ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1357 good KL KOG1038 Replication, recombination and repair Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation
r_klactIV1357 good KL KOG1038 Transcription Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1357 454560 450772 -1263
(1263 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFL036w [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA ... 1432 0.0
SPAC26H5.12 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed ... 738 0.0
At5g15700 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RN... 511 e-144
At2g24120 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RN... 507 e-143
At1g68990 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RN... 492 e-138
Hs14790138 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed R... 452 e-126
7296127 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA ... 423 e-118
CE25704 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA ... 379 e-104
>YFL036w [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 1351
Score = 1432 bits (3707), Expect = 0.0
Identities = 727/1310 (55%), Positives = 951/1310 (72%), Gaps = 67/1310 (5%)
Query: 19 PRILQSSPVRLTTFRLASSVENSPVTDLGFAKSSRASI--------QPNFTPFDSTTAG- 69
P + SSP TT + SS + P+ + K +++SI + F PF+ + A
Sbjct: 44 PLVTGSSPTSSTTSGIISS-NDFPLFNKN-RKDAKSSISYQWKNPSELEFDPFNKSHASA 101
Query: 70 VEAHERTT-YFNLWSLLEACLNAGYMDRAFSILQSLYESKVHAKFFIRDYNEYLLKYSTT 128
V + RT LWSLLEACL + M RAFSIL+SLY H + FI DYN YL +S
Sbjct: 102 VTSMTRTRDVMQLWSLLEACLQSNLMKRAFSILESLYLVPEHKQRFIEDYNMYLNSFSKN 161
Query: 129 VDNIDTLQ--EKLFNDLNNVFKDFSYDDRTXXXXXXXX----XXXXDKNMYNNCQKFLAM 182
N L+ EKL NDL FKD +Y+D+T + +L M
Sbjct: 162 DPNFPILKMNEKLTNDLETSFKDVNYNDKTLAIMIHHALNFHSTTSSMLLKPIISAYLKM 221
Query: 183 NLNGNRSILKNLDILTVSDYATLFRELKLINLTDIPEAVRSIIE------------ESED 230
++NG R I LDILT+SD L +LK+I + +P +VR I+E E+E+
Sbjct: 222 SVNGIREIFSCLDILTISDLNILMNDLKVITPSQLPNSVRPILESLTLSPTPVNNIENEE 281
Query: 231 ---------------PSNSLTISAKK------------GVVETLPKDAVELKPVDTFGLK 263
SN+ + S KK G E L KDA +L VDT G++
Sbjct: 282 GLNKVEAENDSKLHKASNASSDSIKKPSLDPLREVSFHGSTEVLSKDAEKLIAVDTIGMR 341
Query: 264 AVRISLQGLSISPEQRERIDEYLSDPS-----MQSMINGTTEKNINFFEIYKNLKTEEEQ 318
+R +L GLS++PEQ+E+I ++ D + M+ N +INFFEIY +L T EE+
Sbjct: 342 VIRHTLLGLSLTPEQKEQISKFKFDANDNVLKMKPTKNDDNNNSINFFEIYNSLPTLEEK 401
Query: 319 EAFNEFLDMINVERQRELENRSFDASKERWKYEFDQAASQGGLKLKKNLNVRLWEWYQQM 378
+AF L++ N +RQ+ LENR+ +A++ERWK++F++A ++G + ++KNLNV+LW+WY +M
Sbjct: 402 KAFESALNIFNQDRQKVLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEM 461
Query: 379 LPVVRQEVALCQDLLEK---EQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKLQS 435
LP+V++E+ C+ LL + ++K NK +++RL YGPYL L++P KMCVITILELLKL S
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 436 SGGVTEGMRTARAVLSVGRSIEMEFRSEKLLRSENKMFKEVNKRSHEFKMFVQNAKTALR 495
+GGV EGMRTARAV+SVG++IEMEFRSE++L+SE++ F++VNK+S EFK VQNAK+ R
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQAFRDVNKKSPEFKKLVQNAKSVFR 581
Query: 496 NMHVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVVGEAPAFCHTFQYR 555
+ +E++ I WP ++A+IGS+LISMLI V+KV+V+GVDP+TK KV GEAPAF H +QY
Sbjct: 582 SSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAPAFAHGYQYH 641
Query: 556 SGTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVRPRPWTNWNSGGYNYSQSTLIRSR 615
+G+K+G+LKIH++L+ QL+ ER+ ++QPQ LPMLV P+PW NW SGGY+Y+QSTL+R++
Sbjct: 642 NGSKLGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTK 701
Query: 616 DSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIVSEVWNTGEGFLDIPPVL 675
DSPEQ+AY+KA S+ G ID VY+GLNVLG TPWT+N K+F++VS+VWN GEGFLDIP
Sbjct: 702 DSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQ 761
Query: 676 DNFEFPPQPARSEDPLILKEWRNKCRQMSNEFKGFKSYRCDSNYKLEIARAFLGEKFYFP 735
D PP P ++ DP IL+ W+ + + ++N+F +S RCD+NYKLEIARAFLGEK YFP
Sbjct: 762 DEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEKLYFP 821
Query: 736 HNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWLKIHLANLYGMDKCSFE 795
HN+DFRGRAYPL+PHFNHLGNDM+R LLIFW+GKKLG SGL+WLKIHL+NL+G DK +
Sbjct: 822 HNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLFGFDKLPLK 881
Query: 796 ERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIELNEALKLDNPENFISHQP 855
+RV F ++HL++I++SAE+PL G RWWT ADKPWQ LATC ELNE +K+DNPE FISHQP
Sbjct: 882 DRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQP 941
Query: 856 VHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTKRLENSAAAGDEQA 915
VHQDGTCNGLQHYAALGGD+EGA QVNLVPSD+PQDVYA VA+LV KRLE +A GDE A
Sbjct: 942 VHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDENA 1001
Query: 916 AILKDLISRKVVKRTVMTNVYGVTFVGAADQIMKELDQYFDKPEESNELSRYLAKHVFAS 975
ILKD I+RKVVK+TVMTNVYGVT+VGA QI K+L FD +ES + S+YL KHVF++
Sbjct: 1002 KILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSPIFDDRKESLDFSKYLTKHVFSA 1061
Query: 976 IRELFHAAHLIQDWLGECAKKISKSVRLDFDLNQSKTINSSDLMTSVIWTSPLGLPVVQP 1035
IRELFH+AHLIQDWLGE AK+ISKS+RLD D K N D M+SVIWT+PLGLP+VQP
Sbjct: 1062 IRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQP 1121
Query: 1036 YRDLKKKQVQTNLQTVFITDPFAINPINPRRQQAGLPPNFIHSLDASHMLLSAIQCGKAG 1095
YR+ KKQV+TNLQTVFI+DPFA+NP+N RRQ+AGLPPNFIHSLDASHMLLSA +CGK G
Sbjct: 1122 YREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQG 1181
Query: 1096 LDFAAVHDSYWTHASEVDNMNRLLRQEFIKLHEVDLIERLKNEFDERYRDYLEIVKISRD 1155
LDFA+VHDSYWTHAS++D MN +LR++FIKLHEVDL+ RLK EFD+RY++Y++I K+ R
Sbjct: 1182 LDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQRYKNYVKIGKLKRS 1241
Query: 1156 SALGQKILEVRADFAKKEGRNMTIADEIRMEKRRVELMRSDKPEDQAEAASMVTTVSCTL 1215
+ L QKI+ +R D ++K GR+ T+ADEI EK+R EL+ S ED+ MVTTVS
Sbjct: 1242 TDLAQKIIRIRKDLSRKLGRSTTLADEIYFEKKRQELLNSPLIEDRNVGEKMVTTVSLFE 1301
Query: 1216 DY-DMQQEEARS-KTKVSQLTILTPLRLPEIPPKGEFDVQELLHSKYFFS 1263
D D+ E + + S +++L PLRLPEIPPKG+FDV L +S+YFFS
Sbjct: 1302 DITDLDALELENGGDENSGMSVLLPLRLPEIPPKGDFDVTVLRNSQYFFS 1351
>SPAC26H5.12 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 1120
Score = 738 bits (1905), Expect = 0.0
Identities = 375/848 (44%), Positives = 537/848 (63%), Gaps = 20/848 (2%)
Query: 311 NLKTEEEQEAFNEFLDMINVERQRELENRSFDASKERWKYEFDQAASQGGLKLKKNLNVR 370
+L +E F D N+ RQ+ LE + ++ E WK E + ++G L++ KN++
Sbjct: 233 DLPIDEVSLEFGNQGDTFNLARQKLLEKSAILSAAEVWKSEHESVLNRGNLQVPKNVSSL 292
Query: 371 LWEWYQQMLPVVRQEVALCQDLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILEL 430
+ WY Q+ + ++E++L DL E +K+N DRL YGP+L L+ +K+ +TI+E+
Sbjct: 293 FYSWYVQLEQLFKEEISLIDDLALNESL--DKKN-DRLIYGPFLKLLSSKKLAALTIMEV 349
Query: 431 LKLQSSGGVTEGMRTARAVLSVGRSIEMEFRSEKLLRSEN-------KMFKEVNKRSHEF 483
+L ++ G R + +GRS E EF SE++ R E K KE+ +F
Sbjct: 350 AQLSTNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKKRLKELFNDPRKF 409
Query: 484 KMFVQNAKTALR--NMHVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKV 541
+ V+N + + N+ + ++ WPS + K+GS+ + +L+ V+K+ V D T +
Sbjct: 410 RQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIEVTAKDLSTGGIL 469
Query: 542 VGEAPAFCHTFQYRSGTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVRPRPWTNWNS 601
E AF HT+QY +G K+G++ H LS + ++ PQ LPMLV P+PWT+W
Sbjct: 470 KQEVAAFVHTYQYSNGRKVGMIVPHVEFYKLLSRDIEKPHLHPQLLPMLVTPKPWTSWID 529
Query: 602 GGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIVSEV 661
GGY YS+ L+R + + EQ+ Y+ SE G +D +++ ++ LG W IN++LFN++ +
Sbjct: 530 GGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKVSWRINQRLFNVLIRI 589
Query: 662 WNTGEGFLDIPPVLDNFEFPPQPARSEDPLILKEWRNKCRQMSNEFKGFKSYRCDSNYKL 721
WN+GE FL IPP + PP P S +P W + ++++ G S RCD NYKL
Sbjct: 590 WNSGEKFLSIPPREVKCDMPPYPKNSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKL 649
Query: 722 EIARAFLGEKFYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWLKI 781
EIARAFL EKFYFPH++DFRGRAYPL+ H +H+ ND+ R LL F GK LG GL WLK+
Sbjct: 650 EIARAFLNEKFYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLEFSTGKPLGPKGLNWLKV 709
Query: 782 HLANLYGMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIELNEA 841
HLANL+G+ K F R F D +++E+ +SA+ PLDG +WW+KAD P+Q LA C E+ EA
Sbjct: 710 HLANLFGISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWWSKADDPFQALAACFEIAEA 769
Query: 842 LKLDNPENFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVT 901
++ + E++ISH P+ QDGTCNGLQHYAALGGDIEGA+QVNL PSD P DVY VA++V
Sbjct: 770 VRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQVNLWPSDHPSDVYEAVAEIVR 829
Query: 902 KRLENSAAAGDEQAAILKDLISRKVVKRTVMTNVYGVTFVGAADQIMKELDQYFDKPEES 961
L+ A AGDE A LKD ++R VVK TVMTNVYGVT+VGA QI ++L+ D E+
Sbjct: 830 GFLKKDAEAGDEMANFLKDKVTRSVVKPTVMTNVYGVTYVGARKQISEKLEN-IDGMEKL 888
Query: 962 N--ELSRYLAKHVFASIRELFHAAHLIQDWLGECAKKISKSVRLDFDLNQSKTINSSDLM 1019
+ + YL K VF ++R LF AH IQDWL C I+ S+ D+ K D +
Sbjct: 889 KVADYANYLTKKVFEALRSLFTQAHEIQDWLSACCNLITHSLPADYIKEGIK-----DEL 943
Query: 1020 TSVIWTSPLGLPVVQPYRDLKKKQVQTNLQTVFITDPFAINPINPRRQQAGLPPNFIHSL 1079
T V+WT+ L LP+VQPYR+ K +Q++TNLQTVFI + + P +Q PPNFIHSL
Sbjct: 944 TPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERDRTATVQPHKQATAFPPNFIHSL 1003
Query: 1080 DASHMLLSAIQCGKAGLDFAAVHDSYWTHASEVDNMNRLLRQEFIKLHEVDLIERLKNEF 1139
DA+HM ++ ++C + ++FAAVHDSYWTHA +VD MN LLR+ F+ LH +++ERLK EF
Sbjct: 1004 DATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNSLLREAFVLLHSNNIMERLKQEF 1063
Query: 1140 DERYRDYL 1147
+ERY+ +L
Sbjct: 1064 EERYKGFL 1071
>At5g15700 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 1011
Score = 511 bits (1316), Expect = e-144
Identities = 312/917 (34%), Positives = 498/917 (54%), Gaps = 113/917 (12%)
Query: 295 INGTTEKNINFFEIYKNLKTE-EEQEAFNEFLDMINVERQRELENRSFDASKERWKYEFD 353
++GT + + L T+ EE+ +E L + E++RE S W+ +
Sbjct: 113 LSGTLARGYTSVAEEEVLSTDVEEEPEVDELLKEMKKEKKRE--------SHRSWRMKKQ 164
Query: 354 QAASQGGLKL----KKNLNVRLWEWYQQMLPVVRQEVALCQ------------------- 390
G K ++ + + EW + + +C+
Sbjct: 165 DQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFE 224
Query: 391 ---DLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKLQSSGGVTEGMRTAR 447
D + K+Q+ + + Y YL + +K+ VIT+ +L+ +GG ++
Sbjct: 225 PLRDAIAKDQEL-YRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVH 283
Query: 448 AVLSVGRSIEMEFR---------------------SEKLLRSENKMFKEVNKRSHEFKMF 486
A +VG +IE E R +E ++ ++K+ K+VN+ + K+
Sbjct: 284 AACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKL- 342
Query: 487 VQNAKTALRNMHVEENMIQ-WPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEK--VVG 543
+A+R + + + W +DV+AK+GS LI +L+ + + P ++ +
Sbjct: 343 -----SAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQ----SPADQQDNDLPD 393
Query: 544 EAPAFCHTFQY-----RSGTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVRPRPWTN 598
PAF HTF+ SG K G+++ LV + + + P ++PMLV P W+
Sbjct: 394 VRPAFVHTFKVAKGSMNSGRKYGVIECD-PLVRKGLEKSGRYAVMP-YMPMLVPPLKWSG 451
Query: 599 WNSGGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIV 658
++ G Y + S ++++ + +Q +K+ + +G + V+E L+ LG+T W +N+++ +V
Sbjct: 452 YDKGAYLFLTSYIMKTHGAKQQREALKS-APKGQLQPVFEALDTLGSTKWRVNKRVLTVV 510
Query: 659 SEVWNTGEGFLDIPPVLDNFEFP-PQPARSEDPLILKEWRNKCRQMSNEFKGFKSYRCDS 717
+W++G D+ +D + P P+ +ED ILK+W+ + + S RCD+
Sbjct: 511 DRIWSSGGCVADM---VDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDT 567
Query: 718 NYKLEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGL 776
KL +AR E+ FY+PHNMDFRGRAYP+ PH NHLG+D+ R +L F G+ +G SGL
Sbjct: 568 ELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGL 627
Query: 777 QWLKIHLANLY--GMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLAT 834
+WLKIHLANLY G+DK S + R+ F + HL +I +SA+ PL+G+RWW +A+ P+Q LA
Sbjct: 628 RWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAV 687
Query: 835 CIELNEALKLDNPENFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYA 894
CI L EAL+ +PE +SH P+HQDG+CNGLQHYAALG D GA VNLV ++P DVY+
Sbjct: 688 CISLTEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYS 747
Query: 895 FVAKLVTKRLENSAAAGDE------QAAILKDLISRKVVKRTVMTNVYGVTFVGAADQIM 948
+A V + A E +A L + + RK+VK+TVMT+VYGVT++GA DQI
Sbjct: 748 GIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIK 807
Query: 949 KELDQYFDKPEESNELSR--YLAKHVFASIRELFHAAHLIQDWLGECAKKISKSVRLDFD 1006
+ L + D +E Y AK A+I E+F AA I W GECAK I+
Sbjct: 808 RRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIA-------- 859
Query: 1007 LNQSKTINSSDLMTSVIWTSPLGLPVVQPYRDLKKKQVQTNLQTVFITDPFAINPINPRR 1066
++++T+ WT+PLGLPVVQPY + K V+T+LQT+ + + + RR
Sbjct: 860 -SENETVR---------WTTPLGLPVVQPYHQMGTKLVKTSLQTLSL--QHETDQVIVRR 907
Query: 1067 QQAGLPPNFIHSLDASHMLLSAIQCGKAGLDFAAVHDSYWTHASEVDNMNRLLRQEFIKL 1126
Q+ PPNFIHSLD SHM+++A+ C +AG+ FA VHDS+WTHA +VD +N +LR++F++L
Sbjct: 908 QRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVEL 967
Query: 1127 HEVDLIERLKNEFDERY 1143
+ ++E L F++ +
Sbjct: 968 YSQPILENLLESFEQSF 984
>At2g24120 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 993
Score = 507 bits (1305), Expect = e-143
Identities = 307/862 (35%), Positives = 482/862 (55%), Gaps = 88/862 (10%)
Query: 328 INVERQRELENRSFDASKER--------WKYEFDQAASQGGLKLKKNLNVRL-------W 372
+ +ER ++++ R FD+ + R W+ D+ +KNL L
Sbjct: 147 LKIER-KDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFL 205
Query: 373 EWYQQMLPVVRQEVALCQDLLEKEQKAP-NKQNSDRLKYGPYLLLVEPEKMCVITILELL 431
W+Q + +D++E+EQK NK R Y P++ L+ +KM VI + +++
Sbjct: 206 GWFQPL-----------KDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMM 254
Query: 432 KLQSSGGVTEGMRTARAVLSVGRSIEMEFRSEKLL-RSENKMFKEVNKRSHEFKMFVQNA 490
L SG ++ +A +S+G +IE E R L R+ + + E ++ +
Sbjct: 255 GLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRKRV 314
Query: 491 KTALRNMHV--------EENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITK--EK 540
+ +R + E W +AK+GS L+ +LI + V P+T+ +
Sbjct: 315 NSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQ----PPLTQSGDS 370
Query: 541 VVGEAPAFCHTFQYRS---GTKI----GILKIHRSLVNQLSAERMTTNIQPQHLPMLVRP 593
+ PAF H F+ + G+K+ G+++ L+ L ++ ++ ++PMLV P
Sbjct: 371 IPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGL--DKSAKHMLIPYVPMLVPP 428
Query: 594 RPWTNWNSGGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEK 653
+ W ++ GGY + S ++R+ S +Q +K +S + + V+E L+ LGNT W +N
Sbjct: 429 KRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHK-TAHRVFEALDTLGNTKWRVNRN 487
Query: 654 LFNIVSEVWNTGEGFLDIPPVLDNFEFP-PQPARSEDPLILKEWRNKCRQMSNEFKGFKS 712
+ ++V +W G +I +++ + P P+ SEDP L+ W+ R+ + + S
Sbjct: 488 ILDVVERLWADGG---NIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHS 544
Query: 713 YRCDSNYKLEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKL 771
RCD KL +AR E+ FY+PHN+DFRGRAYP+ PH NHL +D+ R L F G+ L
Sbjct: 545 LRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPL 604
Query: 772 GTSGLQWLKIHLANLY--GMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPW 829
G SGL WLKIHLANLY G++K S + R+ F + HL +I +SAE+P+ G RWW KA+ P+
Sbjct: 605 GKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPF 664
Query: 830 QFLATCIELNEALKLDNPENFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRP 889
Q LA C+ L +ALK +P + ISH P+HQDG+CNGLQHYAALG D A VNLV ++P
Sbjct: 665 QCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKP 724
Query: 890 QDVYAFVAKLVTKRLENSAAAGDEQ---AAILKDLIS---RKVVKRTVMTNVYGVTFVGA 943
DVY+ +++ V + ++ ++ E AA+ K LI+ RK+VK+TVMT+VYGVT+VGA
Sbjct: 725 ADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGA 784
Query: 944 ADQIMKELDQYFDKPEESNELSR--YLAKHVFASIRELFHAAHLIQDWLGECAKKISKSV 1001
+QI + L++ +E + Y AK A++ E+F AA I WLG+CAK I+
Sbjct: 785 REQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDN 844
Query: 1002 RLDFDLNQSKTINSSDLMTSVIWTSPLGLPVVQPYRDLKKKQVQTNLQTVFITDPFAINP 1061
V W +PLGLPVVQPY ++ ++T+LQ + + N
Sbjct: 845 H------------------PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREG--NT 884
Query: 1062 INPRRQQAGLPPNFIHSLDASHMLLSAIQCGKAGLDFAAVHDSYWTHASEVDNMNRLLRQ 1121
++ R+Q+ PPNF+HSLD +HM+++A+ C +AGL+FA VHDSYWTHA +VD MNR+LR+
Sbjct: 885 VDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILRE 944
Query: 1122 EFIKLHEVDLIERLKNEFDERY 1143
+F++L+ ++E L F E Y
Sbjct: 945 KFVELYNTPILEDLLQSFQESY 966
>At1g68990 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 976
Score = 492 bits (1266), Expect = e-138
Identities = 285/789 (36%), Positives = 440/789 (55%), Gaps = 78/789 (9%)
Query: 402 KQNSDRLKYGPYLLLVEPEKMCVITILELLKLQSSGGVTEGM-RTARAVLSVGRSIEMEF 460
K ++ Y P++ + +KM VIT+ +++ L + G+ + A +G ++E E
Sbjct: 196 KIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGEAVEQEV 255
Query: 461 RSEKLLRSENK-------------------MFKEVNKRSHEFKMFVQNAKT----ALRNM 497
R L+ +NK + KE K + + ++ K AL
Sbjct: 256 RINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQVKALVRK 315
Query: 498 HVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVVGEA---PAFCHTFQY 554
H ++ W + + K+G+ LI +L+ + + P ++ G PAF F+
Sbjct: 316 H--DSFKPWGQEAQVKVGARLIQLLMENAYI-----QPPAEQFDDGPPDIRPAFKQNFRT 368
Query: 555 ------RSGTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVRPRPWTNWNSGGYNYSQ 608
++ + G ++ ++ L ++ ++ +LPML+ P+ WT ++ G + +
Sbjct: 369 VTLENTKTSRRYGCIECDPLVLKGL--DKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLP 426
Query: 609 STLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIVSEVWNTGEGF 668
S ++R+ + +Q +K ++ ++ VYE L+ LGNT W IN+K+ ++V +W G
Sbjct: 427 SYVMRTHGAKQQRTVMKRTPKE-QLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGR- 484
Query: 669 LDIPPVLDNFEFP-PQPARSEDPLILKEWRNKCRQMSNEFKGFKSYRCDSNYKLEIARAF 727
I ++D + P P+ ED K WR + ++ + S RCD KLE+AR
Sbjct: 485 --IGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKM 542
Query: 728 LGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWLKIHLANL 786
E+ FY+PHN+DFRGRAYP+ P+ NHLG+D+ R +L F GK LG SGL+WLKIH+ANL
Sbjct: 543 KDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANL 602
Query: 787 Y--GMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIELNEALKL 844
Y G+DK ++E+R+ F ++HL++I +S++ PL+G RWW A+ P+Q LA CI L+EAL+
Sbjct: 603 YAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRS 662
Query: 845 DNPENFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTKRL 904
PE ISH P+HQDG+CNGLQHYAALG D GA VNLV ++P DVY +A V K +
Sbjct: 663 PFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIM 722
Query: 905 ENSAAAGDE------QAAILKDLISRKVVKRTVMTNVYGVTFVGAADQIMKELDQ--YFD 956
+ A E A ++ D + RK+VK+TVMT+VYGVT+ GA DQI K L + F+
Sbjct: 723 QQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFE 782
Query: 957 KPEESNELSRYLAKHVFASIRELFHAAHLIQDWLGECAKKISKSVRLDFDLNQSKTINSS 1016
+ S Y AK ++ E+F AA I+ W G+CAK I+
Sbjct: 783 DDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASE---------------- 826
Query: 1017 DLMTSVIWTSPLGLPVVQPYRDLKKKQVQTNLQTVFITDPFAINPINPRRQQAGLPPNFI 1076
+V WT+PLGLPVVQPYR + V+T LQ + ++ + + RRQ PNFI
Sbjct: 827 --NNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSR--ETDKVMARRQMTAFAPNFI 882
Query: 1077 HSLDASHMLLSAIQCGKAGLDFAAVHDSYWTHASEVDNMNRLLRQEFIKLHEVDLIERLK 1136
HSLD SHM+++A+ C +AGL FA VHDS+WTHA +VD MN +LR++F++L+E ++E L
Sbjct: 883 HSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLL 942
Query: 1137 NEFDERYRD 1145
F + + D
Sbjct: 943 ESFQKSFPD 951
>Hs14790138 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 1230
Score = 452 bits (1163), Expect = e-126
Identities = 278/775 (35%), Positives = 410/775 (52%), Gaps = 41/775 (5%)
Query: 385 EVALCQDLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKLQSSGGVTEGMR 444
E ALC+ L E + + + R P+L L++ E+ V +L++L+ + G E
Sbjct: 442 EKALCRALRETKNRLEREVYEGRFSLYPFLCLLD-EREVVRMLLQVLQALPAQG--ESFT 498
Query: 445 TARAVLSVGRSIEMEFRSEKLLRSENKMFKEVNKRSHEFKMFVQNAKTALRNMHVEE--- 501
T LS + +++ + K + + L + EE
Sbjct: 499 TLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEELGA 558
Query: 502 ----NMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVVGEAPAFCHTFQYRSG 557
WP V+ ++G +L ML+ +++ P ++V P H + +R+
Sbjct: 559 PEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLV---PVLYHVYSFRNV 615
Query: 558 TKIGILKIHRSLVNQLS-AERMTTNIQPQHLPMLVRPRPWTNWNSGGYNYSQSTLIRSRD 616
+IGILK H + V L A T + +PML P PWT+ +SG + S + L+R+ +
Sbjct: 616 QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVE 675
Query: 617 SPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIVSEVWNT-GEGFLDIPPVL 675
Q + ++ + L LGN W +N ++ ++V +++ G L +P
Sbjct: 676 GATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPP 735
Query: 676 DNFEFPPQP--ARSEDPLILKEWRNKCRQMSNEFKGFKSYRCDSNYKLEIARAFLGEKFY 733
PP+ S P E R + + S R ++ Y+L +A+ F+
Sbjct: 736 SEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRVFW 795
Query: 734 FPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWLKIHLANLYGMDKCS 793
PHNMDFRGR YP PHFNHLG+D+ R+LL F G+ LG GL WLKIHL NL G+ K
Sbjct: 796 LPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKRE 855
Query: 794 -FEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIELNEALKLDNPENFIS 852
+R+ FA+ + +I +SA+ PL G +WW A++PWQ LA C+E+ A++ +P ++S
Sbjct: 856 PLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVS 915
Query: 853 HQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTKRLENSAAAGD 912
H PVHQDG+CNGLQHYAALG D GA VNL PSD PQDVY+ VA V A G
Sbjct: 916 HLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM 975
Query: 913 EQAAILKDLISRKVVKRTVMTNVYGVTFVGAADQIMKELDQYFDKPEESN-ELSRYLAKH 971
A +L+ I+RKVVK+TVMT VYGVT G QI K L + D P+E E S YL +
Sbjct: 976 RVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQ 1035
Query: 972 VFASIRELFHAAHLIQDWLGECAKKISKSVRLDFDLNQSKTINSSDLMTSVI-WTSPLGL 1030
VF S++E+F IQ WL E A+ IS M SV+ W +PLG+
Sbjct: 1036 VFKSLQEMFSGTRAIQHWLTESARLISH-------------------MGSVVEWVTPLGV 1076
Query: 1031 PVVQPYR-DLKKKQVQTNLQTVFITDPFAIN-PINPRRQQAGLPPNFIHSLDASHMLLSA 1088
PV+QPYR D K KQ+ +Q++ T I+ N R+Q+ G PPNFIHSLD+SHM+L+A
Sbjct: 1077 PVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTA 1136
Query: 1089 IQCGKAGLDFAAVHDSYWTHASEVDNMNRLLRQEFIKLHEVDLIERLKNEFDERY 1143
+ C + GL F +VHD YWTHA++V MN++ R++F++LH +++ L +R+
Sbjct: 1137 LHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 1191
>7296127 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 1369
Score = 423 bits (1088), Expect = e-118
Identities = 268/770 (34%), Positives = 405/770 (51%), Gaps = 58/770 (7%)
Query: 408 LKYGPYLLLVEPEKMCVITILELLKLQSSGGVTEGMRTARAVLSVGRSIEMEFRSEKLLR 467
+ Y YL ++ I I EL KL + G T + +G+ ++ ++ E+ +
Sbjct: 577 MNYYTYLKTLDASHFADILIKELYKL-AEGSETFSPTVGQLYKELGQKVQQRYQIEQ--K 633
Query: 468 SENKMFKEVNKRSHEF------KMFVQNAKTALRNMHVEENM---------IQWPSDVKA 512
N +++ + + M N + A + + E+ + WPS+V
Sbjct: 634 KHNGTLEKIGEIYSSYCELWGSGMSQDNTRQAWQRLVYEQRESGPSMDLLEVPWPSNVLT 693
Query: 513 KIGSILISMLIHVSKVTVEGVDPITKEKVVGEA----PAFCHTFQYRSGTKIGILKIHRS 568
+G L ++L+ K+ + +K K + PAF F+ + +K H
Sbjct: 694 GVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEEVKPHPV 753
Query: 569 LVNQLSAERMTTNIQPQHL-PMLVRPRPWTNWNSGGYNYSQSTLIR-SRDSPEQIAYIKA 626
L A R T +L PML P+PW+ ++GGY +++ LIR + +Q I A
Sbjct: 754 LSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKTELIRLPHQAIQQWDRIMA 813
Query: 627 VSEQGSIDNVYEGLNVLGNTPWTINEKLFNIVSEVW-NTGEGFLDIP-PVLDNFEFPPQP 684
+ Q + + LN L + PW +N +L +++ +V+ N G+ LD+P P P P
Sbjct: 814 SNPQ-HLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKLDVPQPPSSLPPLPTLP 872
Query: 685 AR--------SEDPLILKEWRNKCRQMSNEFKGFKSYRCDSNYKLEIARAFLGEKFYFPH 736
A+ SED K++R+K + + + + CD+ Y+L +A+ + + F+ PH
Sbjct: 873 AKDAEGNATSSEDRA--KQFRDKLGHRRKQAEMYSLW-CDALYRLSLAQHYRDKVFWLPH 929
Query: 737 NMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWLKIHLANLYGMDKC-SFE 795
NMDFRGR YP+ PH NHLG+D+ RS+LIF + LG GL WLK+H NL G+ K S
Sbjct: 930 NMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWLKLHCINLTGLKKRDSVR 989
Query: 796 ERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIELNEALKLDNPENFISHQP 855
ER+ +A+ + +I +SA++PL G WW+K+D+PWQ LA C+E+ + +P ++S P
Sbjct: 990 ERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANVHRCPDPAAYLSRFP 1049
Query: 856 VHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTKRLENSAAAGDEQA 915
+HQDG+CNGLQHYAALG D GAR VNL PS PQDVY+ VA LV K + A G A
Sbjct: 1050 IHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLHVA 1109
Query: 916 AILKDLISRKVVKRTVMTNVYGVTFVGAADQIMKELDQYFDKPEE-SNELSRYLAKHVFA 974
L + RKV+K+TVMT VYGVT GA QI ++L D P++ S YL F
Sbjct: 1110 EALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKDWVWPASTYLTTKTFE 1169
Query: 975 SIRELFHAAHLIQDWLGECAKKISKSVRLDFDLNQSKTINSSDLMTSVIWTSPLGLPVVQ 1034
S+RE+F + IQDW ECA+ I S +V W +PLGLPVVQ
Sbjct: 1170 SLREMFTSTREIQDWFTECARLI-----------------SGVCSQNVEWVTPLGLPVVQ 1212
Query: 1035 PYRDLKKKQVQTNLQTVFITDPFAI-NPINPRRQQAGLPPNFIHSLDASHMLLSAIQCGK 1093
PY + K + V P + N +Q+ PPNFIHSLD+SHM+L+++ C +
Sbjct: 1213 PYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCER 1272
Query: 1094 AGLDFAAVHDSYWTHASEVDNMNRLLRQEFIKLHEVDLIERLKNEFDERY 1143
G+ F +VHD +WTHA+ V +NR+ R++F+ LH ++E+L Y
Sbjct: 1273 QGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTY 1322
>CE25704 [KL] KOG1038 Mitochondrial/chloroplast DNA-directed RNA polymerase
RPO41 provides primers for DNA replication-initiation
Length = 1154
Score = 379 bits (972), Expect = e-104
Identities = 215/582 (36%), Positives = 324/582 (54%), Gaps = 47/582 (8%)
Query: 586 HLPMLVRPRPWTNWNSGG--YNYSQSTLIRSRDSPEQIAYIKA----VSEQGSIDNVYEG 639
+LPM+V PRPW + +GG Y SQ +IR + + ++ Q V++
Sbjct: 552 NLPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDA 611
Query: 640 LNVLGNTPWTINEKLFNIVSEVWNTGEGFLDIPPVLDNFEFPPQPARSEDPLILKEWRNK 699
LN LG+TPW INE + +++ +V+ G + +L+ E P + + P +E+
Sbjct: 612 LNQLGSTPWVINEPMLDVLKDVFGRS-GNSESRGLLEKLEIPMRHDTFDIPDFGREFGIG 670
Query: 700 CRQMSNEFKGFKSYR-----------------CDSNYKLEIARAFLGEKFYFPHNMDFRG 742
++ + + F+SY C Y++ +A F G+ +FPHNMDFRG
Sbjct: 671 IKKEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQTLFFPHNMDFRG 730
Query: 743 RAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWLKIHLANLYG-MDKCSFEERVEFA 801
R YPL+P+ +H+G+D+ R +L F +KLG G WLK+H NL G M + S +R+ A
Sbjct: 731 RVYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINLTGTMKRSSVADRMVEA 790
Query: 802 DTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIELNEALKLDNPEN-FISHQPVHQDG 860
+ + + +SA PL+G +WW +D+PWQ LA C+E+ A + + F S P+HQDG
Sbjct: 791 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDG 850
Query: 861 TCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTKRLENSAAAGDEQAAILKD 920
+CNGLQHYAALG D EG QVNL SD P DVY+ VA+ V ++ + + E + +
Sbjct: 851 SCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARK 910
Query: 921 L-------ISRKVVKRTVMTNVYGVTFVGAADQIMKELDQYFDKPEESNELSRYLAKHVF 973
L + RKV+K+TVMT VYGVT GA QI ++L E++ +RYLA+ F
Sbjct: 911 LREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFARYLARKTF 970
Query: 974 ASIREL-FHAAHLIQDWLGECAKKISKSVRLDFDLNQSKTINSSDLMTSVIWTSPLGLPV 1032
AS+ + A +L + + S+ L D + SSDLM +V W +PLGLPV
Sbjct: 971 ASLNDAAIFARYLARKTFASLNDAFTSSMALK-DWFRLIAKGSSDLMKTVEWITPLGLPV 1029
Query: 1033 VQPYRDLKKKQVQTNLQTVFITDPFAINPINPRRQQAGLPPNFIHSLDASHMLLSAIQCG 1092
VQPY L +++ + L V P +Q PPNF+HSLD++HM+L+++ C
Sbjct: 1030 VQPYCKLVERKGKLILAPV------------PMKQVDAFPPNFVHSLDSTHMMLTSLNCA 1077
Query: 1093 KAGLDFAAVHDSYWTHASEVDNMNRLLRQEFIKLHEVDLIER 1134
+ G+ FAAVHD +WTHA+ VD MN + RQ+F+ LH ++E+
Sbjct: 1078 QRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQ 1119
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,481,771
Number of Sequences: 60738
Number of extensions: 3208047
Number of successful extensions: 9268
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9191
Number of HSP's gapped (non-prelim): 16
length of query: 1263
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1145
effective length of database: 23,222,132
effective search space: 26589341140
effective search space used: 26589341140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)