ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV1481   suspect: LH   U     KOG3838  Intracellular trafficking, secretion, and vesicular transport  Mannose lectin ERGIC-53, involved in glycoprotein traffic

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1481 502506  503816 437  
         (437 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7295074 [U] KOG3838 Mannose lectin ERGIC-53 involved in glycopro...    54   4e-07

>7295074 [U] KOG3838 Mannose lectin ERGIC-53 involved in glycoprotein
           traffic
          Length = 512

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 52/218 (23%), Positives = 84/218 (37%), Gaps = 33/218 (15%)

Query: 44  PDLVHMNAVPSDWKTSXXXXXXXXXXXXTPSASSQS-SIWHKTDYQIKDSFTIEWTFRSV 102
           P L   +     W+               PS  SQ  +IW K+     D + +E  FR  
Sbjct: 44  PYLAQKDGTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNF-DWWDVEIVFRVT 102

Query: 103 DFIGKSEGGLSFWLVEGKSAGGTSLFGGPEAFDGLQILVDS----NGPVGSSVRGILNDG 158
                   GL+FW    K      +FG  + ++GL I+ DS    N      +  +LNDG
Sbjct: 103 GRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKHNNPYISAVLNDG 162

Query: 159 SKKLTEKNVYDHS-------FAYCLLAYQDTTIPTTIRLSYDRKNNNLLKLQVDN----- 206
           +K      +YDH+        + CL  +++   PT  R+ Y    NN+L + + N     
Sbjct: 163 TK------LYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEY---YNNVLTVMIHNGMSNN 213

Query: 207 ----RVCFQTRQIQFPQNAKMKMGITAKNDANKESFEV 240
                +C +   +  P+N     GI+A      +  +V
Sbjct: 214 NDDYELCLRADGVNLPKNG--YFGISAATGGLADDHDV 249


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,830,017
Number of Sequences: 60738
Number of extensions: 995069
Number of successful extensions: 2713
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2712
Number of HSP's gapped (non-prelim): 2
length of query: 437
length of database: 30,389,216
effective HSP length: 109
effective length of query: 328
effective length of database: 23,768,774
effective search space: 7796157872
effective search space used: 7796157872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)