ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1739 good O KOG2540 Posttranslational modification, protein turnover, chaperones Cytochrome oxidase assembly factor COX11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1739 602441 601659 -261
(261 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL132w [O] KOG2540 Cytochrome oxidase assembly factor COX11 385 e-107
SPAC1420.04c_2 [O] KOG2540 Cytochrome oxidase assembly factor COX11 234 9e-62
Hs4758034 [O] KOG2540 Cytochrome oxidase assembly factor COX11 199 3e-51
At1g02410 [O] KOG2540 Cytochrome oxidase assembly factor COX11 187 1e-47
7296985_1 [O] KOG2540 Cytochrome oxidase assembly factor COX11 179 4e-45
CE17988 [O] KOG2540 Cytochrome oxidase assembly factor COX11 177 1e-44
>YPL132w [O] KOG2540 Cytochrome oxidase assembly factor COX11
Length = 300
Score = 385 bits (988), Expect = e-107
Identities = 183/217 (84%), Positives = 205/217 (94%)
Query: 41 FDLSKLTREEIKEIRDYKISAARRYKDRTVAFYFTSIAVLFLGLAYAAVPLYRAICARTG 100
FD+SKLTR EI+++R+ K + R++KDRTVAFYF+S+AVLFLGLAYAAVPLYRAICARTG
Sbjct: 56 FDISKLTRNEIQQLRELKRARERKFKDRTVAFYFSSVAVLFLGLAYAAVPLYRAICARTG 115
Query: 101 YGGIPITDKRKFTDDKLIPVDSNKRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAF 160
+GGIPITD+RKFTDDKLIPVD+ KRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAF
Sbjct: 116 FGGIPITDRRKFTDDKLIPVDTEKRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAF 175
Query: 161 YKAKNNSDKDIIGMATYSITPGESSPYFNKIQCFCFEEQKLAAGEEVDMPVFFFIDPDFA 220
YKAKN SDKDIIGMATYSI PGE++ YFNKIQCFCFEEQKLAAGEE+DMPVFFFIDPDFA
Sbjct: 176 YKAKNYSDKDIIGMATYSIAPGEAAQYFNKIQCFCFEEQKLAAGEEIDMPVFFFIDPDFA 235
Query: 221 SDPSMRNIDDIILHYTFFKAHYADGSAVSDAAAKPEV 257
SDP+MRNIDDIILHYTFF+AHY DG+AVSD+ +PE+
Sbjct: 236 SDPAMRNIDDIILHYTFFRAHYGDGTAVSDSKKEPEM 272
>SPAC1420.04c_2 [O] KOG2540 Cytochrome oxidase assembly factor COX11
Length = 198
Score = 234 bits (597), Expect = 9e-62
Identities = 104/178 (58%), Positives = 138/178 (77%)
Query: 65 YKDRTVAFYFTSIAVLFLGLAYAAVPLYRAICARTGYGGIPITDKRKFTDDKLIPVDSNK 124
Y RT +Y +I++ LGL YAAVPLYR C++TGYGG TD+ + ++++P NK
Sbjct: 10 YNQRTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGGTLNTDQSRMNAERMVPRKDNK 69
Query: 125 RIRISFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNNSDKDIIGMATYSITPGES 184
RIR++F +V+ L WK PQQRE+YVLPGETAL FY A+N SD DI+G+ATY+I PG++
Sbjct: 70 RIRVTFNGDVAGNLSWKLWPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQA 129
Query: 185 SPYFNKIQCFCFEEQKLAAGEEVDMPVFFFIDPDFASDPSMRNIDDIILHYTFFKAHY 242
+ YF+K+ CFCFEEQKL A E+VD+PVFFFIDP+FA DP+M++IDDI+L YTFF+A Y
Sbjct: 130 AVYFSKVACFCFEEQKLDAHEKVDLPVFFFIDPEFADDPNMKDIDDILLSYTFFEARY 187
>Hs4758034 [O] KOG2540 Cytochrome oxidase assembly factor COX11
Length = 276
Score = 199 bits (507), Expect = 3e-51
Identities = 97/178 (54%), Positives = 126/178 (70%), Gaps = 1/178 (0%)
Query: 63 RRYKDRTVAFYFTSIAVLFLGLAYAAVPLYRAICARTGYGGIPITDKRKFTDDKLIPVDS 122
RR +++T Y ++AV LG +YAAVPLYR C TG GG + + ++PV
Sbjct: 88 RRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHASDKIENMVPV-K 146
Query: 123 NKRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNNSDKDIIGMATYSITPG 182
++ I+ISF ++V L W F PQQ E+YV+PGETALAFY+AKN +DK +IG++TY+I P
Sbjct: 147 DRIIKISFNADVHASLQWNFRPQQTEIYVVPGETALAFYRAKNPTDKPVIGISTYNIVPF 206
Query: 183 ESSPYFNKIQCFCFEEQKLAAGEEVDMPVFFFIDPDFASDPSMRNIDDIILHYTFFKA 240
E+ YFNKIQCFCFEEQ+L EEVDMPVFF+IDP+FA DP M +D I L YTFF+A
Sbjct: 207 EAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMIKVDLITLSYTFFEA 264
>At1g02410 [O] KOG2540 Cytochrome oxidase assembly factor COX11
Length = 287
Score = 187 bits (476), Expect = 1e-47
Identities = 93/191 (48%), Positives = 126/191 (65%), Gaps = 9/191 (4%)
Query: 55 RDYKISAARRYKDRTVAFYFTSIAVLFLGLAYAAVPLYRAICARTGYGGIPITDKRKFTD 114
R Y + K + + +Y T++ +GL YAAVPLYR C TGYGG T +RK T
Sbjct: 78 RQYSTHSPSETKSQKMLYYLTAVVFGMVGLTYAAVPLYRTFCQATGYGG---TVQRKETV 134
Query: 115 DKLIPVDSN------KRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNNSD 168
++ I S + I + F ++V+ + WKF P QREV V PGE+ALAFY A+N S
Sbjct: 135 EEKIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQREVRVKPGESALAFYTAENKSS 194
Query: 169 KDIIGMATYSITPGESSPYFNKIQCFCFEEQKLAAGEEVDMPVFFFIDPDFASDPSMRNI 228
I G++TY++TP ++ YFNKIQCFCFEEQ+L GE++DMPVFF+IDP+F +DP M I
Sbjct: 195 APITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGI 254
Query: 229 DDIILHYTFFK 239
+++IL YTFFK
Sbjct: 255 NNLILSYTFFK 265
>7296985_1 [O] KOG2540 Cytochrome oxidase assembly factor COX11
Length = 543
Score = 179 bits (454), Expect = 4e-45
Identities = 88/182 (48%), Positives = 120/182 (65%), Gaps = 5/182 (2%)
Query: 61 AARRYKDRTVAFYFTSIAVLFLGLAYAAVPLYRAICARTGYGGIPIT--DKRKFTDDKLI 118
AAR+ + ++ +Y T+ VL +GL+YAAVPLY C YGG D K K I
Sbjct: 282 AARKLRAKSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHMKKI 341
Query: 119 PVDSNKRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNNSDKDIIGMATYS 178
++ ++I F +++ + W F PQQ E+ V PGETALAFY A+N +DK +IG++TY+
Sbjct: 342 ---EDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTDKPVIGISTYN 398
Query: 179 ITPGESSPYFNKIQCFCFEEQKLAAGEEVDMPVFFFIDPDFASDPSMRNIDDIILHYTFF 238
+ P E+ YFNKIQCFCFEEQ+L EEVDMPVFF+IDP+ +DP++ D I L YTFF
Sbjct: 399 VIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPEITADPALETCDTITLSYTFF 458
Query: 239 KA 240
+A
Sbjct: 459 EA 460
>CE17988 [O] KOG2540 Cytochrome oxidase assembly factor COX11
Length = 195
Score = 177 bits (449), Expect = 1e-44
Identities = 82/167 (49%), Positives = 120/167 (71%), Gaps = 5/167 (2%)
Query: 76 SIAVLFLGLAYAAVPLYRAICARTGYGGIPITDKRKFTDDKLIPVDS--NKRIRISFTSE 133
S+ ++ +G +AA+P YR C +T +GG+ K DK+ + ++ IR+ F S+
Sbjct: 2 SLVIVAIGCTFAAIPAYRIFCEQTSFGGLTQVAK---DFDKIANMKKCEDRLIRVQFNSD 58
Query: 134 VSQILPWKFVPQQREVYVLPGETALAFYKAKNNSDKDIIGMATYSITPGESSPYFNKIQC 193
V + W+F PQQ E+YV PGETALAFY A+N +DK IIG+++Y++TP +++ YFNKIQC
Sbjct: 59 VPSSMRWEFKPQQHEIYVHPGETALAFYTARNPTDKPIIGISSYNLTPFQAAYYFNKIQC 118
Query: 194 FCFEEQKLAAGEEVDMPVFFFIDPDFASDPSMRNIDDIILHYTFFKA 240
FCFEEQ L GE+VD+PVFF+IDPD+ +DP++ +D I+L YTFF+A
Sbjct: 119 FCFEEQILNPGEQVDLPVFFYIDPDYVNDPALEYLDSILLSYTFFEA 165
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,497,287
Number of Sequences: 60738
Number of extensions: 590987
Number of successful extensions: 1133
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 6
length of query: 261
length of database: 30,389,216
effective HSP length: 104
effective length of query: 157
effective length of database: 24,072,464
effective search space: 3779376848
effective search space used: 3779376848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)