ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1668 good K KOG3497 Transcription DNA-directed RNA polymerase, subunit RPB10
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1668 577334 577543 70
(70 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR210w [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 142 6e-35
SPAC1B3.12c [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 111 2e-25
Hs10863925 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 107 3e-24
CE26662 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 107 3e-24
7301195 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 105 1e-23
At1g61700 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 103 4e-23
ECU06g0320 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10 75 2e-14
>YOR210w [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 70
Score = 142 bits (359), Expect = 6e-35
Identities = 65/70 (92%), Positives = 70/70 (99%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MIVPVRCFSCGKVVGDKWE+YLN+LQE+EL+EGTAL+RLGLKRYCCRRMILTHVDLIEKF
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 61 LRYNPLEKRD 70
LRYNPLEKRD
Sbjct: 61 LRYNPLEKRD 70
>SPAC1B3.12c [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 71
Score = 111 bits (278), Expect = 2e-25
Identities = 50/69 (72%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MI+P+RCFSCGKV+GDKW+ YL +LQE+ E G AL +LGL+RYCCRRMILTHVDLIEK
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTE-GEALDKLGLQRYCCRRMILTHVDLIEKL 59
Query: 61 LRYNPLEKR 69
L YNPL K+
Sbjct: 60 LCYNPLSKQ 68
>Hs10863925 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 67
Score = 107 bits (267), Expect = 3e-24
Identities = 50/68 (73%), Positives = 56/68 (81%), Gaps = 1/68 (1%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MI+PVRCF+CGK+VG+KWEAYL +LQ E EG AL LGLKRYCCRRM+L HVDLIEK
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAE-YTEGDALDALGLKRYCCRRMLLAHVDLIEKL 59
Query: 61 LRYNPLEK 68
L Y PLEK
Sbjct: 60 LNYAPLEK 67
>CE26662 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 67
Score = 107 bits (267), Expect = 3e-24
Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MI+P+RCF+CGKV+GDKWE YL LQ E EG AL LGL+RYCCRRM+L HVDLIEK
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSE-YSEGDALDALGLRRYCCRRMLLAHVDLIEKL 59
Query: 61 LRYNPLEK 68
L Y+PLEK
Sbjct: 60 LNYHPLEK 67
>7301195 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 67
Score = 105 bits (261), Expect = 1e-23
Identities = 48/68 (70%), Positives = 56/68 (81%), Gaps = 1/68 (1%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MI+P+RCF+CGKV+G+KWE+YL +LQ E EG AL LGLKRYCCRRM+L HVDLIEK
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAE-YTEGDALDALGLKRYCCRRMLLGHVDLIEKL 59
Query: 61 LRYNPLEK 68
L Y PLEK
Sbjct: 60 LNYAPLEK 67
>At1g61700 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 71
Score = 103 bits (257), Expect = 4e-23
Identities = 47/70 (67%), Positives = 56/70 (79%), Gaps = 1/70 (1%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MIVPVRCF+CGKV+G+KW+ YL +LQ + EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQAD-YAEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
Query: 61 LRYNPLEKRD 70
L YN +EK D
Sbjct: 60 LNYNTMEKSD 69
>ECU06g0320 [K] KOG3497 DNA-directed RNA polymerase subunit RPB10
Length = 72
Score = 74.7 bits (182), Expect = 2e-14
Identities = 30/64 (46%), Positives = 47/64 (72%), Gaps = 1/64 (1%)
Query: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
MI+P+RCF+CGK + KWE Y +L+ ++ + AL LG++R CCRRM L HVD+++K
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDK-GKAEALDELGMRRICCRRMFLGHVDIVDKL 59
Query: 61 LRYN 64
L+++
Sbjct: 60 LKFD 63
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.327 0.144 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,527,224
Number of Sequences: 60738
Number of extensions: 150855
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 30,389,216
effective HSP length: 46
effective length of query: 24
effective length of database: 27,595,268
effective search space: 662286432
effective search space used: 662286432
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)