ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1665 good R KOG1963 General function prediction only WD40 repeat protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1665 576844 574292 -851
(851 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL126w [R] KOG1963 WD40 repeat protein 831 0.0
SPAC1B3.13 [R] KOG1963 WD40 repeat protein 77 1e-13
At2g18900 [R] KOG1963 WD40 repeat protein 53 2e-06
>YPL126w [R] KOG1963 WD40 repeat protein
Length = 896
Score = 831 bits (2147), Expect = 0.0
Identities = 439/895 (49%), Positives = 592/895 (66%), Gaps = 54/895 (6%)
Query: 6 LPMYKLSVVSGGKVALPRIHNRSATRKSVSCLTQDGSAYIVPFNNQFKVYSIDTRQCIKT 65
+ YKLSVVSGGK AL + + + K+++ L+QD YI+PFNNQ KVYS++TRQC+KT
Sbjct: 7 IEQYKLSVVSGGKPALNNLSSVTGN-KNIARLSQDQRNYIIPFNNQIKVYSVETRQCVKT 65
Query: 66 LKFANNDILTSIL------DEPSVEVVHIEPIIDDEMDK--IRVYTNTAKVVILKYKGKL 117
LKFANN +L+ I +E V+++ + + + D I V+TN V++L YKGKL
Sbjct: 66 LKFANNSLLSGIFLQEEENNESIVKILLGDITVPQQEDAHLITVFTNNGHVIVLNYKGKL 125
Query: 118 ATEIKTWSLNITGELFAVLGDGK---KLLTV-----QKTGNSYR-YDLYXXXXXXXXXXX 168
K + +++ E A + + ++LT QK NS + Y LY
Sbjct: 126 VESPKHFKISLADEKLANVFHSEGNYRILTTFKDPSQKAHNSLQSYRLYALTFDDAKKQF 185
Query: 169 XXXXXT-FENVLLSTWSXXXXXXXXXXXXQETKKH----VLIKSMVDNSSVQNFPVPSTT 223
+ NV+LS S TK H + + S+ D+S +FP+ S
Sbjct: 186 EVAHQAEWHNVILSNISSNGKLLAHMCKDVSTKDHEHKSISVVSLFDDSVNLSFPLGSIL 245
Query: 224 SSTT----INSHFVTALALDNDGQQLAIGFASGVINLINLPDLSHRLLKWHIDSVLSLGF 279
SS T N+ +V+++A+DN GQQLA+GFASGVI++++L DL RLLKWHIDSVLSL F
Sbjct: 246 SSQTQSLSYNTRYVSSMAIDNMGQQLAVGFASGVISIVSLADLQIRLLKWHIDSVLSLSF 305
Query: 280 TNDNAYLLSGGWEKVLSFWQLATNMQHFLPRLNGVVLEC--LPVSDKYYSLVLQFAENNT 337
++D +YLLSGGWEKV+S WQL TN Q FLPRLNG++++C L YYSL+LQ ENN+
Sbjct: 306 SHDGSYLLSGGWEKVMSLWQLETNSQQFLPRLNGIIIDCQVLGPQGNYYSLILQMTENNS 365
Query: 338 NSDYQITLLNATDLSSILAINGPFPVFDTITNDVEQPIXXXXXXXXXXXXXMLQSXXXXX 397
NSDYQ LLNA+DL+S L+INGP PVF++ ++QPI + S
Sbjct: 366 NSDYQFLLLNASDLTSKLSINGPLPVFNSTIKHIQQPISAMNTKNSNSITSLNHSKKKQS 425
Query: 398 XXXXXXXXHDFTAPLSVHPSTKHLYLPHVSSLQSYDLYKNEQVSYQYVTSSVNNAAGKVR 457
DFT + ++P K+LY PH+S++Q +D YKNEQV+YQY+TS VNN+ GKVR
Sbjct: 426 RKLIKSRRQDFTTNVEINPINKNLYFPHISAVQIFDFYKNEQVNYQYLTSGVNNSMGKVR 485
Query: 458 LELTIQDPVVQDVKFTLDGFWMITYEVEYPPEGLLSSKELSHVLKFWKLDDNK-EWELKT 516
EL +QDP++ D+KFT DG WMITYE+EYPP LLSSK+L+H+LKFW +DN+ W LKT
Sbjct: 486 FELNLQDPIITDLKFTKDGQWMITYEIEYPPNDLLSSKDLTHILKFWTKNDNETNWNLKT 545
Query: 517 KVLNPHGNNVPVTNITTAPNSINSSQGCLTADNNGGLKYWKFDSKQNNWCLNRLLLPNYN 576
KV+NPHG +VP+T I +P S+N+SQGCLTADNNGGLK+W FDS ++NWCL ++ LPN+N
Sbjct: 546 KVINPHGISVPITKILPSPRSVNNSQGCLTADNNGGLKFWSFDSHESNWCLKKISLPNFN 605
Query: 577 HFSNSVQLAWSLDGSLIFHAFEDKLSTIEFSEFKLLED-ENELPI-ERTLDTPIQALTLV 634
HFSNSV LAWS DGSLIFH F+DKL ++F FK E EN + E TLD+ IQ + L+
Sbjct: 606 HFSNSVSLAWSQDGSLIFHGFDDKLQILDFDTFKKFESLENTKTVSEFTLDSEIQTVKLI 665
Query: 635 NDSTLIISTKTSLHSFNLLTQSTISSFDIYPYVNGVYKPGHFARLLACDANTGRIALAIN 694
ND+ LI++T+T+L++ NLL I+SFD+YP+VNGVYK GH RL+ CD TG IAL IN
Sbjct: 666 NDTNLIVATRTTLNAINLLRGQVINSFDLYPFVNGVYKNGHMDRLITCDERTGNIALVIN 725
Query: 695 QQAAGTDGNPTLQHKANILIFNSDLTEKLGSFEHNEYISSLVWNYAADFIFMDIQSRLGI 754
QQ DG PT+ +K+ I+IF+SDL+ KLG+F H+EYIS + WNY DFIF+DI+S LG+
Sbjct: 726 QQLTDLDGVPTINYKSRIIIFDSDLSTKLGNFTHHEYISWIGWNYDTDFIFLDIESTLGV 785
Query: 755 VSTTTSSEMVDESNNDQAFESL----------HPDSFSEKLQEL--------TRKKGLAN 796
V TT ++++ DE NN+ + L + D F+E+L +L TR K N
Sbjct: 786 VGTTVNTQLSDEVNNEGILDGLVSNTITTSASNSDIFAEQLHKLSSRGKKSDTRDK---N 842
Query: 797 TDAEDGVDEDIDLEFINGNLSQNKTINMNSFTSLFENIDNVQMNTLFDRVMKIIT 851
T+ D +EDI LEFING ++K +NMNSFTS+F+NI NVQM+T FDRVMK++T
Sbjct: 843 TNDNDEDEEDIALEFINGE-KKDKLVNMNSFTSMFDNIQNVQMDTFFDRVMKVLT 896
>SPAC1B3.13 [R] KOG1963 WD40 repeat protein
Length = 800
Score = 76.6 bits (187), Expect = 1e-13
Identities = 107/454 (23%), Positives = 180/454 (39%), Gaps = 97/454 (21%)
Query: 242 GQQLAIGFASGVINLINLPDLSH-----RLLKWHIDSVLSLGFTNDNAYLLSGGWEKVLS 296
G A+ G I++IN D+S+ ++L WH + + L + + YLLSGG E VL
Sbjct: 230 GSACAVSDDEGKIHVIN--DISNEKFNPQILHWHANPLNGLSWALNGEYLLSGGQEGVLV 287
Query: 297 FWQLATNMQHFLPRLNGVVLECLPVSDKYYSLVLQFAENNTNSDYQITLLNATDLSSILA 356
WQ+ T+ + FLPRL +L + S S L +N+ + ++ A DL+ +
Sbjct: 288 LWQMETSHRQFLPRLGSSILS-IATSHDSDSYALHLGDNS------LVVIRAVDLAEQIH 340
Query: 357 INGPFPVFDTITNDVEQPIXXXXXXXXXXXXXMLQSXXXXXXXXXXXXXHDFTAPLSVHP 416
++G N E L S F+ SV P
Sbjct: 341 VSG--------INSFE--------------SKYLTSTGPKNTSKQLQGLVQFS---SVSP 375
Query: 417 STKHLYLP------HVSSLQSYDLYKN------EQVSYQYVTSSVNNAAGKVRLELTIQD 464
+ + L + H S+Q YDL K+ E Y Y + S N+ ++ +
Sbjct: 376 NGELLLMSSSSFNGHSVSVQEYDLTKDSTIRKFEAARYSYSSVSKNSDDA-----TSLDN 430
Query: 465 PVVQDVKFTLDGFWMITYEVEYPPEGLLSSKELS---HVLKFWKLDD-NKEWELKTKVLN 520
V V T + ++ ++ ++ + LKFW+ D K W L T++ N
Sbjct: 431 GHVGSVAVTSSRNGLYIATIDTWCTNIIDEQQRNVKQTALKFWQFDSVQKTWVLMTRIDN 490
Query: 521 PHGNNVPVTNITTAPNSINSSQGCLTADNNGGLKYWKFDSKQNNW-CLNRLLLPNYNHFS 579
PHGN + TA + SS +T + L+ W + W C+ +HF+
Sbjct: 491 PHGN----LEVVTALKMMTSSNRFITVGTDATLRIWALLPGSSAWKCV------AIHHFA 540
Query: 580 N-------------SVQLAWSLDGSLIFHAFEDKLSTIEFSEFKLLEDENELPIERTLDT 626
N S L SLD S+I + S + F + LE+ + T+D
Sbjct: 541 NTHSQASIKQRYGFSKALTCSLDDSIIGFGYG---SCMHFINSETLEEIS------TVDL 591
Query: 627 P----IQALTLVNDSTLIISTKTSLHSFNLLTQS 656
P ++ +N +I ++ L +N+++ S
Sbjct: 592 PHGGQLENAQFLNAEHCVIISQRRLLVWNVISAS 625
>At2g18900 [R] KOG1963 WD40 repeat protein
Length = 812
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 269 WHIDSVLSLGFTNDNAYLLSGGWEKVLSFWQLATNMQHFLPRLNGVVLECLPVSDKYYSL 328
WH V L F++D AYL SGG E VL WQL T + FLPR+ +L + D S
Sbjct: 281 WHSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSS 340
Query: 329 VLQFAENNTNSDYQITLLNATDLSSILAINGPFP 362
V+ +D QI LL + + I+G P
Sbjct: 341 VV-------CADNQIHLLKMPSMEILRTISGIKP 367
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,681,121
Number of Sequences: 60738
Number of extensions: 2005754
Number of successful extensions: 6529
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6510
Number of HSP's gapped (non-prelim): 8
length of query: 851
length of database: 30,389,216
effective HSP length: 115
effective length of query: 736
effective length of database: 23,404,346
effective search space: 17225598656
effective search space used: 17225598656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)