ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1437 good A KOG3408 RNA processing and modification U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1437 487382 486882 -167
(167 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR074c [A] KOG3408 U1-like Zn-finger-containing protein probabl... 220 8e-58
SPAC19B12.11c [A] KOG3408 U1-like Zn-finger-containing protein p... 94 7e-20
7290735 [A] KOG3408 U1-like Zn-finger-containing protein probabl... 87 8e-18
CE22586 [A] KOG3408 U1-like Zn-finger-containing protein probabl... 86 3e-17
Hs7705662 [A] KOG3408 U1-like Zn-finger-containing protein proba... 70 1e-12
ECU02g0310 [A] KOG3408 U1-like Zn-finger-containing protein prob... 60 1e-09
At2g36930 [A] KOG3408 U1-like Zn-finger-containing protein proba... 55 4e-08
>YLR074c [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 166
Score = 220 bits (560), Expect = 8e-58
Identities = 101/143 (70%), Positives = 122/143 (84%)
Query: 1 MGRYSVKRYKTKRRTKDLDLIYEELTSQKQIDSLLNQPIDETKPGLGQYYCIHCAKYFET 60
MGRYSVKRYKTKRRT+DLDLIY +L++++ + LLNQP+DETKPGLGQ+YCIHCAKY ET
Sbjct: 1 MGRYSVKRYKTKRRTRDLDLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYMET 60
Query: 61 AYALKTHLKTKIHKRRVKELKGVPYTQQVADAAVGCGVNSFLARVEQIKSQIGPQKEENE 120
A ALKTHLK K+HKRRVKEL+GVPYTQ+V+DAA G +N FL RV++I +GP+KE NE
Sbjct: 61 AIALKTHLKGKVHKRRVKELRGVPYTQEVSDAAAGYNLNKFLNRVQEITQSVGPEKESNE 120
Query: 121 KILTSHLDTTLANVSTTESTLPY 143
+L HLD+TLANV TTE TLP+
Sbjct: 121 ALLKEHLDSTLANVKTTEPTLPW 143
>SPAC19B12.11c [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 124
Score = 94.4 bits (233), Expect = 7e-20
Identities = 49/107 (45%), Positives = 68/107 (62%), Gaps = 13/107 (12%)
Query: 1 MGRYSVKR----------YKTKRRTKDLDLIYEELTSQKQIDSLLNQPIDETKPGLGQYY 50
MGR + KR ++T+ +DLD I+ +LT ++ D L PID PGLGQ+Y
Sbjct: 1 MGRVARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKFDKL---PIDPDLPGLGQHY 57
Query: 51 CIHCAKYFETAYALKTHLKTKIHKRRVKELKGVPYTQQVADAAVGCG 97
CI CA+YF+++ AL H K K+HKRR+K L+ PYTQ+ A+AAV G
Sbjct: 58 CIECARYFDSSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIG 104
>7290735 [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 162
Score = 87.4 bits (215), Expect = 8e-18
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 5/112 (4%)
Query: 7 KRYKTKRRTKDLDLIYEELTSQKQIDSLLNQPIDETKPGLGQYYCIHCAKYFETAYALKT 66
+R++ + R +DLD I ++L Q + L+NQ +D KPG Q+YC+HCAKYF A++
Sbjct: 19 RRWRVRNRRRDLDQIDDDL--QTRSGELINQNVDLDKPGFAQFYCVHCAKYFIDDTAMQA 76
Query: 67 HLKTKIHKRRVKELKGVPYTQQVADAAVGCGVNSFLARVEQIKSQIGPQKEE 118
H +TK+HKRR+K L+ PY+ + A+ A G G SF+ + ++ + P KE+
Sbjct: 77 HFRTKVHKRRLKALEIEPYSIEEAERAAGRG--SFV-KPKKRAMETQPSKED 125
>CE22586 [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 128
Score = 85.5 bits (210), Expect = 3e-17
Identities = 45/95 (47%), Positives = 58/95 (60%), Gaps = 1/95 (1%)
Query: 3 RYSVKRYKTKRRTKDLDLIYEELTSQKQIDSLLNQPIDETKPGLGQYYCIHCAKYFETAY 62
++++ KR KDLD I+E+L +K LL Q ID PG GQ+YCI C ++F
Sbjct: 8 KHTISNKTRKRPGKDLDQIHEDLKPEKAA-KLLQQEIDYDLPGNGQFYCIECERHFVDEK 66
Query: 63 ALKTHLKTKIHKRRVKELKGVPYTQQVADAAVGCG 97
+ H KTK+HK RVK LK VPYTQ A+AA G G
Sbjct: 67 TRQLHRKTKLHKNRVKTLKEVPYTQAEANAAGGSG 101
>Hs7705662 [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 116
Score = 70.1 bits (170), Expect = 1e-12
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 10 KTKRRTKDLDLIYEELTSQ----KQIDSLLNQPIDETKPGLGQYYCIHCAKYFETAYALK 65
K KRR DLD I+ EL Q Q D N D PG G + C+ CA+YF + LK
Sbjct: 2 KAKRRRPDLDEIHRELRPQGSARPQPDP--NAEFDPDLPGGGLHRCLACARYFIDSTNLK 59
Query: 66 THLKTKIHKRRVKELKGVPYTQQVADAAVGCG 97
TH ++K HK+R+K+L PY+Q+ A+ A G G
Sbjct: 60 THFRSKDHKKRLKQLSVEPYSQEEAERAAGMG 91
>ECU02g0310 [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 104
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/80 (37%), Positives = 48/80 (59%), Gaps = 6/80 (7%)
Query: 16 KDLDLIYEELTSQKQIDSLLNQPIDETKPGLGQYYCIHCAKYFETAYALKTHLKTKIHKR 75
KD+D + E++ SQK+I+ D PG G +YC C ++F T L H ++ H+R
Sbjct: 29 KDIDQVKEDIESQKKIE------YDPELPGGGHFYCCECDRHFITEKVLMEHKRSNPHRR 82
Query: 76 RVKELKGVPYTQQVADAAVG 95
R KE++ V ++Q+ A+ AVG
Sbjct: 83 RAKEVREVAHSQRDAEWAVG 102
>At2g36930 [A] KOG3408 U1-like Zn-finger-containing protein probabl erole in
RNA processing/splicing
Length = 144
Score = 55.1 bits (131), Expect = 4e-08
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 35 LNQPIDETKPGLGQYYCIHCAKYFETAYALKTHLKTKIHKRRVKEL-KGVPYTQQVADAA 93
L +P E PG+GQ+ C+ C + F A + H KTK HK+RVK++ + P++Q AD A
Sbjct: 70 LRKPETEDLPGMGQFNCLLCHRNFSNASVMDYHFKTKKHKKRVKKIERPAPHSQLDADLA 129
Query: 94 VGCGV 98
G G+
Sbjct: 130 GGMGM 134
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/54 (44%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Query: 46 LGQYYCIHCAKYFETAYALKTHLKTKIHKRRVKELKG-VPYTQQVADAAVGCGV 98
+GQ+YC+HC +YF H KTK HK+RV + G P++Q AD A G G+
Sbjct: 1 MGQFYCLHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGMGM 54
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,174,380
Number of Sequences: 60738
Number of extensions: 314338
Number of successful extensions: 3279
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3267
Number of HSP's gapped (non-prelim): 8
length of query: 167
length of database: 30,389,216
effective HSP length: 98
effective length of query: 69
effective length of database: 24,436,892
effective search space: 1686145548
effective search space used: 1686145548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)