ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2010 good K KOG3507 Transcription DNA-directed RNA polymerase, subunit RPB7.0
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2010 684998 685207 70
(70 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR143w-a [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0 121 2e-28
SPBC19C2.03 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0 65 1e-11
Hs4826924 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0 57 6e-09
At5g41010 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0 53 9e-08
CE20710 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0 47 4e-06
>YHR143w-a [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0
Length = 70
Score = 121 bits (304), Expect = 2e-28
Identities = 58/70 (82%), Positives = 62/70 (87%)
Query: 1 MSREGFQIPTNLDXXXXXXXQSRTATLKYICAECSSRLSLSRTDPVRCKNCGHRILLKAR 60
MSREGFQIPTNLD Q+RTATLKYICAECSS+LSLSRTD VRCK+CGHRILLKAR
Sbjct: 1 MSREGFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKAR 60
Query: 61 TKRMVQFEAR 70
TKR+VQFEAR
Sbjct: 61 TKRLVQFEAR 70
>SPBC19C2.03 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0
Length = 63
Score = 65.5 bits (158), Expect = 1e-11
Identities = 26/48 (54%), Positives = 37/48 (76%)
Query: 23 RTATLKYICAECSSRLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
R AT+ Y+CA+C +R ++ + +RC+ CGHR++ K RTKRMVQFEAR
Sbjct: 16 RPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>Hs4826924 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0
Length = 58
Score = 56.6 bits (135), Expect = 6e-09
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 29 YICAECSSRLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
YIC EC + + DP+RC+ CG+RI+ K RTKR+V F+AR
Sbjct: 17 YICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>At5g41010 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0
Length = 51
Score = 52.8 bits (125), Expect = 9e-08
Identities = 20/42 (47%), Positives = 30/42 (70%)
Query: 29 YICAECSSRLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
Y+C +C +L D ++C+ CG+RIL K RT+R+VQ+EAR
Sbjct: 10 YVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>CE20710 [K] KOG3507 DNA-directed RNA polymerase subunit RPB7.0
Length = 62
Score = 47.4 bits (111), Expect = 4e-06
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 23 RTATLKYICAECSSRLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
++ ++ YIC EC + + D +RC+ CG+RIL K R ++++ ++AR
Sbjct: 15 KSNSMIYICGECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,187,988
Number of Sequences: 60738
Number of extensions: 81577
Number of successful extensions: 479
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 30,389,216
effective HSP length: 46
effective length of query: 24
effective length of database: 27,595,268
effective search space: 662286432
effective search space used: 662286432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)