ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV1304   suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1304 433653  435671 673  
         (673 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR034c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...   127   6e-29

>YDR034c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 790

 Score =  127 bits (319), Expect = 6e-29
 Identities = 143/627 (22%), Positives = 246/627 (38%), Gaps = 128/627 (20%)

Query: 5   TPDTAVSNVTEPAKK---KRKYSKNGCLECKRKKVKCDETKPMCWQCTHLSLECVYKTKE 61
           TP+ AV++     K    KRKYS+NGC ECKR+++KCDETKP CWQC  L+ +CVY    
Sbjct: 133 TPNPAVTSTVTDKKGNTVKRKYSRNGCSECKRRRMKCDETKPTCWQCARLNRQCVY---- 188

Query: 62  FQFVVSGGPNKSRVNSKVTSVSD-KKRKNKEDGDLHRKNMEHHSSSDTRKLSNNERDVDF 120
               V    NK R  S    V + +K     D D +      HSS    K     +++  
Sbjct: 189 ----VLNPKNKKRRTSNAQRVKEFRKHSTSLDNDHNNARKRQHSSCKAEKKKKVRQNLSE 244

Query: 121 EHAATNAIGNDEXXXXXXXXXXXXXXXXXXSKLPETDAVTANQGQQKSI--SSINDDIGG 178
           +      I ++                    ++P  D  T   G   ++   ++ND +  
Sbjct: 245 DTTDPKPITDN--------GKNVPLDEIESLEIPNLDLTTTMNGYDVNLLMQNLNDMVNM 296

Query: 179 PVFNRW---EEIEGM-LGEVSKSEL----------------------------------- 199
            + + +   EE++G+ L ++   EL                                   
Sbjct: 297 KLHDSYLLNEELKGLDLPDLDIPELLPASNVNSSVPISFLVNNVITFNTKLSSFKLGGIH 356

Query: 200 -SYLKIFYDNVSYWLMPLAQSPDSNICNHILFQHVIRANKKHAREKSYLQSSMVSISAKY 258
             YLKIFY +    + P  Q+  + + + +L           A+ ++YL SS+++  A  
Sbjct: 357 DKYLKIFYYDCLDSIAPFFQNQGNPLRDILL---------SFAKNEAYLLSSILATGASI 407

Query: 259 VYNVYGKEHDNIIRKHFLRKALQQLYQEFESLSQESLGFSQIDSLNLCVLLLTLDSSTFG 318
            Y       D      +L   L  L ++F++   ES   ++I+ + L V++L  D     
Sbjct: 408 AYRKSNNLEDERNYCAYLSHCLSLLGEQFKN---ESNVLNRIEPIILTVIMLAWDCIYSM 464

Query: 319 TQEWKFHLRGAKDLLMKYNDNREMVTGSTGSTLLHRRTVTLARNWFCAIAIVACVAK--G 376
             +W+ HL+G  DL  K N       G++   L       +A+ WF  +   A ++   G
Sbjct: 465 NSQWRSHLKGVTDLFKKIN------AGNSSKVL------NVAKCWFKVMETFASISTVFG 512

Query: 377 NHFFNEAEMEEMLDIGSSDSSMSDNLMKQMGFISGNNYNTFLGYSKEGILLIKEVMKCLN 436
               +  +++ + D    D    D+L         N +N   G+ ++  L+IKEV K LN
Sbjct: 513 GSLIDNNDLDAIFD--PYDYQYVDSLKFLNIMTPLNEFNLLRGHKEDFDLVIKEVFKSLN 570

Query: 437 ---------------------------ADTGQDDNND--SFLNVCSLL---QASREYQFY 464
                                      + T  + + D  S+ N   +L       +Y+F 
Sbjct: 571 TIRSTEKNYFSKEEGLFTKKLDYLLLSSQTSSEKSKDQISYFNTQKILVEIDKQLDYEFI 630

Query: 465 PNTYGKVDTDN-----YSLIPSFTSDVASVVFHKLSVYSIYDSIHQTHVELLFVTYLLRS 519
             + G + +DN      S I     D+ ++   +    S YD  HQT V    +  LL+ 
Sbjct: 631 DKS-GIIPSDNQSHPRISNIHDNAIDMVTLKNGEEVAISWYDISHQTQVLSFLLIVLLKL 689

Query: 520 AKLPEDCSLVLNSCKRVWKMLEWMFSD 546
             +P++ S +    K++    +++ SD
Sbjct: 690 LGMPKESSTIQQVVKKIMSFFKFLDSD 716


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,295,008
Number of Sequences: 60738
Number of extensions: 1628762
Number of successful extensions: 4901
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4897
Number of HSP's gapped (non-prelim): 3
length of query: 673
length of database: 30,389,216
effective HSP length: 113
effective length of query: 560
effective length of database: 23,525,822
effective search space: 13174460320
effective search space used: 13174460320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)