ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1318 good C KOG3352 Energy production and conversion Cytochrome c oxidase, subunit Vb/COX4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1318 438653  439114 154  
         (154 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL187c [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4              223   1e-58
SPAC1296.02 [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4          140   5e-34
At1g80230 [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4             50   9e-07
Hs17017988 [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4            49   2e-06

>YGL187c [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4
          Length = 155

 Score =  223 bits (567), Expect = 1e-58
 Identities = 111/155 (71%), Positives = 128/155 (81%), Gaps = 2/155 (1%)

Query: 1   MLSLRQSLSKLFGPASRAFATTKVAGDQQ-VVKTATKLAEVNGADTLIGPGAKDGEVPTE 59
           MLSLRQS+ + F PA+R   +++    Q+ VVKTA  LAEVNG +TLIGPGAK+G VPT+
Sbjct: 1   MLSLRQSI-RFFKPATRTLCSSRYLLQQKPVVKTAQNLAEVNGPETLIGPGAKEGTVPTD 59

Query: 60  LDQATGLARLELLGKLEGIEVFDTKPLDSSRIGTMENPIIVESYDDYRYVGATGSPAGSH 119
           LDQ TGLARLELLGKLEGI+VFDTKPLDSSR GTM++PII+ESYDDYRYVG TGSPAGSH
Sbjct: 60  LDQETGLARLELLGKLEGIDVFDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAGSH 119

Query: 120 NVMWLKPTDGQVARCWETGCVYKLKMVGVPQEGHH 154
            +MWLKPT  +VARCWE G VYKL  VGVP + HH
Sbjct: 120 TIMWLKPTVNEVARCWECGSVYKLNPVGVPNDDHH 154


>SPAC1296.02 [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4
          Length = 164

 Score =  140 bits (354), Expect = 5e-34
 Identities = 71/139 (51%), Positives = 93/139 (66%), Gaps = 2/139 (1%)

Query: 17  RAFATTKVA-GDQQVVKTATK-LAEVNGADTLIGPGAKDGEVPTELDQATGLARLELLGK 74
           R F +  +   +Q VVK A + LA       LIGPG +DGEVPT+L+QATGL R ELL +
Sbjct: 24  RGFVSASIRRNEQNVVKAAAQELANAKEPSDLIGPGGRDGEVPTDLEQATGLERYELLSE 83

Query: 75  LEGIEVFDTKPLDSSRIGTMENPIIVESYDDYRYVGATGSPAGSHNVMWLKPTDGQVARC 134
           L G + FD KPLD+SR GT+ +PI+V S D YR++G TGSP+GSHN++W+     ++ RC
Sbjct: 84  LSGRDAFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTGSPSGSHNLIWMTVYKDKLRRC 143

Query: 135 WETGCVYKLKMVGVPQEGH 153
            E G VYKLK +G P   H
Sbjct: 144 PECGSVYKLKFMGDPNAEH 162


>At1g80230 [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4
          Length = 171

 Score = 50.4 bits (119), Expect = 9e-07
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 46  LIGPGAKDGEVPTELDQ----ATGLARLELLGKLEGIEVFDTKPLDSSRIGTMENPIIVE 101
           LIG  A D  V   ++     ATG  + EL  +LEG ++ D         GT E P +V+
Sbjct: 53  LIGSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDID-FPEGPFGTKEAPAVVK 111

Query: 102 SYDDYRYVGATGSPA-GSHNVMWLKPTDGQVARCWETGCVYKLKMVGV--PQEGH 153
           SY D R VG  G      H+V+W     G+   C      +KL++VG   P +GH
Sbjct: 112 SYYDMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGH 166


>Hs17017988 [C] KOG3352 Cytochrome c oxidase subunit Vb/COX4
          Length = 129

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 51  AKDGEVPTELDQATGLARLELLGKLEGIEVFDT-KPLDSSRIGTMENPIIVESYDDYRYV 109
           A  G VPT+ +QATGL R  +L   +G++ ++   P  +S  GT E+P +V S  + R V
Sbjct: 32  ASGGGVPTDEEQATGLEREIMLAAKKGLDPYNVLAPKGAS--GTREDPNLVPSISNKRIV 89

Query: 110 GATGSPAGSHNVMWLKPTDGQVARCWETGCVYKLKMVGVPQEGHH 154
           G       + +V+W     G+  RC   G  YKL    VPQ+  H
Sbjct: 90  GCI-CEEDNTSVVWFWLHKGEAQRCPRCGAHYKL----VPQQLAH 129


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,161,365
Number of Sequences: 60738
Number of extensions: 377774
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 30,389,216
effective HSP length: 97
effective length of query: 57
effective length of database: 24,497,630
effective search space: 1396364910
effective search space used: 1396364910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)