ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV1932 good A KOG1780 RNA processing and modification Small Nuclear ribonucleoprotein G
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV1932 660221 660433 71
(71 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFL017w-a [A] KOG1780 Small Nuclear ribonucleoprotein G 84 4e-17
At3g11500 [A] KOG1780 Small Nuclear ribonucleoprotein G 72 1e-13
CE22871 [A] KOG1780 Small Nuclear ribonucleoprotein G 72 2e-13
SPBC4B4.05 [A] KOG1780 Small Nuclear ribonucleoprotein G 71 2e-13
At2g23930 [A] KOG1780 Small Nuclear ribonucleoprotein G 70 5e-13
7293253 [A] KOG1780 Small Nuclear ribonucleoprotein G 69 1e-12
Hs4507133 [A] KOG1780 Small Nuclear ribonucleoprotein G 68 3e-12
7298334 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor 49 2e-06
SPCC285.12 [A] KOG1781 Small Nuclear ribonucleoprotein splicing ... 46 8e-06
>YFL017w-a [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 77
Score = 84.0 bits (206), Expect = 4e-17
Identities = 40/70 (57%), Positives = 56/70 (79%), Gaps = 3/70 (4%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEV---QMGPQTVVRGNS 61
K+YMDKK++L +NG+RK+ GILRGYD FLN+VLD+ ++I E Q+G QTV+RGNS
Sbjct: 8 KKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIRGNS 67
Query: 62 IVSIEPLDSL 71
I+S+E LD++
Sbjct: 68 IISLEALDAI 77
>At3g11500 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 79
Score = 72.4 bits (176), Expect = 1e-13
Identities = 32/65 (49%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
K+YMDKKL ++LN NR ++G LRG+D F+NLV+DN +++ + + +G V+RGNSIV+
Sbjct: 11 KKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIG-MVVIRGNSIVT 69
Query: 65 IEPLD 69
+E L+
Sbjct: 70 VEALE 74
>CE22871 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 77
Score = 71.6 bits (174), Expect = 2e-13
Identities = 33/68 (48%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEE-GEVQMGPQTVVRGNSIV 63
K+YMDK++ L+LNGNR++ GILRG+D F+N+V+D ++ ++ G V +G TV+RGNS+V
Sbjct: 10 KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLG-MTVIRGNSVV 68
Query: 64 SIEPLDSL 71
+EP + +
Sbjct: 69 IMEPKERI 76
>SPBC4B4.05 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 77
Score = 71.2 bits (173), Expect = 2e-13
Identities = 31/67 (46%), Positives = 49/67 (72%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
K+Y+D+++ +QLNG+RK+ G+LRGYD FLN+VL++ I+ +GE +RGNS++
Sbjct: 10 KKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSVIM 69
Query: 65 IEPLDSL 71
IE LD +
Sbjct: 70 IETLDKM 76
>At2g23930 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 80
Score = 70.1 bits (170), Expect = 5e-13
Identities = 32/65 (49%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
K+YMDKKL ++LN NR + G LRG+D F+NLV+DN +++ + +G V+RGNSIV+
Sbjct: 11 KKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIG-MVVIRGNSIVT 69
Query: 65 IEPLD 69
+E L+
Sbjct: 70 VEALE 74
>7293253 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 76
Score = 68.9 bits (167), Expect = 1e-12
Identities = 31/65 (47%), Positives = 47/65 (71%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
K+YMDK+++L+LNG R + GILRG+D F+N+VLD+ ++ ++ V+RGNSIV
Sbjct: 10 KKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVM 69
Query: 65 IEPLD 69
+E LD
Sbjct: 70 VEALD 74
>Hs4507133 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 76
Score = 67.8 bits (164), Expect = 3e-12
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
K++MDKKL L+LNG R + GILRG+D F+NLV+D +++ G+ V+RGNSI+
Sbjct: 10 KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIM 69
Query: 65 IEPLD 69
+E L+
Sbjct: 70 LEALE 74
>7298334 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor
Length = 110
Score = 48.5 bits (114), Expect = 2e-06
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Query: 6 QYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDN----------PIQIFEEGEVQMGPQT 55
+Y++K++ ++ G R+ GIL+GYDA LNLVLDN P ++ EE +G
Sbjct: 26 KYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLG-LV 84
Query: 56 VVRGNSIVSIEPLDSL 71
V RG ++V I P D +
Sbjct: 85 VCRGTALVLICPQDGV 100
>SPCC285.12 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor
Length = 113
Score = 46.2 bits (108), Expect = 8e-06
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 6 QYMDKKLILQLNGNRKIIGILRGYDAFLNLVLD-------NPIQIFEEGEVQMGPQTVVR 58
+Y D+++ G R+I GIL+G+D +NLVLD NP G ++ VVR
Sbjct: 30 RYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVR 89
Query: 59 GNSIVSIEPLD 69
G ++V I P+D
Sbjct: 90 GTTLVLIAPMD 100
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.145 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,145,113
Number of Sequences: 60738
Number of extensions: 135690
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 30,389,216
effective HSP length: 47
effective length of query: 24
effective length of database: 27,534,530
effective search space: 660828720
effective search space used: 660828720
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)