ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1390 good U KOG3372 Intracellular trafficking, secretion, and vesicular transport Signal peptidase complex subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1390 466109 466675 189
(189 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR066w [U] KOG3372 Signal peptidase complex subunit 159 2e-39
7301130 [U] KOG3372 Signal peptidase complex subunit 76 2e-14
SPAC56F8.11 [U] KOG3372 Signal peptidase complex subunit 76 3e-14
At5g27430 [U] KOG3372 Signal peptidase complex subunit 74 9e-14
At3g05230 [U] KOG3372 Signal peptidase complex subunit 74 1e-13
CE00269 [U] KOG3372 Signal peptidase complex subunit 70 2e-12
Hs11345462 [U] KOG3372 Signal peptidase complex subunit 68 7e-12
>YLR066w [U] KOG3372 Signal peptidase complex subunit
Length = 184
Score = 159 bits (402), Expect = 2e-39
Identities = 75/181 (41%), Positives = 113/181 (61%), Gaps = 3/181 (1%)
Query: 1 MFSLNQRFQHVSSLALSCSFLVIALIAATSWLQLVKDNVFELESQLSHIRSATRFAKQKR 60
MFS QRFQ+VS+ A S +++ I A+S+ QL+ +N F + S + ++++ +
Sbjct: 1 MFSFVQRFQNVSNQAFSMGIVMVVFIMASSYYQLINNNAFSVPSNIDNVKTLINVRTSRY 60
Query: 61 YGGSAVNPTEVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKII 120
+G E KI+F+ + D + LFNWNTKQVF Y+TAEY E +E+T WDKII
Sbjct: 61 FGSQRGKAKENMKIKFDLNTDLTPLFNWNTKQVFVYLTAEYNSTEK--ITSEVTFWDKII 118
Query: 121 PSRDNATFTLSDIDAKYQLWDLE-SKITERPLTFKLHWNIQPWFGFLINGETTGSKTIEL 179
S+D+A ++D+ +KY +WD+E K + L FKLHWN+QPW G L GET G+ T+ +
Sbjct: 119 KSKDDAVIDVNDLRSKYSIWDIEDGKFEGKDLVFKLHWNVQPWVGLLTYGETVGNYTLTV 178
Query: 180 K 180
+
Sbjct: 179 E 179
>7301130 [U] KOG3372 Signal peptidase complex subunit
Length = 179
Score = 76.3 bits (186), Expect = 2e-14
Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 3/112 (2%)
Query: 63 GSAVNPTEVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPS 122
G++ ++ + F+ + + +FNWN KQ+F Y+TAEY+ N +N++ +WDKII
Sbjct: 55 GASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPAN--QLNQVVLWDKIILR 112
Query: 123 RDNATFTLSDIDAKYQLWDLESKITE-RPLTFKLHWNIQPWFGFLINGETTG 173
DNA +++ KY WD + + + R ++ L WNI P G L + + TG
Sbjct: 113 GDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNIIPNAGLLPSVQATG 164
>SPAC56F8.11 [U] KOG3372 Signal peptidase complex subunit
Length = 185
Score = 75.9 bits (185), Expect = 3e-14
Identities = 40/122 (32%), Positives = 66/122 (53%), Gaps = 7/122 (5%)
Query: 70 EVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPSRDNATF- 128
+ ++++FN D D S L++WNTK V Y+ A Y ++ H N++ +WDKI+ S + +
Sbjct: 67 QYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEK--HEKNQVVVWDKILSSPEESKMF 124
Query: 129 ---TLSDIDAKYQLWDLESKITERPLTFKLHWNIQPWFGFLINGETTGSKTIELKKPVDK 185
TLS+I A + + ++ + T+ LHW + P GFL G GS I K + +
Sbjct: 125 MKDTLSNIQA-HPFNEYSNQFEGKNATYTLHWTVSPKMGFLSWGAGPGSYEIPFHKIITQ 183
Query: 186 QK 187
K
Sbjct: 184 PK 185
>At5g27430 [U] KOG3372 Signal peptidase complex subunit
Length = 167
Score = 74.3 bits (181), Expect = 9e-14
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 70 EVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPSRDNATFT 129
EVS + N D LF WNTKQVFA+V AEYE +N +N++++WD IIP +++A F
Sbjct: 58 EVS-LTLNITADLQSLFTWNTKQVFAFVAAEYETSKN--ALNQVSLWDAIIPEKEHAKFW 114
Query: 130 LSDIDAKYQLWDLESKITERPLTFKLHWNIQPWFG 164
+ I KY+ D + + LHW++ P G
Sbjct: 115 I-QISNKYRFIDQGHNLRGKDFNLTLHWHVMPKTG 148
>At3g05230 [U] KOG3372 Signal peptidase complex subunit
Length = 167
Score = 73.9 bits (180), Expect = 1e-13
Identities = 40/116 (34%), Positives = 63/116 (53%), Gaps = 10/116 (8%)
Query: 49 IRSATRFAKQKRYGGSAVNPTEVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPH 108
I + RF KQ +G V+ T + D LF WNTKQVF +V AEYE +N
Sbjct: 43 ILNINRFKKQS-HGNDEVSLT------LDISADLQSLFTWNTKQVFVFVAAEYETPKN-- 93
Query: 109 TMNEITIWDKIIPSRDNATFTLSDIDAKYQLWDLESKITERPLTFKLHWNIQPWFG 164
++N++++WD IIP++++A F + + KY+ D + + LHW++ P G
Sbjct: 94 SLNQVSLWDAIIPAKEHAKFRI-QVSNKYRFIDQGQNLRGKDFNLTLHWHVMPKTG 148
>CE00269 [U] KOG3372 Signal peptidase complex subunit
Length = 180
Score = 70.1 bits (170), Expect = 2e-12
Identities = 33/98 (33%), Positives = 57/98 (57%), Gaps = 3/98 (3%)
Query: 70 EVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPSRDNATFT 129
+++ + FN DFS++FNWN KQ+F Y+ AEY+ N +N++ +WD+I+ D
Sbjct: 62 DLATLNFNLKVDFSKIFNWNVKQLFVYLVAEYKSKVN--EVNQVVLWDRIVERADRVVMD 119
Query: 130 LSDIDAKYQ-LWDLESKITERPLTFKLHWNIQPWFGFL 166
+ +KY L D + + + +TF L +N+ P G+L
Sbjct: 120 EIGVKSKYYFLDDGTNLLNHKNVTFVLRYNVIPNSGYL 157
>Hs11345462 [U] KOG3372 Signal peptidase complex subunit
Length = 180
Score = 68.2 bits (165), Expect = 7e-12
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 69 TEVSKIRFNADFDFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPSRDNATF 128
+++ I F+ D +F+WN KQ+F Y++AEY N +N++ +WDKI+ DN
Sbjct: 61 SDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNN--ALNQVVLWDKIVLRGDNPKL 118
Query: 129 TLSDIDAKYQLWDLESKIT-ERPLTFKLHWNIQPWFGFL 166
L D+ KY +D + + R +T L WN+ P G L
Sbjct: 119 LLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGIL 157
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,043,604
Number of Sequences: 60738
Number of extensions: 430935
Number of successful extensions: 937
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 7
length of query: 189
length of database: 30,389,216
effective HSP length: 100
effective length of query: 89
effective length of database: 24,315,416
effective search space: 2164072024
effective search space used: 2164072024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)