ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV2027.1   suspect: LH  S     KOG4805   Function unknown                                               Uncharacterized conserved protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV2027.1 691716 691561 -52  
         (52 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs13376125 [S] KOG4805 Uncharacterized conserved protein               29   1.1  
YER047c [O] KOG0740 AAA+-type ATPase                                   27   6.9  

>Hs13376125 [S] KOG4805 Uncharacterized conserved protein
          Length = 724

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 16  ASKHKTTVDPNMKPPISSPFIKGTPP 41
           ASK  TT  P++KP +  P +K  PP
Sbjct: 437 ASKTTTTKAPSVKPKVKQPKVKAEPP 462


>YER047c [O] KOG0740 AAA+-type ATPase
          Length = 897

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 4   SPTLILKLNSLGASKHKTTVDPNMKPPISSPFIKGTPPNTLL 45
           +PTLI K      ++ K+   P +K   SSP    T PN+++
Sbjct: 398 TPTLITKSTPTFITRSKSNTKPIIKSNASSPTSSLTVPNSVI 439


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,402,541
Number of Sequences: 60738
Number of extensions: 99795
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 3
length of query: 52
length of database: 30,389,216
effective HSP length: 28
effective length of query: 24
effective length of database: 28,688,552
effective search space: 688525248
effective search space used: 688525248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)