ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1800 good R KOG1632 General function prediction only Uncharacterized PHD Zn-finger protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1800 619630 620655 342
(342 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL138c [R] KOG1632 Uncharacterized PHD Zn-finger protein 268 1e-71
SPCC594.05c [R] KOG1632 Uncharacterized PHD Zn-finger protein 122 8e-28
Hs7656975 [R] KOG1632 Uncharacterized PHD Zn-finger protein 64 2e-10
7291044 [R] KOG1632 Uncharacterized PHD Zn-finger protein 62 9e-10
7291045 [R] KOG1632 Uncharacterized PHD Zn-finger protein 62 2e-09
Hs22055516 [B] KOG1633 F-box protein JEMMA and related proteins ... 50 4e-06
Hs4885547 [B] KOG1633 F-box protein JEMMA and related proteins w... 50 5e-06
SPCC645.13 [K] KOG1634 Predicted transcription factor DATF1 cont... 50 6e-06
SPBP19A11.06 [R] KOG1246 DNA-binding protein jumonji/RBP2/SMCY c... 49 8e-06
>YPL138c [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 353
Score = 268 bits (684), Expect = 1e-71
Identities = 144/356 (40%), Positives = 213/356 (59%), Gaps = 35/356 (9%)
Query: 1 MSLPSWCPRYDSRKHDPKTGEEVYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDL 60
MSLP WCP + + K +P TGE+VYCICK+PD GELMVGCDGCDDWFHF+CL IPE+++DL
Sbjct: 1 MSLPQWCPPHSTLKRNPTTGEDVYCICKRPDYGELMVGCDGCDDWFHFTCLHIPEQFKDL 60
Query: 61 VFSFYCSYCSAGITG---PALING-GKLPKTLWKRKCRLPECYTECDANSRSKYCSKKHA 116
VFSFYC YC AGITG A+ING G LPKTLWKRKCR+ +CY C + SKYCS++H
Sbjct: 61 VFSFYCPYCQAGITGKNKDAIINGEGSLPKTLWKRKCRISDCYKPCLQD--SKYCSEEHG 118
Query: 117 VQYVQSIVDKLNLPGVDKIALLRQLLNETTSLEEFKTLGR----DKLPEVTSPLSKDQYS 172
++V I +L + A++++++ +T +++FK G+ D V + K+ +
Sbjct: 119 REFVNDIWSRLKTD--EDRAVVKKMVEQTGHIDKFKKFGQLDFIDNNIVVKTDDEKEIFD 176
Query: 173 KLLENDQHLNKLINEHDELVSVKLSKLNEEDAVIEKYVNWIGEV-------NERLSPHF- 224
+++ D L L ++ E+ + L ++ ++E Y+ W+ V ++ + H
Sbjct: 177 QIVVRDMTLKTLEDDLQEVQEISLPLFKKKLELLEVYLGWLDNVYTEMRKLDDDAASHVE 236
Query: 225 -----NQPTGRKKSKSAS----KVTICGYHNEF-TIPRSVEEFLDKLLQLKEDENSNITS 274
++ T RKK K++S + ICGY + + IP SVEEF+ N T
Sbjct: 237 CGKEDSKGTKRKKKKNSSRSRARKNICGYCSTYERIPCSVEEFVRDF-----GSNEEATK 291
Query: 275 VDGVCVKTKCAKHQDWITLSQNDLSEQKDSLENVKRRLDLLISVRTNQLRISFFEQ 330
+ VC K KC +H DW++ +Q +Q DSLE+++ RL LI R QL I ++E+
Sbjct: 292 IHEVCTKWKCNRHLDWVSTNQEQYLQQIDSLESMQERLQHLIQARKKQLNIQYYEE 347
>SPCC594.05c [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 424
Score = 122 bits (306), Expect = 8e-28
Identities = 96/327 (29%), Positives = 150/327 (45%), Gaps = 51/327 (15%)
Query: 23 VYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYCSAGITGPALINGG 82
+YCIC+KPD G M+GCDGC+DWFH +C+ IPE Y DL ++C C+ G
Sbjct: 119 LYCICQKPDDGSWMLGCDGCEDWFHGTCVNIPESYNDLTVQYFCPKCTEEGKG------- 171
Query: 83 KLPKTLWKRKCRLPECYTECDANSRSKYCSKKHAVQYVQSIVDKLNLPGVDKIALLRQLL 142
T WKRKCRL EC N S YCS KH V + + +K+ L V+ A ++ L+
Sbjct: 172 ---ITTWKRKCRLRECSNPTRPN--SNYCSDKHGVDFFR---EKVKLSTVEPSA-IKNLV 222
Query: 143 NETTSLEEFKTLGR--DKLPEVTSPLSKDQYSKLLENDQHLNKLINEHDELVSVKLSKLN 200
EEF+ LG LP P + Y+ +E LN I V+L+K
Sbjct: 223 LFAKKREEFQNLGTVGPTLPSQVPP--EVVYNFEIEEANRLNAEI--------VQLNKEK 272
Query: 201 EEDAVIEKYVNWIGEVNERLSPHFNQPTGRKKSKSASKVTICGYHNEFTI-PRSVEEFLD 259
E + + ++ I + + R + + G KK +CG+ + + + E +
Sbjct: 273 EVASNKKIFLQLIKDSSRRAVLAYKEREGIKKD-------LCGFDSRLLFNQQQMNELWE 325
Query: 260 KL---LQLKEDENSNITSVDGVCV--KTKCAKHQDWITLSQNDLSEQKDSLENVKRRLDL 314
K+ L D + + S + C K +CAKH W + D Q+ N+ ++L++
Sbjct: 326 KVSNGAPLSLDMSID-PSPESTCFTEKRRCAKHTSWQVIFTEDFELQE---SNILQKLNM 381
Query: 315 LISVRTNQLRISFFEQEMSNRVLPGVK 341
+ + L + R LPG++
Sbjct: 382 KQTAKDVML------EHQKQRCLPGIQ 402
>Hs7656975 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 656
Score = 64.3 bits (155), Expect = 2e-10
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 23 VYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYC 69
+YCIC+KPD M+GCD C++WFH C++I EK + +YC C
Sbjct: 27 IYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCREC 73
>7291044 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 386
Score = 62.4 bits (150), Expect = 9e-10
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 18 KTGEEVYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYC 69
K + YCIC+ D M+GCDGC++W+H C++I EK + + ++YC C
Sbjct: 54 KQKDREYCICRSSDCSRFMIGCDGCEEWYHGDCIEITEKDAEHIKNYYCRRC 105
>7291045 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 663
Score = 61.6 bits (148), Expect = 2e-09
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 18 KTGEEVYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYC 69
K ++ YCIC+ D M+GCDGC++W+H C+ I EK + +YC C
Sbjct: 56 KQEDQAYCICRSSDCSRFMIGCDGCEEWYHGDCIGITEKEAKHIKQYYCRRC 107
>Hs22055516 [B] KOG1633 F-box protein JEMMA and related proteins with JmjC
PHD F-box and LRR domains
Length = 1060
Score = 50.4 bits (119), Expect = 4e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 23 VYCICKKP-DTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYCSAGITGPALI 79
VYC+C+ P D M+ CD C DWFH SC+ + E+ + ++C C + GP+++
Sbjct: 42 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV-LHGPSIM 98
>Hs4885547 [B] KOG1633 F-box protein JEMMA and related proteins with JmjC
PHD F-box and LRR domains
Length = 1099
Score = 50.1 bits (118), Expect = 5e-06
Identities = 19/48 (39%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
Query: 23 VYCICKKP-DTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYC 69
VYC+C+ P D M+ CD C DWFH SC+ + E+ + ++C C
Sbjct: 6 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNC 53
>SPCC645.13 [K] KOG1634 Predicted transcription factor DATF1 contains PHD and
TFS2M domains
Length = 721
Score = 49.7 bits (117), Expect = 6e-06
Identities = 22/48 (45%), Positives = 30/48 (61%), Gaps = 3/48 (6%)
Query: 23 VYCICK-KPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYC 69
V C+CK + D G+ V CDGCD W H SC+ + +K D+ S+YC C
Sbjct: 21 VRCVCKSQEDIGDTWVQCDGCDCWQHASCVGLADK--DIPESYYCEVC 66
>SPBP19A11.06 [R] KOG1246 DNA-binding protein jumonji/RBP2/SMCY contains JmjC
domain
Length = 1513
Score = 49.3 bits (116), Expect = 8e-06
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 23 VYCICKKPDTGELMVGCDGCDDWFHFSCLKIPEKYRDLVFSFYCSYCSAGITGPALINGG 82
++C C+ P++G +M+ C+ C +W+H CLK+ +K F C C + P L N
Sbjct: 1097 IFCFCRLPESG-VMIECEICHEWYHAKCLKMSKKKLRQDEKFTCPICDYRVEIPRLSNRP 1155
Query: 83 KLP--KTLWKRKCRLP 96
KL ++L+K LP
Sbjct: 1156 KLEDLQSLYKDVKLLP 1171
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,512,683
Number of Sequences: 60738
Number of extensions: 1011663
Number of successful extensions: 3742
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3728
Number of HSP's gapped (non-prelim): 11
length of query: 342
length of database: 30,389,216
effective HSP length: 107
effective length of query: 235
effective length of database: 23,890,250
effective search space: 5614208750
effective search space used: 5614208750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)