ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1805 suspect: Pn B KOG0264 Chromatin structure and dynamics Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1805 621115 622464 450
(450 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.18 [B] KOG0264 Nucleosome remodeling factor subunit CAF... 62 2e-09
SPBC1711.07 [R] KOG0302 Ribosome Assembly protein 58 3e-08
YMR131c [R] KOG0302 Ribosome Assembly protein 55 3e-07
Hs13899346 [R] KOG0302 Ribosome Assembly protein 54 5e-07
>SPAC29A4.18 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 431
Score = 62.0 bits (149), Expect = 2e-09
Identities = 93/394 (23%), Positives = 149/394 (37%), Gaps = 67/394 (17%)
Query: 5 IRTNKVKNEEFKIWKKTIPSLYEHISTLQPKIFSPSESAQ-SPERRVLFTELISEEADKG 63
I K NEE+KIWKK P LY+ I T + P S Q PE+++ A+ G
Sbjct: 20 INQEKCINEEYKIWKKNSPFLYDLIIT--RALEWPCMSLQWYPEQQIF--------AEHG 69
Query: 64 LLNTSIYYSQRSEIYE-----IGVQLPIGAYT---------SHDDKELPQPRYSEFFSEP 109
++ R+++ + +QLP T S D+ + S +S P
Sbjct: 70 YTEQKMFLGVRADVGKYLLAVASIQLPYLNQTVPPTTMEGASAGDESSLRVNISNLYSHP 129
Query: 110 ---ANAKWVFEGQSIASFKANHSTSALIVMSKKGTLAWYNGSSKKPLK---SLERSSEKD 163
+AK + + S + N+ L+ K + Y+ +S+ PLK L + ++
Sbjct: 130 ESVCSAKLMPQDDSCVATVGNYHNDVLVF--DKESFESYSSASESPLKPKYRLTKHTQPC 187
Query: 164 VTADFDISTDGKYVVRFESPVPESAQSGTKITVINNTDNIGDVLHTITLPNTKQARCVKF 223
+ ++ + G V S ++ S + N +D+ VL + KQ V+F
Sbjct: 188 TSVCWNFLSKGTLV----SGSQDATLSCWDLNAYNESDS-ASVLKVHISSHEKQVSDVRF 242
Query: 224 H--TATLFSTVTEDNLLRFWDIRARDEMLFXXXXXXXXXXXXXXXXXXXVEDDGTINVVE 281
H L ++V+ D L DIR D G I+ V
Sbjct: 243 HYKHQDLLASVSYDQYLHVHDIRRPD--------------ASTKPARSVHAHSGPIHSVA 288
Query: 282 ASKQFDTLFITGSDAGVIKLWDLRSIAARNSTEVKDATEIVTLYQLDNDPVVDIQFSPLE 341
+ D + T S I LWDLR++ R T + D V I FSP E
Sbjct: 289 FNPHNDFILATCSTDKTIALWDLRNLNQRLHT-----------LEGHEDIVTKISFSPHE 337
Query: 342 PECFLTVGASGNVYHWDISYLINESEQQGEDSAD 375
+ A WD+S + +Q E++ D
Sbjct: 338 EPILASTSADRRTLVWDLSRI--GEDQPAEEAQD 369
>SPBC1711.07 [R] KOG0302 Ribosome Assembly protein
Length = 480
Score = 57.8 bits (138), Expect = 3e-08
Identities = 45/196 (22%), Positives = 81/196 (40%), Gaps = 30/196 (15%)
Query: 200 TDNIGDVLHTITLPNTKQARCVKFHTATLFSTVTEDNLLRFWDIRARDEMLFXXXXXXXX 259
TD+ + HT + + + + K +FS+ + D R WD+R + +
Sbjct: 282 TDSSPFLSHTAAVEDLQWSPSEK----NVFSSCSCDGTFRIWDVRNKQK----------- 326
Query: 260 XXXXXXXXXXXVEDDGTINVVEASKQFDTLFITGSDAGVIKLWDLRSIAARNSTEVKDAT 319
+NV+ + + L TG+D GV +WDLRS+ + +S AT
Sbjct: 327 ----TSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSVWDLRSLKSSSSV----AT 378
Query: 320 EIVTLYQLDNDPVVDIQFSPLEPECFLTVGASGNVYHWDISYLINESEQQGEDSADSDEI 379
+ + ++ P+ I++ P E VGA + WD+S ++E EQ + ++
Sbjct: 379 PVAS-FKWHRAPIYSIEWHPNEDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDV 437
Query: 380 YQDDIQEHSLKFLHTG 395
L F+H G
Sbjct: 438 ------PPQLMFIHMG 447
>YMR131c [R] KOG0302 Ribosome Assembly protein
Length = 511
Score = 54.7 bits (130), Expect = 3e-07
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 211 TLPNTKQARCVKFHT--ATLFSTVTEDNLLRFWDIRARDEMLFXXXXXXXXXXXXXXXXX 268
T+ N K +++ +T+F+T D +R WD R++
Sbjct: 317 TVSNNKSIEDIQWSRTESTVFATAGCDGYIRIWDTRSKKHK-----------------PA 359
Query: 269 XXVEDDGT-INVVEASKQFDTLFITGSDAGVIKLWDLRSIAARNSTEVKDATEIVTLYQL 327
V+ T +NV+ S + L +G D G +WDLR N+ DA + V Y
Sbjct: 360 ISVKASNTDVNVISWSDKIGYLLASGDDNGTWGVWDLRQFTPSNA----DAVQPVAQYDF 415
Query: 328 DNDPVVDIQFSPLEPECFLTVGASGN-VYHWDISYLINESE--QQGEDSADSDEI 379
+ I F+PL+ E + VG+ N V WD+S ++ E QQ ++ + EI
Sbjct: 416 HKGAITSIAFNPLD-ESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQEI 469
>Hs13899346 [R] KOG0302 Ribosome Assembly protein
Length = 446
Score = 53.9 bits (128), Expect = 5e-07
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 26/149 (17%)
Query: 227 TLFSTVTEDNLLRFWDIRARDEMLFXXXXXXXXXXXXXXXXXXXVEDDGTINVVEASKQF 286
T+F++ + D +R WDIRA DG +NV+ S++
Sbjct: 275 TVFASCSADASIRIWDIRAAPSKACMLTTATAH--------------DGDVNVISWSRR- 319
Query: 287 DTLFITGSDAGVIKLWDLRSIAARNSTEVKDATEIVTLYQLDNDPVVDIQFSPLEPECFL 346
+ ++G D G +K+WDLR + K + + T Q PV +++ P + F
Sbjct: 320 EPFLLSGGDDGALKIWDLR--------QFKSGSPVATFKQ-HVAPVTSVEWHPQDSGVFA 370
Query: 347 TVGASGNVYHWDISYLINESEQQGEDSAD 375
GA + WD++ + + G+ AD
Sbjct: 371 ASGADHQITQWDLA--VERDPEAGDVEAD 397
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,337,474
Number of Sequences: 60738
Number of extensions: 1138051
Number of successful extensions: 3390
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3377
Number of HSP's gapped (non-prelim): 6
length of query: 450
length of database: 30,389,216
effective HSP length: 110
effective length of query: 340
effective length of database: 23,708,036
effective search space: 8060732240
effective search space used: 8060732240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)