DRD + +G+G V KE ++
Sbjct: 203 PYDRDNNRLKGYGFVDFGNKEDYERVLK 230
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 55.1 bits (131), Expect = 1e-07
Identities = 28/78 (35%), Positives = 44/78 (55%), Gaps = 1/78 (1%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIR 145
+ FV L ++ N ++L+ F GDV+ + ++ DR+ G+SRGFG V ++ DAI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 146 HWTGTEYKGRVLDVKEGK 163
G E GRV+ V E +
Sbjct: 66 EMNGKELDGRVITVNEAQ 83
Score = 33.9 bits (76), Expect = 0.28
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ F + G+V + II R G RG G V F + + AI + +G L+GR I V +
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 55.1 bits (131), Expect = 1e-07
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 1/160 (0%)
Query: 1 MKEYFGKIGEVRRADIITSRGHH-RGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
++E F + G++ I RG V F+N D A +G + ++V +
Sbjct: 217 LREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
++ + ++V + +V +EL+ F CG + ++
Sbjct: 277 QKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLM 336
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
D GKS+GFG V +T E+ DA++ + G + G+ L V
Sbjct: 337 CDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
Score = 50.4 bits (119), Expect = 3e-06
Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 52/269 (19%)
Query: 19 SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXX 78
S G G F + D + AI + + LNG+ I V P
Sbjct: 60 SSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAP--------------- 104
Query: 79 XKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKE 138
R + G VFV LP SV L+DMFK G+++ V T DGKSRG+G V ++
Sbjct: 105 DARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQED 163
Query: 139 QQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDID 198
+ AI+ T T + Y+ + + T + KP
Sbjct: 164 AAHAAIQ-------------------TLNSTIVADKEIYVGKFMKK----TDRVKP---- 196
Query: 199 PLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQF 257
++ + ++ +N+ + +E L + F I++ + E R ++ F
Sbjct: 197 -------EEKYTNLYMKNLDADVSEDLLREKFAEFGK-IVSLAIAKDENRLCRGYAFVNF 248
Query: 258 ETPEDADICISKLDKYSYGDHELKVTYAR 286
+ PEDA ++ +G L V A+
Sbjct: 249 DNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
Score = 42.0 bits (97), Expect = 0.001
Identities = 50/264 (18%), Positives = 98/264 (36%), Gaps = 35/264 (13%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+++ F K G + + T G RG G V+F AI+ + + + I+V +
Sbjct: 128 LQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKF 187
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ + ++ +++ L V+ L++ F G ++ +
Sbjct: 188 MKKTDRV--------------KPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA 233
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIP 179
D + RG+ V E A GT++ + L V + + R + +
Sbjct: 234 KDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAER------EQLLR 287
Query: 180 RQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIIT 239
Q K K + +A + S I+ +N+ + TE +L F + T
Sbjct: 288 EQ--------FKEKHEEQKMIA------KVSNIYVKNVNVAVTEEELRKHFSQCGTITST 333
Query: 240 KLLLNPEGHFTRNSYCQFETPEDA 263
KL+ + +G + F TPE+A
Sbjct: 334 KLMCDEKGKSKGFGFVCFSTPEEA 357
>At1g09140 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 253
Score = 55.1 bits (131), Expect = 1e-07
Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 19/188 (10%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV------RQDNPPPAEISRTXXXXXXXXX 78
G VEF + D D AI DG +G + V R+ +P + R
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGRRFSP---SVDRYSSSYSASRA 102
Query: 79 XKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKE 138
R D + V V LP S +WQ+LKD + GDV ++V DR G S G V + +
Sbjct: 103 PSRRSD--YRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMS---GVVDYSNYD 157
Query: 139 QQNDAIRHWTGTEYK----GRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKP 194
AIR TE++ + V+E + S + + +Y R R+ L P P
Sbjct: 158 DMKYAIRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSYRSRS-RSRVCHLLDPFP 216
Query: 195 LDIDPLAI 202
PL +
Sbjct: 217 RVHGPLVV 224
Score = 38.1 bits (87), Expect = 0.015
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLL--NPEGHFTRNSYCQFETPEDADIC 266
N I+ N+P + ++ DLF P++ L + P G+ ++ +FE P DAD
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGY----AFVEFEDPRDADDA 61
Query: 267 ISKLDKYSYGDHELKVTYA 285
I D Y + L+V A
Sbjct: 62 IYGRDGYDFDGCRLRVEIA 80
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 54.7 bits (130), Expect = 2e-07
Identities = 48/195 (24%), Positives = 77/195 (38%), Gaps = 30/195 (15%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-RQDNPPP 63
F +G+V +I V F N D + AIR+ L+ R I V ++D PP
Sbjct: 34 FSNVGKVLSVKLIKRAEPVSSFAFVTFENEEDAERAIREYKHYELHNRQIRVMKKDERPP 93
Query: 64 AEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD 123
E +FV LP ++L D F G+++ V T
Sbjct: 94 ---------------------ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSH 132
Query: 124 GKSRGFGTVYMATKEQQNDAIRHWT--------GTEYKGRVLDVKEGKGTSTRTAATGAD 175
GKS+G+G V K+ I++++ G + + + KG S +T+AT +
Sbjct: 133 GKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTN 192
Query: 176 TYIPRQPRNEPPATL 190
+I P + A L
Sbjct: 193 CFIKNFPFDASEAEL 207
Score = 53.1 bits (126), Expect = 4e-07
Identities = 62/288 (21%), Positives = 104/288 (35%), Gaps = 30/288 (10%)
Query: 1 MKEYFGKIGEVRRADIIT-SRGHHRGMGTVEFNNSTDVDTAIRD---CDGAFLNGRAIFV 56
+ + F GE+ + T S G +G G V+F I++ DG L G I V
Sbjct: 112 LDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV 171
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
NP EI + K+ F+ PF + EL ++ + G V
Sbjct: 172 ELYNP---EIKK--------GESKKTSATFTNCFIKNFPFDASEAELLELLERYGKVTSL 220
Query: 117 DVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADT 176
+GK +GF E +AI++ GT G D TG
Sbjct: 221 FFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRD------------GTGEAF 268
Query: 177 YIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPV 236
YI + R E A K + + G ++ N+P +L +F +
Sbjct: 269 YIQKGQRKEERAEELRKMFEQMSM---QGQSYKKNLYITNIPEGFGCEELGSIFKEFGNI 325
Query: 237 IITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTY 284
+ ++ + +Y + TPE+A I + + ++ + L+V Y
Sbjct: 326 TSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAY 373
Score = 34.3 bits (77), Expect = 0.21
Identities = 19/71 (26%), Positives = 36/71 (49%), Gaps = 1/71 (1%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLD 271
I+ + T +SDL+ +F +V V+ KL+ E + ++ FE EDA+ I +
Sbjct: 16 IYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAE-PVSSFAFVTFENEEDAERAIREYK 74
Query: 272 KYSYGDHELKV 282
Y + +++V
Sbjct: 75 HYELHNRQIRV 85
Score = 29.6 bits (65), Expect = 5.2
Identities = 43/206 (20%), Positives = 66/206 (31%), Gaps = 44/206 (21%)
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQ 139
KRA + ++V +L +L +F G VL ++ + S F V +E
Sbjct: 7 KRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEED 65
Query: 140 QNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDP 199
AIR + E R + V + PP T
Sbjct: 66 AERAIREYKHYELHNRQIRVMKKD--------------------ERPPET---------- 95
Query: 200 LAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFET 259
IF +N+P T DL D F ++ K+ G + QF+
Sbjct: 96 ----------GNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKE 145
Query: 260 PEDADICI---SKLDKYSYGDHELKV 282
+ A I S LD G + + V
Sbjct: 146 KKAAKKVIKNFSSLDGLLLGGNRIVV 171
>At5g40490 [R] KOG0118 FOG: RRM domain
Length = 423
Score = 54.3 bits (129), Expect = 2e-07
Identities = 41/173 (23%), Positives = 78/173 (44%), Gaps = 19/173 (10%)
Query: 3 EYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++FGK GE+ + I+ R G RG G V + +S+ VD I+D + G+ + +++
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD--NHIIIGKQVEIKRTI 117
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P + S ++FV +P SV+ E K+ F G++ ++
Sbjct: 118 PRGSMSSNDFKTK--------------KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMR 163
Query: 121 DRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAAT 172
D G+SRGFG V +++ + + E G +++K+ + + T
Sbjct: 164 DHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTT 216
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 53.5 bits (127), Expect = 3e-07
Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 44/286 (15%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
F +IG V + +I G + VEF++ A++ + L R + V P
Sbjct: 66 FNQIGSVTKTKVIFD-GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQ 124
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD- 123
+ S+ F VFV L V+ Q+L++ F+P GDV A V+ D +
Sbjct: 125 QQSKIDTTRH------------FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNT 172
Query: 124 GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPR 183
KS+G+G V +E+ AI G ++ GR RT T T P
Sbjct: 173 TKSKGYGFVSYPKREEAERAIEQMNG-QWLGR------------RTIRTNWATRKPGD-- 217
Query: 184 NEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDL---YDLFGSVAPVIITK 240
E P+ K D + T GD N+ ++ N+ +S TE ++ + FG + V I K
Sbjct: 218 QEKPSHYNEK--SYDEIYNQTSGD-NTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFK 273
Query: 241 LLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ +G+ ++ +F+ + A I +++ G ++ ++ +
Sbjct: 274 M----QGY----AFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK 311
Score = 33.9 bits (76), Expect = 0.28
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 188 ATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEG 247
A + K + + + G D ++ N+ S+ TE + LF + V TK++ +G
Sbjct: 24 ARMHSKLAEREGFHLGNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF--DG 81
Query: 248 HFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYA 285
++ +F A + ++K D E+KV +A
Sbjct: 82 SNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ +S K+ + ++++ LP S++ QEL++M KP G
Sbjct: 74 FVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ 133
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
V+ ++ D G SRG G M + E+ I H+ G
Sbjct: 134 VISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 170
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ +S K+ + ++++ LP S++ QEL++M KP G
Sbjct: 74 FVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ 133
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
V+ ++ D G SRG G M + E+ I H+ G
Sbjct: 134 VISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 170
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ +S K+ + ++++ LP S++ QEL++M KP G
Sbjct: 107 FVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ 166
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
V+ ++ D G SRG G M + E+ I H+ G
Sbjct: 167 VISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 203
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ +S K+ + ++++ LP S++ QEL++M KP G
Sbjct: 107 FVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ 166
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
V+ ++ D G SRG G M + E+ I H+ G
Sbjct: 167 VISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 203
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ +S K+ + ++++ LP S++ QEL++M KP G
Sbjct: 107 FVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ 166
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
V+ ++ D G SRG G M + E+ I H+ G
Sbjct: 167 VISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 203
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 52.8 bits (125), Expect = 6e-07
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+ + FG+ G V I+ + RG G V + + A++ + + + GR + V
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF 191
Query: 59 DNPPPA---EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLH 115
P E+ RT H +V+ L +++ Q LKD F VL
Sbjct: 192 PEVPRGGENEVMRTKIRDNNRSYVDSPH----KVYAGNLGWNLTSQGLKDAFGDQPGVLG 247
Query: 116 ADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVL 157
A V+ +R+ G+SRGFG + + E A+ G E +GR L
Sbjct: 248 AKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Score = 51.6 bits (122), Expect = 1e-06
Identities = 44/207 (21%), Positives = 85/207 (40%), Gaps = 23/207 (11%)
Query: 81 RAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQ 139
+A E ++V LP+++ EL +F G V+ +V D+ +SRGFG V M + E+
Sbjct: 110 QASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEE 169
Query: 140 QNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDP 199
+A++ + ++ GR + V P PR ++ K D +
Sbjct: 170 AKEAMQMFNSSQIGGRTVKVN-----------------FPEVPRGGENEVMRTKIRDNNR 212
Query: 200 LAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFE 258
+ D ++ N+ + T L D FG V+ K++ +R + FE
Sbjct: 213 SYV----DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFE 268
Query: 259 TPEDADICISKLDKYSYGDHELKVTYA 285
+ E+ ++ ++ L++ A
Sbjct: 269 SAENVQSALATMNGVEVEGRALRLNLA 295
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 52.4 bits (124), Expect = 7e-07
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 1 MKEYFGKIGEVRRADIITSRGHH--RGMGTVEFNNSTDVDTAIRDC---DGAFLNGRAIF 55
++E F ++G V++ ++T +G RG G V F+ DV A+++ +G +N
Sbjct: 20 LEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAK 79
Query: 56 VRQDNPPPA----EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCG 111
+ N E S K A D+ + + L F + +LK +F G
Sbjct: 80 KKLRNKTKEKGKNENSECPKKEPKAKKAKVA-DKKARLIIRNLSFKCSEDDLKTVFAQFG 138
Query: 112 DVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
VL ++ DGK RGFG V + A++ E KGR + V
Sbjct: 139 AVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAV 186
Score = 48.5 bits (114), Expect = 1e-05
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKS-RGFGTVYMATKEQQNDAI 144
G +FV +LP S ++L+++F G V VVT++ K+ RGFG V + E A+
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITT 204
+ T ++G ++V K P+ EP A K K
Sbjct: 63 KEI--TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAK-KAKV---------- 109
Query: 205 GGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFE 258
D+ + + N+ +E DL +F V+ + P+G + QF+
Sbjct: 110 -ADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFK 162
>CE24139 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 235
Score = 52.4 bits (124), Expect = 7e-07
Identities = 52/202 (25%), Positives = 79/202 (38%), Gaps = 28/202 (13%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAI---FVR 57
+++ F K G ++ DI + RG VEF + D + A+R DG +GR I F R
Sbjct: 25 VEDIFHKYGRIKYVDIKSGRGP--AFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Query: 58 QDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHAD 117
P ++ + +E V V ++LKD + GDV +AD
Sbjct: 83 GVGPRGPAVAHSKTEVITAVETS---EEDVVVVV---------EDLKDHMRDAGDVCYAD 130
Query: 118 VVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGR-----VLDVKEGKGTSTRTAAT 172
V D G G V E A+R T+++ + V+E + +
Sbjct: 131 VARD------GTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVREDNSSGGGSGGG 184
Query: 173 GADTYIPRQPRNEPPATLKPKP 194
G D R PR E A+ K P
Sbjct: 185 GRDRSRSRSPRAERRASPKYSP 206
Score = 42.4 bits (98), Expect = 8e-04
Identities = 26/91 (28%), Positives = 42/91 (45%), Gaps = 3/91 (3%)
Query: 81 RAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQ 140
R E +V+V LP V +E++D+F G + + D+ + G+ F V
Sbjct: 3 RGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDA 59
Query: 141 NDAIRHWTGTEYKGRVLDVKEGKGTSTRTAA 171
DA+R G E+ GR + V+ +G R A
Sbjct: 60 EDAVRARDGYEFDGRRIRVEFTRGVGPRGPA 90
Score = 33.5 bits (75), Expect = 0.36
Identities = 17/82 (20%), Positives = 35/82 (41%), Gaps = 3/82 (3%)
Query: 205 GGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
GG + ++ N+P E ++ D+F + K + G ++ +FE DA+
Sbjct: 4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRI---KYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 265 ICISKLDKYSYGDHELKVTYAR 286
+ D Y + ++V + R
Sbjct: 61 DAVRARDGYEFDGRRIRVEFTR 82
>CE08369 [A] KOG4212 RNA-binding protein hnRNP-M
Length = 454
Score = 52.4 bits (124), Expect = 7e-07
Identities = 52/220 (23%), Positives = 87/220 (38%), Gaps = 22/220 (10%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCG-DVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
VF+ + + W +LK + + G +V +++ DR+GK +G V T+E + +
Sbjct: 47 VFITNIAYEARWVDLKSLVREKGGEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENL 106
Query: 148 TGTEYKGRVLDVKEGKGTS----TRTAATGADTYIPRQ------PRNEPPATL----KPK 193
++KGR + KE + + T TG D Y+ R R PP L +
Sbjct: 107 QKFDWKGRTIIAKEIRDPNAFFRTIKTETGID-YLSRTGGGGAGGRGPPPKDLDRPTRTG 165
Query: 194 PLDIDPLAITTGGDRN------SVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEG 247
D+ L + N IF N+ + LY++FG + ++ EG
Sbjct: 166 TYDLFGLNMEFLRQHNIEPPLCERIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEG 225
Query: 248 HFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYARF 287
Q+ P +A +S L+ D L V RF
Sbjct: 226 KSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNLVVKMDRF 265
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 52.4 bits (124), Expect = 7e-07
Identities = 28/76 (36%), Positives = 46/76 (59%), Gaps = 1/76 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++FV L F+V+ +L +F+ G+V +V+ D+ G+SRGFG V M+T + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 147 WTGTEYKGRVLDVKEG 162
+ G E++GR L V G
Sbjct: 160 FNGYEFEGRPLRVNAG 175
Score = 49.3 bits (116), Expect = 6e-06
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAI 144
G ++V L + V+ L+++F G V+ A V+ DRD G+S+GFG V +++ ++ AI
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTR 168
G + GR + V E + R
Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPR 339
Score = 35.8 bits (81), Expect = 0.073
Identities = 22/65 (33%), Positives = 34/65 (51%), Gaps = 2/65 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ F + G+V A +I R G +G G V ++S +V AI +GA L+GR I V +
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 59 DNPPP 63
P
Sbjct: 333 AEARP 337
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+ + F G V ++I + G RG G V + + +V+ A + +G GR + V
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174
Query: 59 DNPPP 63
PPP
Sbjct: 175 GPPPP 179
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/101 (28%), Positives = 51/101 (49%), Gaps = 2/101 (1%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ ++ K+ + ++++ LP S++ QEL++M KP G
Sbjct: 97 FVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGH 156
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYK 153
V+ ++ D +G SRG G M + E+ I+H+ G K
Sbjct: 157 VISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLK 197
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 52.0 bits (123), Expect = 1e-06
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 9/166 (5%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
F G + ++ +G V F++ + AI +G LN R ++V + P
Sbjct: 126 FSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG 124
+ VFV + ++ ++LK++F G V+ D G
Sbjct: 186 RAAEVRTRDRATFT---------NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASG 236
Query: 125 KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTA 170
KS+GFG V T E A+ G G+VL V + R A
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 33.1 bits (74), Expect = 0.47
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+KE F G + RA ++ G +G G V F++ + A+ + +G + + + V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 52.0 bits (123), Expect = 1e-06
Identities = 43/166 (25%), Positives = 70/166 (41%), Gaps = 7/166 (4%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRD---CDGAFLNGRAIF 55
++EYFGK G++ A I+ R G RG G + F + + + I D DG + +
Sbjct: 24 LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAV 83
Query: 56 VRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLH 115
R D + ++FV LP S+ E K+ F G +
Sbjct: 84 PRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIAD 143
Query: 116 ADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
V+ D + + RGFG + E+ D + H T E G++++VK
Sbjct: 144 VVVMYDHNTQRPRGFGFITF-DSEESVDMVLHKTFHELNGKMVEVK 188
Score = 46.2 bits (108), Expect = 5e-05
Identities = 43/188 (22%), Positives = 78/188 (40%), Gaps = 27/188 (14%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
++F+ + + + + L++ F GD++ A ++ DR G++RGFG + A I
Sbjct: 9 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 68
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGG 206
+ GR ++ K+ +PR + P L GG
Sbjct: 69 KHIID--GRTVEAKKA---------------VPRDDQQVLKRHASPMHLISPSHGGNGGG 111
Query: 207 DRNSVIFCENMPSSTTESDL---YDLFGSVAPVII--TKLLLNPEGHFTRNSYCQFETPE 261
R IF +PSS TE++ +D FG++A V++ P G + F++ E
Sbjct: 112 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGF----GFITFDSEE 167
Query: 262 DADICISK 269
D+ + K
Sbjct: 168 SVDMVLHK 175
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 52.0 bits (123), Expect = 1e-06
Identities = 37/162 (22%), Positives = 72/162 (43%), Gaps = 9/162 (5%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++E+F +G+VR +IT R G+ +EF++ V A+ G L G I V+
Sbjct: 253 LEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL-GLSGQRLLGVPIMVQH 311
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
+ + ++H ++V L F++ L+ +F+P G + +
Sbjct: 312 -----TQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQL 366
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
+ D + G+S+G+G + + A+ G E GR++ V
Sbjct: 367 IMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKV 408
>HsM5032089 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 494
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/174 (23%), Positives = 67/174 (37%), Gaps = 16/174 (9%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++ +F G++ D+ G G VEF++ D D A+ + +G L G + V
Sbjct: 18 VERFFKGYGKILEVDL------KNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEG------FEVFVAQLPFSVNWQELKDMFKPCGDVL 114
P + S G + + V L +WQ+LKD + G+V
Sbjct: 72 GPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVT 131
Query: 115 HADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
+AD R + G + + A+ GTE GR + + E K S R
Sbjct: 132 YADAHKGRKNE----GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRR 181
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 51.6 bits (122), Expect = 1e-06
Identities = 45/181 (24%), Positives = 83/181 (44%), Gaps = 13/181 (7%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++E+F +G+VR +I+ R R G+ VEF + + V AI G + G I V+
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQA 227
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
AE +R ++ ++V L F++ L+ +F+P G + +
Sbjct: 228 SQ---AEKNRAAAMANNL---QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQL 281
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTY 177
+ D + G+S+G+G + + E A+ G E GR + V + RT A+ A ++
Sbjct: 282 MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH---VTERTDASSASSF 338
Query: 178 I 178
+
Sbjct: 339 L 339
>Hs21361282 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 494
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/174 (23%), Positives = 67/174 (37%), Gaps = 16/174 (9%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++ +F G++ D+ G G VEF++ D D A+ + +G L G + V
Sbjct: 18 VERFFKGYGKILEVDL------KNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEG------FEVFVAQLPFSVNWQELKDMFKPCGDVL 114
P + S G + + V L +WQ+LKD + G+V
Sbjct: 72 GPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVT 131
Query: 115 HADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
+AD R + G + + A+ GTE GR + + E K S R
Sbjct: 132 YADAHKGRKNE----GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRR 181
>Hs20127499 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 344
Score = 51.6 bits (122), Expect = 1e-06
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 23/187 (12%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV---- 56
++ +F G + D+ G G VEF +S D D A+ + +G L G + V
Sbjct: 18 IQRFFSGYGRLLEVDL------KNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHAR 71
Query: 57 --RQDNPPPAEISRTXXXXXXXXXXKRAHDEG------FEVFVAQLPFSVNWQELKDMFK 108
R+D + SR+ G + + V L +WQ+LKD +
Sbjct: 72 GPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMR 131
Query: 109 PCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGK-GTST 167
G+V +AD +R + G + + A+ GTE GR + + E K TS
Sbjct: 132 QAGEVTYADAHKERTNE----GVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSH 187
Query: 168 RTAATGA 174
R + +G+
Sbjct: 188 RRSYSGS 194
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 51.6 bits (122), Expect = 1e-06
Identities = 56/259 (21%), Positives = 96/259 (36%), Gaps = 36/259 (13%)
Query: 29 VEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFE 88
VEF D A+ +G + G+ + V P ++ K+ F
Sbjct: 14 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--------------KKDTSNHFH 59
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAIRHW 147
VFV L + +++K F P G + A VV D GKS+G+G V K +AI H
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
G GR ++ T A +Q R E +
Sbjct: 120 GGQWLGGR--QIRTNWATRKPPAPKSTQENNTKQLRFED--------------VVNQSSP 163
Query: 208 RNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICI 267
+N ++C + S T+ + F ++ ++ + PE + S+ +F T E A I
Sbjct: 164 KNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EIRVFPEKGY---SFVRFSTHESAAHAI 218
Query: 268 SKLDKYSYGDHELKVTYAR 286
++ + H +K + +
Sbjct: 219 VSVNGTTIEGHVVKCYWGK 237
Score = 45.4 bits (106), Expect = 9e-05
Identities = 40/169 (23%), Positives = 65/169 (37%), Gaps = 10/169 (5%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAI----FVRQDN 60
FGKI + R + + G +G G V F N D + AI G +L GR I R+
Sbjct: 81 FGKISDARVVKDMAT-GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 139
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P + ++ + V+ + + Q ++ F P G ++ V
Sbjct: 140 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 199
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRT 169
+ +G+ V +T E AI GT +G V+ GK + T
Sbjct: 200 E-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 243
>At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 497
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/290 (18%), Positives = 113/290 (38%), Gaps = 49/290 (16%)
Query: 1 MKEYFGKIGEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K +F + +V ++ + G H G G VEF ++ + A+ + +G +L+ I + +
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKG 233
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ P +FVA L S+ ++ + FK G+V+H ++
Sbjct: 234 HESPGFAEEAAITKT--------------LFVANLRDSIQISDIINFFKDVGEVVHVRLI 279
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGT-STRTAATGADTYI 178
+ GK G+G V A+ + A+ VK G+ + + + GA T
Sbjct: 280 VNSQGKHAGWGFVEFASANEAEKAL--------------VKNGEYLHNYKISLDGAKTAP 325
Query: 179 PRQPR-------------NEPPATLKP----KPLDIDPLAITTGGDRNSVIFCENMPSS- 220
R P+ +K + LD P + R + +F N+P +
Sbjct: 326 HRPPKFCLDHKVWYEDYLRRESLLIKEVEGVEGLDETPDFLEEVAARKNTVFVANLPYNC 385
Query: 221 -TTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISK 269
+ + F V ++ +++++ G + +F + +A+ + K
Sbjct: 386 RLIVPTIINFFSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQK 435
>SPAC16.02c [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 365
Score = 51.2 bits (121), Expect = 2e-06
Identities = 40/162 (24%), Positives = 65/162 (39%), Gaps = 14/162 (8%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
M ++F G++ ++ G G VE ++ D + D G G I V
Sbjct: 20 MMDFFKGYGQILDCKLMN------GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE--- 70
Query: 61 PPPAEISRTXXXXXXXXXX-KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
P E R R GF + V L V+WQ+LKD+ + G+
Sbjct: 71 PARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGE----PTF 126
Query: 120 TDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKE 161
TD ++ G G V +T+E +A+ G KG+ + ++E
Sbjct: 127 TDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRE 168
Score = 33.9 bits (76), Expect = 0.28
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+FV ++P +++ D FK G +L ++ GFG V + D + +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIVNDFQ 58
Query: 149 GTEYKGRVLDVKEGKGTSTR 168
G E+ G + V+ +G R
Sbjct: 59 GKEFMGSRIVVEPARGERRR 78
Score = 33.1 bits (74), Expect = 0.47
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD- 59
+K+ K GE D + + G G VEF+ D+ A+ +G + G+A+ +R+D
Sbjct: 114 LKDVMRKAGEPTFTD---AHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLREDP 170
Query: 60 ---NPPPAEI 66
N P E+
Sbjct: 171 DAANEPLPEV 180
>Hs4506449 [R] KOG4733 FOG: RRM domain
Length = 407
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/101 (28%), Positives = 48/101 (46%), Gaps = 2/101 (1%)
Query: 55 FVRQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
FV D+P A+ ++ K+ + ++++ LP S++ QEL+ M KP G
Sbjct: 101 FVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQ 160
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYK 153
V+ ++ D G SRG G M + E+ I H+ G K
Sbjct: 161 VISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIK 201
>7299190 [A] KOG4212 RNA-binding protein hnRNP-M
Length = 632
Score = 51.2 bits (121), Expect = 2e-06
Identities = 26/77 (33%), Positives = 39/77 (49%), Gaps = 1/77 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPC-GDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
V+++ +P+ WQ+LKD+F+ G + + + D GK+RG G V E A+
Sbjct: 59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKM 118
Query: 148 TGTEYKGRVLDVKEGKG 164
E GR L VKE G
Sbjct: 119 NRYEVNGRELVVKEDHG 135
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTV 132
+VFVA L + V+ ++LK +FK G V D+ D++G SRGF +
Sbjct: 233 KVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVI 277
Score = 33.5 bits (75), Expect = 0.36
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 208 RNSVIFCENMPSSTTESDLYDLFGS-VAPVIITKLLLNPEGHFTRNSYCQFETPEDADIC 266
RN ++ N+P DL DLF V + +L + G +F+ PE+
Sbjct: 55 RNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKA 114
Query: 267 ISKLDKYSYGDHELKV 282
+ K+++Y EL V
Sbjct: 115 LEKMNRYEVNGRELVV 130
Score = 32.0 bits (71), Expect = 1.0
Identities = 18/71 (25%), Positives = 30/71 (41%), Gaps = 6/71 (8%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ + +P + WQ L+D F+ GDV A++ + G V + AI
Sbjct: 565 IIIKNVPITCTWQTLRDKFREIGDVKFAEI------RGNDVGVVRFFKERDAELAIALMD 618
Query: 149 GTEYKGRVLDV 159
G+ GR + V
Sbjct: 619 GSRLDGRNIKV 629
Score = 31.6 bits (70), Expect = 1.4
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 1 MKEYFGKIGEVRRADI-ITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+ F G+V+ D+ + G+ RG +E+++ + AI D L R + VR D
Sbjct: 248 LKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLD 307
Query: 60 NPP 62
P
Sbjct: 308 RIP 310
Score = 31.2 bits (69), Expect = 1.8
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+++ F +IG+V+ A+I RG+ +G V F D + AI DG+ L+GR I V
Sbjct: 579 LRDKFREIGDVKFAEI---RGND--VGVVRFFKERDAELAIALMDGSRLDGRNIKV 629
Score = 30.8 bits (68), Expect = 2.3
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 1 MKEYFGKI-GEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K+ F +I G + + G RG G VEF + +V A+ + +NGR + V++
Sbjct: 73 LKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKE 132
Query: 59 DN 60
D+
Sbjct: 133 DH 134
Score = 28.9 bits (63), Expect = 8.9
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 201 AITTGGDRNS-VIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFET 259
A G R S I +N+P + T L D F + V ++ N G +F
Sbjct: 553 ANAVGASRKSDTIIIKNVPITCTWQTLRDKFREIGDVKFAEIRGNDVG------VVRFFK 606
Query: 260 PEDADICISKLDKYSYGDHELKVTY 284
DA++ I+ +D +KVTY
Sbjct: 607 ERDAELAIALMDGSRLDGRNIKVTY 631
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 50.8 bits (120), Expect = 2e-06
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++++F +G+VR II+ R R G+ VEF V AI G L G I V+
Sbjct: 148 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 206
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
AE +R ++ + ++V L F++ L+ +F+P G + + +
Sbjct: 207 SQ---AEKNR---LAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVL 260
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTY 177
+ D D G+S+G+G + + E A+ G E GR + V G T G D
Sbjct: 261 MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV----GHVTERLDGGTDIT 316
Query: 178 IP 179
P
Sbjct: 317 FP 318
Score = 29.3 bits (64), Expect = 6.8
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 2/84 (2%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR-HW 147
VF QL + ++L+D F G V +++DR+ + R G Y+ E Q+ +
Sbjct: 134 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-RSKGIAYVEFCEIQSVPLAIGL 192
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAA 171
TG G + V+ + R AA
Sbjct: 193 TGQRLLGVPIIVQASQAEKNRLAA 216
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 50.8 bits (120), Expect = 2e-06
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++++F +G+VR II+ R R G+ VEF V AI G L G I V+
Sbjct: 166 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 224
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
AE +R ++ + ++V L F++ L+ +F+P G + + +
Sbjct: 225 SQ---AEKNR---LAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVL 278
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTY 177
+ D D G+S+G+G + + E A+ G E GR + V G T G D
Sbjct: 279 MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV----GHVTERLDGGTDIT 334
Query: 178 IP 179
P
Sbjct: 335 FP 336
Score = 29.3 bits (64), Expect = 6.8
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 2/84 (2%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR-HW 147
VF QL + ++L+D F G V +++DR+ + R G Y+ E Q+ +
Sbjct: 152 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-RSKGIAYVEFCEIQSVPLAIGL 210
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAA 171
TG G + V+ + R AA
Sbjct: 211 TGQRLLGVPIIVQASQAEKNRLAA 234
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 50.8 bits (120), Expect = 2e-06
Identities = 27/83 (32%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQ 140
A EG +FV L V ++L+ F GD+L ++ +RD G+SRGFG + A +
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61
Query: 141 NDAIRHWTGTEYKGRVLDVKEGK 163
+++IR G ++ RV+ V +
Sbjct: 62 DESIREMHGRDFGDRVISVNRAE 84
Score = 31.2 bits (69), Expect = 1.8
Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ F + G++ I+ R G RG G + F + +D +IR+ G R I V +
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82
Query: 59 DNP 61
P
Sbjct: 83 AEP 85
>At1g01080 [R] KOG0118 FOG: RRM domain
Length = 293
Score = 50.8 bits (120), Expect = 2e-06
Identities = 38/143 (26%), Positives = 62/143 (42%), Gaps = 2/143 (1%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXK 80
G RG G V + AI DG + GR + VR R
Sbjct: 146 GESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKI 205
Query: 81 RAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQ 139
++ +V+V LP+ L++ F G ++ V+ DR G++R F + + E+
Sbjct: 206 LMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 265
Query: 140 QNDAIRHWTGTEYKGRVLDVKEG 162
+ DA + GT+Y+GR + V+EG
Sbjct: 266 R-DAALSFNGTQYEGRRIIVREG 287
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAIRH 146
E++V +P S + +L DMF+P G V+ +V + + G+SRG G V M + AI
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGG 206
GTE GR + V+ + P P+ L+ P I
Sbjct: 169 LDGTEVGGREMRVRYSVDMN-------------------PGTRRNPEVLNSTPKKILMYE 209
Query: 207 DRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADI 265
++ V + N+P T L + F ++ T++L + + G ++ F + E+ D
Sbjct: 210 SQHKV-YVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 266 CIS 268
+S
Sbjct: 269 ALS 271
>YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 887
Score = 50.4 bits (119), Expect = 3e-06
Identities = 53/216 (24%), Positives = 80/216 (36%), Gaps = 41/216 (18%)
Query: 82 AHDEGF------EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGK------SRGF 129
AHDE +F+ L FS Q L D FK + A V T D K S GF
Sbjct: 652 AHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGF 711
Query: 130 GTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPAT 189
G V TKEQ N I GT G + +K S R A+ +T
Sbjct: 712 GFVEFRTKEQANAVIAAMDGTVIDGHKIQLK----LSHRQASQSGNTK------------ 755
Query: 190 LKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHF 249
T ++ I +N+P T D+++LF S + ++ +
Sbjct: 756 -------------TKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSA 802
Query: 250 TRNSYCQFETPEDADICISKLDKYSYGDHELKVTYA 285
++ +F P++A+ + +L L + YA
Sbjct: 803 RGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYA 838
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD 84
G G VEF + I DG ++G I ++ + ++ T +++
Sbjct: 710 GFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKT---------KSNK 760
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
+ ++ V LPF +++ ++F G + V D +RGF V ++ +A+
Sbjct: 761 KSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAM 820
Query: 145 RHWTGTEYKGRVL 157
G GR L
Sbjct: 821 DQLHGVHLLGRRL 833
Score = 32.7 bits (73), Expect = 0.61
Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 30/216 (13%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ V PF +EL +MF P G + + GT+ + A +T
Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKLERLLMPP--------AGTIAIVQFRDTTSARAAFT 585
Query: 149 GTEYK----GRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDI-DPLAIT 203
YK G + + K T+ A E P +KP D+ +
Sbjct: 586 KLSYKRFKDGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDV 645
Query: 204 TGGDRNS-----------VIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN 252
T G N+ IF +N+ STT +L D F ++ ++ P+
Sbjct: 646 TEGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGK 705
Query: 253 S------YCQFETPEDADICISKLDKYSYGDHELKV 282
+ + +F T E A+ I+ +D H++++
Sbjct: 706 TLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQL 741
Score = 30.8 bits (68), Expect = 2.3
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAIRHW 147
+F+ + ++ ++ + +F P G++ V D R G+S+GF V + +A
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406
Query: 148 TGTEYKGRVLDVKEGK 163
++GR+L + G+
Sbjct: 407 DKQIFQGRLLHILPGE 422
Score = 29.6 bits (65), Expect = 5.2
Identities = 18/74 (24%), Positives = 35/74 (46%), Gaps = 8/74 (10%)
Query: 118 VVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTY 177
++ DR+G+SR FG + +E DA+ ++ G+ ++V K + AD
Sbjct: 48 ILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK--------SFADPR 99
Query: 178 IPRQPRNEPPATLK 191
+P+ + + LK
Sbjct: 100 VPQPMKEKRREALK 113
>Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 963
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR----Q 58
E G++ ++R I ++RG RG VEF A+ + D + GR +FV +
Sbjct: 727 EACGEVVQIR--PIFSNRGDFRGYCYVEFKEEKSALQAL-EMDRKSVEGRPMFVSPCVDK 783
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
P ++ R E ++F++ LPFS +EL+++ K G V +
Sbjct: 784 SKNPDFKVFRYSTSL-----------EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL 832
Query: 119 VTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
VT+R GK +G V + Q + A+ G K ++ V
Sbjct: 833 VTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 873
Score = 43.5 bits (101), Expect = 3e-04
Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 80 KRAHD---EGFEVFVAQLPFSVNWQE--LKDMFKPCGDVLHADVVTDRDGKSRGFGTVYM 134
K HD + VFV+ LP+S+ + L+ +F+ CG+V+ + G RG+ Y+
Sbjct: 694 KVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGY--CYV 751
Query: 135 ATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKP 194
KE+++ + +D K +G +P P K K
Sbjct: 752 EFKEEKS---------ALQALEMDRKSVEG----------------RPMFVSPCVDKSKN 786
Query: 195 LDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSY 254
D +T +++ +F +P S T+ +L ++ + V +L+ N G +Y
Sbjct: 787 PDFKVFRYSTSLEKHK-LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 845
Query: 255 CQFETPEDADICISKLDKYSYGDHELKV 282
++E A + K+D + ++ +KV
Sbjct: 846 VEYENESQASQAVMKMDGMTIKENIIKV 873
Score = 33.1 bits (74), Expect = 0.47
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Query: 9 GEVRRADIITSR-GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEI 66
G V+ ++T+R G +G+ VE+ N + A+ DG + I V NPP ++
Sbjct: 825 GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKV 883
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 50.4 bits (119), Expect = 3e-06
Identities = 58/285 (20%), Positives = 106/285 (36%), Gaps = 36/285 (12%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
+ F +IG + +I + VEF+ A+ +G + G+ + V P
Sbjct: 25 QLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTP 84
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD- 121
++ K+ F VFV L + +++K F P G + A VV D
Sbjct: 85 SSQ--------------KKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDM 130
Query: 122 RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQ 181
GKS+G+G V K +AI+ G GR + T T P
Sbjct: 131 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI-------------RTNWATRKPPA 177
Query: 182 PRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKL 241
P++ + K D + N ++C + S TE + F ++ ++
Sbjct: 178 PKSTYESNTKQLSYD---EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM--EI 232
Query: 242 LLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ P+ + S+ +F + E A I ++ + H +K + +
Sbjct: 233 RVFPDKGY---SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 45.4 bits (106), Expect = 9e-05
Identities = 39/165 (23%), Positives = 63/165 (37%), Gaps = 10/165 (6%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAI----FVRQDN 60
FG+I + R + + G +G G V F N D + AI+ G +L GR I R+
Sbjct: 118 FGRISDARVVKDMAT-GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P + ++ V+ + + Q ++ F P G ++ V
Sbjct: 177 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 236
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGT 165
D +G+ V + E AI GT +G V+ GK T
Sbjct: 237 D-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKET 276
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/174 (24%), Positives = 68/174 (38%), Gaps = 3/174 (1%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXK 80
G RG G V F N + A+ G L + +FV + E
Sbjct: 239 GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKD-ERREMLKQKFSDNFIA 297
Query: 81 RAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQ 140
+ + ++V L S+N L+++F G ++ A V+ +G+S+GFG V + E+
Sbjct: 298 KPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEES 357
Query: 141 NDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKP 194
A R+ G G+ + V+ + R Y QPR A P P
Sbjct: 358 KQAKRYLNGFLVDGKPIVVRVAERKEDRIKR--LQQYFQAQPRQYTQAPSAPSP 409
Score = 49.7 bits (117), Expect = 5e-06
Identities = 54/263 (20%), Positives = 95/263 (35%), Gaps = 33/263 (12%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++ F G + ++ G +G G V+F+ +A G+ + G+ +FV +
Sbjct: 128 LERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK-- 185
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ + V+V L +V L +F G V V+
Sbjct: 186 ----------FINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMR 235
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
D G+SRGFG V E A+ G + + L V GK
Sbjct: 236 DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV--GKALK-------------- 279
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITK 240
++E LK K D I R S ++ +N+ S E+ L ++FG ++ K
Sbjct: 280 --KDERREMLKQKFSD---NFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAK 334
Query: 241 LLLNPEGHFTRNSYCQFETPEDA 263
++ + G + F E++
Sbjct: 335 VMCHENGRSKGFGFVCFSNCEES 357
>At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 50.4 bits (119), Expect = 3e-06
Identities = 41/166 (24%), Positives = 74/166 (43%), Gaps = 10/166 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRD---CDGAFLNGRAIF 55
++EYF GEV + ++ + G RG G V F++ +D ++D D ++ +
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAM 81
Query: 56 VRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLH 115
R++ P R+ A+ ++FV LP ++ E + F+ G V
Sbjct: 82 SREEQSP---AGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSD 138
Query: 116 ADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
A ++ D+ + RGFG V E D + H T + G+ ++VK
Sbjct: 139 AVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLHKTFHDLNGKQVEVK 183
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 50.1 bits (118), Expect = 4e-06
Identities = 54/204 (26%), Positives = 94/204 (45%), Gaps = 31/204 (15%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIR 145
F VFV L V+ Q+L++ F+P GDV A V+ D + KS+G+G V +E+ AI
Sbjct: 103 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 162
Query: 146 HWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTG 205
G ++ GR RT T T P E P+ K D + T
Sbjct: 163 QMNG-QWLGR------------RTIRTNWATRKPGD--QEKPSHYNEK--SYDEIYNQTS 205
Query: 206 GDRNSVIFCENMPSSTTESDL---YDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPED 262
GD N+ ++ N+ +S TE ++ + FG + V I K+ +G+ ++ +F+ +
Sbjct: 206 GD-NTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKM----QGY----AFVKFDNKDA 255
Query: 263 ADICISKLDKYSYGDHELKVTYAR 286
A I +++ G ++ ++ +
Sbjct: 256 AAKAIVQMNNQDVGGQLVRCSWGK 279
>YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 685
Score = 49.7 bits (117), Expect = 5e-06
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 81 RAHDEGFEV---FVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATK 137
+ +D+G ++ FV +P V ++L D F + HA VV D + +SRGFG V A +
Sbjct: 17 KQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVE 76
Query: 138 EQQNDAIRHWTGTEYKGRVL--DVKEGKGTSTRTA 170
+ +A+ T++ G +L D+ + + S +T+
Sbjct: 77 DDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTS 111
Score = 32.3 bits (72), Expect = 0.80
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLD 271
+F ++P T+ L D F + AP+ ++ + + F +D ++K
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR 87
Query: 272 KYSYGDHELKVTYAR 286
K + H L+V A+
Sbjct: 88 KTKFNGHILRVDIAK 102
Score = 31.6 bits (70), Expect = 1.4
Identities = 23/66 (34%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGF--GTVYMATKEQ--Q 140
E F VFV +P+ + L F G V +A V D KS G GT ++A K+Q
Sbjct: 288 EDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVID---KSTGLAKGTAFVAFKDQYTY 344
Query: 141 NDAIRH 146
N+ I++
Sbjct: 345 NECIKN 350
Score = 28.9 bits (63), Expect = 8.9
Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 20/179 (11%)
Query: 1 MKEYFGKIGEVRRADIITSRGHH-RGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV--- 56
+ ++F ++ A ++ RG G V F D A+ NG + V
Sbjct: 42 LADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIA 101
Query: 57 -RQDNPPPAE--ISRTXXXXXXXXXXKRAHDEGF------------EVFVAQLPFSVNWQ 101
R+D + ++ + DE ++ + +P+S
Sbjct: 102 KRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDP 161
Query: 102 -ELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
+LK +F G V+ A + RDGK GF V M A+ + + GR + V
Sbjct: 162 VKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAV 220
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/73 (36%), Positives = 41/73 (55%), Gaps = 1/73 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
++FV L + + LK F G+V A V+ DR+ G+SRGFG V + ++ N+AI+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 147 WTGTEYKGRVLDV 159
G E GR + V
Sbjct: 96 MDGKELNGRQIRV 108
Score = 42.7 bits (99), Expect = 6e-04
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+K+ F GEV A +I R G RG G V F+ + AI++ DG LNGR I V
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 49.3 bits (116), Expect = 6e-06
Identities = 30/91 (32%), Positives = 46/91 (49%), Gaps = 5/91 (5%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
VFV +P+ ++LKD+F G V+ +V DR+ GK +G+G +E A+R+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 148 TGTEYKGRVLDV----KEGKGTSTRTAATGA 174
G E+ GR L V E ++ TGA
Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGA 108
Score = 37.0 bits (84), Expect = 0.033
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADICISKL 270
+F N+P TE L D+F V PV+ +L+ + E G +C+++ E A + L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 271 DKYSYGDHELKVTYA 285
+ + L+V A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 29.3 bits (64), Expect = 6.8
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K+ F ++G V ++ R G +G G E+ + +A+R+ +G +GRA+ R
Sbjct: 32 LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL--RV 89
Query: 59 DN 60
DN
Sbjct: 90 DN 91
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 49.3 bits (116), Expect = 6e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
VFV +P+ ++LKD+F G V+ +V DR+ GK +G+G +E A+R+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 148 TGTEYKGRVLDV 159
G E+ GR L V
Sbjct: 78 NGREFSGRALRV 89
Score = 33.9 bits (76), Expect = 0.28
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADICISKL 270
+F N+P TE L D+F V V+ +L+ + E G +C+++ E A + L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 271 DKYSYGDHELKVTYA 285
+ + L+V A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 29.6 bits (65), Expect = 5.2
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K+ F ++G V ++ R G +G G E+ + +A+R+ +G +GRA+ R
Sbjct: 32 LKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL--RV 89
Query: 59 DN 60
DN
Sbjct: 90 DN 91
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 48.9 bits (115), Expect = 8e-06
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++F+ L F Q L + F CG V+ A +V DR +S+GFG V A+ ++ A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 147 WTGTEYKGRVLDVKEGK 163
+ G + GR + V K
Sbjct: 95 FNGQQLNGRTIFVDYAK 111
Score = 38.5 bits (88), Expect = 0.011
Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+ E F K G+V A I+ R R G G V F ++ + A+ + +G LNGR IFV
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFV 107
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 48.9 bits (115), Expect = 8e-06
Identities = 63/331 (19%), Positives = 124/331 (37%), Gaps = 65/331 (19%)
Query: 1 MKEYFGKIGEVRRADIIT---------------SRGHHRGMGTVEFNNSTDVDTAIRDCD 45
++ F +GE+ +I S+G G G V + D + A+ +
Sbjct: 161 IRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLN 220
Query: 46 GAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKD 105
G L + I V P I +G ++V+ LP ++ QEL+
Sbjct: 221 GLRLQNKTIKVSFARPSSDAI------------------KGANLYVSGLPKTMTQQELEA 262
Query: 106 MFKPCGDVLHADVVTD--RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKG----RVLDV 159
+F P G ++ + ++ + D +++G G + +E+ AI GT V+
Sbjct: 263 IFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKF 322
Query: 160 KEGKGTSTRTAATGADTYIPRQ-----------PRNEPPATLKPKPLDIDPLAITTGGDR 208
G++++ ++ Q P N+ A P D+ + + G
Sbjct: 323 SNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGA 382
Query: 209 NSV--------------IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-S 253
+ IF N+ T E+ L+ LFG V K++ +P + +
Sbjct: 383 AAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYG 442
Query: 254 YCQFETPEDADICISKLDKYSYGDHELKVTY 284
+ ++A + I L+ Y+ G+ L+V++
Sbjct: 443 FVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 473
Score = 32.3 bits (72), Expect = 0.80
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 217 MPSSTTESDLYDLFGSVAPVIITKLL----------LNPE----GHFTRNSYCQFETPED 262
+P + TE ++ LF SV + KL+ LNP+ G + + P+D
Sbjct: 152 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQD 211
Query: 263 ADICISKLDKYSYGDHELKVTYAR 286
A+ ++ L+ + +KV++AR
Sbjct: 212 AEQAVNVLNGLRLQNKTIKVSFAR 235
>YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 534
Score = 48.5 bits (114), Expect = 1e-05
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 24/166 (14%)
Query: 1 MKEYFGKIGEVRRADIIT--SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++EYFGK G V I+ + G RG G + F + VD ++ L+G+ I ++
Sbjct: 175 LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH--ILDGKVIDPKR 232
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
P + D+ ++FV + V +E ++ F G ++ A +
Sbjct: 233 AIP------------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL 274
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGK 163
+ D+D G+SRGFG V + + D + ++K R +++K +
Sbjct: 275 MLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAE 319
>Hs5902076 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 248
Score = 48.1 bits (113), Expect = 1e-05
Identities = 50/188 (26%), Positives = 73/188 (38%), Gaps = 25/188 (13%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+++ F K G +R D+ RG VEF + D + A+ DG +G + R +
Sbjct: 32 IEDVFYKYGAIRDIDLKNRRGGPP-FAFVEFEDPRDAEDAVYGRDGYDYDGYRL--RVEF 88
Query: 61 PPPAEISRTXXXXXXXXXXKR------AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVL 114
P + R + V V+ LP S +WQ+LKD + GDV
Sbjct: 89 PRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVC 148
Query: 115 HADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGA 174
+ADV D G G V KE A+R T+++ EG+ R G
Sbjct: 149 YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSH-----EGETAYIRVKVDG- 196
Query: 175 DTYIPRQP 182
PR P
Sbjct: 197 ----PRSP 200
Score = 37.7 bits (86), Expect = 0.019
Identities = 47/201 (23%), Positives = 71/201 (34%), Gaps = 30/201 (14%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
++V LP + ++++D+F G + D+ R G F V DA+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 75
Query: 149 GTEYKG---RVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTG 205
G +Y G RV + G+GT R G PR R PP+
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTG-RGGGGGGGGGAPR-GRYGPPSR---------------- 117
Query: 206 GDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADI 265
N V+ +P S + DL D V + + G +F ED
Sbjct: 118 RSENRVV-VSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTG------VVEFVRKEDMTY 170
Query: 266 CISKLDKYSYGDHELKVTYAR 286
+ KLD + HE + Y R
Sbjct: 171 AVRKLDNTKFRSHEGETAYIR 191
Score = 33.5 bits (75), Expect = 0.36
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 206 GDRNSVIFCENMPSSTTESDLYDLF---GSVAPVIITKLLLNPEGHFTRNSYCQFETPED 262
G+ + I+ N+P D+ D+F G++ + + P F +FE P D
Sbjct: 12 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV-----EFEDPRD 66
Query: 263 ADICISKLDKYSYGDHELKVTYAR 286
A+ + D Y Y + L+V + R
Sbjct: 67 AEDAVYGRDGYDYDGYRLRVEFPR 90
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/81 (32%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQND 142
D + FV L ++ + + L+ F GDV+ + ++ DR+ G+SRGFG V ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 143 AIRHWTGTEYKGRVLDVKEGK 163
AI G + GR + V E +
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
Score = 32.7 bits (73), Expect = 0.61
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 5 FGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
F + G+V + II R G RG G V F + + AI +G L+GR+I V +
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83
>At1g17640 [R] KOG0118 FOG: RRM domain
Length = 369
Score = 48.1 bits (113), Expect = 1e-05
Identities = 41/138 (29%), Positives = 65/138 (46%), Gaps = 16/138 (11%)
Query: 4 YFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNP 61
YFGK GEV + I+T R G+ RG G V F +S + + + ++ R +
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE--DHVIDDRKV------- 135
Query: 62 PPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD 121
++ RT K A + ++FV LP + ELK+ F GD++ ++ D
Sbjct: 136 ---DLKRTLPRGDKDTDIK-AVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYD 191
Query: 122 -RDGKSRGFGTVYMATKE 138
G+SRGFG V T++
Sbjct: 192 HHTGRSRGFGFVTFQTED 209
>Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 407
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 7/177 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ YF + GEV I+ + RG G V+F + V T + L+GR I +
Sbjct: 26 LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHT-LDGRNIDPKP 84
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
P + RT + + + ++FV +P + EL++ FK G V +
Sbjct: 85 CTPRGMQPERTRPKEGWQKGPRSDYSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM 144
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIR-HWTGTEYKGRVLDVKEGKGTSTRTAATG 173
+ D + + RGFG + ++ + A+ H+ + G+ ++VK + +++ A G
Sbjct: 145 IYDAEKQRPRGFGFITFEDEQSVDQAVNMHF--HDIMGKKVEVKRAEPRDSKSQAPG 199
Score = 31.2 bits (69), Expect = 1.8
Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 23/187 (12%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQND 142
DE ++FV L +S + L+ F G+V+ ++ D+ +SRGFG V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAI 202
+ T GR +D K P PR P +PK +
Sbjct: 67 VLASRPHT-LDGRNIDPK------------------PCTPRGMQPERTRPK--EGWQKGP 105
Query: 203 TTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPE 261
+ +++ IF +P + E++L + F V ++ + E R + FE +
Sbjct: 106 RSDYSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165
Query: 262 DADICIS 268
D ++
Sbjct: 166 SVDQAVN 172
>CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 872
Score = 47.8 bits (112), Expect = 2e-05
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 29 VEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHD---- 84
V FN DV A++ DG FL G I + + P E + +
Sbjct: 215 VTFNRPPDVRRALQK-DGQFLGGFKIGIEKIETPEPEHEVIEEHGASLESRDKEEETVRE 273
Query: 85 ---EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQ 140
E +F+ LP++ +L+ +FK G+V VV D + G +GF V E
Sbjct: 274 KILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAA 333
Query: 141 NDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLK 191
A G +KGR++ + G T+ ++ +P P N A K
Sbjct: 334 VAAYSALDGYVFKGRMMHILPGDEKRTKEGEEESEV-VPDDPDNPLKAEAK 383
Score = 38.5 bits (88), Expect = 0.011
Identities = 35/151 (23%), Positives = 68/151 (44%), Gaps = 17/151 (11%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR---QDNPPPAEISRTXXXXXXXXXXKR 81
G G V+F + D TA++D G L+G ++ ++ ++N + R ++
Sbjct: 690 GFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENADKGALKR-------KEVKQK 742
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDV--LHADVVTDRDGKSRGFGTVYMATKEQ 139
E ++ V LPF + +E++ +F+ G V + + + RGFG V + ++
Sbjct: 743 EQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADE 802
Query: 140 QN---DAIRHWTGTEYKGRVLDVKEGKGTST 167
+ D++ H T GR L ++ K T
Sbjct: 803 AHRAFDSLVH--STHLYGRRLVLEWAKDDET 831
Score = 33.9 bits (76), Expect = 0.28
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ V LP + Q+L+ F+ G + A + ++GK RGF V + ++A+
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Query: 149 GTEYKGRVLDVKE 161
T + + L V+E
Sbjct: 65 QTFFNSKKLTVEE 77
Score = 29.3 bits (64), Expect = 6.8
Identities = 15/62 (24%), Positives = 28/62 (44%), Gaps = 1/62 (1%)
Query: 1 MKEYFGKIGEVRRADI-ITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
++++F K G++ A + T G RG V F + A+ + F N + + V +
Sbjct: 19 LRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLTVEEC 78
Query: 60 NP 61
P
Sbjct: 79 RP 80
>7300132 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 255
Score = 47.8 bits (112), Expect = 2e-05
Identities = 50/195 (25%), Positives = 72/195 (36%), Gaps = 39/195 (20%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNG---RAIFVR 57
+++ F K G+V D+ RG VEF ++ D D A++ DG +G R F R
Sbjct: 23 IQDLFHKFGKVTFVDLKNRRGPP--FAFVEFEDARDADDAVKARDGYDYDGYRLRVEFPR 80
Query: 58 QDNPPPAEISRTXXXXXXXXXXKRAHDEG--------------FEVFVAQLPFSVNWQEL 103
P R+ D G + V V LP S +WQ+L
Sbjct: 81 GGGP---------GSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQDL 131
Query: 104 KDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGR-----VLD 158
KD + GDV AD D G G V E AI+ + ++ +
Sbjct: 132 KDHMREAGDVCFADTYKD------GSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIR 185
Query: 159 VKEGKGTSTRTAATG 173
V+E G + R G
Sbjct: 186 VREDSGDNDRGGGGG 200
Score = 37.0 bits (84), Expect = 0.033
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 206 GDRNSV-IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
G RN I+ N+P D+ DLF V L F ++ +FE DAD
Sbjct: 2 GSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPF---AFVEFEDARDAD 58
Query: 265 ICISKLDKYSYGDHELKVTYAR 286
+ D Y Y + L+V + R
Sbjct: 59 DAVKARDGYDYDGYRLRVEFPR 80
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 21/198 (10%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
++V LP + ++++D+F G V D+ ++ + F V +DA++
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDL---KNRRGPPFAFVEFEDARDADDAVKARD 65
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
G +Y G L V+ +G + G R P + +T
Sbjct: 66 GYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVT----- 120
Query: 209 NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
+P+S + DL D V + G +F ED I
Sbjct: 121 -------GLPASGSWQDLKDHMREAGDVCFADTYKDGSG------VVEFLRHEDMKYAIK 167
Query: 269 KLDKYSYGDHELKVTYAR 286
KLD + HE +V Y R
Sbjct: 168 KLDDSRFRSHEGEVAYIR 185
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 47.4 bits (111), Expect = 2e-05
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 35/193 (18%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQND 142
+E +FV +L +S++ + LK F+ G V+ A V+ +R +SRG+G V K
Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 224
Query: 143 AIRHWTGTEYKGRVL--DVKEGK--GTSTRTAATGADTYIPRQPRNEPPATLKPKPLDID 198
AI+ G E GR + D+ K G + R G DT P +P
Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFG-DT--PSEP---------------- 265
Query: 199 PLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQF 257
+ +F N+ + +++LF V+ ++ +PE + Y QF
Sbjct: 266 ----------SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF 315
Query: 258 ETPEDADICISKL 270
EDA + L
Sbjct: 316 SNMEDAKKALDAL 328
Score = 44.3 bits (103), Expect = 2e-04
Identities = 39/151 (25%), Positives = 65/151 (42%), Gaps = 16/151 (10%)
Query: 1 MKEYFGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K+ F IG V A +I RG RG G V+F N + + AI++ G ++GR I
Sbjct: 184 LKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDM 243
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFE----VFVAQLPFSVNWQELKDMFKPCGDVL 114
PA K+ D E +F+ L F+ + + ++F G+V+
Sbjct: 244 STSKPA---------GNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVV 294
Query: 115 HADVVTDRDGKS-RGFGTVYMATKEQQNDAI 144
+ T + + +GFG V + E A+
Sbjct: 295 SVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Query: 3 EYFGKIGEVRRADIIT--SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
E F K GEV I T +G G V+F+N D A+ G +++ R + + +
Sbjct: 285 ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344
Query: 61 PPP 63
P P
Sbjct: 345 PRP 347
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 47.4 bits (111), Expect = 2e-05
Identities = 48/211 (22%), Positives = 79/211 (36%), Gaps = 19/211 (9%)
Query: 1 MKEYFGKIGEVRRADII--TSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K F K GEV A +I +G G V F N + + AI +G ++ RA+
Sbjct: 43 LKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNW 102
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
+E +R +A + V+V + +L+D+F GD+ +
Sbjct: 103 AARKNSEENRDKLTFEQVFNSTKA--DNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRI 160
Query: 119 VTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYI 178
K++ + V KE AI G E G + G RT A + +
Sbjct: 161 F-----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWG-----RTQAVVINNQL 210
Query: 179 PRQPR-----NEPPATLKPKPLDIDPLAITT 204
+ +P L P P+D+ L + T
Sbjct: 211 SNALKITVFNLQPNQALNPLPIDLSSLMMPT 241
Score = 46.6 bits (109), Expect = 4e-05
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 34/206 (16%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDA 143
E F VFV L V+ + LK F G+V A V+ D + KS+G+G V K+ +A
Sbjct: 25 EHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENA 84
Query: 144 IRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAIT 203
I GK R T + R+ E L + + +
Sbjct: 85 IAG-------------MNGKWIGKRAVRT---NWAARKNSEE-----NRDKLTFEQVFNS 123
Query: 204 TGGDRNSVIFCENMPSSTTESDLYDLF---GSVAPVIITKLLLNPEGHFTRNSYCQFETP 260
T D N+ ++ N+ TT++DL DLF G +A V I K R ++ ++E
Sbjct: 124 TKAD-NTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT--------QRYAFVRYEKK 174
Query: 261 EDADICISKLDKYSYGDHELKVTYAR 286
E A I +++ ++++ ++ R
Sbjct: 175 ECATKAIMEMNGKEMAGNQVRCSWGR 200
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 47.4 bits (111), Expect = 2e-05
Identities = 27/72 (37%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
VFV +P+ ++LK++F G VL +V DR+ GK +GFG +E A+R+
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 148 TGTEYKGRVLDV 159
G E GR L V
Sbjct: 78 NGYEIGGRTLRV 89
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPEDADICISKL 270
+F N+P TE L ++F V PV+ KL+ + E + +C+++ E A + L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 271 DKYSYGDHELKVTYA 285
+ Y G L+V A
Sbjct: 78 NGYEIGGRTLRVDNA 92
Score = 30.4 bits (67), Expect = 3.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+KE F ++G V ++ R G +G G E+ + +A+R+ +G + GR + R
Sbjct: 32 LKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTL--RV 89
Query: 59 DN 60
DN
Sbjct: 90 DN 91
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/90 (35%), Positives = 45/90 (49%), Gaps = 3/90 (3%)
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQ 140
A DEG ++FV L F N Q L+ +F G + VV DR+ +SRGFG V +
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 141 NDAIRHWTGTEYKGRVLDVKE-GKGTSTRT 169
DA+ G GR + V + GK + R+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 90
Score = 32.0 bits (71), Expect = 1.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 1 MKEYFGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+++ F K G++ ++ R RG G V F N D A+ +G ++GR I V Q
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 47.0 bits (110), Expect = 3e-05
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
++F+ + +S++ L++ F G+V+ V+ DR+ G+SRGFG V + E + AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 147 WTGTEYKGRVLDV 159
G + GRV+ V
Sbjct: 101 LDGRDLHGRVVKV 113
Score = 39.3 bits (90), Expect = 0.007
Identities = 24/62 (38%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++E F K GEV +I R G RG G V F +S +AI+ DG L+GR + V
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
Query: 59 DN 60
N
Sbjct: 116 AN 117
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 47.0 bits (110), Expect = 3e-05
Identities = 45/201 (22%), Positives = 75/201 (36%), Gaps = 41/201 (20%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
VFV L S++ ++L DMF G VL V D G S+G+G V + A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDR 208
GT ++ + + + P D+
Sbjct: 93 GT--------------------------------------LIRNQHIHVCPFVSRGQWDK 114
Query: 209 NSV---IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADI 265
+ V ++ +N+ + T++DL LFG + ++ + EG R + FE E A
Sbjct: 115 SRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVT 174
Query: 266 CISKLDKYSYGDHELKVTYAR 286
I K++ + EL V A+
Sbjct: 175 AIEKMNGVVVDEKELHVGRAQ 195
Score = 37.4 bits (85), Expect = 0.025
Identities = 58/282 (20%), Positives = 102/282 (35%), Gaps = 45/282 (15%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPA 64
FGK+ + A + G +G G V+F + V TA +G + + I V
Sbjct: 54 FGKVLSCKVAR--DASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPF----- 106
Query: 65 EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG 124
+SR V+V L + +LK +F G++ A V+ D +G
Sbjct: 107 -VSRGQWDKSRVFT---------NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEG 156
Query: 125 KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRN 184
KSR FG V E AI G + L V + + RT
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRT--------------- 201
Query: 185 EPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLN 244
LK K +++ + + ++ +N+ S + L +LF + +
Sbjct: 202 ---EDLKAK-FELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCNKGV- 256
Query: 245 PEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ +F T E+A + K++ G+ + V+ A+
Sbjct: 257 --------GFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 290
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 46.6 bits (109), Expect = 4e-05
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAI 144
GF V+V PF +L + F G+V + +V DR+ G+ RGF V + A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 145 RHWTGTEYKGRVLDV 159
+ G ++ GR L V
Sbjct: 63 DQFNGVDFNGRALRV 77
Score = 33.1 bits (74), Expect = 0.47
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 4 YFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
YF + G V I+ R G RG VEF A+ +G NGRA+ V
Sbjct: 23 YFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRV 77
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 46.6 bits (109), Expect = 4e-05
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIR 145
F V+V PF +EL + F G + + +V DR+ G+ RGF + A + A+
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 146 HWTGTEYKGRVLDV 159
G E+ GR L V
Sbjct: 65 QMNGAEFNGRPLRV 78
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 2/59 (3%)
Query: 4 YFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+F IG++ I+ R G RG +EF A+ +GA NGR + V N
Sbjct: 24 FFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLAN 82
>Hs4506903 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 221
Score = 46.2 bits (108), Expect = 5e-05
Identities = 36/110 (32%), Positives = 51/110 (45%), Gaps = 18/110 (16%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRH 146
F V V+ LP S +WQ+LKD + GDV +ADV D G G V KE A+R
Sbjct: 111 FRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD------GVGMVEYLRKEDMEYALRK 164
Query: 147 WTGTEYKGR-----VLDVKEGKGTS-----TRTAATGADTYIPRQPRNEP 186
T+++ + V + TS +R+ + G D+ P Q R P
Sbjct: 165 LDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDS--PYQSRGSP 212
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 205 GGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDAD 264
GG+ + I+ N+P+ E DL DLF I ++ L ++ +FE P DA+
Sbjct: 9 GGEGDGRIYVGNLPTDVREKDLEDLFYKYGR--IREIELKNRHGLVPFAFVRFEDPRDAE 66
Query: 265 ICISKLDKYSYGDHELKVTYAR 286
I + Y YG L+V + R
Sbjct: 67 DAIYGRNGYDYGQCRLRVEFPR 88
>At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 473
Score = 46.2 bits (108), Expect = 5e-05
Identities = 38/155 (24%), Positives = 67/155 (42%), Gaps = 24/155 (15%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++F+ + + + + L+D F GDV+ A ++ DR G++RGFG + A I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGG 206
+ +G+ + A D + + R+ P L + GG
Sbjct: 67 ----------KHIIDGRTVEAKKAVPRDDQQVLK--RHASPIHLMS--------PVHGGG 106
Query: 207 DRNSVIFCENMPSSTTESDL---YDLFGSVAPVII 238
R IF +PSS TE + +D FG++A V++
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Score = 45.1 bits (105), Expect = 1e-04
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRD---CDGAFLNGRAIF 55
+++YF G+V A I+ R G RG G + F + + I D DG + +
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAV 81
Query: 56 VRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLH 115
R D + R ++FV LP S+ +E K+ F G +
Sbjct: 82 PRDDQ---QVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Query: 116 ADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
V+ D + + RGFG + + D + H T E G++++VK
Sbjct: 139 VVVMYDHNTQRPRGFGFITF-DSDDAVDRVLHKTFHELNGKLVEVK 183
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 46.2 bits (108), Expect = 5e-05
Identities = 68/288 (23%), Positives = 108/288 (36%), Gaps = 34/288 (11%)
Query: 5 FGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
F EV +I ++ G G VEF + + + A++ G + P
Sbjct: 139 FSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTM------------P 186
Query: 63 PAEISRTXXXXXXXXXXKRAHDEG--FEVFVAQLPFSVNWQELKDMFKP-CGDVLHADVV 119
AE KRA + G +FV L V+ L + F V A VV
Sbjct: 187 NAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVV 246
Query: 120 TDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYI 178
D + G+S+G+G V + +++ A+ G R + V G T R AA G
Sbjct: 247 IDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRV--GIATPKRAAAYG----- 299
Query: 179 PRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVII 238
Q TL +++ G NS IF + + TE DL F V+
Sbjct: 300 --QQNGSQALTLAGGHGGNG--SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVS 355
Query: 239 TKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
K+ P G + QF + A+ I L+ G + +++++ R
Sbjct: 356 VKI---PVGKGC--GFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGR 398
Score = 36.2 bits (82), Expect = 0.056
Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)
Query: 1 MKEYFGKIGEVRRADII--TSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ + G+ V+ A ++ ++ G +G G V F + + A+ + +GAF + R + V
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGI 289
Query: 59 DNPPPA---------EISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKP 109
P A + +FV L V ++L F
Sbjct: 290 ATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSD 349
Query: 110 CGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGT 150
G+V+ + +G G V A ++ +AI + GT
Sbjct: 350 FGEVVSVKIPV-----GKGCGFVQFANRQSAEEAIGNLNGT 385
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 45.8 bits (107), Expect = 7e-05
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 23/186 (12%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQND 142
+E VFV +L ++V+ Q L F+ G ++ A V+ D + G+S+G+G V T E
Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKA 319
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAI 202
A+ E GR++++ D PR P N P + D L+
Sbjct: 320 AVAANGTKEIDGRMVNL---------------DLSNPR-PANPQPYAQQRAGNFGDQLS- 362
Query: 203 TTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPE 261
+ + +F N+ + TE DL FG + +L +P+ G Y F +
Sbjct: 363 ----EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 262 DADICI 267
A C+
Sbjct: 419 SAKKCV 424
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 4/131 (3%)
Query: 5 FGKIGEVRRADIITS--RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
F + G + A +I G +G G V+F A+ ++GR + + NP
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD- 121
PA + + + VFV L F+ +L F CGD+ + TD
Sbjct: 343 PAN-PQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
Query: 122 RDGKSRGFGTV 132
+ G+ +GFG V
Sbjct: 402 QSGRLKGFGYV 412
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 45.8 bits (107), Expect = 7e-05
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
VFV + + V+ ++ +F G+VL +V DR+ GK +G+G + + AIR+
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 148 TGTEYKGRVLDVKEGKG 164
G E GR+L V G
Sbjct: 80 NGYELSGRILRVDSAAG 96
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++ F K G V ++ R G +G G +EF + + AIR+ +G L+GR + V
Sbjct: 34 IRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRV 91
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 45.8 bits (107), Expect = 7e-05
Identities = 24/83 (28%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQ 140
+ D + F+ L ++ + + L+D F+ G ++ A VV D+ G+SRGFG + K+
Sbjct: 2 SEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAM 61
Query: 141 NDAIRHWTGTEYKGRVLDVKEGK 163
++AI G + GR + V + +
Sbjct: 62 DEAIAAMNGMDLDGRTITVDKAQ 84
Score = 34.7 bits (78), Expect = 0.16
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+++ F K G + A ++ + G RG G + F+ +D AI +G L+GR I V +
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 59 DNP 61
P
Sbjct: 83 AQP 85
>At5g19960 [R] KOG0118 FOG: RRM domain
Length = 335
Score = 45.4 bits (106), Expect = 9e-05
Identities = 22/78 (28%), Positives = 39/78 (49%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
D+G V+V LP+ + + ++ +F G VL +V DR + + +G V + + +DA
Sbjct: 2 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDA 61
Query: 144 IRHWTGTEYKGRVLDVKE 161
I G GR + V +
Sbjct: 62 IEDMDGKSIGGRAVRVND 79
Score = 32.3 bits (72), Expect = 0.80
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 1 MKEYFGKIGEVRRADIITSRG-HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++ F G V I+ R + G V F+N D AI D DG + GRA+ V
Sbjct: 21 VRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRV 77
>At3g49430 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 243
Score = 45.4 bits (106), Expect = 9e-05
Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 29 VEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEG-- 86
VEF +S D + AI+ DG L+G + V + + S G
Sbjct: 50 VEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGG 109
Query: 87 ------------FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYM 134
F V V LP S +WQ+LKD + GDV A+V D DG +G V
Sbjct: 110 GSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGT---YGVVDY 166
Query: 135 ATKEQQNDAIRH 146
+ A+R+
Sbjct: 167 TNYDDMKYAVRN 178
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/287 (18%), Positives = 108/287 (37%), Gaps = 50/287 (17%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+KE F E+R +++ G +G+ +EF D + + G ++GR+I +
Sbjct: 409 LKEVFEDAAEIR---LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 465
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ E + ++ L +S + L+++F+ + V
Sbjct: 466 ------EKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ 516
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
+++GKS+G+ + A+ E +A+ E +GR + ++ +
Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE------------------LQ 558
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLF-GSVAPVIIT 239
PR P A +P + +F + + TTE L + F GSV I+T
Sbjct: 559 GPRGSPNARSQP----------------SKTLFVKGLSEDTTEETLKESFDGSVRARIVT 602
Query: 240 KLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
G + F + EDA ++ +++ + +A+
Sbjct: 603 D---RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Score = 38.1 bits (87), Expect = 0.015
Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 56/255 (21%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIF---VRQDNPPPAEISRTXXXXXXXX 77
G R G V+F ++ D++ A+ L G +F ++ + P +
Sbjct: 344 GMTRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD------------ 385
Query: 78 XXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATK 137
+ + + LP+ V ELK++F+ ++ + +DGKS+G + T+
Sbjct: 386 --SKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTE 439
Query: 138 EQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDI 197
GTE GR + + Y + +N+ D
Sbjct: 440 ADAEKTFEEKQGTEIDGRSISL----------------YYTGEKGQNQ----------DY 473
Query: 198 DPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQF 257
+T + + N+ S TE L ++F K+ N G ++ +F
Sbjct: 474 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT---FIKVPQNQNGKSKGYAFIEF 530
Query: 258 ETPEDADICISKLDK 272
+ EDA ++ +K
Sbjct: 531 ASFEDAKEALNSCNK 545
>At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 492
Score = 45.1 bits (105), Expect = 1e-04
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 40/162 (24%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++F+ + + N + LK+ F G+V+ A ++ DR G++RGFG V A + A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA-----DPAVAE 61
Query: 147 WTGTE---YKGRVLDVKEGKGTSTRTAATGADTYIPRQPRN----EPPATLKPKPLDIDP 199
TE GR+++ K+ +PR +N ++++ P
Sbjct: 62 IVITEKHNIDGRLVEAKKA---------------VPRDDQNMVNRSNSSSIQGSP----- 101
Query: 200 LAITTGGDRNSVIFCENMPSSTTESDL---YDLFGSVAPVII 238
G R IF +PSS TESD ++ FG+ V++
Sbjct: 102 ----GGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVV 139
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/163 (25%), Positives = 67/163 (40%), Gaps = 6/163 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+KEYF GEV A I+ R G RG G V F + + I + ++GR + ++
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHN--IDGRLVEAKK 79
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
P + ++FV LP SV + K F+ G V
Sbjct: 80 AVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVV 139
Query: 119 VTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
+ D + + RGFG + ++E + T E G++++VK
Sbjct: 140 MYDHNTQRPRGFGFITYDSEEAVEKVLLK-TFHELNGKMVEVK 181
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 44.7 bits (104), Expect = 2e-04
Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 50/264 (18%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
+KE F E+R +++ G +G+ +EF D + + G ++GR+I +
Sbjct: 409 LKEVFEDAAEIR---LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 465
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ E + ++ L +S + L+++F+ + V
Sbjct: 466 ------EKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ 516
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
+++GKS+G+ + A+ E +A+ E +GR + ++ +
Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE------------------LQ 558
Query: 181 QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLF-GSVAPVIIT 239
PR P A +P + +F + + TTE L + F GSV I+T
Sbjct: 559 GPRGSPNARSQP----------------SKTLFVKGLSEDTTEETLKESFDGSVRARIVT 602
Query: 240 KLLLNPEGHFTRNSYCQFETPEDA 263
G + F + EDA
Sbjct: 603 D---RETGSSKGFGFVDFNSEEDA 623
Score = 38.1 bits (87), Expect = 0.015
Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 56/255 (21%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIF---VRQDNPPPAEISRTXXXXXXXX 77
G R G V+F ++ D++ A+ L G +F ++ + P +
Sbjct: 344 GMTRKFGYVDFESAEDLEKALE------LTGLKVFGNEIKLEKPKGKD------------ 385
Query: 78 XXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATK 137
+ + + LP+ V ELK++F+ ++ + +DGKS+G + T+
Sbjct: 386 --SKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGKSKGIAYIEFKTE 439
Query: 138 EQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDI 197
GTE GR + + Y + +N+ D
Sbjct: 440 ADAEKTFEEKQGTEIDGRSISL----------------YYTGEKGQNQ----------DY 473
Query: 198 DPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQF 257
+T + + N+ S TE L ++F K+ N G ++ +F
Sbjct: 474 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKAT---FIKVPQNQNGKSKGYAFIEF 530
Query: 258 ETPEDADICISKLDK 272
+ EDA ++ +K
Sbjct: 531 ASFEDAKEALNSCNK 545
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 44.7 bits (104), Expect = 2e-04
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 22 HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKR 81
+H+G G VEF D D AI+ + L G+ I V + ++
Sbjct: 62 NHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNK-----------------ASAHEK 104
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA-DVVTDRD-GKSRGFGTVYMATKEQ 139
D G +FV L V+ + L D F G +L ++ D D G S+GF + A+ E
Sbjct: 105 NMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEA 164
Query: 140 QNDAIRHWTGTEYKGRVLDV-----KEGKGTSTRTAATG-ADTYIPRQPRNEPPATLKPK 193
+ A+ G R + V ++ KG TAA P P++ P
Sbjct: 165 SDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDV 224
Query: 194 PLDI---DPLAI 202
PL + PLA+
Sbjct: 225 PLGVPANTPLAM 236
>At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 600
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 3 EYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
E+F + G+VR II R RG+G VEF ++ V AI G L G+ + V+
Sbjct: 200 EFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA-LSGQPLLGQPVMVKPSE 258
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
+ T ++V L +++ +L+ +F+ G V V
Sbjct: 259 AEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPR 318
Query: 121 DRDGKSRGFGTVYMAT 136
D G +GFG V + +
Sbjct: 319 DETGLCKGFGFVQVGS 334
>SPBC3B9.11c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 363
Score = 44.3 bits (103), Expect = 2e-04
Identities = 22/76 (28%), Positives = 40/76 (51%), Gaps = 1/76 (1%)
Query: 210 SVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADICIS 268
+V+F N+P +E + ++F V PV KL+L+PE G +C+F E + +
Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66
Query: 269 KLDKYSYGDHELKVTY 284
KL+ G +++V +
Sbjct: 67 KLNNSELGPRKIRVEF 82
Score = 33.5 bits (75), Expect = 0.36
Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAI 144
G VFV +P+ V+ Q++ ++F G V +V D + G +G+G E A+
Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 145 RHWTGTEYKGRVLDVK 160
R +E R + V+
Sbjct: 66 RKLNNSELGPRKIRVE 81
>CE29126 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 580
Score = 44.3 bits (103), Expect = 2e-04
Identities = 40/168 (23%), Positives = 66/168 (38%), Gaps = 22/168 (13%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++E+F +G VR IIT G +G+ VEF + V G LNG+ +
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPL------GLALNGQRLM--- 236
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGF---------EVFVAQLPFSVNWQELKDMFKP 109
P +I RT A GF V V L ++ + ++D+F+
Sbjct: 237 --GAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFES 294
Query: 110 CGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVL 157
G + D+ D + ++RGF T+ + + E GR +
Sbjct: 295 FGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCI 342
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 1/87 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
++F+ L + + L+D F GDV+ A V+ DR+ G+SRGFG V + AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAATG 173
G E GR + V + A G
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYG 122
Score = 42.4 bits (98), Expect = 8e-04
Identities = 25/66 (37%), Positives = 33/66 (49%), Gaps = 2/66 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+++ F G+V A +I R G RG G V FN+ AI + DG LNGR I V
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 59 DNPPPA 64
N P+
Sbjct: 111 ANDRPS 116
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 44.3 bits (103), Expect = 2e-04
Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 39/272 (14%)
Query: 19 SRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXX 78
+ G G G VEF + D +R+ +G + P +
Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNGTTM------------PNTDQPFRLNWASFSTG 186
Query: 79 XKRAHDEG--FEVFVAQLPFSVNWQELKDMF-KPCGDVLHADVVTDRD-GKSRGFGTVYM 134
KR + G +FV L V+ L + F + V A VV D + G+S+G+G V
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 135 ATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKP 194
+ ++ A+ G + R + + G T +T +Q P TL
Sbjct: 247 GDENERTKAMTEMNGVKCSSRAMRI--GPATPRKTNG------YQQQGGYMPNGTLTRPE 298
Query: 195 LDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSY 254
DI N+ IF + SS T+ DL F ++ K+ P G +
Sbjct: 299 GDI----------MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVGKGC--GF 343
Query: 255 CQFETPEDADICISKLDKYSYGDHELKVTYAR 286
QF +A+ + KL+ G +++++ R
Sbjct: 344 VQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 375
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 43.9 bits (102), Expect = 3e-04
Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR-GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+YF G + I+ + + VE++ S D + A++ +G + + +
Sbjct: 91 LKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW- 149
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV 119
+ + D+ F +FV L +V+ + L++ FK L V+
Sbjct: 150 ---------------AFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVM 194
Query: 120 TD-RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
D + G SRG+G V +++ +A+ G + GR L +
Sbjct: 195 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
Score = 33.5 bits (75), Expect = 0.36
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 181 QPRNEPPATLKPK--PLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVII 238
QP+ L P+ P +D + I + R + + N+P TE+DL LF + ++
Sbjct: 311 QPQQSQTIGLPPQVNPQAVDHI-IRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILD 369
Query: 239 TKLLLNPEGHFTRNSYC--QFETPEDADICISKLDKYSYGDHELKVTYAR 286
K H+ C +++T E A +CI L + + L+ + +
Sbjct: 370 FK-------HYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 412
>Hs14719414 [R] KOG0118 FOG: RRM domain
Length = 283
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+FV + F N +L+ F G V +V DR G S+G+G V T+E ++
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94
Query: 149 GTEYKGRVLDV 159
YK + L++
Sbjct: 95 KLNYKDKKLNI 105
Score = 38.5 bits (88), Expect = 0.011
Identities = 27/96 (28%), Positives = 41/96 (42%)
Query: 187 PATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE 246
P + P PL+ A G + IF + T ESDL F V K++ +
Sbjct: 10 PNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA 69
Query: 247 GHFTRNSYCQFETPEDADICISKLDKYSYGDHELKV 282
G + FET EDA + + +K +Y D +L +
Sbjct: 70 GVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNI 105
>At5g19350 [R] KOG0118 FOG: RRM domain
Length = 425
Score = 43.5 bits (101), Expect = 3e-04
Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 29/288 (10%)
Query: 5 FGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
F + GE+ +I ++ G G G +EF + + ++ +G + P
Sbjct: 44 FSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQM------------P 91
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKP-CGDVLHADVVTD 121
E++ K +FV L V L++ F+ V A VVTD
Sbjct: 92 GTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTD 151
Query: 122 RD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
G+S+G+G V A + ++N A+ G R + + + + Y+ +
Sbjct: 152 PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI---SAATPKKNVGVQQQYVTK 208
Query: 181 --QPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVII 238
P P A P + P + I N+ + TE +L F + VI
Sbjct: 209 AVYPVTVPSAVAAPVQAYVAP---PESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIY 265
Query: 239 TKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
K+ +G+ Y QF+T A+ + ++ G +++++++
Sbjct: 266 VKIPAT-KGY----GYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 308
>At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1003
Score = 43.5 bits (101), Expect = 3e-04
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1 MKEYFGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++E F ++G VRR ++T++G HRG V+F DV+ AI +G+ + GR I V+Q
Sbjct: 36 LEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQ 95
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 1/74 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDG-KSRGFGTVYMATKEQQNDAIRHW 147
V V+ LP+S+ +L++ F G V +VT++ + RGF V A +E N AI
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 148 TGTEYKGRVLDVKE 161
G+ GR + VK+
Sbjct: 82 NGSTVGGRRITVKQ 95
>Hs9506671 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 524
Score = 43.1 bits (100), Expect = 5e-04
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR 145
G EVFV ++P V EL +F+ G ++ D DGK+RG+ V K + A+R
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVR 129
Query: 146 HWTGTEYK-GRVLDV 159
E + GR+L V
Sbjct: 130 ELNNYEIRPGRLLGV 144
>Hs7661936 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment
factor (SAF-B)
Length = 953
Score = 43.1 bits (100), Expect = 5e-04
Identities = 26/79 (32%), Positives = 44/79 (54%), Gaps = 1/79 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAI 144
G ++V+ L + +LK++F G V+ A VVT+ R +R +G V M+T ++ I
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465
Query: 145 RHWTGTEYKGRVLDVKEGK 163
H TE GR++ V++ K
Sbjct: 466 SHLHRTELHGRMISVEKAK 484
Score = 29.6 bits (65), Expect = 5.2
Identities = 21/86 (24%), Positives = 38/86 (43%), Gaps = 3/86 (3%)
Query: 202 ITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTR-NSYCQFETP 260
+ +G RN ++ + S+T +DL +LF V+ K++ N R + T
Sbjct: 401 VGSGSGRN--LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTS 458
Query: 261 EDADICISKLDKYSYGDHELKVTYAR 286
++A CIS L + + V A+
Sbjct: 459 DEATKCISHLHRTELHGRMISVEKAK 484
>CE07598 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 351
Score = 43.1 bits (100), Expect = 5e-04
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 13/110 (11%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
++V+ +PFS Q+L MF G VL ++VT+ D S+GFG V + + E A
Sbjct: 53 IYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN-DRGSKGFGFVTLDSIESCEKARAALH 111
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDID 198
+ +GR+++V+ + T TR + P+NE L P L +D
Sbjct: 112 ESHVQGRIIEVR--RATPTRRK-------LINNPQNE---VLPPPKLCVD 149
>At2g16260 [R] KOG0118 FOG: RRM domain
Length = 185
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/91 (27%), Positives = 44/91 (47%), Gaps = 2/91 (2%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQND 142
D + FV L ++ + Q ++ F G+V + ++ DR+ G+S+GF V ++
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRT 100
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATG 173
AI G E GR + + +G+ TR G
Sbjct: 101 AIDRMNGQELDGRNI-TAQARGSGTRGGMVG 130
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 42.7 bits (99), Expect = 6e-04
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 24/156 (15%)
Query: 23 HRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRA 82
H+ G +E+ + D D AI+ + L+G+ I V + K++
Sbjct: 65 HQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNK-----------------ASQDKKS 107
Query: 83 HDEGFEVFVAQLPFSVNWQELKDMFKPCGDVL-HADVVTDRD-GKSRGFGTVYMATKEQQ 140
D G +F+ L V+ + L D F G + + ++ D D G SRGFG + + E
Sbjct: 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEAS 167
Query: 141 NDAIRHWTGTEYKGRVLDV-----KEGKGTSTRTAA 171
+ AI TG R + V K+ KG T A
Sbjct: 168 DAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPA 203
>HsM4506779 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment
factor (SAF-B)
Length = 915
Score = 42.4 bits (98), Expect = 8e-04
Identities = 26/79 (32%), Positives = 43/79 (53%), Gaps = 1/79 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAI 144
G +V+ L + +LK++F G V+ A VVT+ R +R +G V M+T E+ I
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 145 RHWTGTEYKGRVLDVKEGK 163
H TE G+++ V++ K
Sbjct: 465 NHLHKTELHGKMISVEKAK 483
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 42.4 bits (98), Expect = 8e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQND 142
+EG ++FV L F+ + Q L+D F G + VV DR+ +SRGFG + E +
Sbjct: 4 EEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62
Query: 143 AIRHWTGTEYKGRVLDV----KEGKGT 165
A+R G GR + V K +GT
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGT 89
Score = 30.8 bits (68), Expect = 2.3
Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 2/58 (3%)
Query: 1 MKEYFGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++++F G + ++ R RG G + F N A+R +G L+GR I V
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRV 79
>Hs21264343 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment
factor (SAF-B)
Length = 915
Score = 42.4 bits (98), Expect = 8e-04
Identities = 26/79 (32%), Positives = 43/79 (53%), Gaps = 1/79 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAI 144
G +V+ L + +LK++F G V+ A VVT+ R +R +G V M+T E+ I
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 145 RHWTGTEYKGRVLDVKEGK 163
H TE G+++ V++ K
Sbjct: 465 NHLHKTELHGKMISVEKAK 483
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 42.4 bits (98), Expect = 8e-04
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
+++ LP + L ++F G+++ A V+ DR G S+G+G V A + N A++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIP----RQPRNEPP 187
G ++GR L V+ + A G P P N+PP
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAPPGPPAPQPPTQGYPPSNQPP 585
Score = 31.6 bits (70), Expect = 1.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 5 FGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR--QDN 60
F GE+ A +I R G +G G V++ + +TA++ +G GR + VR +
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKS 559
Query: 61 PPP 63
PPP
Sbjct: 560 PPP 562
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 42.4 bits (98), Expect = 8e-04
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 1/85 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
+++V+ L F L+D F+ G+++H ++V D+ + +GF + T+E+ AI+
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAA 171
G GRV+ V+E K S + A
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSRA 162
>At1g18630 [R] KOG0118 FOG: RRM domain
Length = 155
Score = 42.4 bits (98), Expect = 8e-04
Identities = 27/73 (36%), Positives = 41/73 (55%), Gaps = 1/73 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
++FV L S + + LK+ F G ++ A VV DR+ G SRGFG V + E N+A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 147 WTGTEYKGRVLDV 159
E GR++ V
Sbjct: 97 MQNKELDGRIIGV 109
>7299789 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 329
Score = 42.4 bits (98), Expect = 8e-04
Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 30/183 (16%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV---- 56
++ +F G R DI+ G+ G VEF + D D A+ + +G L G + V
Sbjct: 20 LERFFKGYGRTR--DILIKNGY----GFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 73
Query: 57 ---------RQDNPPPAEISRTXXXXXXXXXXKRAHDE-------GFEVFVAQLPFSVNW 100
R D+ R+ + + V L V+W
Sbjct: 74 GTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSW 133
Query: 101 QELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
Q+LKD + G+V +AD R R G V A+ AI TE GR + +
Sbjct: 134 QDLKDYMRQAGEVTYADAHKQR----RNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLV 189
Query: 161 EGK 163
E +
Sbjct: 190 EDR 192
Score = 40.0 bits (92), Expect = 0.004
Identities = 24/59 (40%), Positives = 32/59 (53%), Gaps = 3/59 (5%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+K+Y + GEV AD R R G VEF + +D+ TAI D LNGR I + +D
Sbjct: 136 LKDYMRQAGEVTYADAHKQR---RNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED 191
Score = 31.6 bits (70), Expect = 1.4
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR 145
G V+V LP+ V ++L+ FK G D++ G+G V +DA+
Sbjct: 3 GSRVYVGGLPYGVRERDLERFFKGYGRT--RDILI-----KNGYGFVEFEDYRDADDAVY 55
Query: 146 HWTGTEYKGRVLDVKEGKGTS 166
G E G + V+ +GT+
Sbjct: 56 ELNGKELLGERVVVEPARGTA 76
>7296432 [K] KOG1548 Transcription elongation factor TAT-SF1
Length = 556
Score = 42.4 bits (98), Expect = 8e-04
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 182 PRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIIT-- 239
P + A PK ++DPL +N+ ++ N+P T + DL G V+
Sbjct: 263 PTGKRKAQEPPKWFEMDPL-------QNTKVYVSNLPLDITMDEFADLMGKCGMVMRDPQ 315
Query: 240 ------KLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYARF 287
KL +G + C + E ++ + LD+Y+ H+++V A+F
Sbjct: 316 TQKFKLKLYAEKDGQIKGDGLCDYIKVESVNLALKILDEYNLRGHKIRVQRAQF 369
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 1 MKEYFGKIGEVRRADIITSRGH-----HRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIF 55
+KE F K+G V+ I + G G VE+ A++ G ++G +
Sbjct: 746 LKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLE 805
Query: 56 VR---QDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
VR + P ++R K + V +PF + +E++++F G+
Sbjct: 806 VRISERATKPAVTLARKKQVPRKQTTSK--------ILVRNIPFQAHSREIRELFSTFGE 857
Query: 113 V--LHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ + G RGFG V TK+ A
Sbjct: 858 LKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 39.7 bits (91), Expect = 0.005
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 12/186 (6%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-RQDNP 61
E+ + V + + G+ G V+F+N +V A++ C+ ++ GR I V R+ N
Sbjct: 312 EFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKNV 370
Query: 62 PPAEIS--RTXXXXXXXXXXKRAHDEGF----EVFVAQLPFSVNWQELKDMFKPCGDVLH 115
P + + T + +E +FV LP++ ++L+ +F G +
Sbjct: 371 PTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE 430
Query: 116 ADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEG---KGTSTRTAA 171
D K +GF + E A G ++GR+L V K S +A
Sbjct: 431 LHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASA 490
Query: 172 TGADTY 177
G+ +Y
Sbjct: 491 LGSSSY 496
Score = 33.9 bits (76), Expect = 0.28
Identities = 23/107 (21%), Positives = 44/107 (40%), Gaps = 2/107 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ V LP + + + +F G + + +DGK R FG + ++E+ A +H+
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 149 GTEYKGRVLDVKEGK--GTSTRTAATGADTYIPRQPRNEPPATLKPK 193
+ + V+ K G + A P QP+ P + P+
Sbjct: 64 KSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPE 110
Score = 33.5 bits (75), Expect = 0.36
Identities = 42/183 (22%), Positives = 72/183 (38%), Gaps = 26/183 (14%)
Query: 95 PFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKG 154
PF+V + + + P V +V + G G+ V + +E+ A++ EY G
Sbjct: 302 PFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYIFVDFSNEEEVKQALK--CNREYMG 358
Query: 155 -RVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIF 213
R ++V K T A P+ + + + + LA + +F
Sbjct: 359 GRYIEVFREKNVPTTKGA-------PKNTTKSWQGRILGENEEEEDLA------ESGRLF 405
Query: 214 CENMPSSTTESDLYDLFGSVAPVI-----ITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
N+P ++TE DL LF P+ I L P+G ++ F PE A S
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGF----AFITFMFPEHAVKAYS 461
Query: 269 KLD 271
++D
Sbjct: 462 EVD 464
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/51 (35%), Positives = 23/51 (44%), Gaps = 1/51 (1%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRD-CDGAFLNGRAI 54
FG++ VR +T G HRG G V+F D A C L GR +
Sbjct: 855 FGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 1 MKEYFGKIGEVRRADIITSRGH-----HRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIF 55
+KE F K+G V+ I + G G VE+ A++ G ++G +
Sbjct: 746 LKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLE 805
Query: 56 VR---QDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
VR + P ++R K + V +PF + +E++++F G+
Sbjct: 806 VRISERATKPAVTLARKKQVPRKQTTSK--------ILVRNIPFQAHSREIRELFSTFGE 857
Query: 113 V--LHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ + G RGFG V TK+ A
Sbjct: 858 LKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 39.7 bits (91), Expect = 0.005
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 12/186 (6%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-RQDNP 61
E+ + V + + G+ G V+F+N +V A++ C+ ++ GR I V R+ N
Sbjct: 312 EFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKNV 370
Query: 62 PPAEIS--RTXXXXXXXXXXKRAHDEGF----EVFVAQLPFSVNWQELKDMFKPCGDVLH 115
P + + T + +E +FV LP++ ++L+ +F G +
Sbjct: 371 PTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE 430
Query: 116 ADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEG---KGTSTRTAA 171
D K +GF + E A G ++GR+L V K S +A
Sbjct: 431 LHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASA 490
Query: 172 TGADTY 177
G+ +Y
Sbjct: 491 LGSSSY 496
Score = 33.9 bits (76), Expect = 0.28
Identities = 23/107 (21%), Positives = 44/107 (40%), Gaps = 2/107 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ V LP + + + +F G + + +DGK R FG + ++E+ A +H+
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 149 GTEYKGRVLDVKEGK--GTSTRTAATGADTYIPRQPRNEPPATLKPK 193
+ + V+ K G + A P QP+ P + P+
Sbjct: 64 KSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPE 110
Score = 33.5 bits (75), Expect = 0.36
Identities = 42/183 (22%), Positives = 72/183 (38%), Gaps = 26/183 (14%)
Query: 95 PFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKG 154
PF+V + + + P V +V + G G+ V + +E+ A++ EY G
Sbjct: 302 PFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYIFVDFSNEEEVKQALK--CNREYMG 358
Query: 155 -RVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIF 213
R ++V K T A P+ + + + + LA + +F
Sbjct: 359 GRYIEVFREKNVPTTKGA-------PKNTTKSWQGRILGENEEEEDLA------ESGRLF 405
Query: 214 CENMPSSTTESDLYDLFGSVAPVI-----ITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
N+P ++TE DL LF P+ I L P+G ++ F PE A S
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGF----AFITFMFPEHAVKAYS 461
Query: 269 KLD 271
++D
Sbjct: 462 EVD 464
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/51 (35%), Positives = 23/51 (44%), Gaps = 1/51 (1%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRD-CDGAFLNGRAI 54
FG++ VR +T G HRG G V+F D A C L GR +
Sbjct: 855 FGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905
>Hs17482675 [A] KOG4212 RNA-binding protein hnRNP-M
Length = 175
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++FV LPF+ W+ LKD F G +L+ D+ + +GKS+G V + E R
Sbjct: 108 QIFVRNLPFNFTWKMLKDKFNEYGHMLYTDIEME-NGKSKGCSVVKFTSPEVAERVCRIM 166
Query: 148 TGTEYKGR 155
+ G+
Sbjct: 167 NNMQLNGQ 174
>Hs14110417 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 42.0 bits (97), Expect = 0.001
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKE 138
K DEG ++F+ L + ++LKD F G+V+ + D G+SRGFG V E
Sbjct: 72 KNEEDEG-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 130
Query: 139 QQNDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
D + + G+V+D K K T+
Sbjct: 131 SV-DKVMDQKEHKLNGKVIDPKRAKAMKTK 159
Score = 35.0 bits (79), Expect = 0.12
Identities = 40/145 (27%), Positives = 64/145 (43%), Gaps = 28/145 (19%)
Query: 1 MKEYFGKIGEV----RRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+K+YF K GEV + D IT G RG G V F S VD + D LNG+ I
Sbjct: 94 LKDYFSKFGEVVDCTLKLDPIT--GRSRGFGFVLFKESESVD-KVMDQKEHKLNGKVI-- 148
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+P A+ +T + ++FV L +++++ F G+V
Sbjct: 149 ---DPKRAKAMKT-------------KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 192
Query: 117 DVVTD-RDGKSRGFGTVYMATKEQQ 140
++ D + K RGF ++ KE++
Sbjct: 193 ELPMDNKTNKRRGF--CFITFKEEE 215
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/76 (30%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDA 143
+GF V+V +P+ +E+ + F G V + +V DR+ G+ RGF V + + A
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRA 63
Query: 144 IRHWTGTEYKGRVLDV 159
+ G + GR L V
Sbjct: 64 VEQLNGVAFNGRNLRV 79
Score = 35.0 bits (79), Expect = 0.12
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 4 YFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
YF +G V I+ R G RG VEF+ A+ +G NGR + V N
Sbjct: 25 YFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYAN 83
>SPBC29A3.07c [R] KOG0114 Predicted RNA-binding protein (RRM superfamily)
Length = 137
Score = 41.6 bits (96), Expect = 0.001
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 203 TTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPED 262
T + NS++F +N+ T ++YDLFG PV ++ L ++ +E +D
Sbjct: 5 TVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPV--RQIRLGNTVQTRGTAFVVYENVQD 62
Query: 263 ADICISKLDKYSYGDHELKVTY 284
A KL Y++ D L V Y
Sbjct: 63 ARRACEKLSGYNFMDRYLVVHY 84
>Hs14192947 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 216
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATK 137
++FV LP+ L+ F+ GD+ A V+TDR GKSRG+G V MA +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
>CE26938 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 205
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1 MKEYFGKIGEVRRADIITSRGH---HRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++E F G ++ D+ R H HRG G VE++N D + +I+ DG ++G A+ V
Sbjct: 65 LEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHV 123
Score = 32.0 bits (71), Expect = 1.0
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR--DGKSRGFGTVYMATKEQQNDAIRH 146
V + L +V L+++F G + + D+ DR + RG+G V E +I+H
Sbjct: 51 VVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKH 110
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLD 196
G + G + V+ G + +P Q R+ P P P D
Sbjct: 111 MDGGQIDGMAVHVEMTIGRQS----------VPFQRRSSPFRRRSPPPRD 150
>CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 584
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/101 (25%), Positives = 45/101 (43%), Gaps = 8/101 (7%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTV--------YMATKEQ 139
++F+ QL N + L+++F G + V+ D+DGKSRG V +ATKE
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 140 QNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPR 180
+ + D ++ K T++ TG+ P+
Sbjct: 203 HHSQTMEGCSAPLVVKFADTQKDKDVKTKSMITGSGAGSPK 243
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/77 (27%), Positives = 34/77 (43%), Gaps = 1/77 (1%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDA 143
+G +F+ LP +L + F P G +L A V D+ S+ FG V + +A
Sbjct: 497 DGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 556
Query: 144 IRHWTGTEYKGRVLDVK 160
I G + + L V+
Sbjct: 557 ISAMNGFQIGSKRLKVQ 573
>At5g02530 [A] KOG0533 RRM motif-containing protein
Length = 290
Score = 41.6 bits (96), Expect = 0.001
Identities = 15/77 (19%), Positives = 43/77 (55%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ G +++++ L + V+ +++K++F GD+ + DR G+S+G V + + A
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAA 164
Query: 144 IRHWTGTEYKGRVLDVK 160
++ + + G+++ ++
Sbjct: 165 VKRYNNVQLDGKLMKIE 181
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/138 (23%), Positives = 59/138 (41%), Gaps = 29/138 (21%)
Query: 1 MKEYFGKIGEVRRADII--TSRGHHRGMGTVEFNNSTDVDTAI---RDCDGAFLNGRAIF 55
+++YF + GEV ++ ++ G RG G + F N V+ + DG ++ +
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAI 238
Query: 56 VRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLH 115
R++ A++ FV +P +E ++ F G VL
Sbjct: 239 PREEQEKTAKM-----------------------FVGGVPGDCTEEEFRNFFNQFGRVLD 275
Query: 116 ADVVTDRD-GKSRGFGTV 132
A ++ D+D G+ RGFG V
Sbjct: 276 ATLMMDKDTGRPRGFGFV 293
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/77 (27%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDA 143
E ++F+ L + L+D F+ G+VL V+ D G+SRGFG + + N+
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 144 IRHWTGTEYKGRVLDVK 160
+ G+++D K
Sbjct: 221 MS--KEHHLDGKIIDPK 235
>At4g09040 [R] KOG0118 FOG: RRM domain
Length = 225
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/104 (27%), Positives = 49/104 (46%), Gaps = 4/104 (3%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKP-CGDVLHADVVT-DRDGKSRGFGTVYMATKEQQNDAI 144
F +FVA L F + LK+ F G+V+ +V+ + +S G+G V TK+Q A+
Sbjct: 110 FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAAL 169
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPA 188
+ G ++ GR + + + K A G P + E P+
Sbjct: 170 IEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQP--PEEEAEEEPS 211
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/89 (31%), Positives = 43/89 (47%), Gaps = 4/89 (4%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
VFV +P+ ++L+++ G V+ +VTDR+ GK +G+G +E A R+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 148 TGTEYKGRVLDV---KEGKGTSTRTAATG 173
E GR L V + KGT A G
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTPGALG 99
Score = 38.5 bits (88), Expect = 0.011
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 202 ITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETP 260
+ + + +F N+P TE L ++ G V PV+ +L+ + E G +C+++
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 261 EDADICISKLDKYSYGDHELKVTYA 285
E A L Y +L+V +A
Sbjct: 61 ETALSARRNLQSYEINGRQLRVDFA 85
>At1g48920 [K] KOG4210 Nuclear localization sequence binding protein
Length = 557
Score = 41.2 bits (95), Expect = 0.002
Identities = 40/139 (28%), Positives = 62/139 (43%), Gaps = 21/139 (15%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
+F A L F++ ++++ FK G+V+ T+R DG RGFG V A+ E+ A+
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL--- 355
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGD 207
E+ GR L +E + D R R E PA P + + GGD
Sbjct: 356 ---EFHGRPLLGREIR----------LDIAQERGERGERPAF---TPQSGNFRSGGDGGD 399
Query: 208 RNSVIFCENMPSSTTESDL 226
IF + +S +E D+
Sbjct: 400 EKK-IFVKGFDASLSEDDI 417
Score = 38.9 bits (89), Expect = 0.009
Identities = 40/155 (25%), Positives = 66/155 (41%), Gaps = 17/155 (10%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-- 56
++ +F + GEV T+R G RG G VEF +S + A+ + G L GR I +
Sbjct: 313 VENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDI 371
Query: 57 ------RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPC 110
R + P S K+ +GF+ +++ L++ F C
Sbjct: 372 AQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIK---NTLREHFSSC 428
Query: 111 GDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAI 144
G++ + V DRD G S+G Y+ E + A+
Sbjct: 429 GEIKNVSVPIDRDTGNSKGI--AYLEFSEGKEKAL 461
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/132 (23%), Positives = 61/132 (45%), Gaps = 14/132 (10%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
+ V LP ++ +E++ +F G++ +V D+ G+S G+G V E A+
Sbjct: 28 LIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEKAVNTL 87
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRN--EPPATLKPKPLDIDPLAITTG 205
G + +V+ V + +S + GA+ Y+ P+N +P D++ + + G
Sbjct: 88 NGLRLQNKVIKVSYARPSS--ESIKGANLYVSGLPKNLSQP---------DLEGMFASFG 136
Query: 206 GDRNSVIFCENM 217
S I C+N+
Sbjct: 137 KIITSRILCDNI 148
Score = 30.0 bits (66), Expect = 4.0
Identities = 17/71 (23%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Query: 217 MPSSTTESDLYDLFGSVAPVIITKLLLNP-EGHFTRNSYCQFETPEDADICISKLDKYSY 275
+P + T+ ++ LF S+ + KL+ + G + + EDA+ ++ L+
Sbjct: 33 LPQTMTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEKAVNTLNGLRL 92
Query: 276 GDHELKVTYAR 286
+ +KV+YAR
Sbjct: 93 QNKVIKVSYAR 103
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 40.8 bits (94), Expect = 0.002
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 24/158 (15%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXK 80
G H+G G VEF + D D AI+ + L G+ I V +
Sbjct: 51 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNK-----------------ASAHN 93
Query: 81 RAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA-DVVTDRD-GKSRGFGTVYMATKE 138
+ D G +F+ L ++ + L D F G +L ++ D D G S+G+ + A+ +
Sbjct: 94 KNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 153
Query: 139 QQNDAIRHWTGTEYKGRVLDV-----KEGKGTSTRTAA 171
+ AI G R + V K+ KG +AA
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAA 191
>Hs14110420 [R] KOG0118 FOG: RRM domain
Length = 355
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQ 140
A E +++F+ L + ++LKD F G+V+ + D G+SRGFG V E
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 141 NDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
D + + G+V+D K K T+
Sbjct: 152 -DKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 35.0 bits (79), Expect = 0.12
Identities = 40/145 (27%), Positives = 64/145 (43%), Gaps = 28/145 (19%)
Query: 1 MKEYFGKIGEV----RRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+K+YF K GEV + D IT G RG G V F S VD + D LNG+ I
Sbjct: 113 LKDYFSKFGEVVDCTLKLDPIT--GRSRGFGFVLFKESESVD-KVMDQKEHKLNGKVI-- 167
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+P A+ +T + ++FV L +++++ F G+V
Sbjct: 168 ---DPKRAKAMKT-------------KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 117 DVVTD-RDGKSRGFGTVYMATKEQQ 140
++ D + K RGF ++ KE++
Sbjct: 212 ELPMDNKTNKRRGF--CFITFKEEE 234
>Hs14110414 [R] KOG0118 FOG: RRM domain
Length = 306
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQ 140
A E +++F+ L + ++LKD F G+V+ + D G+SRGFG V E
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 141 NDAIRHWTGTEYKGRVLDVKEGKGTSTR 168
D + + G+V+D K K T+
Sbjct: 152 -DKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 35.0 bits (79), Expect = 0.12
Identities = 40/145 (27%), Positives = 64/145 (43%), Gaps = 28/145 (19%)
Query: 1 MKEYFGKIGEV----RRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+K+YF K GEV + D IT G RG G V F S VD + D LNG+ I
Sbjct: 113 LKDYFSKFGEVVDCTLKLDPIT--GRSRGFGFVLFKESESVD-KVMDQKEHKLNGKVI-- 167
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+P A+ +T + ++FV L +++++ F G+V
Sbjct: 168 ---DPKRAKAMKT-------------KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 117 DVVTD-RDGKSRGFGTVYMATKEQQ 140
++ D + K RGF ++ KE++
Sbjct: 212 ELPMDNKTNKRRGF--CFITFKEEE 234
>ECU07g0340 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 333
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 30 EFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEV 89
+F+N +R+ DG GRA+ V + + P+EI + R DE V
Sbjct: 96 DFDNPHAAYLCMREIDGMVFEGRALKVGRTSTFPSEIPKEL----------RPPDESI-V 144
Query: 90 FVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTG 149
+++ + ++ ++L+D+FK G++ +V + +G+G V + A+ +
Sbjct: 145 YISNIDLNIEEEQLEDIFKKMGEIKGVRLVYESSFMHKGYGYVQFSRCIDAKKALGYSNK 204
Query: 150 TEYKGR 155
+ GR
Sbjct: 205 ISFCGR 210
>At5g59950 [A] KOG0533 RRM motif-containing protein
Length = 244
Score = 40.8 bits (94), Expect = 0.002
Identities = 21/88 (23%), Positives = 48/88 (53%), Gaps = 1/88 (1%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ G +++++ L + V +++K++F G++ V DR G+S+G V + + A
Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 144
Query: 144 IRHWTGTEYKGRVLDVKEGKGTSTRTAA 171
++ + + G+ + + E GT+ +TAA
Sbjct: 145 VKKYNDVQLDGKPMKI-EIVGTNLQTAA 171
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 40.8 bits (94), Expect = 0.002
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 3 EYFGKIGEVRRADIITSRGHHR--GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
E+F K G+VR +I R R G+G +EF + V AI G G+ + V+
Sbjct: 186 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLFLGQPVMVK--- 241
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
P AE + A +++V L F+++ +L+ +F+ G V +
Sbjct: 242 PSEAEKNLAQSNSTTVGGTGPADR---KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPL 298
Query: 121 DRD-GKSRGFGTVYMATKEQQNDAIRHWTG-TEYKGRVLDV 159
D + G+ +GFG + E A G E GR + V
Sbjct: 299 DPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At5g04810 [R] KOG4197 FOG: PPR repeat
Length = 949
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/117 (26%), Positives = 52/117 (43%), Gaps = 12/117 (10%)
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
R D PP E +R + EG ++FV LP + E ++ F+ G + +
Sbjct: 144 RSDTKPPEEETRNPQ--------QEFRQEG-KIFVGNLPTWIKKPEFEEFFRQFGPIENV 194
Query: 117 DVVTDRDG--KSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAA 171
++ K+ GFG + A ++ A+ + G E+ GR+L VK G +T A
Sbjct: 195 ILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE-FDGVEFHGRILTVKLDDGKRLKTKA 250
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/270 (20%), Positives = 97/270 (35%), Gaps = 39/270 (14%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXK 80
G G G VEF + D +++ +GA + P + K
Sbjct: 143 GSSEGYGFVEFESHDVADKVLQEFNGAPM------------PNTDQPFRLNWASFSTGEK 190
Query: 81 RAHDEG--FEVFVAQLPFSVNWQELKDMF-KPCGDVLHADVVTDRD-GKSRGFGTVYMAT 136
R + G +FV L V+ L + F + V A VV D + G+S+G+G V
Sbjct: 191 RLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 250
Query: 137 KEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLD 196
+ ++ A+ G + R + + P PR + +
Sbjct: 251 ENERTKAMTEMNGVKCSSRAMRIG------------------PATPRKTNGYQQQGGYMP 292
Query: 197 IDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQ 256
+ G N+ IF + SS T+ DL F ++ K+ P G + Q
Sbjct: 293 SGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVGKGC--GFVQ 347
Query: 257 FETPEDADICISKLDKYSYGDHELKVTYAR 286
F +A+ + KL+ G +++++ R
Sbjct: 348 FVNRPNAEEALEKLNGTVIGKQTVRLSWGR 377
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/135 (23%), Positives = 60/135 (43%), Gaps = 10/135 (7%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQND 142
D + V LP +++ E++ +F G+V ++ D+ G+S G+G V +E
Sbjct: 107 DPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEK 166
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAI 202
AI G + + + V + +S + GA+ Y+ P+N + D++ L
Sbjct: 167 AINALNGLRLQNKTIKVSIARPSS--ESIKGANLYVSGLPKNMTQS-------DLESLFS 217
Query: 203 TTGGDRNSVIFCENM 217
G S I C+N+
Sbjct: 218 PYGKIITSRILCDNI 232
Score = 33.9 bits (76), Expect = 0.28
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAI 144
G+ +FV L L +F P G V V+ D + K +GFG V M E+ AI
Sbjct: 360 GWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAI 419
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGAD 175
+ G RVL + + AA A+
Sbjct: 420 QSLNGYTLGNRVLQLAAVVNANAAAAALAAN 450
>SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 422
Score = 40.4 bits (93), Expect = 0.003
Identities = 20/75 (26%), Positives = 36/75 (47%), Gaps = 1/75 (1%)
Query: 211 VIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADICISK 269
V++ N+P E + D+F PV +L+++PE G +C++ P A +
Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 270 LDKYSYGDHELKVTY 284
L+ Y G L+V +
Sbjct: 66 LNNYDAGTRRLRVDF 80
>Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 362
Score = 40.4 bits (93), Expect = 0.003
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 30/147 (20%)
Query: 1 MKEYFGKIGEVRRA----DIITSRGHHRGMGTVEFNNSTDVDTAI----RDCDGAFLNGR 52
++EYFG+ GEV+ D +T R RG G V F + VD + + D ++ +
Sbjct: 36 LREYFGQFGEVKECLVMRDPLTKRS--RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93
Query: 53 AIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
F R+ P ++RT ++FV L + +++K F+ G
Sbjct: 94 VAFPRR--AQPKMVTRTK-----------------KIFVGGLSVNTTVEDVKQYFEQFGK 134
Query: 113 VLHADVVTDR-DGKSRGFGTVYMATKE 138
V A ++ D+ + RGFG V +++
Sbjct: 135 VDDAMLMFDKTTNRHRGFGFVTFESED 161
>At4g02430 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 294
Score = 40.4 bits (93), Expect = 0.003
Identities = 24/76 (31%), Positives = 36/76 (46%), Gaps = 6/76 (7%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLL--NPEGHFTRNSYCQFETPEDADICISK 269
I+ N+P E ++ DLF PV+ L + P G+ ++ +FE DAD I
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGY----AFVEFEDARDADDAIYG 64
Query: 270 LDKYSYGDHELKVTYA 285
D Y + H L+V A
Sbjct: 65 RDGYDFDGHHLRVELA 80
Score = 40.4 bits (93), Expect = 0.003
Identities = 41/159 (25%), Positives = 63/159 (38%), Gaps = 18/159 (11%)
Query: 1 MKEYFGKIGEVRRADI-ITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQD 59
+++ F K G V + D+ I R G VEF ++ D D AI DG +G + V
Sbjct: 23 VEDLFSKYGPVVQIDLKIPPRPP--GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
Query: 60 NPPPAEISRTXXXXXXXXXXKRAHDEG------------FEVFVAQLPFSVNWQELKDMF 107
+ R +G + V V+ LP S +WQ+LKD
Sbjct: 81 HGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHM 140
Query: 108 KPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRH 146
+ G+V + V D G + G V + E A+R+
Sbjct: 141 RKGGEVCFSQVFRDGRGTT---GIVDYTSYEDMKYAVRY 176
Score = 29.6 bits (65), Expect = 5.2
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
++V LP + +E++D+F G V+ D+ + G+ V +DAI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKI--PPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 149 GTEYKGRVLDVKEGKG 164
G ++ G L V+ G
Sbjct: 67 GYDFDGHHLRVELAHG 82
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 1 MKEYFGKIGEVRRADIITSR---GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR 57
++ +F + GEV D+ S G +G G +EF + + A+ + +G L GR + +
Sbjct: 400 IENFFKEAGEV--VDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLD 456
Query: 58 QDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHAD 117
N + + + GF + + +EL+ F CG+V
Sbjct: 457 LANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIK---KELRSHFSKCGEVTRVH 513
Query: 118 VVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGK-------GTSTRT 169
V TDR+ G SRGF + + + D +G+E G + V+E + +S R
Sbjct: 514 VPTDRETGASRGFAYIDLTS---GFDEALQLSGSEIGGGNIHVEESRPRDSDEGRSSNRA 570
Query: 170 AATGA 174
A GA
Sbjct: 571 PARGA 575
Score = 33.5 bits (75), Expect = 0.36
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+F L + + ++++ FK G+V+ + + DG +G+G + A+ E+ A+
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMN 444
Query: 149 GTEYKGR--VLDVKEGKGT 165
G GR LD+ +GT
Sbjct: 445 GKLLLGRDVRLDLANERGT 463
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/78 (24%), Positives = 32/78 (40%), Gaps = 2/78 (2%)
Query: 199 PLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFE 258
P T GG + +F N+ SD+ + F V+ +L +G F + +F
Sbjct: 375 PTNQTQGGSKT--LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFA 432
Query: 259 TPEDADICISKLDKYSYG 276
+PE+A + K G
Sbjct: 433 SPEEAQKALEMNGKLLLG 450
>At1g16610 [R] KOG0118 FOG: RRM domain
Length = 414
Score = 40.4 bits (93), Expect = 0.003
Identities = 36/139 (25%), Positives = 54/139 (37%), Gaps = 23/139 (16%)
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
R PPP++ K+A E + V L +VN LK++F G+V+H
Sbjct: 76 RSPPPPPSK--------GASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHV 127
Query: 117 DVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGAD 175
++ DR RG G V + A + G + G+V+ K T T
Sbjct: 128 EIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVV-----KATFTLP------ 176
Query: 176 TYIPRQPRNEPPATLKPKP 194
PRQ + PP + P
Sbjct: 177 ---PRQKVSSPPKPVSAAP 192
Score = 39.7 bits (91), Expect = 0.005
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Query: 1 MKEYFGKIGEVRRADIITSRGHH--RGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+KE FG GEV +I R + RG G VEF D + A DGA ++G+ +
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 59 DNPPPAEIS 67
PP ++S
Sbjct: 174 TLPPRQKVS 182
>7299058 [R] KOG0118 FOG: RRM domain
Length = 91
Score = 40.4 bits (93), Expect = 0.003
Identities = 26/75 (34%), Positives = 42/75 (55%), Gaps = 2/75 (2%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIR 145
+++FV LP+++ +EL+ F G V +A+VV DR G S+ +G V + ++ N A
Sbjct: 10 YKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRDAFNSASN 69
Query: 146 HWTGTEYKGRVLDVK 160
T GRVL V+
Sbjct: 70 QNTHF-LDGRVLTVQ 83
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 40.4 bits (93), Expect = 0.003
Identities = 23/83 (27%), Positives = 42/83 (49%), Gaps = 3/83 (3%)
Query: 207 DRNSV--IFCENMPSSTTESDLYDLFGSVAPVIITKLLLN-PEGHFTRNSYCQFETPEDA 263
DR S + +P T+ +LY+LF P+ K++ + G+ + ++T D+
Sbjct: 88 DRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDS 147
Query: 264 DICISKLDKYSYGDHELKVTYAR 286
+ I KL+ + + LKV+YAR
Sbjct: 148 EDAIQKLNGFYVRNKRLKVSYAR 170
Score = 33.1 bits (74), Expect = 0.47
Identities = 20/72 (27%), Positives = 35/72 (47%), Gaps = 1/72 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAIRHW 147
+ + LP + +EL ++F CG + ++ D + G S G+G V T+ DAI+
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 148 TGTEYKGRVLDV 159
G + + L V
Sbjct: 155 NGFYVRNKRLKV 166
>At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 40.0 bits (92), Expect = 0.004
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAI---RDCDGAFLNGRAIF 55
+++YF GEV A I+ R G RG G V F + + + DG + +
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAV 81
Query: 56 VRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLH 115
R D+ + + + K+ +FV L SV E K F G +
Sbjct: 82 PRDDHVVFNKSNSSLQGSPGPSNSKK-------IFVGGLASSVTEAEFKKYFAQFGMITD 134
Query: 116 ADVVTD-RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
V+ D R + RGFG + E+ D + T E G++++VK
Sbjct: 135 VVVMYDHRTQRPRGFGFI-SYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 36.6 bits (83), Expect = 0.043
Identities = 35/158 (22%), Positives = 65/158 (40%), Gaps = 28/158 (17%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDA 143
E ++F+ + + + L+D F G+VL A ++ DR G++RGFG V A
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 144 IRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAIT 203
+ + + +GK + A D + N+ ++L+ P
Sbjct: 64 V----------LLKHIIDGKIVEAKKAVPRDDHVV----FNKSNSSLQGSP--------- 100
Query: 204 TGGDRNSVIFCENMPSSTTESDL---YDLFGSVAPVII 238
G + IF + SS TE++ + FG + V++
Sbjct: 101 -GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVV 137
>At2g14550 [A] KOG0131 Splicing factor 3b subunit 4
Length = 314
Score = 40.0 bits (92), Expect = 0.004
Identities = 38/136 (27%), Positives = 58/136 (41%), Gaps = 20/136 (14%)
Query: 27 GTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEG 86
G V+F+N D D AI+ + L G I V++ K++ D G
Sbjct: 41 GFVQFHNEEDADYAIKVFNMIKLYGEPIRVKK-----------------ASQDKKSLDVG 83
Query: 87 FEVFVAQL-PFSVNWQELKDMFKPCGDVL-HADVVTDRD-GKSRGFGTVYMATKEQQNDA 143
+F+ L P +V+ + L D F G + H ++ D D G RGFG + + E + A
Sbjct: 84 ANLFLGNLDPVNVDEKMLHDTFSAFGVISDHPKIMRDPDTGNPRGFGFISYDSFEASDAA 143
Query: 144 IRHWTGTEYKGRVLDV 159
I TG R + V
Sbjct: 144 IEAMTGQYLSNRQITV 159
>Hs4504447 [R] KOG0118 FOG: RRM domain
Length = 341
Score = 39.7 bits (91), Expect = 0.005
Identities = 30/114 (26%), Positives = 48/114 (41%), Gaps = 22/114 (19%)
Query: 24 RGMGTVEFNNSTDVDTAI----RDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXX 79
RG G V F++ +VD A+ DG + + R+++ P
Sbjct: 50 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG--------------- 94
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTV 132
AH ++FV + L+D F+ G + +++TDR GK RGFG V
Sbjct: 95 --AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 146
Score = 30.8 bits (68), Expect = 2.3
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAI 41
+++YF + G++ +IIT R G RG G V F++ VD +
Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>Hs14043072 [R] KOG0118 FOG: RRM domain
Length = 353
Score = 39.7 bits (91), Expect = 0.005
Identities = 30/114 (26%), Positives = 48/114 (41%), Gaps = 22/114 (19%)
Query: 24 RGMGTVEFNNSTDVDTAI----RDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXX 79
RG G V F++ +VD A+ DG + + R+++ P
Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG--------------- 106
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTV 132
AH ++FV + L+D F+ G + +++TDR GK RGFG V
Sbjct: 107 --AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 158
Score = 30.8 bits (68), Expect = 2.3
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAI 41
+++YF + G++ +IIT R G RG G V F++ VD +
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>At2g37510 [R] KOG0118 FOG: RRM domain
Length = 142
Score = 39.7 bits (91), Expect = 0.005
Identities = 35/113 (30%), Positives = 49/113 (42%), Gaps = 25/113 (22%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
+FV+ L ++L+D F G ++ A V+TDRD G+S+GFG V AT E A
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPL 200
G V+ V D PR+PR +PL +PL
Sbjct: 96 NAKFLDGWVIFV---------------DPARPREPR---------RPLQQEPL 124
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+++ F G++ A +IT R G +G G V + D + A + + FL+G IFV
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109
Query: 59 DNP 61
P
Sbjct: 110 ARP 112
>At1g02840 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 283
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 14/136 (10%)
Query: 29 VEFNNSTDVDTAIRDCDGAFLNGRAIFVR--QDNPPPAEISRTXXXXXXXXXXKRAHDEG 86
++F+++ D + AI DG +G + V ++ +R + D G
Sbjct: 67 LDFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGG 126
Query: 87 ---------FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATK 137
F V V LP S +WQ+LKD + GDV + V D G + G V
Sbjct: 127 SRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTT---GVVDYTCY 183
Query: 138 EQQNDAIRHWTGTEYK 153
E A++ TE++
Sbjct: 184 EDMKYALKKLDDTEFR 199
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/89 (24%), Positives = 34/89 (37%), Gaps = 15/89 (16%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLL--NPEGH-------------FTRNSYCQ 256
++ N+P E ++ DLF PV+ L + P G+ T
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEVSLPPLILAVTCVMILD 68
Query: 257 FETPEDADICISKLDKYSYGDHELKVTYA 285
F+ DA+ I D Y + H L+V A
Sbjct: 69 FDDARDAEDAIHGRDGYDFDGHRLRVELA 97
>7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 421
Score = 39.7 bits (91), Expect = 0.005
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQND 142
DE ++FV L + + L F GD++ V+ + + G+SRGFG V A N
Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH 63
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAI 202
+++ T GR +D K P PR KPK
Sbjct: 64 VLQNGPHT-LDGRTIDPK------------------PCNPR----TLQKPK--------- 91
Query: 203 TTGGDRNSVIFCENMPSSTTESDL---YDLFGSVAPVII 238
GG + +F +PS+ TE+DL ++ +G V V+I
Sbjct: 92 KGGGYK---VFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
>At3g48830_2 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 307
Score = 39.7 bits (91), Expect = 0.005
Identities = 38/192 (19%), Positives = 79/192 (40%), Gaps = 19/192 (9%)
Query: 102 ELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKE 161
++ D FK G V+ + T R+G G V A+ + A+ G G L +
Sbjct: 5 DIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLCGNKLIL-- 62
Query: 162 GKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSST 221
G + A + YI ++ +L + + P + +G + + C ++
Sbjct: 63 GMASCENIAQPKYEDYIQQE-------SLPIEEEETPPKIVQSGAN---TLGCSIQAAAF 112
Query: 222 TESDLY-------DLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYS 274
+ +D+ D F V V+ +L+++PE + +F +P A++ + K +
Sbjct: 113 SMTDILSFHFYRLDFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEY 172
Query: 275 YGDHELKVTYAR 286
DH++ + A+
Sbjct: 173 LHDHKIFLGVAK 184
Score = 36.2 bits (82), Expect = 0.056
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 3 EYFGKIGEVRRADIITS-RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIF--VRQD 59
++F +GEV +I S H G G VEF + + A+ +G +L+ IF V +
Sbjct: 126 DFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT 185
Query: 60 NPPPAEISRTXX------XXXXXXXXKRAHDEGFE------------------VFVAQLP 95
P P I DE E + +A +P
Sbjct: 186 APYPPRIKYNLAEKLWYEDYLLRDSLLIEEDETVEGLDETPSCVEAVALREKVLIIAHVP 245
Query: 96 FSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQ 139
+ D FK G V++ ++ D+ GK G G V + ++
Sbjct: 246 RRTKISHIIDFFKDAGQVVNVRLIVDQKGKPFGRGFVEFTSADE 289
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 39.3 bits (90), Expect = 0.007
Identities = 46/213 (21%), Positives = 90/213 (41%), Gaps = 24/213 (11%)
Query: 86 GFEVFVAQLPFS---VNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQND 142
G VF + LP + + + D F G +L + + +D G VY ++ +
Sbjct: 178 GTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSRKD-----IGFVYFEDEKTARN 232
Query: 143 AIRHWTGTEYKGRVL--------DVKEGKGTSTRTAATGADTYIPR-QPRNEPPATLKPK 193
I+ + T + G+ + +V+ T+ + A+T I + Q NE + K
Sbjct: 233 VIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQKSRLDAETIIEKEQSLNEKHS----K 288
Query: 194 PLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNS 253
D + I + + IF +N+P+ TT D+ + F V P I + L N +
Sbjct: 289 GNDKESKNIYSSSQNS--IFIKNLPTITTRDDILNFFSEVGP-IKSIYLSNATKVKYLWA 345
Query: 254 YCQFETPEDADICISKLDKYSYGDHELKVTYAR 286
+ ++ D++ I + + + + +L VT A+
Sbjct: 346 FVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQ 378
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
+F+ L +V + LK +FK + A V D KS G G + KE+ A+
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLK 191
T+ G+ + + +T G + + P N P T +
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTR 196
>SPAC22E12.02 [R] KOG0226 RNA-binding proteins
Length = 219
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRH 146
F +FV L VN + L F ++ VV DR+GK+RGFG V +Q A R
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 147 WTGTEYKGRVLDVKEGKGTS 166
G R VK + TS
Sbjct: 90 KNGKYIGSR--PVKLSRATS 107
>Hs17433768 [R] KOG0118 FOG: RRM domain
Length = 238
Score = 39.3 bits (90), Expect = 0.007
Identities = 30/114 (26%), Positives = 47/114 (40%), Gaps = 22/114 (19%)
Query: 24 RGMGTVEFNNSTDVDTAIR----DCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXX 79
RG G V + +VD A+ + DG + + R+D+ P
Sbjct: 10 RGFGFVTYTTVEEVDAAMNARPHEVDGRVVEPKRAVSREDSQRPG--------------- 54
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTV 132
AH ++FV + L+D F+ CG + +++TDR GK RGF V
Sbjct: 55 --AHLTVKKIFVGGIKEDTEEHHLRDYFELCGKMELIEIITDRGSGKKRGFAFV 106
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 39.3 bits (90), Expect = 0.007
Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 4/106 (3%)
Query: 50 NGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKP 109
NG + VR+ + P + + ++F+ L +SV+ Q LKD F
Sbjct: 4 NGIELLVRRVSAIPQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSS 63
Query: 110 CGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKG 154
G+V + D+ G+SRGFG V A ++ DA+ + KG
Sbjct: 64 FGEVAEVRIAYDKGSGRSRGFGFVDFA---EEGDALSAKDAMDGKG 106
Score = 28.9 bits (63), Expect = 8.9
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 2/56 (3%)
Query: 1 MKEYFGKIGEVRRADIITSRG--HHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAI 54
+K+ F GEV I +G RG G V+F D +A DG L GR +
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPL 112
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 39.3 bits (90), Expect = 0.007
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
++FV + +S + L++ F G+V+ A ++ DR+ G+SRGF V + E+ ++A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 147 WTGTEYKGRVLDV 159
G + GR + V
Sbjct: 94 LDGQDLHGRRIRV 106
Score = 34.3 bits (77), Expect = 0.21
Identities = 23/58 (39%), Positives = 31/58 (52%), Gaps = 3/58 (5%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++E F K GEV A II R G RG V F ++ + A++ DG L+GR I V
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRV 106
>7294907 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 918
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHR-------GMGTVEFNNSTDVDTAIRDCDGAFLNGRA 53
++++F +G + +I R G G ++F S+ + A+++ ++G
Sbjct: 695 VEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNP 754
Query: 54 IFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDV 113
+ +++ + + + G ++ V +PF ++E++D+FK G++
Sbjct: 755 VELKRSD---RVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGEL 811
Query: 114 LHADV---VTDRDGKSRGFGTV-YMATKE 138
+ T + RGFG V YM+ E
Sbjct: 812 RSLRIPKKATTGEDAHRGFGFVDYMSKAE 840
Score = 38.5 bits (88), Expect = 0.011
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 85 EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDA 143
E +F L ++ ++L+ +F+ G V+ ++ D+ K +GFGTV E A
Sbjct: 362 ESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKA 421
Query: 144 IRHWTGTEYKGRVLDVKEGK 163
GT++ GR+L + K
Sbjct: 422 FNTLDGTDFHGRLLHLLPSK 441
Score = 36.6 bits (83), Expect = 0.043
Identities = 20/62 (32%), Positives = 31/62 (49%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ V QLP + +L+ +F G + + DGK R F V +T+E+ AIRH+
Sbjct: 4 IIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHFD 63
Query: 149 GT 150
T
Sbjct: 64 NT 65
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/133 (23%), Positives = 56/133 (41%), Gaps = 10/133 (7%)
Query: 153 KGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVI 212
K R+LD +G ++ A G + R L+ + + +D N+VI
Sbjct: 500 KERILDTSDGGSSAAVRLALGETQVVIEMKR-----FLEEEGVRLDAFDEPAKKRSNTVI 554
Query: 213 FCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDK 272
+N+P++T S++ +F P I +++L P G YC P +A KL
Sbjct: 555 LAKNLPAATEISEITPIFSRFGP--IGRIVLPPSGVTALIEYCD---PLEARQAFKKLAY 609
Query: 273 YSYGDHELKVTYA 285
+ + L + +A
Sbjct: 610 SKFKNAPLYLEWA 622
Score = 33.5 bits (75), Expect = 0.36
Identities = 17/62 (27%), Positives = 28/62 (44%)
Query: 210 SVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISK 269
S I + +P TE L +FG+ + +L P+G F + + + T E+A I
Sbjct: 2 SRIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRH 61
Query: 270 LD 271
D
Sbjct: 62 FD 63
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 39.3 bits (90), Expect = 0.007
Identities = 36/158 (22%), Positives = 68/158 (42%), Gaps = 13/158 (8%)
Query: 5 FGKIGEVRRA-DIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV-RQDNPP 62
FG I + + D IT + H+G VE+ A+ +GA + GR I V R N P
Sbjct: 153 FGPIKSINMSWDPITQK--HKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMP 210
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR 122
A+ + ++VA + ++ +++K +F+ G +L+ +
Sbjct: 211 QAQ--------QVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGT 262
Query: 123 D-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
+G+G + A K+ ++AI + G++L V
Sbjct: 263 SLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 377
Score = 38.9 bits (89), Expect = 0.009
Identities = 19/56 (33%), Positives = 29/56 (50%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+++ FG+ G++ +II + +G G V F NS D D A G + GR I V
Sbjct: 113 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 168
Score = 35.0 bits (79), Expect = 0.12
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 1/69 (1%)
Query: 91 VAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGT 150
V+ +PF +L+ MF G +L +++ + G S+GFG V + A GT
Sbjct: 101 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGT 159
Query: 151 EYKGRVLDV 159
+GR ++V
Sbjct: 160 VVEGRKIEV 168
>Hs7657504 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 367
Score = 38.9 bits (89), Expect = 0.009
Identities = 19/56 (33%), Positives = 29/56 (50%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+++ FG+ G++ +II + +G G V F NS D D A G + GR I V
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 183
Score = 35.0 bits (79), Expect = 0.12
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 1/69 (1%)
Query: 91 VAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGT 150
V+ +PF +L+ MF G +L +++ + G S+GFG V + A GT
Sbjct: 116 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGT 174
Query: 151 EYKGRVLDV 159
+GR ++V
Sbjct: 175 VVEGRKIEV 183
>Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 272
Score = 38.9 bits (89), Expect = 0.009
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQND--AIR 145
+F+ LP+ + ++ +F G++++ ++V D + GKS+GF ++ ++Q++ A+
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGF--CFLCYEDQRSTILAVD 95
Query: 146 HWTGTEYKGRVLDV------KEGKGTSTRTAAT--------GADTYIPRQPRNEPPATLK 191
++ G + KGR + V + K + AT G TY +QP + P +
Sbjct: 96 NFNGIKIKGRTIRVDHVSNYRAPKNSEEMDDATKELQKGSCGPHTYSSKQPSSSSPTSKT 155
Query: 192 PKPLDIDP 199
K D DP
Sbjct: 156 VKEKD-DP 162
>Hs17572810 [A] KOG0533 RRM motif-containing protein
Length = 255
Score = 38.9 bits (89), Expect = 0.009
Identities = 20/77 (25%), Positives = 40/77 (50%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ G ++ V+ L F V+ +++++F G + A V DR G+S G V+ K A
Sbjct: 101 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTANVHFERKADALKA 160
Query: 144 IRHWTGTEYKGRVLDVK 160
++ + G GR ++++
Sbjct: 161 MKQYNGFPLDGRPMNIQ 177
>CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 305
Score = 38.9 bits (89), Expect = 0.009
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 46/204 (22%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQND 142
+E ++FV + VN ++L F G+V A V DR +G+SRGF V T
Sbjct: 26 NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT------ 79
Query: 143 AIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAI 202
G+G AA T+K K +++ P
Sbjct: 80 -------------------GEGCKLALAAR--------------EQTIKGKSVEVKP--- 103
Query: 203 TTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRN-SYCQFETPE 261
N +F +PS +E DL F V + + + RN ++ FE E
Sbjct: 104 -AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEE 162
Query: 262 DADICISKLDKYSYGDHELKVTYA 285
AD S+ K ++G E V A
Sbjct: 163 SADKASSQ-TKQTFGTRECDVKKA 185
Score = 33.5 bits (75), Expect = 0.36
Identities = 40/163 (24%), Positives = 66/163 (39%), Gaps = 25/163 (15%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+ +F + GEV +A + R G RG VEF A+ + + G+++ V+
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQT-IKGKSVEVK- 102
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
PA+ SR E +VFV LP + Q+L+ F+ G V +
Sbjct: 103 ----PAK-SR----------------ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEW 141
Query: 119 VTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKE 161
D+ K+R + +E+ D T + R DVK+
Sbjct: 142 PFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKK 184
>CE05167 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 836
Score = 38.9 bits (89), Expect = 0.009
Identities = 44/196 (22%), Positives = 66/196 (33%), Gaps = 12/196 (6%)
Query: 8 IGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEIS 67
+ +R A S HRG V N A+ D + GR +F+ ++P
Sbjct: 616 VASIRFARKANSDLVHRGFAYVVMENDQKAQQALLK-DRVPVKGRPMFISANDPEKRVGF 674
Query: 68 RTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSR 127
+ E +VFV + F ELK +F G V VT +DGK +
Sbjct: 675 KFSTTL-----------EKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPK 723
Query: 128 GFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPP 187
G V T+ + + R L+V + + G I + P
Sbjct: 724 GIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGP 783
Query: 188 ATLKPKPLDIDPLAIT 203
L + P AIT
Sbjct: 784 RKGHAAKLQLVPRAIT 799
Score = 33.1 bits (74), Expect = 0.47
Identities = 18/73 (24%), Positives = 33/73 (44%)
Query: 210 SVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISK 269
S +F N+ T+ +L LF V + + + +G ++ F+T A C++
Sbjct: 683 SKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVAS 742
Query: 270 LDKYSYGDHELKV 282
DK + EL+V
Sbjct: 743 GDKLMLRERELEV 755
>CE01058 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 404
Score = 38.9 bits (89), Expect = 0.009
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 91 VAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGT 150
V+ +PF +L MF+ G V+ +++ + G S+GFG V M + + A + GT
Sbjct: 104 VSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG-SKGFGFVTMQNPDDADRARAEFNGT 162
Query: 151 EYKGRVLDV 159
+GR ++V
Sbjct: 163 TIEGRRVEV 171
Score = 38.5 bits (88), Expect = 0.011
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 179 PRQPRNEPPATLKP-KPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSVAPVI 237
P Q + + P T+ P P D + +T G R + N+P E DL +F V PV+
Sbjct: 70 PTQQKQQQPLTIGPVAPNDRSTSSSSTDGPRR--LHVSNIPFKYREPDLTAMFEKVGPVV 127
Query: 238 ITKLLLNPEGHFTRNSYCQFETPEDAD 264
+++ N G + + P+DAD
Sbjct: 128 DVEIIFNERGS-KGFGFVTMQNPDDAD 153
Score = 32.0 bits (71), Expect = 1.0
Identities = 17/52 (32%), Positives = 25/52 (47%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
F K+G V +II + +G G V N D D A + +G + GR + V
Sbjct: 120 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>At2g21690 [R] KOG0118 FOG: RRM domain
Length = 117
Score = 38.9 bits (89), Expect = 0.009
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIR 145
+ FV L + ++L D+F G+V+ + ++ DRD GKSR FG V ++ DAI
Sbjct: 7 YTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Query: 146 HWTGTEYKGRVLDV 159
E + + ++V
Sbjct: 67 IMDVEESRSKCVNV 80
>At1g07350 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment
factor (SAF-B)
Length = 385
Score = 38.9 bits (89), Expect = 0.009
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 66 ISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCG---DVLHADVVTDR 122
+SR+ A + G ++V L V ++L+D F G DV +V D
Sbjct: 54 VSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVVDVTDVHLVLDP 113
Query: 123 -DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATG 173
+SRGFG + M + N IR + +GRV+ V++ + RT G
Sbjct: 114 WTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPG 165
>YNL175c [K] KOG4210 Nuclear localization sequence binding protein
Length = 403
Score = 38.5 bits (88), Expect = 0.011
Identities = 23/81 (28%), Positives = 40/81 (48%), Gaps = 1/81 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
+FV L F V L+ F+ CGD++ + T D GK +GF + +E + ++
Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300
Query: 148 TGTEYKGRVLDVKEGKGTSTR 168
+ + GR L ++ G+ S R
Sbjct: 301 SCRKIAGRPLRMEYGEDRSKR 321
>SPAC3G6.04 [K] KOG4210 Nuclear localization sequence binding protein
Length = 369
Score = 38.5 bits (88), Expect = 0.011
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 20 RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXX 79
R ++G V+F + A++ C LNGR I ++ + S+
Sbjct: 161 RFQNKGFAYVDFATEDALKLALQ-CSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASI 219
Query: 80 KRAHDEGFEV-FVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTV 132
+ + E + FV L F +LK+ F G + ++T D GK +GFG V
Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
Score = 34.3 bits (77), Expect = 0.21
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 1 MKEYFGKIGEVRRADIIT--SRGHHRGMGTVEFNNSTDVDTAIR 42
+KE+FG++G++RR ++T G +G G V+F D+DT ++
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTCMK 284
Score = 30.4 bits (67), Expect = 3.0
Identities = 37/177 (20%), Positives = 70/177 (38%), Gaps = 34/177 (19%)
Query: 114 LHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATG 173
+H + ++ +++GF V AT++ A++ + GR + +K S R
Sbjct: 152 IHMPMSKEKRFQNKGFAYVDFATEDALKLALQ-CSEKALNGRNILIKSNTDFSGR----- 205
Query: 174 ADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGSV 233
P +P N T + +P +S++F N+ TT++DL + FG V
Sbjct: 206 -----PSKPANTLSKTASIQSSKKEP---------SSILFVGNLDFETTDADLKEHFGQV 251
Query: 234 APVIITKLLLNPEGHFTRNSYCQ---FETPEDADICISKLD------KYSYGDHELK 281
+ +L+ F C+ F D D C+ ++ + YG+ K
Sbjct: 252 GQIRRVRLMT-----FEDTGKCKGFGFVDFPDIDTCMKAMELGHNSWRLEYGEDRSK 303
>Hs22058383 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 476
Score = 38.5 bits (88), Expect = 0.011
Identities = 19/60 (31%), Positives = 29/60 (47%)
Query: 101 QELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
+ LK++F G L+ V+T GKS+GFG V E A+ G ++K + K
Sbjct: 120 ERLKNLFGKFGPALNVKVMTGESGKSKGFGFVSFERLEDAQKAVDEMKGAQWKTNLCSAK 179
>Hs21450675 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 533
Score = 38.5 bits (88), Expect = 0.011
Identities = 20/60 (33%), Positives = 33/60 (54%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIR 145
G EVFV ++P + EL +F+ G + ++ + G++RG+ V TKE+ AIR
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIR 119
>CE13934 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 248
Score = 38.5 bits (88), Expect = 0.011
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIR 145
++FV LP+ + + L + F+ GD+ A V+TDR+ KSRG+G V M + A +
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACK 94
>At5g54580 [R] KOG0118 FOG: RRM domain
Length = 156
Score = 38.5 bits (88), Expect = 0.011
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++ F + GEV A ++T R G+ +G G V + D I DG FL+G IF
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
Query: 59 DNP 61
P
Sbjct: 132 ARP 134
Score = 37.0 bits (84), Expect = 0.033
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
+FV+ L + L+ F G+V A VVTDR G S+GFG V AT E I
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPP 187
G G V+ + + + +Y P+ + PP
Sbjct: 118 DGKFLDGWVIFAEYARPREQ------SQSYQPQNNMSRPP 151
>At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 169
Score = 38.5 bits (88), Expect = 0.011
Identities = 28/104 (26%), Positives = 49/104 (46%), Gaps = 14/104 (13%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
+++V LP++ + L + FK G+++H +VV DR+ +S+G+G V E A +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 147 WTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATL 190
T EG+ T+ + A GA +P P+ L
Sbjct: 74 PNPT---------IEGRITNCKLAFVGAKV----KPNQSQPSNL 104
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 38.5 bits (88), Expect = 0.011
Identities = 36/170 (21%), Positives = 68/170 (39%), Gaps = 8/170 (4%)
Query: 11 VRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISR 68
V+ A ++ R G +G G V F++ ++ A+ + +G + R + + +
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 69 TXXXXXXXXXXKRAHD-EGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSR 127
+D VFV L SV LK++F G+++H + GK
Sbjct: 242 RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA---GKRC 298
Query: 128 GFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTY 177
GF V + K +A+R G + G + + G+ S + + + Y
Sbjct: 299 GF--VQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQFY 346
>Hs5031693 [R] KOG0118 FOG: RRM domain
Length = 269
Score = 38.1 bits (87), Expect = 0.015
Identities = 37/141 (26%), Positives = 58/141 (40%), Gaps = 28/141 (19%)
Query: 1 MKEYFGKIGEVRRADIITSRG----HHRGMGTVEFNNSTDVDTAIR----DCDGAFLNGR 52
++E+F K G + D + R RG G V ++ T+VD AI DG + +
Sbjct: 51 LREHFEKWGTL--TDCLVMRDPQTKRSRGFGFVTYSCVTEVDAAIGARPFKVDGRVVEPK 108
Query: 53 AIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
R+D+ P AH ++FV + L+D F+ G
Sbjct: 109 RAVSREDSVKPG-----------------AHLTVKKIFVGSIKEDTEEYNLRDYFEKYGK 151
Query: 113 VLHADVVTDR-DGKSRGFGTV 132
+ +V+ DR GK RGF +V
Sbjct: 152 IETIEVMEDRQSGKKRGFASV 172
>Hs4504161 [A] KOG4211 Splicing factor hnRNP-F and related RNA-binding
proteins
Length = 424
Score = 38.1 bits (87), Expect = 0.015
Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 39/217 (17%)
Query: 58 QDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCG-----D 112
+D PPP E + D+ F + LP+S +++ + F C +
Sbjct: 71 EDLPPPPEYE------LAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN 124
Query: 113 VLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAAT 172
+H + +RDGK RG + M +++ A+ Y G+
Sbjct: 125 GIH--FLLNRDGKRRGDALIEMESEQDVQKALEKHR--MYMGQ----------------- 163
Query: 173 GADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGS 232
Y+ N K L + + G V+ +P S E D+ D F
Sbjct: 164 ---RYVEVYEINNEDVDALMKSLQVKSSPVVNDG----VVRLRGLPYSCNEKDIVDFFAG 216
Query: 233 VAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISK 269
+ V IT ++ T +Y QFE PE A+ + K
Sbjct: 217 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 253
>CE28597 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 206
Score = 38.1 bits (87), Expect = 0.015
Identities = 46/192 (23%), Positives = 81/192 (41%), Gaps = 18/192 (9%)
Query: 101 QELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
+ L +FK G+++ V+ R K RG V + A G + + + ++
Sbjct: 26 KSLVAVFKQFGEIV--SVMCFRTLKMRGQAHVIFKELPAASAAREALNGFPFYEKPMRIQ 83
Query: 161 EGKGTSTRTAATGADTYIPRQPRNEPPATLK-PKPLDIDPLAITTGGDR----NSVIFCE 215
+ S A TYI R+P+ LK PK + GGD N ++FC
Sbjct: 84 FAREDSD-VVAQEKGTYIKREPKYLSEKILKKPKSRKKE-----NGGDGPAPPNKILFCT 137
Query: 216 NMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSY 275
N+P S T L +F A + +++ N G ++ +F+T A + L+ +
Sbjct: 138 NLPDSATAEMLEIMFNQFAGLKDIRMVPNRPG----IAFVEFDTDSLAIPARTTLNNFKI 193
Query: 276 -GDHELKVTYAR 286
+H ++V YA+
Sbjct: 194 SAEHTMRVDYAK 205
>CE26020 [A] KOG4211 Splicing factor hnRNP-F and related RNA-binding
proteins
Length = 549
Score = 38.1 bits (87), Expect = 0.015
Identities = 52/194 (26%), Positives = 82/194 (41%), Gaps = 34/194 (17%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRH 146
+EV LP+ QEL+D F G + + + R+G++ G V +E N+A++
Sbjct: 5 YEVQCRGLPWEATEQELRDFFGNNG--IESLEIPRRNGRTSGDAKVVFTNEEDYNNALK- 61
Query: 147 WTGTEYKG-RVLDVKEGKGTSTRTAATG-------ADTYIPRQPRNEPPATLKPKPLDID 198
E+ G R ++V G TR G D Y + R PP + + D
Sbjct: 62 -KDREHLGSRYIEVFPAGGAPTRRGDRGERGDRGDRDHY---RSRGAPP---RDRYSD-- 112
Query: 199 PLAITTGGDR----NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTR--- 251
GG R +S++ +P S T D+ D F + P++ +LL P+ R
Sbjct: 113 -----RGGPRSSGPDSIVRLRGLPFSVTSRDISD-FLAPLPIVRDGILL-PDQQRARPGG 165
Query: 252 NSYCQFETPEDADI 265
+Y FET E I
Sbjct: 166 EAYVCFETMESVQI 179
>At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 674
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAIRHW 147
+FVA + F L F G+VL A +VTD G+ G + KE +A+
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL-SL 576
Query: 148 TGTEYKGRVLDVKEGKGTSTRTAAT 172
GT + R+L + +G + AA+
Sbjct: 577 DGTSFMSRILKIVKGSNGQNQEAAS 601
>At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 453
Score = 38.1 bits (87), Expect = 0.015
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAI 144
G +F+ +P QEL F+P G VL A V D+ G S+ FG + ++ +AI
Sbjct: 353 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 412
Query: 145 RHWTGTEYKGRVLDVK 160
G + G+ L V+
Sbjct: 413 NTMNGCQLSGKKLKVQ 428
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 38.1 bits (87), Expect = 0.015
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 24/196 (12%)
Query: 86 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQNDAI 144
G EVF ++P + EL +F+ CG + ++ D G +RG+ V +E +A+
Sbjct: 163 GCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAV 222
Query: 145 RHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITT 204
R E +K GK + ++ P++ K K ++ T
Sbjct: 223 RQLDNHE-------IKPGKCLKINISVPNLRLFVGNIPKS------KGKDEILEEFGKLT 269
Query: 205 G-------GDRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLL-NPEGHFTRNSYC- 255
G N +F N+P + +L + F AP + ++ +P+ +C
Sbjct: 270 GKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCF 329
Query: 256 -QFETPEDADICISKL 270
++E+ + A + +L
Sbjct: 330 LEYESHKAASLAKRRL 345
>7295256 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 352
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/86 (29%), Positives = 43/86 (49%), Gaps = 10/86 (11%)
Query: 87 FEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRH 146
F++F+ L EL+ +F+ G V+ DVV + +G V+M T++Q DAI++
Sbjct: 7 FKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQN 59
Query: 147 WTG---TEYKGRVLDVKEGKGTSTRT 169
G E+ +V K + +T T
Sbjct: 60 LNGYTLNEFAIKVEAAKSRRAPNTPT 85
Score = 34.3 bits (77), Expect = 0.21
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 30/160 (18%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++ F K G V D++ + G V AI++ +G LN AI V
Sbjct: 23 LRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAK 76
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
A + T ++FV L E++++F+ G V+ D+V
Sbjct: 77 SRRAPNTPTT-----------------KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV- 118
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
R +G V++ DAI+ G G+ L V+
Sbjct: 119 ------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQ 152
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 38.1 bits (87), Expect = 0.015
Identities = 50/219 (22%), Positives = 78/219 (34%), Gaps = 49/219 (22%)
Query: 23 HRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRA 82
H+G G VEF + D D I+ + L G+ I V + ++
Sbjct: 53 HQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNK-----------------ASAHQKN 95
Query: 83 HDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVV--TDRDGKSRGFGTVYMATKEQQ 140
D G +F+ L V+ + L D F G +L + GKS+ F + A+ E
Sbjct: 96 LDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEAS 155
Query: 141 NDAIRHWTGTEYKGRVLDV-----KEGKGTSTRTAA----------TGAD---------- 175
+ A+ G R + V K+ KG +AA T AD
Sbjct: 156 DAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLFADAP 215
Query: 176 --TYIPRQPRNEP---PATLKPKPLDIDPLAITTGGDRN 209
T +P+ P P P + P P+ P + + N
Sbjct: 216 VQTMMPQMPGQIPAQMPGQMMPPPMMAPPPPVVPVSNNN 254
>Hs6005725 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 358
Score = 37.7 bits (86), Expect = 0.019
Identities = 31/115 (26%), Positives = 47/115 (39%), Gaps = 3/115 (2%)
Query: 47 AFLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDM 106
AF A+ +Q PPP + + +R +G +F+ LP E+ M
Sbjct: 235 AFPQPPALVAQQPPPPPQQ--QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQM 292
Query: 107 FKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
F P G V+ A V DR +S+ FG V AI+ G + + L V+
Sbjct: 293 FVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 347
>Hs20357578 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 594
Score = 37.7 bits (86), Expect = 0.019
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ G E+F+ +LP + EL + + G + ++ D +G +RG+ V + K + +A
Sbjct: 61 ERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNA 120
Query: 144 IRHWTGTEYK-GRVLDV 159
I+ E + GR+L V
Sbjct: 121 IKQLNNYEIRNGRLLGV 137
>Hs20357575 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 594
Score = 37.7 bits (86), Expect = 0.019
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ G E+F+ +LP + EL + + G + ++ D +G +RG+ V + K + +A
Sbjct: 53 ERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNA 112
Query: 144 IRHWTGTEYK-GRVLDV 159
I+ E + GR+L V
Sbjct: 113 IKQLNNYEIRNGRLLGV 129
>Hs20357572 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 586
Score = 37.7 bits (86), Expect = 0.019
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDA 143
+ G E+F+ +LP + EL + + G + ++ D +G +RG+ V + K + +A
Sbjct: 53 ERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNA 112
Query: 144 IRHWTGTEYK-GRVLDV 159
I+ E + GR+L V
Sbjct: 113 IKQLNNYEIRNGRLLGV 129
>Hs17452185 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 511
Score = 37.7 bits (86), Expect = 0.019
Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 5/94 (5%)
Query: 48 FLNGRAIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMF 107
F G + +DN E + T KRA + + V LP+ Q+LK+ F
Sbjct: 333 FTKGSVLTFTKDNYRKREKTDTSLAIKV----KRAVQKTSALAVLGLPWKTTEQDLKEYF 388
Query: 108 KPCGDVLHADVVTD-RDGKSRGFGTVYMATKEQQ 140
G++L V D R G S+GFG V+ E Q
Sbjct: 389 STFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQ 422
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 37.7 bits (86), Expect = 0.019
Identities = 38/148 (25%), Positives = 60/148 (39%), Gaps = 15/148 (10%)
Query: 5 FGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP-- 62
F +IG V +A II G + VEF++ A++ +G L + + V P
Sbjct: 60 FNQIGAVMKAKIIFE-GLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPRE 118
Query: 63 PAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR 122
P E K F VFV L ++ +L++ F G+V A ++ D
Sbjct: 119 PGE-----------NRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDN 167
Query: 123 D-GKSRGFGTVYMATKEQQNDAIRHWTG 149
+ K +G+G V +E AI G
Sbjct: 168 NTNKGKGYGFVSYPRREDAERAIDEMNG 195
Score = 35.4 bits (80), Expect = 0.095
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 39/202 (19%)
Query: 1 MKEYFGKIGEVRRADII----TSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++E F K GEV A II T++G +G G V + D + AI + +GA+L R I
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKG--KGYGFVSYPRREDAERAIDEMNGAWLGRRTIRT 205
Query: 57 RQDNPPPAEISRT------------XXXXXXXXXXKRAHDEGF--------EVFVAQLPF 96
P E ++ +DE F V+V +
Sbjct: 206 NWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNIA- 264
Query: 97 SVNWQELK---DMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYK 153
++ E++ D F P +V R K +G+ V TKE AI +
Sbjct: 265 NLGEDEIRRAFDRFGPINEV--------RTFKIQGYAFVKFETKESAARAIVQMNNADIG 316
Query: 154 GRVLDVKEGK-GTSTRTAATGA 174
G+++ GK G S + + G+
Sbjct: 317 GQIVRCSWGKSGDSGKPSERGS 338
>CE16399 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 207
Score = 37.7 bits (86), Expect = 0.019
Identities = 26/87 (29%), Positives = 42/87 (47%), Gaps = 7/87 (8%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCG----DVLHADV--VTDRD-GKSRGFGTVYMAT 136
DE F+ F+ LP+ +++ + K C ++ D+ V DRD G +GF V
Sbjct: 3 DEIFKAFIGGLPYDSIATDIETILKHCKFTDEELKKFDIHLVHDRDSGSFKGFAYVTFEN 62
Query: 137 KEQQNDAIRHWTGTEYKGRVLDVKEGK 163
++Q N AI G ++ RVL V +
Sbjct: 63 EQQMNTAISGLNGADFGNRVLKVNRAQ 89
>At5g65260 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 220
Score = 37.7 bits (86), Expect = 0.019
Identities = 21/71 (29%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
VFV + ++ +E++ F+ CG V ++TD+ G+ +GF V E +A++
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 149 GTEYKGRVLDV 159
+E GR L V
Sbjct: 153 ESELHGRQLKV 163
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 37.7 bits (86), Expect = 0.019
Identities = 23/77 (29%), Positives = 37/77 (47%), Gaps = 1/77 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++++ L + LKD F V A V+T++ G+SRG+G V +++ N AI
Sbjct: 64 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 123
Query: 147 WTGTEYKGRVLDVKEGK 163
G E G + V K
Sbjct: 124 MNGQELNGFNISVNVAK 140
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+K+ F V A ++T++ G RG G V F + ++AI +G LNG I V
Sbjct: 79 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISV 136
>At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 521
Score = 37.7 bits (86), Expect = 0.019
Identities = 30/110 (27%), Positives = 44/110 (39%), Gaps = 17/110 (15%)
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCG------- 111
D PP+ I H G EVF+ LP V ++L+D+ + G
Sbjct: 90 DEKPPSPIDDEDREKYSHLLSLPPH--GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRT 147
Query: 112 -------DVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYK 153
D+L ++ DRD G S+G+ V TK+ AI E+K
Sbjct: 148 AIIFVFHDILFVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFK 197
Score = 33.5 bits (75), Expect = 0.36
Identities = 21/80 (26%), Positives = 40/80 (49%), Gaps = 1/80 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
++V +P + + ++LK++F+ G+V + GK R FG V+ A + A++
Sbjct: 320 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDTE 378
Query: 149 GTEYKGRVLDVKEGKGTSTR 168
E G+ L+V K + R
Sbjct: 379 RYEVNGQPLEVVLAKPQAER 398
>7291833 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1045
Score = 37.7 bits (86), Expect = 0.019
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQ 139
+R + + V + + L++ F G + ++ DGK G V T Q
Sbjct: 269 ERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQ 328
Query: 140 QNDAIRHWTGTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPK 193
AI + G E GR + V A G D Y+ + P++E P KPK
Sbjct: 329 ATKAILNSNGKELLGRKVFVDW---------ALGKDEYVSKNPKDEEPDEKKPK 373
Score = 32.3 bits (72), Expect = 0.80
Identities = 19/72 (26%), Positives = 36/72 (49%), Gaps = 5/72 (6%)
Query: 212 IFCENMPSSTTESDLYDL---FGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICIS 268
+F +N+P ++DL FG V+ II + ++ GH ++ +F+ E AD+C+
Sbjct: 460 VFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVS--GHSKGTAFVKFKAKESADLCLQ 517
Query: 269 KLDKYSYGDHEL 280
++ D L
Sbjct: 518 AGTEFKLMDEVL 529
>SPBC146.07 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 517
Score = 37.4 bits (85), Expect = 0.025
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 207 DRNSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLN-PEGHFTRNSYCQFETPEDADI 265
D I+ N+P + E + +L ++ +L+ N +G +C+F+ P DA++
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 266 CISKLD-KYSYGD 277
IS LD K +YG+
Sbjct: 367 AISGLDGKDTYGN 379
Score = 32.3 bits (72), Expect = 0.80
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 84 DEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGF 129
D +++++ LP ++ ++ ++ KP GD+L ++ + DG S+GF
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGF 353
>Hs4506445 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 366
Score = 37.4 bits (85), Expect = 0.025
Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++F+ LP QE++ +F+ G VL D++ + +G V++ K DAIR+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNL 55
Query: 148 TGTEYKGRVLDVKEGKGTS 166
+ G ++V+ K S
Sbjct: 56 HHYKLHGVNINVEASKNKS 74
Score = 34.3 bits (77), Expect = 0.21
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++ F + G+V DII + G V + T + AIR+ L+G I V
Sbjct: 18 IRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE--- 68
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
K ++ V + + +EL+ F+ G V+ D+V
Sbjct: 69 -----------------ASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK 111
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
D + V+M E +AIR TE++G+ + V+
Sbjct: 112 D-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>Hs13899354 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 359
Score = 37.4 bits (85), Expect = 0.025
Identities = 21/79 (26%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHW 147
++F+ LP QE++ +F+ G VL D++ + +G V++ K DAIR+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNL 55
Query: 148 TGTEYKGRVLDVKEGKGTS 166
+ G ++V+ K S
Sbjct: 56 HHYKLHGVNINVEASKNKS 74
Score = 35.8 bits (81), Expect = 0.073
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDN 60
++ F + G+V DII + G V + T + AIR+ L+G I V
Sbjct: 18 IRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE--- 68
Query: 61 PPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVT 120
K ++ V + + QEL+ F+ G V+ D+V
Sbjct: 69 -----------------ASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 111
Query: 121 DRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
D + V+M E +AIR TE++G+ + V+
Sbjct: 112 D-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 37.4 bits (85), Expect = 0.025
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 12/166 (7%)
Query: 9 GEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV---RQDNPPP 63
G V+ A ++ R G +G G V F + + A+ + +G + + R + + N P
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALP 238
Query: 64 AEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD 123
+ + ++ +FV L +V ELK +F G++LH +
Sbjct: 239 MQPAMYQNTQGANAGDNDPNNT--TIFVGGLDANVTDDELKSIFGQFGELLHVKI---PP 293
Query: 124 GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGKGTSTRT 169
GK GF V A K A+ GT+ G+ + + G+ + ++
Sbjct: 294 GKRCGF--VQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQS 337
>At1g58470 [R] KOG0118 FOG: RRM domain
Length = 360
Score = 37.4 bits (85), Expect = 0.025
Identities = 40/149 (26%), Positives = 60/149 (39%), Gaps = 21/149 (14%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
+K+YF + G V A + + G RG G V F N DV A+RD F+ G+ + VR+
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTH--FILGKPVDVRK 79
Query: 59 --------DNPPPAEISRTXXXXXXXXXXKRAHD----EGFEVFVAQLPFSVNWQELKDM 106
P + + + + ++FV L + +E K
Sbjct: 80 AIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSY 139
Query: 107 FKPCGDVLHADVVTDRDG---KSRGFGTV 132
F+ G DVV DG + RGFG V
Sbjct: 140 FERFGRT--TDVVVMHDGVTNRPRGFGFV 166
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 37.0 bits (84), Expect = 0.033
Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 1 MKEYFGKIGEVRRADI----ITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+++ F G ++ D+ +T + H+G VE+ A+ + L GR I V
Sbjct: 145 IRQAFAPFGPIKSIDMSWDSVTMK--HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 202
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+ P+ I + RA + ++VA + ++ ++K +F+ G +
Sbjct: 203 GR----PSNIGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSVFEAFGKIKSC 255
Query: 117 DVVTD-RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
+ D GK +G+G + + DA+ + G+ L V
Sbjct: 256 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 299
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 37.0 bits (84), Expect = 0.033
Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 1 MKEYFGKIGEVRRADI----ITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+++ F G ++ D+ +T + H+G VE+ A+ + L GR I V
Sbjct: 128 IRQAFAPFGPIKSIDMSWDSVTMK--HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 185
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+ P+ I + RA + ++VA + ++ ++K +F+ G +
Sbjct: 186 GR----PSNIGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSVFEAFGKIKSC 238
Query: 117 DVVTD-RDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDV 159
+ D GK +G+G + + DA+ + G+ L V
Sbjct: 239 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 282
>7301687 [R] KOG0118 FOG: RRM domain
Length = 365
Score = 37.0 bits (84), Expect = 0.033
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 1 MKEYFGKIGEVRRADIITSRG----HHRGMGTVEFNNSTDVDTAIRD----CDGAFLNGR 52
+K +F K G + D++ + RG G + +++S+ +D A + DG + +
Sbjct: 47 LKAHFEKWGNI--VDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPK 104
Query: 53 AIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
RQD P A ++FV L + Q ++D F+ G+
Sbjct: 105 RAVPRQDIDSP-----------------NAGATVKKLFVGALKDDHDEQSIRDYFQHFGN 147
Query: 113 VLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKE 161
++ ++V D++ GK RGF V + + + + G+++DVK+
Sbjct: 148 IVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVKK 196
>7301686 [R] KOG0118 FOG: RRM domain
Length = 363
Score = 37.0 bits (84), Expect = 0.033
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 1 MKEYFGKIGEVRRADIITSRG----HHRGMGTVEFNNSTDVDTAIRD----CDGAFLNGR 52
+K +F K G + D++ + RG G + +++S+ +D A + DG + +
Sbjct: 46 LKAHFEKWGNI--VDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPK 103
Query: 53 AIFVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGD 112
RQD P A ++FV L + Q ++D F+ G+
Sbjct: 104 RAVPRQDIDSP-----------------NAGATVKKLFVGALKDDHDEQSIRDYFQHFGN 146
Query: 113 VLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKE 161
++ ++V D++ GK RGF V + + + + G+++DVK+
Sbjct: 147 IVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVKK 195
>At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 161
Score = 37.0 bits (84), Expect = 0.033
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRHW 147
V+V +LP+ + +L +F G+V+ ++V D+ G+S+ F V + N A+ +
Sbjct: 32 VYVGELPYDLTEGDLLAVFSQYGEVVDLNLVRDKGTGRSKRFAFVAYEDQRSTNLAVDNI 91
Query: 148 TGTEYKGRVLDVK 160
G + GR++ V+
Sbjct: 92 NGAKVLGRIIKVE 104
>SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 833
Score = 36.6 bits (83), Expect = 0.043
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 25 GMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR---QDNPPPAEISRTXXXXXXXXXXKR 81
G G VEF + A+ +G L+G + ++ Q AE+ +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDS---------- 715
Query: 82 AHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQN 141
+ +G ++ + LPF ++++ + G + V D +RGF T +
Sbjct: 716 SKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAA 775
Query: 142 DAIRHWTGTEYKGRVL 157
+A+R T GR L
Sbjct: 776 NAMRALKNTHLLGRHL 791
>Hs4758542 [R] KOG0118 FOG: RRM domain
Length = 284
Score = 36.6 bits (83), Expect = 0.043
Identities = 28/86 (32%), Positives = 43/86 (49%), Gaps = 9/86 (10%)
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYM---A 135
K D G ++FV L + + ++LKD F G+V+ + D G+SRGFG + A
Sbjct: 62 KNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 120
Query: 136 TKEQQNDAIRHWTGTEYKGRVLDVKE 161
+ E+ D H GRV+D K+
Sbjct: 121 SVEKVLDQKEH----RLDGRVIDPKK 142
>Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 328
Score = 36.6 bits (83), Expect = 0.043
Identities = 33/139 (23%), Positives = 60/139 (42%), Gaps = 26/139 (18%)
Query: 1 MKEYFGKIGEVRRADII--TSRGHHRGMGTVEFNNSTDVDTAI----RDCDGAFLNGRAI 54
+++YF K GE+R ++ + RG G V F + VD + + D ++ +
Sbjct: 37 LRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVA 96
Query: 55 FVRQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVL 114
F R+ P ++RT ++FV L + +++K F+ G V
Sbjct: 97 FPRR--AQPKMVTRTK-----------------KIFVGGLSANTVVEDVKQYFEQFGKVE 137
Query: 115 HADVVTDR-DGKSRGFGTV 132
A ++ D+ + RGFG V
Sbjct: 138 DAMLMFDKTTNRHRGFGFV 156
>Hs14110404 [R] KOG0118 FOG: RRM domain
Length = 331
Score = 36.6 bits (83), Expect = 0.043
Identities = 28/86 (32%), Positives = 43/86 (49%), Gaps = 9/86 (10%)
Query: 80 KRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTD-RDGKSRGFGTVYM---A 135
K D G ++FV L + + ++LKD F G+V+ + D G+SRGFG + A
Sbjct: 62 KNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 120
Query: 136 TKEQQNDAIRHWTGTEYKGRVLDVKE 161
+ E+ D H GRV+D K+
Sbjct: 121 SVEKVLDQKEH----RLDGRVIDPKK 142
>Hs10863997 [A] KOG1190 Polypyrimidine tract-binding protein
Length = 531
Score = 36.6 bits (83), Expect = 0.043
Identities = 42/195 (21%), Positives = 75/195 (37%), Gaps = 28/195 (14%)
Query: 101 QELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
Q L +F GDV ++ ++ + + MA Q A+ H G + G+++ V
Sbjct: 353 QSLFTLFGVYGDVQRVKILYNKKDSA----LIQMADGNQSQLAMNHLNGQKMYGKIIRVT 408
Query: 161 EGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGGDRN--------SVI 212
K + + G D + P KP G +N + +
Sbjct: 409 LSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKP-----------GSKNFQNIFPPSATL 457
Query: 213 FCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDK 272
N+P S E DL LF + + K + H + + Q T E+A + L
Sbjct: 458 HLSNIPPSVAEEDLRTLFANTGGTV--KAFKFFQDH--KMALLQMATVEEAIQALIDLHN 513
Query: 273 YSYGD-HELKVTYAR 286
Y+ G+ H L+V++++
Sbjct: 514 YNLGENHHLRVSFSK 528
>CE07355 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 217
Score = 36.6 bits (83), Expect = 0.043
Identities = 34/156 (21%), Positives = 65/156 (40%), Gaps = 16/156 (10%)
Query: 89 VFVAQLPFSVNWQELKD----MFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
++V L V ELK +F G+++ +++ R K RG + ++A+
Sbjct: 10 IYVNNLNEKVKKDELKRSLHMVFTQFGEIIQ--LMSFRKEKMRGQAHIVFKEVSSASNAL 67
Query: 145 RHWTGTEYKGRVLDV---KEGKGTSTRTAATGAD-----TYIPRQPRNEPPATLKP--KP 194
R G + G+ + + +E +R T + T I ++P +P K +P
Sbjct: 68 RALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGKSAAEP 127
Query: 195 LDIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLF 230
+P G N+++FC N+P T + +F
Sbjct: 128 TQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIF 163
>At5g04600 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 222
Score = 36.6 bits (83), Expect = 0.043
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 163 KGTSTRTAATGADTYIPRQPRNEPPATLKPK---PLDIDPLAITTGGDRNSVIFCENMPS 219
K + AA+ + + +P +P A P P P+ ++ +V++ +P
Sbjct: 10 KKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPH 69
Query: 220 STTESDLYDLFGSVAPVIITKLLLNPE-GHFTRNSYCQFETPEDADICISKLDKYSYGDH 278
E+++ F V ++ N + G + QFE PE A+I ++ Y +H
Sbjct: 70 GFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEH 129
Query: 279 ELKV 282
LKV
Sbjct: 130 MLKV 133
>At2g22090 [R] KOG0118 FOG: RRM domain
Length = 347
Score = 36.6 bits (83), Expect = 0.043
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
++FV LP+ + L +F+ G++ VV D+ GK++GFG V T++ +A++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK- 163
Query: 147 WTGTEYKGRVLD 158
E K R+L+
Sbjct: 164 ----EPKKRILN 171
>At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 302
Score = 36.6 bits (83), Expect = 0.043
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAI 144
+VFV L + E++ F+ G++L A ++TD++ GKS+G+G V + A+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Score = 32.0 bits (71), Expect = 1.0
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 2/45 (4%)
Query: 1 MKEYFGKIGEVRRADIITSR--GHHRGMGTVEFNNSTDVDTAIRD 43
M+ YF + GE+ A IIT + G +G G V F S A+ D
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
>7298863 [A] KOG0533 RRM motif-containing protein
Length = 266
Score = 36.6 bits (83), Expect = 0.043
Identities = 24/103 (23%), Positives = 42/103 (40%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
+ V L + V+ ++K++F G + A V DR G+S G V + AI+ +
Sbjct: 111 LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYH 170
Query: 149 GTEYKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLK 191
G GR + ++ A T + R+ P + K
Sbjct: 171 GVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFK 213
>7294821 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 287
Score = 36.6 bits (83), Expect = 0.043
Identities = 21/69 (30%), Positives = 34/69 (48%), Gaps = 1/69 (1%)
Query: 91 VAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWTGT 150
V+ +PF +L+ MF G +L +++ + G S+GFG V A A GT
Sbjct: 201 VSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERG-SKGFGFVTFANSNDAERARERLHGT 259
Query: 151 EYKGRVLDV 159
+GR ++V
Sbjct: 260 VVEGRKIEV 268
Score = 34.3 bits (77), Expect = 0.21
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 1 MKEYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
++ FG+ G + +II + +G G V F NS D + A G + GR I V
Sbjct: 213 LRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEV 268
>7292101 [R] KOG4307 RNA binding protein RBM12/SWAN
Length = 985
Score = 36.6 bits (83), Expect = 0.043
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 210 SVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISK 269
+V++ E++P +TTE D+ +F + V+ L +P+ ++ F +AD +
Sbjct: 476 NVLYIEDLPQTTTEQDIMKMFSASYTVVDILLSPSPKNRRESVAFVLFAREAEADSALQD 535
Query: 270 LDKYSYGDHELKV 282
K+ G +L+V
Sbjct: 536 TSKHYIGFRQLRV 548
>Hs5031753 [A] KOG4211 Splicing factor hnRNP-F and related RNA-binding
proteins
Length = 449
Score = 36.2 bits (82), Expect = 0.056
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 212 IFCENMPSSTTESDLYDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISK 269
+ +P TE+D+Y+ F + PV + + + P+G T + +F T EDA +SK
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRV-HIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
>CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 36.2 bits (82), Expect = 0.056
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 1 MKEYFGKIGEVRRA----DIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+++YFG+ GEV D T R RG G + F + + VD + + + L+G+ I
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRA--RGFGFITFVDPSSVDKVLNNREHE-LDGKKI-- 115
Query: 57 RQDNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHA 116
+P A RT +VF+ L + +++K F+ G V A
Sbjct: 116 ---DPKVAFPKRTQAKLVTKTK---------KVFIGGLSATSTLEDMKQYFETYGKVEDA 163
Query: 117 DVVTDR-DGKSRGFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVKEGK 163
++ D+ + RGFG V + E D + E G++++ K+ +
Sbjct: 164 MLMFDKATQRHRGFGFVTFDSDEVA-DKVCEIHFHEINGKMVECKKAQ 210
>At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 271
Score = 36.2 bits (82), Expect = 0.056
Identities = 50/203 (24%), Positives = 69/203 (33%), Gaps = 50/203 (24%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAIRHWT 148
VFV + +L+ +F G V DR G+ VY + DAIR
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Query: 149 GTE--YKGRVLDVKEGKGTSTRTAATGADTYIPRQPRNEPPATLKPKPLDIDPLAITTGG 206
Y+ R L V+ KG R PR + A KP
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGR-------------PRGDAKAPSNLKP------------ 91
Query: 207 DRNSVIFCENM-PSSTTESDL---YDLFGSVAPVIITKLLLNPEGHFTRNSYCQFETPED 262
+F N P T E D+ ++ +G V V I + S+ QFET ED
Sbjct: 92 --TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNF----------SFVQFETQED 139
Query: 263 ADICISKLDKYSYGDHELKVTYA 285
A + + D + V YA
Sbjct: 140 ATKALEATQRSKILDRVVSVEYA 162
>At2g22100 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 36.2 bits (82), Expect = 0.056
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRH 146
+FV L + + LK F+ G++ VV D+D G+++GFG V T++ A+++
Sbjct: 117 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 175
>7299785 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 378
Score = 36.2 bits (82), Expect = 0.056
Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 1 MKEYFGKIGEVRRADIITS--RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQ 58
++++FGK GE+ ++ T G RG + F N+ +D + D +N + +
Sbjct: 150 LRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSAADEHIINSKKV---- 204
Query: 59 DNPPPAEISRTXXXXXXXXXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADV 118
K+A ++FV L ++ +E+K F G+++ ++
Sbjct: 205 -------------------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEM 245
Query: 119 VTDRDGKSR-GFGTVYMATKEQQNDAIRHWTGTEYKGRVLDVK 160
D+ R GF + +++ D ++ + G+ +DVK
Sbjct: 246 PFDKQKSQRKGFCFITFDSEQVVTDLLK-TPKQKIAGKEVDVK 287
>YHR086w [R] KOG0118 FOG: RRM domain
Length = 523
Score = 35.8 bits (81), Expect = 0.073
Identities = 17/36 (47%), Positives = 22/36 (60%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
G +G G V+F NS + A+ + G FLNGRAI V
Sbjct: 202 GMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237
Score = 32.3 bits (72), Expect = 0.80
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 89 VFVAQLPFSVNWQELKDMF-KPCGDVLHADVVTDR-DGKSRGFGTVYMATKEQQNDAIRH 146
+FV L +V +L ++F HA +V D+ G S+G+G V ++Q A+
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 147 WTGTEYKGRVLDVKEGKG 164
G GR + V G
Sbjct: 225 MQGVFLNGRAIKVGPTSG 242
>HsM14916449 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 35.8 bits (81), Expect = 0.073
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
V+V+ LPFS+ +L +F G V+ ++ D+D KS+G + K+ + R
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 148 TGTEYKGRVL 157
+ GRV+
Sbjct: 72 NNKQLFGRVI 81
>Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 246
Score = 35.8 bits (81), Expect = 0.073
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Query: 1 MKEYFGKIGEVRRADIITS--RGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFV 56
+KE F + G++RR ++ G +G +E+ V A RD DG ++ IFV
Sbjct: 67 LKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFV 124
>Hs5031703 [T] KOG0116 RasGAP SH3 binding protein rasputin contains NTF2 and
RRM domains
Length = 466
Score = 35.8 bits (81), Expect = 0.073
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 83 HDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQND 142
H + ++F+ LP V+ ELKD F+ G+V+ + + GK FG V E
Sbjct: 336 HPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI--NSGGKLPNFGFVVFDDSEPVQK 393
Query: 143 AIRHWTGTEYKGRV-LDVKEGKGTSTRTAATG 173
+ + ++G V L+V+E K TR A G
Sbjct: 394 VLSN-RPIMFRGEVRLNVEEKK---TRAAREG 421
Score = 30.4 bits (67), Expect = 3.0
Identities = 27/110 (24%), Positives = 44/110 (39%), Gaps = 10/110 (9%)
Query: 180 RQPRNEPPATLKPKPL-------DIDPLAITTGGDRNSVIFCENMPSSTTESDLYDLFGS 232
R+ R P P+P+ DI+P + D + +F N+P +S+L D F S
Sbjct: 304 REQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQ-LFIGNLPHEVDKSELKDFFQS 362
Query: 233 VAPVIITKLLLNPEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKV 282
V+ +L +N G + F+ E +S G+ L V
Sbjct: 363 YGNVV--ELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNV 410
>Hs4507123 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 225
Score = 35.8 bits (81), Expect = 0.073
Identities = 48/222 (21%), Positives = 85/222 (37%), Gaps = 30/222 (13%)
Query: 89 VFVAQLPFSVNWQELKD----MFKPCGDVLHADVVTDRDGKSRGFGTVYMATKEQQNDAI 144
+++ + + +ELK +F G V+ D+V + K RG V +A+
Sbjct: 9 IYINNMNDKIKKEELKRSLYALFSQFGHVV--DIVALKTMKMRGQAFVIFKELGSSTNAL 66
Query: 145 RHWTGTEYKGRVLDVKEGKGTS---TRTAATGADTYIPRQPRN-----EPPATLKPKPLD 196
R G + G+ + ++ K S ++ T AD ++ + + T KP
Sbjct: 67 RQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQ 126
Query: 197 IDPLAITTGGDR-----------NSVIFCENMPSSTTESDLYDLFGSVAPVIITKLLLNP 245
P + T G+ N ++F N+P T E L LF ++ L P
Sbjct: 127 GTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG--FKEVRLVP 184
Query: 246 EGHFTRNSYCQFETPEDADICISKLDKYSY-GDHELKVTYAR 286
H ++ +FE A L + H +K+TYA+
Sbjct: 185 GRHDI--AFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>Hs21314767 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 35.8 bits (81), Expect = 0.073
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Query: 89 VFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRD-GKSRGFGTVYMATKEQQNDAIRHW 147
V+V+ LPFS+ +L +F G V+ ++ D+D KS+G + K+ + R
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 148 TGTEYKGRVL 157
+ GRV+
Sbjct: 72 NNKQLFGRVI 81
>Hs18550462 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 35.8 bits (81), Expect = 0.073
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 2/74 (2%)
Query: 88 EVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGK-SRGFGTVYMATKEQQNDAIRH 146
++F+ L F + LK F+ G + V+ D + K SRGFG V AT E+ DA+ +
Sbjct: 87 KLFIGWLSFETTDESLKSHFEQWGTLTDCAVMRDPNTKRSRGFGFVTHATAEEV-DAVMN 145
Query: 147 WTGTEYKGRVLDVK 160
+ GRV++ K
Sbjct: 146 TRPHKVDGRVVEPK 159
>CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 749
Score = 35.8 bits (81), Expect = 0.073
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
E FG+I + + A T RGH RG G +EFNN T AI + L G+ + V + P
Sbjct: 228 EAFGEIVKCQLARAPTGRGH-RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVTP 286
Query: 63 P 63
P
Sbjct: 287 P 287
Score = 32.7 bits (73), Expect = 0.61
Identities = 31/144 (21%), Positives = 58/144 (39%), Gaps = 8/144 (5%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR----QDNPPPAEISRTXXXXXXX 76
GHH+ VE+ A +G L GR + V Q+ P + +
Sbjct: 140 GHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMV 199
Query: 77 XXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKS-RGFGTVYMA 135
+ + F V+V+ + ++ +LK +F+ G+++ + G+ RGFG +
Sbjct: 200 QKDAKKY---FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFN 256
Query: 136 TKEQQNDAIRHWTGTEYKGRVLDV 159
Q++AI + G+ L V
Sbjct: 257 NLTSQSEAIAGMNMFDLGGQYLRV 280
>CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 339
Score = 35.8 bits (81), Expect = 0.073
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 3 EYFGKIGEVRRADIITSRGHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVRQDNPP 62
E FG+I + + A T RGH RG G +EFNN T AI + L G+ + V + P
Sbjct: 228 EAFGEIVKCQLARAPTGRGH-RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVTP 286
Query: 63 P 63
P
Sbjct: 287 P 287
Score = 32.7 bits (73), Expect = 0.61
Identities = 31/144 (21%), Positives = 58/144 (39%), Gaps = 8/144 (5%)
Query: 21 GHHRGMGTVEFNNSTDVDTAIRDCDGAFLNGRAIFVR----QDNPPPAEISRTXXXXXXX 76
GHH+ VE+ A +G L GR + V Q+ P + +
Sbjct: 140 GHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMV 199
Query: 77 XXXKRAHDEGFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDRDGKS-RGFGTVYMA 135
+ + F V+V+ + ++ +LK +F+ G+++ + G+ RGFG +
Sbjct: 200 QKDAKKY---FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFN 256
Query: 136 TKEQQNDAIRHWTGTEYKGRVLDV 159
Q++AI + G+ L V
Sbjct: 257 NLTSQSEAIAGMNMFDLGGQYLRV 280
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,492,412
Number of Sequences: 60738
Number of extensions: 824094
Number of successful extensions: 3210
Number of sequences better than 10.0: 452
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 2222
Number of HSP's gapped (non-prelim): 997
length of query: 287
length of database: 30,389,216
effective HSP length: 105
effective length of query: 182
effective length of database: 24,011,726
effective search space: 4370134132
effective search space used: 4370134132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)