ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV1475   suspect: LH   T     KOG1453  Signal transduction mechanisms                                 Chimaerin and related Rho GTPase activating proteins

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1475 501472 499412 -687 
         (687 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs5902012_2 [T] KOG1453 Chimaerin and related Rho GTPase activat...    52   2e-06

>Hs5902012_2 [T] KOG1453 Chimaerin and related Rho GTPase activating proteins
          Length = 1223

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 51/198 (25%), Positives = 102/198 (50%), Gaps = 32/198 (16%)

Query: 451 YNPG-SYQTFGIDLETRCRSDNRLVPLILSAILLYMDQAYPEMENDYKRAIVWTKPVKLH 509
           Y+P  S + FG++L +R  S++R VPL++  ++ Y+     EM   Y   I + K    +
Sbjct: 727 YDPELSSRQFGVEL-SRLTSEDRTVPLVVEKLINYI-----EMHGLYTEGI-YRKSGSTN 779

Query: 510 EVHQLRQLLIKPFKEESEIIEILRSKKVEPSTVASVFKIYLLELPKSLITEDAYDILKVL 569
           ++ +LRQ L      ++E + +          +ASVFK +L +LP  L+T +       L
Sbjct: 780 KIKELRQGL----DTDAESVNL---DDYNIHVIASVFKQWLRDLPNPLMTFE-------L 825

Query: 570 YREYPPSDIKEETENQRVRGLTTALSTLSKSNMVTLDVITTHFERLIEIIRMNKSEESQE 629
           Y E+  +   +E   + +RG+ + +  LS++++ TL+ +  H      ++R+   E++  
Sbjct: 826 YEEFLRAMGLQE-RKETIRGVYSVIDQLSRTHLNTLERLIFH------LVRIALQEDTNR 878

Query: 630 LAENLRDAISQEFANCLI 647
           ++ N   A++  FA C++
Sbjct: 879 MSAN---ALAIVFAPCIL 893


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,765,763
Number of Sequences: 60738
Number of extensions: 1760770
Number of successful extensions: 5330
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5328
Number of HSP's gapped (non-prelim): 1
length of query: 687
length of database: 30,389,216
effective HSP length: 113
effective length of query: 574
effective length of database: 23,525,822
effective search space: 13503821828
effective search space used: 13503821828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)