ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1767 good K KOG3400 Transcription RNA polymerase subunit 8
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1767 611539 611105 -145
(145 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR224c [K] KOG3400 RNA polymerase subunit 8 204 3e-53
SPBC14C8.12 [K] KOG3400 RNA polymerase subunit 8 97 1e-20
At3g59600 [K] KOG3400 RNA polymerase subunit 8 88 3e-18
At1g54250 [K] KOG3400 RNA polymerase subunit 8 87 6e-18
7296484 [K] KOG3400 RNA polymerase subunit 8 87 8e-18
CE04448 [K] KOG3400 RNA polymerase subunit 8 84 8e-17
Hs14589953 [K] KOG3400 RNA polymerase subunit 8 81 5e-16
>YOR224c [K] KOG3400 RNA polymerase subunit 8
Length = 146
Score = 204 bits (519), Expect = 3e-53
Identities = 105/148 (70%), Positives = 117/148 (78%), Gaps = 5/148 (3%)
Query: 1 MSSALFDDVFTVQEVDTGRYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVMIT 60
MS+ LFDD+F V EVD GRYNKV RIEA ST+Q+ CKLTLDIN ELFP+ QD L V I
Sbjct: 1 MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIA 60
Query: 61 TSLQLD---GSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDLLAVYYSF 117
+SL L+ ++ SWR P AG RSLADDYDYVMYGTAYKFEEV +KDL+AVYYSF
Sbjct: 61 SSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEV--SKDLIAVYYSF 118
Query: 118 GGLLMRLEGNYRLLNNLKQENAYLLCRK 145
GGLLMRLEGNYR LNNLKQENAYLL R+
Sbjct: 119 GGLLMRLEGNYRNLNNLKQENAYLLIRR 146
>SPBC14C8.12 [K] KOG3400 RNA polymerase subunit 8
Length = 125
Score = 96.7 bits (239), Expect = 1e-20
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 21/143 (14%)
Query: 3 SALFDDVFTVQEVDTGRYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVMITTS 62
S L D++FTV VD +Y +VSRI A S Q LTLDINS+++P++ ++ IT++
Sbjct: 4 SVLLDEIFTVTSVDKQKYQRVSRITAVS-GQNDMNLTLDINSQIYPLEKDATFSLQITSN 62
Query: 63 LQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDLLAVYYSFGGLLM 122
L + L + DY+MYG Y+ EE K K ++VY SFGGLLM
Sbjct: 63 LN------------------SPDLKEAADYIMYGKVYRVEEAKDEK--VSVYVSFGGLLM 102
Query: 123 RLEGNYRLLNNLKQENAYLLCRK 145
+EG++R L L ++ YLL R+
Sbjct: 103 AIEGSHRKLYRLSLDHVYLLLRR 125
>At3g59600 [K] KOG3400 RNA polymerase subunit 8
Length = 146
Score = 88.2 bits (217), Expect = 3e-18
Identities = 50/144 (34%), Positives = 89/144 (61%), Gaps = 8/144 (5%)
Query: 5 LFDDVFTVQEVDTG--RYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVMITTS 62
+F+D+F V ++D +++KV+R+EA+S + E + LD+N+E++P+ D+ + + +
Sbjct: 7 MFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMF-MHLDVNTEVYPLAVGDKFTLAMAPT 65
Query: 63 LQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDLLAVYYSFGGLLM 122
L LDG+ + T + P A ++LAD Y+Y+M+G YK E G +Y SFGGLLM
Sbjct: 66 LNLDGTPD---TGYFTPGA-KKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLLM 121
Query: 123 RLEGNYRLLNNLK-QENAYLLCRK 145
L+G+ +++ + + +LL RK
Sbjct: 122 LLQGDPAHISHFELDQRLFLLMRK 145
>At1g54250 [K] KOG3400 RNA polymerase subunit 8
Length = 146
Score = 87.4 bits (215), Expect = 6e-18
Identities = 50/144 (34%), Positives = 88/144 (60%), Gaps = 8/144 (5%)
Query: 5 LFDDVFTVQEVDTG--RYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVMITTS 62
LF+D+F V ++D +++KV+R++A S + E + LD+N+E++P+ D+ + + +
Sbjct: 7 LFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMF-MHLDVNTEVYPLAVGDKFTLALAPT 65
Query: 63 LQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDLLAVYYSFGGLLM 122
L LDG+ + T + P A ++LAD Y+Y+M+G YK E G +Y SFGGLLM
Sbjct: 66 LNLDGTPD---TGYFTPGA-KKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLLM 121
Query: 123 RLEGNYRLLNNLK-QENAYLLCRK 145
L+G+ +++ + + +LL RK
Sbjct: 122 LLKGDPAHISHFELDQRLFLLMRK 145
>7296484 [K] KOG3400 RNA polymerase subunit 8
Length = 149
Score = 87.0 bits (214), Expect = 8e-18
Identities = 55/150 (36%), Positives = 90/150 (59%), Gaps = 9/150 (6%)
Query: 1 MSSALFDDVFTVQEVDTG--RYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVM 58
M+ LF+D+F V+++D ++++VSR+ +S S + L LDINS L+P++ D+ ++
Sbjct: 1 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKM-DLILDINSWLYPMELGDKFRLV 59
Query: 59 ITTSLQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFE--EVKGNKDLLAVYYS 116
+ T+L+ DG + G GTR AD ++YVMYG Y+ E E L+ Y S
Sbjct: 60 LATTLREDGCPD-SGEYNPMEHEGTR--ADSFEYVMYGKIYRIEGDEAHNEASRLSAYVS 116
Query: 117 FGGLLMRLEGNYRLLNNLK-QENAYLLCRK 145
FGGLLMRL+G+ L+ + ++ YLL ++
Sbjct: 117 FGGLLMRLQGDANNLHGFEVDQHMYLLMKR 146
>CE04448 [K] KOG3400 RNA polymerase subunit 8
Length = 148
Score = 83.6 bits (205), Expect = 8e-17
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 14/152 (9%)
Query: 1 MSSALFDDVFTVQEVDTG--RYNKVSRI--EAQSTSQESCKLTLDINSELFPIKTQDQLA 56
M+ +FDD+F V+ VD ++++VSR +A+S E L +DINS+++P+K D++
Sbjct: 1 MAGIIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKME---LIIDINSQIYPLKQNDKVR 57
Query: 57 VMITTSLQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKD--LLAVY 114
+++ T+L+ DG + P Y+YVMYG Y+ E+ D LA Y
Sbjct: 58 LVLATTLREDGLAD----EGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAY 113
Query: 115 YSFGGLLMRLEGNYRLLNNLKQE-NAYLLCRK 145
SFGGLLMRL+G L+ + + N YLL +K
Sbjct: 114 ASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145
>Hs14589953 [K] KOG3400 RNA polymerase subunit 8
Length = 150
Score = 80.9 bits (198), Expect = 5e-16
Identities = 49/151 (32%), Positives = 90/151 (59%), Gaps = 10/151 (6%)
Query: 1 MSSALFDDVFTVQEVDTG--RYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVM 58
M+ LF+D+F V+++D ++++VSR+ +S S + L LD+N +++P+ D+ ++
Sbjct: 1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKM-DLILDVNIQIYPVDLGDKFRLV 59
Query: 59 ITTSLQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDL---LAVYY 115
I ++L DG+ + + P S AD ++YVMYG Y+ E + + + L+ Y
Sbjct: 60 IASTLYEDGTLDDGEYN---PTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYV 116
Query: 116 SFGGLLMRLEGNYRLLNNLKQEN-AYLLCRK 145
S+GGLLMRL+G+ L+ + ++ YLL +K
Sbjct: 117 SYGGLLMRLQGDANNLHGFEVDSRVYLLMKK 147
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,295,129
Number of Sequences: 60738
Number of extensions: 322411
Number of successful extensions: 735
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 30,389,216
effective HSP length: 96
effective length of query: 49
effective length of database: 24,558,368
effective search space: 1203360032
effective search space used: 1203360032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)