ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV1966   suspect: LH   W     KOG3989  Extracellular structures                                       Beta-2-glycoprotein I

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV1966 667841  668503 221  
         (221 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR140w [W] KOG3989 Beta-2-glycoprotein I                             185   5e-47
SPBPJ4664.05 [W] KOG3989 Beta-2-glycoprotein I                         69   4e-12

>YHR140w [W] KOG3989 Beta-2-glycoprotein I
          Length = 239

 Score =  185 bits (469), Expect = 5e-47
 Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 11/215 (5%)

Query: 6   YVLLLSLACVFTTTYGLIQCTQIKLPSNLATAGHKQFLTNISAVVTIVNGALNTVNQLL- 64
           + L L+ AC+ T+T+G ++ T + LP +L+ AGHKQFLT IS + TI+N A+N  N  + 
Sbjct: 10  FTLTLNTACLLTSTWGFVRATSVVLPPSLSKAGHKQFLTIISIIATIINNAVNISNYYIQ 69

Query: 65  -GNKGTLH------FWSREFTFPIATCLETIVCVIYWPLRIFFIPLIMHGVQDSSRSPLP 117
             NK  L       F SR  T P++  LE+IV  +YWPLR+FF+ LIMHGV+ ++++P P
Sbjct: 70  RNNKMNLETKKKSDFISRHVTLPVSLVLESIVATVYWPLRLFFVNLIMHGVESTAKTPFP 129

Query: 118 MHVDIAIHLLPIIYLCLDYFFL-KEAPFQIAGWKVFLSLPLLGLTYRIYLDSII--GPSG 174
           M VD+AIHL PI+YL  D++       F+++    +L +  L  +Y  YL  +I  G   
Sbjct: 130 MTVDMAIHLYPILYLLADHYLSGSGTKFKLSNKHAWLIVTSLAFSYFQYLAFLIDAGQGQ 189

Query: 175 SYPYPFLDVPEPYKSVIFVTVSLSSGGLYILYQKF 209
           +YPYPFLDV EPYKS+IFV V+  +   Y+ YQKF
Sbjct: 190 AYPYPFLDVNEPYKSIIFVVVATITWAYYVFYQKF 224


>SPBPJ4664.05 [W] KOG3989 Beta-2-glycoprotein I
          Length = 163

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 85  LETIVCVIYWPLRIFFIPLIMHGVQDSSRSPLPMHVDIAIHLLPIIYLCLDYFFLKEAPF 144
           LETIV ++YW +  +   L+   +      PLP++ DI++HL+P +Y  +DY F    PF
Sbjct: 29  LETIVSILYWSIVSYDRSLL---IPKDRPVPLPLNFDISVHLMPTVYTLIDYLFF-SPPF 84

Query: 145 QIAGWKVFLSLPLLGLTYRIYLDSIIGPSGSYPYPFLDVPEPYKSVIFVTV-SLSSGGLY 203
            ++     L    + ++Y ++++     +  Y YP L + +P K  IF TV S+ S   Y
Sbjct: 85  SLSIGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCY 144

Query: 204 ILYQKFH 210
           I+ +  H
Sbjct: 145 IVLKMVH 151


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.328    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,392,432
Number of Sequences: 60738
Number of extensions: 579340
Number of successful extensions: 1390
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 2
length of query: 221
length of database: 30,389,216
effective HSP length: 102
effective length of query: 119
effective length of database: 24,193,940
effective search space: 2879078860
effective search space used: 2879078860
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)