ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2053 check: MH K KOG4210 Transcription Nuclear localization sequence binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2053 700152 701324 391
(391 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL175c [K] KOG4210 Nuclear localization sequence binding protein 449 e-126
SPAC3G6.04 [K] KOG4210 Nuclear localization sequence binding pro... 203 4e-52
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 84 3e-16
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 79 1e-14
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 77 3e-14
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 77 4e-14
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 77 4e-14
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 73 6e-13
Hs4885423 [R] KOG0118 FOG: RRM domain 71 2e-12
7298360 [R] KOG0118 FOG: RRM domain 71 2e-12
Hs14110417 [R] KOG0118 FOG: RRM domain 69 1e-11
SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM... 69 2e-11
At3g55340 [R] KOG0118 FOG: RRM domain 69 2e-11
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 68 2e-11
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 68 3e-11
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 67 3e-11
Hs14043072 [R] KOG0118 FOG: RRM domain 67 6e-11
At4g24770 [R] KOG0118 FOG: RRM domain 67 6e-11
ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 66 8e-11
CE28911 [R] KOG0118 FOG: RRM domain 66 8e-11
YOL041c [R] KOG0118 FOG: RRM domain 66 1e-10
Hs4504447 [R] KOG0118 FOG: RRM domain 65 1e-10
At5g50250 [R] KOG0118 FOG: RRM domain 65 1e-10
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 65 2e-10
Hs4758542 [R] KOG0118 FOG: RRM domain 64 4e-10
Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 64 4e-10
Hs14110420 [R] KOG0118 FOG: RRM domain 64 4e-10
Hs14110414 [R] KOG0118 FOG: RRM domain 64 4e-10
Hs14110404 [R] KOG0118 FOG: RRM domain 64 4e-10
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 64 4e-10
At2g46610 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 64 5e-10
Hs13654587 [R] KOG0118 FOG: RRM domain 63 7e-10
At1g48920 [K] KOG4210 Nuclear localization sequence binding protein 63 7e-10
Hs13650572 [R] KOG0118 FOG: RRM domain 62 1e-09
Hs4504445 [R] KOG0118 FOG: RRM domain 62 1e-09
Hs14043070 [R] KOG0118 FOG: RRM domain 62 1e-09
Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 61 3e-09
At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 60 4e-09
SPBC13A2.01c [A] KOG0121 Nuclear cap-binding protein complex sub... 59 9e-09
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 59 9e-09
At4g13850 [R] KOG0118 FOG: RRM domain 59 9e-09
7299788 [R] KOG0118 FOG: RRM domain 59 9e-09
YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 59 1e-08
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 59 1e-08
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 2e-08
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 58 2e-08
At3g08000 [R] KOG0118 FOG: RRM domain 58 2e-08
Hs17433768 [R] KOG0118 FOG: RRM domain 58 3e-08
CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 58 3e-08
7301687 [R] KOG0118 FOG: RRM domain 58 3e-08
7301686 [R] KOG0118 FOG: RRM domain 58 3e-08
At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein 57 4e-08
HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 57 5e-08
At3g23830 [R] KOG0118 FOG: RRM domain 57 5e-08
At2g22100 [R] KOG0118 FOG: RRM domain 57 5e-08
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 57 5e-08
SPAC16E8.06c [R] KOG0118 FOG: RRM domain 57 6e-08
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 57 6e-08
Hs22049560 [R] KOG0118 FOG: RRM domain 57 6e-08
Hs22042102 [R] KOG0118 FOG: RRM domain 57 6e-08
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 57 6e-08
At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 57 6e-08
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 57 6e-08
Hs5031693 [R] KOG0118 FOG: RRM domain 56 8e-08
Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 56 8e-08
Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM s... 56 8e-08
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 56 8e-08
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 56 8e-08
SPAC328.05 [R] KOG0118 FOG: RRM domain 56 1e-07
Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 56 1e-07
CE17059 [R] KOG0118 FOG: RRM domain 56 1e-07
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 56 1e-07
CE05167 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 56 1e-07
At5g61030 [R] KOG0118 FOG: RRM domain 56 1e-07
At1g73530 [R] KOG0118 FOG: RRM domain 56 1e-07
At1g60000 [R] KOG0118 FOG: RRM domain 55 1e-07
7294907 [R] KOG0110 RNA-binding protein (RRM superfamily) 55 1e-07
Hs17458873 [R] KOG0118 FOG: RRM domain 55 2e-07
7297205 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 55 2e-07
CE29317 [R] KOG0118 FOG: RRM domain 55 2e-07
At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 55 2e-07
At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 55 2e-07
7301511 [R] KOG0118 FOG: RRM domain 55 2e-07
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 54 3e-07
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 54 3e-07
At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 54 3e-07
7299785 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 54 3e-07
Hs14734196 [R] KOG0118 FOG: RRM domain 54 4e-07
At4g25500 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 54 4e-07
SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM super... 54 5e-07
Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily) 54 5e-07
Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 53 9e-07
YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 52 1e-06
Hs5803036 [R] KOG0118 FOG: RRM domain 52 1e-06
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 52 1e-06
YIL061c [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 52 2e-06
HsM13236563 [R] KOG0226 RNA-binding proteins 52 2e-06
Hs21359951 [R] KOG0226 RNA-binding proteins 52 2e-06
At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 52 2e-06
At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 52 2e-06
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 52 2e-06
At1g11650 [R] KOG0118 FOG: RRM domain 52 2e-06
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 51 3e-06
Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 51 3e-06
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 3e-06
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 51 3e-06
At3g56860 [R] KOG0118 FOG: RRM domain 51 3e-06
At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 51 3e-06
7297948 [A] KOG4207 Predicted splicing factor SR protein superfa... 51 3e-06
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 51 3e-06
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 3e-06
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 51 3e-06
CE01885 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 51 3e-06
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 51 3e-06
7296727 [R] KOG0226 RNA-binding proteins 51 3e-06
7290689 [A] KOG0131 Splicing factor 3b subunit 4 51 3e-06
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 50 4e-06
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 50 4e-06
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 50 4e-06
At5g46840 [R] KOG0118 FOG: RRM domain 50 4e-06
At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein 50 4e-06
At1g74230 [R] KOG0118 FOG: RRM domain 50 4e-06
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 4e-06
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 50 6e-06
CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 50 6e-06
CE01888 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 50 6e-06
At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 50 6e-06
At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily) 50 6e-06
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 50 6e-06
SPBC16E9.12c [A] KOG4209 Splicing factor RNPS1 SR protein superf... 50 7e-06
Hs4502847 [R] KOG0118 FOG: RRM domain 50 7e-06
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 50 7e-06
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 50 7e-06
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 50 7e-06
At3g50670 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 50 7e-06
At2g37220 [R] KOG0118 FOG: RRM domain 50 7e-06
7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 50 7e-06
At3g20930_2 [R] KOG0118 FOG: RRM domain 50 7e-06
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 49 1e-05
CE08254 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 49 1e-05
At5g44200 [A] KOG0121 Nuclear cap-binding protein complex subuni... 49 1e-05
At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 49 1e-05
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 49 1e-05
>YNL175c [K] KOG4210 Nuclear localization sequence binding protein
Length = 403
Score = 449 bits (1155), Expect = e-126
Identities = 238/391 (60%), Positives = 291/391 (73%), Gaps = 11/391 (2%)
Query: 9 KKVDDAVSQVLKDPTKKRKAEDEIEIDLNQSVPLSKKQKRLLRRGKVTIEELNAKYNIDS 68
K ++ V + L DPTKKRKAEDEIEIDL S+PLSKKQKRLLRRGKVT+EELNAKYNID
Sbjct: 15 KDNEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNAKYNIDP 74
Query: 69 KSIEEYKKETAEKQDN---EDTSNKKXXXXXXXXXXXXKITSKPNK-EKKFGVWVGNMAF 124
KSIEEYK++ +K+ +D ++ ++ K K E K+GVW+GN++F
Sbjct: 75 KSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSF 134
Query: 125 DTVKEDIIRFIVAKTKEN-DEGGAITEKDIVRINMP--LTKNDNKKLRNKGFAYIDFKTE 181
DT K+D++RF +AKTK+N DE +TE+DI R++MP KN N ++NKGF Y+ FK
Sbjct: 135 DTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNA-MKNKGFCYMFFKNV 193
Query: 182 KQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTED 241
+QM+AV+ LSES LNGRN+LIK++ +Y GRPDK+DLVA SKNPPSRILFVGNLSFD T+D
Sbjct: 194 EQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDD 253
Query: 242 LLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRME 301
LLRKHFQHCG+I++IRMATFED+GKCKGFAFIDFK+E G+TN LKDKSCRKIA RP+RME
Sbjct: 254 LLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRME 313
Query: 302 YGEDRSKRQVRRRPELDAREPRKPSFDIKTTQXXXXXXXXXXXX-XXXXXYSNRQPSHKD 360
YGEDRSKRQVR++ E +R SFDI + +NR+P D
Sbjct: 314 YGEDRSKRQVRKKVENVSRN-NSSSFDISNNKGYDRAGQDNGSKPEYKRSNANRRPP-VD 371
Query: 361 SNNRLKSSVALASAQRGSAAIVPSQGKKTTF 391
SNNR KSSVALA+AQRGSAAIVPSQGKK F
Sbjct: 372 SNNRTKSSVALATAQRGSAAIVPSQGKKVKF 402
>SPAC3G6.04 [K] KOG4210 Nuclear localization sequence binding protein
Length = 369
Score = 203 bits (516), Expect = 4e-52
Identities = 140/400 (35%), Positives = 201/400 (50%), Gaps = 60/400 (15%)
Query: 13 DAVSQVLKDPTKKRKAEDE--------IEIDLNQSVPLSKKQKRLLRRGKVTIEELNAKY 64
D+++ P KKRK + +EID+ + VP SKK R LR+ +++
Sbjct: 8 DSLNNKEGQPDKKRKKHESEKEGENEVLEIDVTKPVPPSKKLMRKLRKAG----KIDKDG 63
Query: 65 NIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGNMAF 124
N +++EE KK+ ++ D + + + +K +G+WVGN++F
Sbjct: 64 NWTPEALEEAKKKEEKRLKRLDAKYGRKEEGE---------SQEESKRSPWGIWVGNLSF 114
Query: 125 DTVKEDIIRFIVAKTKE------NDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDF 178
T KE + F V +T E + IT + I RI+MP++K K+ +NKGFAY+DF
Sbjct: 115 HTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKE--KRFQNKGFAYVDF 172
Query: 179 KTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDK--NDL-----VAASKNPPSRILFV 231
TE ++ + SE ALNGRN+LIK+ + GRP K N L + +SK PS ILFV
Sbjct: 173 ATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFV 232
Query: 232 GNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCR 291
GNL F+TT+ L++HF G+I R+R+ TFEDTGKCKGF F+DF D A+
Sbjct: 233 GNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM------ 286
Query: 292 KIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPSFDIKTTQXXXXXXXXXXXXXXXXXY 351
++ R+EYGEDRSKR + P AR R
Sbjct: 287 ELGHNSWRLEYGEDRSKRMRNKSPM--ARSGR----------------FNDAESLGQEDK 328
Query: 352 SNRQPSHKDSNNRLKSSVALASAQRGSAAIVPSQGKKTTF 391
N + + K ++ ALA AQR SAAIV G+K F
Sbjct: 329 PNFKRARKIDPRSVRPGAALAKAQRSSAAIVEPAGQKIKF 368
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 84.3 bits (207), Expect = 3e-16
Identities = 79/324 (24%), Positives = 152/324 (46%), Gaps = 36/324 (11%)
Query: 2 SDSSKEVKKVDDAVSQVLKDPTKKRKAEDEI---EIDLNQSVPLSKKQKRLLRRGKVTIE 58
S SS E ++ ++AV ++ + + E E + S S++++ ++ + + +
Sbjct: 140 SSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEK-K 198
Query: 59 ELNAKYNIDSKSIEEYKKETAEKQDNEDTSN-------KKXXXXXXXXXXXXKITSKPNK 111
E +++ + DS+S + E+ + + D+ + KK KIT KP++
Sbjct: 199 EGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKIT-KPSQ 257
Query: 112 EKK--FGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLR 169
+ V+VG ++++ + + +E +E G I ++ D + R
Sbjct: 258 DSNETCTVFVGRLSWNVDDQWL-------GQEFEEYGTIVGARVIM--------DGQSGR 302
Query: 170 NKGFAYIDFKTEKQMEAVVGLSESA-LNGR--NLLIKNAGSYEGRP---DKNDLVAASKN 223
+KG+ Y+DF+T + +A V + + ++GR NL + N +P + +
Sbjct: 303 SKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS 362
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
PS +FVGNLSF+ TED L F CG+I IR+ T +G+ KGF ++ F D A
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 284 ALKDKSCRKIASRPIRMEYGEDRS 307
+ + + IA RP R+++ R+
Sbjct: 423 CV-EMNGHFIAGRPCRLDFSTPRT 445
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 79.0 bits (193), Expect = 1e-14
Identities = 72/307 (23%), Positives = 135/307 (43%), Gaps = 55/307 (17%)
Query: 2 SDSSKEVKKVDDAVSQVLKDPTKKRKAEDEIEIDLNQSVPLSKKQKRLLRRGKVTIEELN 61
SDSS + ++ ++ K+ TKK ++++ D + S + ++ EE N
Sbjct: 93 SDSSSDEEEEEE------KEETKKEESKESSSSDSSSSSSSDSESEK---------EESN 137
Query: 62 AKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGN 121
K + K E AE++++E++SNKK E+ ++VG
Sbjct: 138 DK---------KRKSEDAEEEEDEESSNKKQ--------------KNEETEEPATIFVGR 174
Query: 122 MAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTE 181
+++ E + K + GG I + I R++G+ Y+DF+ +
Sbjct: 175 LSWSIDDEWL------KKEFEHIGGVIGARVIYERGTD---------RSRGYGYVDFENK 219
Query: 182 KQME-AVVGLSESALNGRNLLIKNAGSYE-GRPDKNDLVAASKNPPSRILFVGNLSFDTT 239
E A+ + ++GR + + S G D+ + + PS LF+GNLSF+
Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNAD 279
Query: 240 EDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIR 299
D + + F GE++ +R+ T +T + KGF ++ F + A AL I +RP+R
Sbjct: 280 RDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVR 339
Query: 300 MEYGEDR 306
+++ R
Sbjct: 340 LDFSSPR 346
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 77.4 bits (189), Expect = 3e-14
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Query: 163 NDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDK--NDLVAA 220
+D R+KG AY++F + +GL+ + G ++++ + + + R N+L
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKG 245
Query: 221 SKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETG 280
S P L+VG+L F+ TED+LR F+ G I I++ +TG+ KG+ FI F D
Sbjct: 246 SAGPMR--LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC 303
Query: 281 ATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPSFDIKTT 332
A AL+ + ++A RP+++ + +R+ LD+ E + D+ TT
Sbjct: 304 AKKALEQLNGFELAGRPMKVGHVTERTDAS-SASSFLDSDELERTGIDLGTT 354
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 77.0 bits (188), Expect = 4e-14
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 12/150 (8%)
Query: 163 NDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASK 222
+D R+KG AY++F + + +GL+ L G ++++ + + +KN L A +
Sbjct: 165 SDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS-----QAEKNRLAAMAN 219
Query: 223 N------PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFK 276
N P R L+VG+L F+ TED+LR F+ G+I I + DTG+ KG+ FI F
Sbjct: 220 NLQKGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS 278
Query: 277 DETGATNALKDKSCRKIASRPIRMEYGEDR 306
D A AL+ + ++A RP+R+ + +R
Sbjct: 279 DSECARRALEQLNGFELAGRPMRVGHVTER 308
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 77.0 bits (188), Expect = 4e-14
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 12/150 (8%)
Query: 163 NDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASK 222
+D R+KG AY++F + + +GL+ L G ++++ + + +KN L A +
Sbjct: 183 SDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS-----QAEKNRLAAMAN 237
Query: 223 N------PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFK 276
N P R L+VG+L F+ TED+LR F+ G+I I + DTG+ KG+ FI F
Sbjct: 238 NLQKGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS 296
Query: 277 DETGATNALKDKSCRKIASRPIRMEYGEDR 306
D A AL+ + ++A RP+R+ + +R
Sbjct: 297 DSECARRALEQLNGFELAGRPMRVGHVTER 326
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 73.2 bits (178), Expect = 6e-13
Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 32/330 (9%)
Query: 2 SDSSKEVKKVDDAVSQVLKDPT----KKRKAEDEIEIDLNQSVPLSKKQKRLLRRGKVTI 57
S SS+E DD + K PT K A+D + + S +K ++ KV+
Sbjct: 265 SSSSEEESSSDDEPTPA-KKPTVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSS 323
Query: 58 EELNAKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFG- 116
+ + + D S E K+E+ +++ + K P + + G
Sbjct: 324 KTSKQESSSDESSDESDKEESKDEKVTPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGS 383
Query: 117 --VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFA 174
++ GN+++ + DI F E G + +++ L+ D+ KG+
Sbjct: 384 KTLFAGNLSYQIARSDIENFF-------KEAGEV-------VDVRLSSFDDGSF--KGYG 427
Query: 175 YIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNL 234
+I+F + ++ + + ++ L GR++ + A G P ++ + SR ++V
Sbjct: 428 HIEFASPEEAQKALEMNGKLLLGRDVRLDLANE-RGTPRNSNPGRKGEGSQSRTIYVRGF 486
Query: 235 SFDTTEDLLRK----HFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSC 290
S ED ++K HF CGE+ R+ + T +TG +GFA+ID +G AL+ S
Sbjct: 487 SSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL--TSGFDEALQ-LSG 543
Query: 291 RKIASRPIRMEYGEDRSKRQVRRRPELDAR 320
+I I +E R + R AR
Sbjct: 544 SEIGGGNIHVEESRPRDSDEGRSSNRAPAR 573
>Hs4885423 [R] KOG0118 FOG: RRM domain
Length = 420
Score = 71.2 bits (173), Expect = 2e-12
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
KI + N++ +++G +++DT K+D+ ++ G + + I K
Sbjct: 137 KINASKNQQDDGKMFIGGLSWDTSKKDLTEYL-------SRFGEVVDCTI--------KT 181
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
D R++GF ++ FK ++ V+ L E L+G+ + K A + +G K
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKG-----------KE 230
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
PP ++ FVG LS DT+E+ ++++F GEI I + T + +GF FI + DE
Sbjct: 231 PPKKV-FVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 284 ALKDK 288
L+ +
Sbjct: 290 LLESR 294
>7298360 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 71.2 bits (173), Expect = 2e-12
Identities = 81/338 (23%), Positives = 138/338 (39%), Gaps = 31/338 (9%)
Query: 6 KEVKKVDDAVSQVLKDPTKKRKAEDEIEIDLN----QSVPLSKKQKRLLRRGKVTIEELN 61
K VK D V +++ KK A+D +I+ Q+ L K+Q +L + T E
Sbjct: 40 KTVKVPKDEVKAAVQESPKKLSAKDLAKIEKKKAKKQAQKLKKQQNKLAPKEIKTEPEAQ 99
Query: 62 AKYNIDSKSIEEYKKE--TAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWV 119
K + E+ +KE TA + + +KK + E+ V+V
Sbjct: 100 VKVESKATKKEKVEKEPTTAPNEKPKGKVSKKAKANANNKDEEGVKRIRNPAEEASTVFV 159
Query: 120 GNMAFDTVKEDIIRF-----IVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFA 174
GN+ +T + +++ +V + GG L K+ +K+ A
Sbjct: 160 GNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGK-----------QLFKHKQRKVAGSLNA 208
Query: 175 YIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNL 234
Y+ + + + + L+ S +L + A E D + K+ R +FVG+L
Sbjct: 209 YVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDA-KRTIFVGSL 267
Query: 235 SFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIA 294
+ TE+ LR+ F CGEI IR D G CKG A++ F+ AL + + +
Sbjct: 268 KYSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLAL-ELNQTLLD 325
Query: 295 SRPIRMEYGEDRSKRQVRRRPELDAREPRKPSFDIKTT 332
RPI +E + QV++ R+ S KT+
Sbjct: 326 DRPINVE------RYQVKKLGAKQVRDAAAASAASKTS 357
>Hs14110417 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 68.9 bits (167), Expect = 1e-11
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
KI + N+E + +++G +++DT K+D+ + + G + + + K
Sbjct: 67 KIDASKNEEDEGKMFIGGLSWDTTKKDLKDYF-------SKFGEVVDCTL--------KL 111
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
D R++GF ++ FK + ++ V+ E LNG+ + K A + + +K
Sbjct: 112 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK-----------TKE 160
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
P +I FVG LS DT E+ +R++F GE+ I + T K +GF FI FK+E
Sbjct: 161 PVKKI-FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
Query: 284 ALKDK 288
++ K
Sbjct: 220 IMEKK 224
>SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 68.6 bits (166), Expect = 2e-11
Identities = 64/297 (21%), Positives = 129/297 (42%), Gaps = 37/297 (12%)
Query: 35 DLNQSVPLSKKQKRLLRRGKVTIEELNAKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXX 94
D ++S P S + R RR + + ++ D + + + +D S+++
Sbjct: 173 DYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRD-----------DDRSHERKRS 221
Query: 95 XXXXXXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIV 154
K++ + + V+V +A ++ F ++ G + + IV
Sbjct: 222 RSRPRERSSKLSEEERDRRT--VFVSQLANRLTSRELYDFF-------EQAGPVRDAQIV 272
Query: 155 RINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDK 214
R D R+KG AY++F E ++A + LS L G ++++ + + R +
Sbjct: 273 R--------DKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAR 324
Query: 215 NDLV---AASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFA 271
AAS P L V N+ F+ T++ ++ F+ G+I + + +D + KGF
Sbjct: 325 EAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQR-DDQNRSKGFG 383
Query: 272 FIDFKDETGATNALKDKSCRKIASRPIRMEYGEDR-----SKRQVRRRPELDAREPR 323
+I +++ A NAL+ + +A R +R+ G D+ + ++R E AR+ R
Sbjct: 384 YIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQER 440
>At3g55340 [R] KOG0118 FOG: RRM domain
Length = 597
Score = 68.6 bits (166), Expect = 2e-11
Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 59/292 (20%)
Query: 24 KKRKAEDEIEID--------LNQSVPLSKKQKRLLRRGKVTIEELNAKY-NIDSK-SIEE 73
KKRK +D +E+D + P KK K+ ++ KV A+ N++ K +EE
Sbjct: 86 KKRKRDDAVEVDELEGDEGTKEEQKPQKKKNKKKKKKRKVNKTPKKAEEGNVEEKVKVEE 145
Query: 74 YKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIR 133
+ T K+++ NK ++VG + + + +++I
Sbjct: 146 IEVNTDNKEEDGVVPNK--------------------------LYVGGIPYQSTEDEIRS 179
Query: 134 FIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSES 193
+ + I++++ + D G A+I F TE + + +
Sbjct: 180 YFRSCGV------------IIKVDCKMRPEDGAF---SGIAFITFDTEDGAKRALAFDRA 224
Query: 194 ALNGRNLLIKN-----AGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQ 248
A+ R L I+ S R + + +R+ ++GNL++DTTE +RK F
Sbjct: 225 AMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRV-YIGNLAWDTTERDIRKLFS 283
Query: 249 HCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRM 300
C I +R+ ++TG+ KG+A +DFKD ALK + I RP+++
Sbjct: 284 DC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK-LDQQVICGRPVKI 333
Score = 50.4 bits (119), Expect = 4e-06
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 52/269 (19%)
Query: 18 VLKDPTKKRKAEDEIEIDLNQSVPLSKKQKRLLRRGKVTIEELNAKYNIDSKSIEEYKKE 77
VL + K++ ++ L+ SV + Q + L K+ ++ + K + SK + E
Sbjct: 2 VLSNKKLKQRIRQDLAESLSVSVSETNPQSQSL---KLLLDSSSHKPRL-SKREKRRNCE 57
Query: 78 TAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVA 137
T ++D+E N+ K +K K++K D V+ D +
Sbjct: 58 TFAREDDEIRENE-----VGNGGSSEKTDTKIKKKRKRD--------DAVEVDEL----- 99
Query: 138 KTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEK-QMEAVVGLSESALN 196
E DEG +K P K + KK + + K E+ +E V + E +N
Sbjct: 100 ---EGDEGTKEEQK-------PQKKKNKKKKKKRKVNKTPKKAEEGNVEEKVKVEEIEVN 149
Query: 197 GRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRI 256
N + D V +K L+VG + + +TED +R +F+ CG I+++
Sbjct: 150 TDN-------------KEEDGVVPNK------LYVGGIPYQSTEDEIRSYFRSCGVIIKV 190
Query: 257 RMATFEDTGKCKGFAFIDFKDETGATNAL 285
+ G G AFI F E GA AL
Sbjct: 191 DCKMRPEDGAFSGIAFITFDTEDGAKRAL 219
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 68.2 bits (165), Expect = 2e-11
Identities = 43/145 (29%), Positives = 69/145 (46%), Gaps = 5/145 (3%)
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
D R+KG YI+F + + LS G+ +++K + + + N
Sbjct: 202 DRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTG 261
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDF---KDETG 280
P R L+VGNL F+ +E LR+ F+ G + +++ +TG+CKGF FI F +
Sbjct: 262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321
Query: 281 ATNALKDKSCRKIASRPIRMEYGED 305
A AL K +IA R I++ D
Sbjct: 322 AQIALNGK--LEIAGRTIKVSSVSD 344
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 67.8 bits (164), Expect = 3e-11
Identities = 42/124 (33%), Positives = 70/124 (55%), Gaps = 12/124 (9%)
Query: 165 NKKLRNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
N+ ++KG+A+I+F + E EA+ ++ + GR + ++ G G P+ +++
Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP-RGSPN-------ARS 568
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
PS+ LFV LS DTTE+ L++ F +R R+ T +TG KGF F+DF E A
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKE 625
Query: 284 ALKD 287
A++D
Sbjct: 626 AMED 629
Score = 64.3 bits (155), Expect = 3e-10
Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 165 NKKLRNKGFAYIDFKTEKQMEAVVGLSESA-LNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
+K ++KG AYI+FKTE E + ++GR++ + Y G +N KN
Sbjct: 423 SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY----YTGEKGQNQDYRGGKN 478
Query: 224 PP----SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDET 279
S+ L + NLS+ TE+ L++ F+ I GK KG+AFI+F
Sbjct: 479 STWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFE 534
Query: 280 GATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRP----------ELDAREPRKPSFD 328
A AL + R+I R IR+E R R +P E E K SFD
Sbjct: 535 DAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD 593
Score = 60.5 bits (145), Expect = 4e-09
Identities = 55/246 (22%), Positives = 101/246 (40%), Gaps = 33/246 (13%)
Query: 67 DSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKK--FGVWVGNMAF 124
D + EE ++E E+ E +K K E F ++VGN+ F
Sbjct: 257 DDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNF 316
Query: 125 DTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQM 184
+ ++ I +ND +V + + +T+ F Y+DF++ + +
Sbjct: 317 NKSAPELKTGISDVFAKNDLA-------VVDVRIGMTRK---------FGYVDFESAEDL 360
Query: 185 EAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLR 244
E + L+ + G + ++ +P D + K +R L NL + T+D L+
Sbjct: 361 EKALELTGLKVFGNEIKLE-------KPKGKD---SKKERDARTLLAKNLPYKVTQDELK 410
Query: 245 KHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGE 304
+ F+ EI + GK KG A+I+FK E A ++K +I R I + Y
Sbjct: 411 EVFEDAAEIRLV-----SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 465
Query: 305 DRSKRQ 310
++ + Q
Sbjct: 466 EKGQNQ 471
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 67.4 bits (163), Expect = 3e-11
Identities = 49/172 (28%), Positives = 86/172 (49%), Gaps = 10/172 (5%)
Query: 165 NKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNP 224
NK R KG AYI+F + + +GLS L G +++++ + + R A + P
Sbjct: 272 NKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQN---AAPAFQP 328
Query: 225 PSRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETG 280
S L+VG+L F+ TED+LR F+ G+I I++ +TG+ KG+ FI + +
Sbjct: 329 KSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 388
Query: 281 ATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPSFDIKTT 332
A AL+ + ++A R +++ + ++R LD E + D+ T
Sbjct: 389 AKKALEQLNGFELAGRLMKV---GNVTERLDMNTTSLDTDEMDRTGIDLGAT 437
>Hs14043072 [R] KOG0118 FOG: RRM domain
Length = 353
Score = 66.6 bits (161), Expect = 6e-11
Identities = 54/213 (25%), Positives = 96/213 (44%), Gaps = 34/213 (15%)
Query: 108 KPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKK 167
K KE+ +++G ++F+T +E + + ++ G +T+ ++R D
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYY-------EQWGKLTDCVVMR--------DPAS 58
Query: 168 LRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYE--GRPDKNDLVAASKNPP 225
R++GF ++ F + +++A + +++GR + K A + E G+P + V
Sbjct: 59 KRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTV------- 111
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
+ LFVG + DT E LR +F+ G+I I + T +GK +GF F+ F D +
Sbjct: 112 -KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Query: 286 KDK---------SCRKIASRPIRMEYGEDRSKR 309
K RK SR E RS R
Sbjct: 171 LQKYHTINGHNAEVRKALSRQEMQEVQSSRSGR 203
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 66.6 bits (161), Expect = 6e-11
Identities = 52/259 (20%), Positives = 109/259 (42%), Gaps = 23/259 (8%)
Query: 53 GKVTIEELNAKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKE 112
G V +EE + +++S+ + E + + + D S + P
Sbjct: 91 GSVAVEE--TENSLESQDVSEGDESEGDASEG-DVSEGDESEGDVSEGAVSERAEFPEPS 147
Query: 113 KKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKG 172
++ ++VGN+A+D + + ++ G + +++ + + +++G
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLF-------EQAGTVEIAEVIY--------NRETDQSRG 192
Query: 173 FAYIDFKTEKQME-AVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFV 231
F ++ + + E AV + LNGR L + A RP++ A P+ ++V
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER----APRVYEPAFRVYV 248
Query: 232 GNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCR 291
GNL +D L + F G+++ R+ +TG+ +GF F+ D A+ +
Sbjct: 249 GNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308
Query: 292 KIASRPIRMEYGEDRSKRQ 310
+ R IR+ E+R R+
Sbjct: 309 NLEGRAIRVNVAEERPPRR 327
>ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 293
Score = 66.2 bits (160), Expect = 8e-11
Identities = 51/258 (19%), Positives = 112/258 (42%), Gaps = 29/258 (11%)
Query: 54 KVTIEELNAKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEK 113
K T+E+++ ++ + + E+TSN + + +E
Sbjct: 25 KKTMEKVSKSNSVSETESDSEAPTGSSSSGMEETSNLEGSSTEIEEETSSGSGEESRREN 84
Query: 114 -KFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKG 172
V++ +++D + D+ E ++ G + R+ +P+T ND+K RNKG
Sbjct: 85 PSLTVFIKGISYDLTEYDL-------KSEMEKIGKVA-----RVGIPMT-NDHK--RNKG 129
Query: 173 FAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVG 232
F Y++F E+ ++ + L + GR +++ ++ N ++V
Sbjct: 130 FGYVEFCKEEDVKKALKLDGTVFLGREVVV-------------NMAHPRANKERHTIYVS 176
Query: 233 NLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRK 292
N+ ++ + L+K+F+ GE++ + + D + KG+ F+DF ++ LK K +
Sbjct: 177 NIPYECDKRDLKKYFEGMGEVVGMSLPYDRDNNRLKGYGFVDFGNKEDYERVLKKKLVFE 236
Query: 293 IASRPIRMEYGEDRSKRQ 310
++ R Y +R R+
Sbjct: 237 DSTMYHRPAYKNNREDRR 254
>CE28911 [R] KOG0118 FOG: RRM domain
Length = 394
Score = 66.2 bits (160), Expect = 8e-11
Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 57/336 (16%)
Query: 4 SSKEVKKVDDAVSQ----VLKDPTKKRKAEDEIEI---DLNQSVPLSKK----------Q 46
+ K VK+ +AVS V + P K +K + + + D Q+ LS Q
Sbjct: 2 AKKVVKRKAEAVSADAEAVAEAPKKIKKQKPSLPVSEPDNYQAGGLSSLFGKSSEGAAVQ 61
Query: 47 KRLLRRGKVTIEELNAKYNIDSKSIEEYKKETA------------EKQDNEDTSNKKXXX 94
+ +++ KV + KY+ K+ EE + A E++ +E+ K+
Sbjct: 62 EEVVKGDKVIEKPKRRKYDPKKKAEEEKAADAAAAAEEVAPETEGEEKKDENKEGKRDRT 121
Query: 95 XXXXXXXXXKITSKPNK-EKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEG--GAITEK 151
K ++ + E V+VGNM T+ E +R I + D G ++ +
Sbjct: 122 KQRENRTLQKSNARASAAENALTVFVGNMPL-TMNEKSVRRIFS-----DFGTISSVRMR 175
Query: 152 DIVRINMPLTKNDNK---KLRNKGFA---YIDFKTEKQMEAVVGLSESALNGRNLLIKNA 205
+++ N LTK KL +K + Y+ F E+ +E + + + L+ + +
Sbjct: 176 NLLPANEKLTKRVTHLTGKLNDKQSSLTFYVKFGAEESVEKALKYNGTKLDDHVIRVDKV 235
Query: 206 GSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQ-HCGEIMRIRMATFEDT 264
GS + K+ +FVGNL F+ TED L F G + +R+ +DT
Sbjct: 236 GSKKKEFGKD-----------MAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDT 284
Query: 265 GKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRM 300
GK KGFAF++FK ++ + AL ++ K+ R +R+
Sbjct: 285 GKGKGFAFVNFKQDSSVSLALSMETI-KMEKRDLRI 319
>YOL041c [R] KOG0118 FOG: RRM domain
Length = 459
Score = 65.9 bits (159), Expect = 1e-10
Identities = 76/324 (23%), Positives = 137/324 (41%), Gaps = 51/324 (15%)
Query: 21 DPTKKRKAEDEIEIDLNQSVPLSKKQKRLLRRGKVTIEELNAKYNIDSKSIEEYKKETAE 80
D +K ++ ++ + + V L K +K + E+L A+Y + E AE
Sbjct: 58 DQEEKEASKPDVSDEQTEEVALPKVKKAKKSKRNDEDEDLEARY------YAKLLNEEAE 111
Query: 81 KQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFG--VWVGNMAFDTV------KEDII 132
+D++ T K K+ K ++ +K V++GN+ + KE
Sbjct: 112 AEDDKPTVTKTDETSVPLTSAAKKVDFKEDELEKAERTVFIGNILSTVITSKKVYKEFKK 171
Query: 133 RFIVAKTKENDEGGAITEKDIVRINMPLTKNDNK-------KLRNKGF--------AYID 177
F E +E G E++ + K+DN + R+ F A++
Sbjct: 172 LFGTNPIAETEESGNEKEEESSK------KSDNNEFAIESIRFRSISFDEALPRKVAFVQ 225
Query: 178 FKTEKQMEAV----VGLSESALNG--RNLLIKNAGSYEGRPDKNDLVA-ASKNPPSRILF 230
K K + + V ++SA+ NL NA ++ + D VA + + R +F
Sbjct: 226 QKFHKSRDTINAYIVYKNKSAVRKICSNL---NAVVFQDHHLRVDSVAHPAPHDKKRSIF 282
Query: 231 VGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSC 290
VGNL F+ E+ L KHF+ CG+I +R+ T KGFA++ FKD AL
Sbjct: 283 VGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKAL----- 337
Query: 291 RKIASRPIRMEYGEDRSKRQVRRR 314
+ +P++ + ED + ++ ++
Sbjct: 338 -LLNEKPMKSQKQEDENTKKPTKK 360
>Hs4504447 [R] KOG0118 FOG: RRM domain
Length = 341
Score = 65.5 bits (158), Expect = 1e-10
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 34/210 (16%)
Query: 111 KEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRN 170
KE+ +++G ++F+T +E + + ++ G +T+ ++R D R+
Sbjct: 5 KEQFRKLFIGGLSFETTEESLRNYY-------EQWGKLTDCVVMR--------DPASKRS 49
Query: 171 KGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYE--GRPDKNDLVAASKNPPSRI 228
+GF ++ F + +++A + +++GR + K A + E G+P + V +
Sbjct: 50 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTV--------KK 101
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LFVG + DT E LR +F+ G+I I + T +GK +GF F+ F D + K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Query: 289 ---------SCRKIASRPIRMEYGEDRSKR 309
RK SR E RS R
Sbjct: 162 YHTINGHNAEVRKALSRQEMQEVQSSRSGR 191
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 65.5 bits (158), Expect = 1e-10
Identities = 48/234 (20%), Positives = 101/234 (42%), Gaps = 24/234 (10%)
Query: 79 AEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAK 138
AE+++ ED S P ++ ++VGN+ +D + +
Sbjct: 77 AEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLF--- 133
Query: 139 TKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQME-AVVGLSESALNG 197
++ G + +++ + +++GF ++ T ++ E AV + +NG
Sbjct: 134 ----EQAGTVEISEVIY--------NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 181
Query: 198 RNLLIKNAGSYEGRPDKNDLV--AASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMR 255
R L + A RP++ V AA + ++VGNL +D L + F G+++
Sbjct: 182 RRLTVNRAAPRGSRPERQPRVYDAAFR------IYVGNLPWDVDSGRLERLFSEHGKVVD 235
Query: 256 IRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKR 309
R+ + +TG+ +GF F+ +E A+ + + R I++ E+R++R
Sbjct: 236 ARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 65.1 bits (157), Expect = 2e-10
Identities = 42/145 (28%), Positives = 77/145 (52%), Gaps = 12/145 (8%)
Query: 165 NKKLRNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
N+ ++KG+A+I+F + E EA+ ++ + GR + ++ G G P+ +++
Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP-RGSPN-------ARS 568
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
PS+ LFV LS DTTE+ L++ F +R R+ T +TG KGF F+DF E A
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKA 625
Query: 284 ALKDKSCRKIASRPIRMEYGEDRSK 308
A + +I + +++ + + +
Sbjct: 626 AKEAMEDGEIDGNKVTLDWAKPKGE 650
Score = 64.3 bits (155), Expect = 3e-10
Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 165 NKKLRNKGFAYIDFKTEKQMEAVVGLSESA-LNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
+K ++KG AYI+FKTE E + ++GR++ + Y G +N KN
Sbjct: 423 SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY----YTGEKGQNQDYRGGKN 478
Query: 224 PP----SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDET 279
S+ L + NLS+ TE+ L++ F+ I GK KG+AFI+F
Sbjct: 479 STWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFE 534
Query: 280 GATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRP----------ELDAREPRKPSFD 328
A AL + R+I R IR+E R R +P E E K SFD
Sbjct: 535 DAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD 593
Score = 60.5 bits (145), Expect = 4e-09
Identities = 55/246 (22%), Positives = 101/246 (40%), Gaps = 33/246 (13%)
Query: 67 DSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKK--FGVWVGNMAF 124
D + EE ++E E+ E +K K E F ++VGN+ F
Sbjct: 257 DDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNF 316
Query: 125 DTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQM 184
+ ++ I +ND +V + + +T+ F Y+DF++ + +
Sbjct: 317 NKSAPELKTGISDVFAKNDLA-------VVDVRIGMTRK---------FGYVDFESAEDL 360
Query: 185 EAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLR 244
E + L+ + G + ++ +P D + K +R L NL + T+D L+
Sbjct: 361 EKALELTGLKVFGNEIKLE-------KPKGKD---SKKERDARTLLAKNLPYKVTQDELK 410
Query: 245 KHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGE 304
+ F+ EI + GK KG A+I+FK E A ++K +I R I + Y
Sbjct: 411 EVFEDAAEIRLV-----SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 465
Query: 305 DRSKRQ 310
++ + Q
Sbjct: 466 EKGQNQ 471
>Hs4758542 [R] KOG0118 FOG: RRM domain
Length = 284
Score = 63.9 bits (154), Expect = 4e-10
Identities = 52/186 (27%), Positives = 86/186 (45%), Gaps = 29/186 (15%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
+I + N+E ++VG +++DT K+D+ + + G + + I K
Sbjct: 57 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFT-------KFGEVVDCTI--------KM 101
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
D R++GF +I FK +E V+ E L+GR + K A A K
Sbjct: 102 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA-------------MAMKK 148
Query: 224 PPSRILFVGNLSFDT-TEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGAT 282
P + +FVG L+ ++ TE+ +R++F GEI I + K +GF FI FK+E
Sbjct: 149 DPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 208
Query: 283 NALKDK 288
L+ K
Sbjct: 209 KVLEKK 214
>Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 268
Score = 63.9 bits (154), Expect = 4e-10
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 25/176 (14%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
K S E+ +++G ++F+T E + ++ G +T D V + P TK
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESL-------RSHFEQWGTLT--DCVVMRDPNTK- 52
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEG--RPDKNDLVAAS 221
R++GF ++ + T ++++A + ++GR + K A S E RPD + V
Sbjct: 53 -----RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPDAHLTV--- 104
Query: 222 KNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+ +FVG + DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 105 -----KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155
>Hs14110420 [R] KOG0118 FOG: RRM domain
Length = 355
Score = 63.9 bits (154), Expect = 4e-10
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 111 KEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRN 170
+ +++ +++G +++DT K+D+ + + G + + + K D R+
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYF-------SKFGEVVDCTL--------KLDPITGRS 137
Query: 171 KGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILF 230
+GF ++ FK + ++ V+ E LNG+ + K A + + +K P +I F
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK-----------TKEPVKKI-F 185
Query: 231 VGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
VG LS DT E+ +R++F GE+ I + T K +GF FI FK+E ++ K
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
>Hs14110414 [R] KOG0118 FOG: RRM domain
Length = 306
Score = 63.9 bits (154), Expect = 4e-10
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 111 KEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRN 170
+ +++ +++G +++DT K+D+ + + G + + + K D R+
Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYF-------SKFGEVVDCTL--------KLDPITGRS 137
Query: 171 KGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILF 230
+GF ++ FK + ++ V+ E LNG+ + K A + + +K P +I F
Sbjct: 138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK-----------TKEPVKKI-F 185
Query: 231 VGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
VG LS DT E+ +R++F GE+ I + T K +GF FI FK+E ++ K
Sbjct: 186 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
>Hs14110404 [R] KOG0118 FOG: RRM domain
Length = 331
Score = 63.9 bits (154), Expect = 4e-10
Identities = 52/186 (27%), Positives = 86/186 (45%), Gaps = 29/186 (15%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
+I + N+E ++VG +++DT K+D+ + + G + + I K
Sbjct: 57 QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFT-------KFGEVVDCTI--------KM 101
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
D R++GF +I FK +E V+ E L+GR + K A A K
Sbjct: 102 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA-------------MAMKK 148
Query: 224 PPSRILFVGNLSFDT-TEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGAT 282
P + +FVG L+ ++ TE+ +R++F GEI I + K +GF FI FK+E
Sbjct: 149 DPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 208
Query: 283 NALKDK 288
L+ K
Sbjct: 209 KVLEKK 214
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 63.9 bits (154), Expect = 4e-10
Identities = 30/86 (34%), Positives = 52/86 (59%)
Query: 220 ASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDET 279
AS + R +FVGN+ +D TE+ LR+ G ++ R+ T +TGK KG+ F ++KDE
Sbjct: 2 ASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
Query: 280 GATNALKDKSCRKIASRPIRMEYGED 305
A +A ++ +I R +R+++ E+
Sbjct: 62 TALSARRNLQSYEINGRQLRVDFAEN 87
>At2g46610 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 250
Score = 63.5 bits (153), Expect = 5e-10
Identities = 60/233 (25%), Positives = 98/233 (41%), Gaps = 52/233 (22%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
V+VGN +DT D+ R + G + D+ G+A++
Sbjct: 4 VYVGNFDYDTRHSDLERLF-------SKFGRVKRVDM----------------KSGYAFV 40
Query: 177 DFKTEKQMEAVVGLSESALNG---RNLLIKNAGSYEGRPDK-NDLVAASKNPPSRILFVG 232
F+ E+ E + +++ G R L ++ A ++G K D A S P++ LFV
Sbjct: 41 YFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVI 100
Query: 233 NLS-FDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCR 291
N T E + +HF+ G+++ +RM + FAF+ F + AT AL
Sbjct: 101 NFDPIRTRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKALDSTHNS 152
Query: 292 KIASRPIRMEYG-------EDR---SKRQ------VRRRPELDAREPRKPSFD 328
K+ + + +EY EDR S+R+ RRRP D R P +D
Sbjct: 153 KLLDKVVSVEYALREAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYD 205
>Hs13654587 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 63.2 bits (152), Expect = 7e-10
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
K S E+ +++G ++F+T E + ++ G +T D V + P TK
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESL-------RSHFEQWGTLT--DCVVMRDPNTK- 52
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
R++GF ++ + T ++++A + + ++GR + K A S E + K
Sbjct: 53 -----RSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK- 106
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+FVG + DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 107 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155
>At1g48920 [K] KOG4210 Nuclear localization sequence binding protein
Length = 557
Score = 63.2 bits (152), Expect = 7e-10
Identities = 68/310 (21%), Positives = 120/310 (37%), Gaps = 50/310 (16%)
Query: 3 DSSKEVKKVDDAVSQVLKDPTK-KRKAEDEIEIDLNQSVPLSKKQKRLLRRG-------- 53
DSS E + +++ K K ++D+ + D P +KK +
Sbjct: 161 DSSSEDEPAKKPAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSD 220
Query: 54 ----------KVTIEELNAKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXX-----XXXX 98
K ++ + K + S S E + E E +D E+T KK
Sbjct: 221 EDSDEESEDEKPAQKKADTKASKKSSSDESSESEEDESEDEEETPKKKSSDVEMVDAEKS 280
Query: 99 XXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINM 158
K S P ++ N++F+ + D+ F E G + + VR +
Sbjct: 281 SAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFF-------KEAGEVVD---VRFS- 329
Query: 159 PLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLV 218
T D+ R GF +++F + ++ + + L GR + + A R ++
Sbjct: 330 --TNRDDGSFR--GFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFT 385
Query: 219 AASKNPPS-------RILFV----GNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKC 267
S N S + +FV +LS D ++ LR+HF CGEI + + DTG
Sbjct: 386 PQSGNFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNS 445
Query: 268 KGFAFIDFKD 277
KG A+++F +
Sbjct: 446 KGIAYLEFSE 455
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
S+ LF NLSF+ + F+ GE++ +R +T D G +GF ++F A AL
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
Query: 286 KDKSCRKIASRPIRMEYGEDRSKRQVR 312
+ R + R IR++ ++R +R R
Sbjct: 356 EFHG-RPLLGREIRLDIAQERGERGER 381
>Hs13650572 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 62.4 bits (150), Expect = 1e-09
Identities = 48/185 (25%), Positives = 84/185 (44%), Gaps = 21/185 (11%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
K S E+ +++G ++F+T E + ++ G +T D V + P TK
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESL-------RSHFEQWGTLT--DCVVMRDPNTK- 52
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
R++GF ++ + T ++++A + ++GR + K A S E + K
Sbjct: 53 -----RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK- 106
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
+FVG + DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 107 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 284 ALKDK 288
+ K
Sbjct: 162 TVIQK 166
>Hs4504445 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 62.0 bits (149), Expect = 1e-09
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
K S E+ +++G ++F+T E + ++ G +T D V + P TK
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESL-------RSHFEQWGTLT--DCVVMRDPNTK- 52
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
R++GF ++ + T ++++A + ++GR + K A S E + K
Sbjct: 53 -----RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK- 106
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+FVG + DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 107 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155
>Hs14043070 [R] KOG0118 FOG: RRM domain
Length = 372
Score = 62.0 bits (149), Expect = 1e-09
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
K S E+ +++G ++F+T E + ++ G +T D V + P TK
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESL-------RSHFEQWGTLT--DCVVMRDPNTK- 52
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
R++GF ++ + T ++++A + ++GR + K A S E + K
Sbjct: 53 -----RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK- 106
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+FVG + DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 107 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155
>Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 60.8 bits (146), Expect = 3e-09
Identities = 48/174 (27%), Positives = 79/174 (44%), Gaps = 21/174 (12%)
Query: 104 KITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKN 163
K S E+ +++G ++F+T E + ++ G +T D V + P TK
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESL-------RSHFEQRGTLT--DCVVMRDPNTKC 53
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
GF ++ + T K++EA + ++GR + K A S E + K
Sbjct: 54 ST------GFGFVTYATVKEVEAAMNARPQKVDGRVVEPKRAVSREDSQRPGAHLTVKK- 106
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+FVG + DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 107 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155
>At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 271
Score = 60.5 bits (145), Expect = 4e-09
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 42/222 (18%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
V+VGN ++T + D+ R D+ G + D+ G+A++
Sbjct: 4 VFVGNFEYETRQSDLERLF-------DKYGRVDRVDM----------------KSGYAFV 40
Query: 177 DFKTEKQMEAVVGLSESALNG---RNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGN 233
F+ E+ E + ++ G R L ++ A GRP + D A S P++ LFV N
Sbjct: 41 YFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRP-RGDAKAPSNLKPTKTLFVIN 99
Query: 234 LS-FDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRK 292
T E + KHF+ G++ +R+ + F+F+ F+ + AT AL+ K
Sbjct: 100 FDPIRTKEHDIEKHFEPYGKVTNVRIR--------RNFSFVQFETQEDATKALEATQRSK 151
Query: 293 IASRPIRMEYG----EDRSKRQVRRRP--ELDAREPRKPSFD 328
I R + +EY ++R R R P L R+PS D
Sbjct: 152 ILDRVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPD 193
>SPBC13A2.01c [A] KOG0121 Nuclear cap-binding protein complex subunit CBP20 (RRM
superfamily)
Length = 182
Score = 59.3 bits (142), Expect = 9e-09
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 214 KNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFI 273
KNDL A S ++VGNLSF TTE+ + F CGEI RI M T GF F+
Sbjct: 19 KNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFV 78
Query: 274 DFKDETGATNALKDKSCRKIASRPIR--MEYGEDRSKRQVRRRPELDAREPRKPSFD 328
++ + A ++LK S + R IR +++G + ++ R R+ + FD
Sbjct: 79 EYFENQDALDSLKYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEFD 135
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 59.3 bits (142), Expect = 9e-09
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 227 RILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
R +FVGN+S+D +ED +R F G ++ I+M +TGK KG+ FI+F D A A++
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 287 DKSCRKIASRPIRME 301
+ + +++ R +R++
Sbjct: 78 NLNGYELSGRILRVD 92
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 59.3 bits (142), Expect = 9e-09
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LF+G LS+ T + LR F H G+++ ++ +TG+ +GF F++F DE AT A+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 289 SCRKIASRPIRMEYGEDR 306
+++ R IR+ DR
Sbjct: 97 DGKELNGRHIRVNPANDR 114
>7299788 [R] KOG0118 FOG: RRM domain
Length = 385
Score = 59.3 bits (142), Expect = 9e-09
Identities = 33/114 (28%), Positives = 60/114 (51%), Gaps = 6/114 (5%)
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
D K R++GF +I + ++ ++GR + K A + ++ + +
Sbjct: 58 DPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRA------VPRQEIDSPNAG 111
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+ LFVG L D E+ LR++F+ G+I+ + + + +DTGK +GFAFI+F D
Sbjct: 112 ATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDD 165
>YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 296
Score = 58.9 bits (141), Expect = 1e-08
Identities = 24/83 (28%), Positives = 53/83 (62%)
Query: 223 NPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGAT 282
NPPSR++++G++ +D TE+ + + G ++ ++M TG+ KG+AFI+F+D +
Sbjct: 14 NPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSA 73
Query: 283 NALKDKSCRKIASRPIRMEYGED 305
+A+++ + ++ SR ++ Y +
Sbjct: 74 SAVRNLNGYQLGSRFLKCGYSSN 96
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 58.9 bits (141), Expect = 1e-08
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 227 RILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
R +FVGN+ ++ TE+ L+ F G ++ R+ +TGK KG+ F +++D+ A +A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 287 DKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPSFD 328
+ + R+ + R +R++ ++ EL + P P D
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKE-----ELKSLGPAAPIID 112
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 58.5 bits (140), Expect = 2e-08
Identities = 47/172 (27%), Positives = 83/172 (47%), Gaps = 10/172 (5%)
Query: 156 INMPLTKNDNKKLRNKGFAYIDF-KTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPD- 213
++ L K+ + KL KGF ++++ K E ++AV L++S LNG L + A R
Sbjct: 246 VSASLEKDADGKL--KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHV 303
Query: 214 -KNDLVAASKNPPSRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCK 268
K A ++ LFV NL ++ L + F G I ++ E+ GK K
Sbjct: 304 LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSK 362
Query: 269 GFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAR 320
GF F+ F AT A+ +K+ + +A +P+ + + + R+ + ++ AR
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 414
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 58.2 bits (139), Expect = 2e-08
Identities = 46/162 (28%), Positives = 80/162 (48%), Gaps = 16/162 (9%)
Query: 153 IVRINMPLTKNDNKKLRNKGFAYIDFKTEKQME-AVVGLSESALNGRNLLIKNAGSYEGR 211
+V +NMP D ++GF +++F E+ + A+ L+ L G+ + + A ++E
Sbjct: 49 VVSVNMP---KDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHE-- 103
Query: 212 PDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRI-RMATFEDTGKCKGF 270
KN V A+ +FVGNL + E LL F G I+++ ++ D+G KGF
Sbjct: 104 --KNMDVGAN-------IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGF 154
Query: 271 AFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVR 312
AFI+F + AL+ + + + +R I + Y R + R
Sbjct: 155 AFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGER 196
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/87 (32%), Positives = 48/87 (54%)
Query: 220 ASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDET 279
+S PS LF+G LS+ E L+ F GE+ +R+A + +G+ +GF F+DF +E
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 280 GATNALKDKSCRKIASRPIRMEYGEDR 306
A +A + + RP+R+ + +R
Sbjct: 94 DALSAKDAMDGKGLLGRPLRISFALER 120
>Hs17433768 [R] KOG0118 FOG: RRM domain
Length = 238
Score = 57.8 bits (138), Expect = 3e-08
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 162 KNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAAS 221
++ N KL ++GF ++ + T ++++A + ++GR + K A S E +
Sbjct: 2 RDPNTKL-SRGFGFVTYTTVEEVDAAMNARPHEVDGRVVEPKRAVSREDSQRPGAHLTVK 60
Query: 222 KNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
K +FVG + DT E LR +F+ CG++ I + T +GK +GFAF+ F D
Sbjct: 61 K------IFVGGIKEDTEEHHLRDYFELCGKMELIEIITDRGSGKKRGFAFVTFDD 110
>CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 305
Score = 57.8 bits (138), Expect = 3e-08
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 33/179 (18%)
Query: 106 TSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDN 165
++K N++KK ++VG ++ + ED+ + + G + + + K D
Sbjct: 22 STKGNEDKK--IFVGGISPEVNNEDL-------SSHFTQYGEVAQAQV--------KYDR 64
Query: 166 KKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPP 225
R++GFA+++F T + + + E + G+++ +K A S E +
Sbjct: 65 TNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKK------------- 111
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
+FVG L D +E LR HF+ G++ I + T + FAFI F++E A A
Sbjct: 112 ---VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>7301687 [R] KOG0118 FOG: RRM domain
Length = 365
Score = 57.8 bits (138), Expect = 3e-08
Identities = 37/126 (29%), Positives = 62/126 (48%), Gaps = 12/126 (9%)
Query: 152 DIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGR 211
D+V + P TK R++GF +I + ++ ++GR + K A
Sbjct: 59 DVVVMKDPRTK------RSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRA------ 106
Query: 212 PDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFA 271
+ D+ + + + LFVG L D E +R +FQH G I+ I + ++TGK +GFA
Sbjct: 107 VPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFA 166
Query: 272 FIDFKD 277
F++F D
Sbjct: 167 FVEFDD 172
>7301686 [R] KOG0118 FOG: RRM domain
Length = 363
Score = 57.8 bits (138), Expect = 3e-08
Identities = 37/126 (29%), Positives = 62/126 (48%), Gaps = 12/126 (9%)
Query: 152 DIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGR 211
D+V + P TK R++GF +I + ++ ++GR + K A
Sbjct: 58 DVVVMKDPRTK------RSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRA------ 105
Query: 212 PDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFA 271
+ D+ + + + LFVG L D E +R +FQH G I+ I + ++TGK +GFA
Sbjct: 106 VPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFA 165
Query: 272 FIDFKD 277
F++F D
Sbjct: 166 FVEFDD 171
>At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein
Length = 849
Score = 57.4 bits (137), Expect = 4e-08
Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 29/296 (9%)
Query: 5 SKEVKKVDDAVSQVLKDPTKKRKAEDEIEIDLNQSVPL--------SKKQKRLLRRGKVT 56
+++ K+ S V K K++ E +I + L+ P + Q+ LL
Sbjct: 187 AEQQKRQSTQHSTVDKKDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNLLSHANGR 246
Query: 57 IEELNAKYNIDSKSIEEYKKETAEKQDN----EDTSNKKXXXXXXXXXXXXKITSKPNKE 112
N + D+ ++ +K T +K+D D ++++ S+ +K+
Sbjct: 247 KHRENVEL-FDATQQQQLEKTTVDKKDTTVNASDGNSEQKKVDLLVSSGVANGYSQAHKK 305
Query: 113 KKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKG 172
+K +T K ++++ E +GG + + + + KK + +
Sbjct: 306 RKL-----ETCDETWKREVVQ------AEEAKGGGEQKSESKKAKKQDKEKKRKKDKKQT 354
Query: 173 FAYIDFKTEKQ--MEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILF 230
+ DF+ +K+ + +V S+ L NL+ K A R L +A ++ R +F
Sbjct: 355 KSDSDFEHDKEDIKQLLVAYSKEELV--NLIYKTAEK-GSRLISAILESADRDIAQRNIF 411
Query: 231 VGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
V +DTT++ L+ F+ GEI + +DTG+ KG+ F+ FK GA ALK
Sbjct: 412 VRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 562
Score = 57.0 bits (136), Expect = 5e-08
Identities = 47/190 (24%), Positives = 92/190 (47%), Gaps = 27/190 (14%)
Query: 137 AKTKEN--DEGGAITE--KDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSE 192
+KTKE +E +TE D++ + P D+KK +N+GF +++++ K
Sbjct: 253 SKTKEQILEEFSQVTEGLTDVILYHQP----DDKK-KNRGFCFLEYEDHK---TAAQARR 304
Query: 193 SALNGRNLLIKNAGSYEGRP---DKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQH 249
++G+ + N G+ E D + V A ++LFV NL+ TE++L K F
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV----KVLFVRNLANTVTEEILEKAFSQ 360
Query: 250 CGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKR 309
G++ R++ K K +AFI F + GA A+++ + + + I + + + ++
Sbjct: 361 FGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 412
Query: 310 QVRRRPELDA 319
+ R+ + A
Sbjct: 413 RKERKAQRQA 422
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 57.0 bits (136), Expect = 5e-08
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LFVG LS+ T + L++ F GE+ + +TG+ +GF F+ F E A NA+K+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 289 SCRKIASRPIRMEYGEDRS 307
+++ R IR+ +RS
Sbjct: 97 DGKELNGRQIRVNLATERS 115
>At2g22100 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 57.0 bits (136), Expect = 5e-08
Identities = 52/183 (28%), Positives = 83/183 (44%), Gaps = 12/183 (6%)
Query: 147 AITEKDIVRINMPLTKNDNK----KLRNKGFAYIDFKTEKQMEAVVGLSESALNGR--NL 200
A+ EK I + + +K + K K ++K + D E E + L ES NL
Sbjct: 30 AVREKKISKKHKSKSKEEEKPEKSKKKSKKYEESDSDFEFDKEDIKNLLESYSKEELINL 89
Query: 201 LIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMAT 260
+ K A + +A ++ R +FV L +DTT + L+ F+ GEI +
Sbjct: 90 IYKTAEK-GSKLISAVFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVM 148
Query: 261 FEDTGKCKGFAFIDFKDETGATNALKDKS----CRKIASRPIR-MEYGEDRSKRQVRRRP 315
+DTG+ KGF F+ FK GA ALK+ R ++ P R G+ R ++Q
Sbjct: 149 DKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 208
Query: 316 ELD 318
++D
Sbjct: 209 KID 211
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 57.0 bits (136), Expect = 5e-08
Identities = 50/223 (22%), Positives = 105/223 (46%), Gaps = 33/223 (14%)
Query: 113 KKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEK---------DIVRINMPLTKN 163
++FG G T+ + R V +N + + E+ +++ + P
Sbjct: 263 EEFGKLTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSP---- 318
Query: 164 DNKKLRNKGFAYIDFKTEKQMEAV---VGLSESALNGRNLLIKNAGSYEGRPDKNDLVAA 220
D+KK +N+GF ++++++ K +G + G ++++ A E PD+ +
Sbjct: 319 DDKK-KNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQE-EPDEQTMSKV 376
Query: 221 SKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETG 280
++L+V NL+ D +ED L++ F+ G++ R++ K K +AFI F+D
Sbjct: 377 ------KVLYVRNLTQDVSEDKLKEQFEQYGKVERVK--------KIKDYAFIHFEDRDS 422
Query: 281 ATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPR 323
A A++ + ++I + I + + S ++ ++ L ARE R
Sbjct: 423 AVEAMRGLNGKEIGASNIEVSLAKPPSDKK-KKEEILRARERR 464
>SPAC16E8.06c [R] KOG0118 FOG: RRM domain
Length = 438
Score = 56.6 bits (135), Expect = 6e-08
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 31/312 (9%)
Query: 27 KAEDEIEIDLNQSVPLSKKQKRLLRRGKVTIEELNAKY--NIDSKSIEEYKKETAEK-QD 83
+A + IE D + + K K+ ++ + +++ KY + ++ EE K++A D
Sbjct: 65 EAAETIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLIND 124
Query: 84 NEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKEND 143
ED S K + + EK +A + K D F+ N
Sbjct: 125 EEDKSPAKQSVLEERTSQEDVKSEREVAEK--------LANELEKSDKTVFV-----NNL 171
Query: 144 EGGAITEK----DIVRINMPLTKNDNKKLRNKGF--------AYIDFKTEKQMEAVVG-- 189
+T K D+ + D+ + R+ F A+ + K + + V
Sbjct: 172 PARVVTNKGDYKDLTKHFRQFGAVDSIRFRSLAFSEAIPRKVAFFEKKFHSERDTVNAYI 231
Query: 190 LSESALNGRNLLIKNAGSYEGRPDKNDLVA-ASKNPPSRILFVGNLSFDTTEDLLRKHFQ 248
+ + + R+ L N + R + D V+ R +FVGNL+F+ E+ L ++F
Sbjct: 232 VFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFG 291
Query: 249 HCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSK 308
CG I +R+ T KGFA+I FKD G AL + R +R+ +
Sbjct: 292 DCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKSTKP 351
Query: 309 RQVRRRPELDAR 320
+ + R D +
Sbjct: 352 KSITRSKRGDEK 363
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 56.6 bits (135), Expect = 6e-08
Identities = 23/84 (27%), Positives = 50/84 (59%)
Query: 227 RILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
R +FVGN+ ++ TE+ L+ F G ++ R+ +TGK KG+ F +++D+ A +A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 287 DKSCRKIASRPIRMEYGEDRSKRQ 310
+ + R+ + R +R++ ++
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKE 99
>Hs22049560 [R] KOG0118 FOG: RRM domain
Length = 222
Score = 56.6 bits (135), Expect = 6e-08
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
+++G ++F+T E + ++ G + D V + P TK ++GF ++
Sbjct: 16 LFIGGLSFETTNESL-------RSHFEQWGTLM--DCVVMRDPNTKC------SRGFGFV 60
Query: 177 DFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSF 236
+ T ++++A + ++GR + K A S E + K +FVG +
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVESKRAVSREDSQRPGAHLTVKK------IFVGGIKE 114
Query: 237 DTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
DT E LR +F+ G+I I + T +GK +GFAF+ F D
Sbjct: 115 DTKEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155
>Hs22042102 [R] KOG0118 FOG: RRM domain
Length = 378
Score = 56.6 bits (135), Expect = 6e-08
Identities = 42/161 (26%), Positives = 79/161 (48%), Gaps = 21/161 (13%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
+++G ++F+T + + + ++ G +T D V + P TK R++GF ++
Sbjct: 37 LFIGGLSFETTDDSL-------REHFEKWGTLT--DCVVMRDPQTK------RSRGFGFV 81
Query: 177 DFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSF 236
+ ++++A + ++GR + K A S E D V + + +FVG +
Sbjct: 82 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE------DSVKPGAHLTVKKIFVGGIKE 135
Query: 237 DTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
DT E LR +F+ G+I I + +GK +GFAF+ F D
Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 56.6 bits (135), Expect = 6e-08
Identities = 37/150 (24%), Positives = 83/150 (54%), Gaps = 12/150 (8%)
Query: 170 NKGFAYIDFKTEKQME-AVVGLSESALNGRNLLIKNAGSYEGRPDKN-DLVAASKNPPSR 227
+KG+ ++ F+T + E A+ ++ LNGR + + G ++ R ++ +L A +K P+
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV---GQFKSRKEREAELGARAKEFPN- 192
Query: 228 ILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+++ N D ++ L+ F G + +++ T +++GK KGF F+ F+ A A+ +
Sbjct: 193 -VYIKNFGEDMDDERLKDLFGKFGPALSVKVMT-DESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 288 KSCRKIASRPIRMEYGEDRSKRQVRRRPEL 317
+ +++ + I + R++++V R+ EL
Sbjct: 251 MNGKELNGKQIYV----GRAQKKVERQTEL 276
Score = 50.1 bits (118), Expect = 6e-06
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 169 RNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNAGSYEGRPD--KNDLVAASKNPP 225
++KGF ++ F+ E +AV ++ LNG+ + + A R K ++
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288
Query: 226 SRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
+R L+V NL ++ LRK F G I ++ + G+ KGF F+ F A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 282 TNALKDKSCRKIASRPIRMEYGEDRSKRQ 310
T A+ + + R +A++P+ + + + +RQ
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRKEERQ 375
>At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 600
Score = 56.6 bits (135), Expect = 6e-08
Identities = 67/309 (21%), Positives = 126/309 (40%), Gaps = 46/309 (14%)
Query: 21 DPTKKRKAEDEIEIDLNQSVPLSKKQKRLLRRGKVTIEELNAKYNIDSKSIEEYKKETAE 80
D ++ + E + D ++ +K RR + E ++ S IE ++ET +
Sbjct: 96 DKEERNGKDRERDRDKDRDSKGRDHEKDRSRRSRSRSERHRSQEREKSLEIEPKERETKD 155
Query: 81 K-QDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKFGVWVGNMAFDTVKEDIIRFIVAKT 139
+ +D +KK + + P ++++ V+ +A + D+ F
Sbjct: 156 RDRDRRRHKDKKEDKV--------EPEADPERDQRT-VFAYQIALRATERDVYEFFSRAG 206
Query: 140 KENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRN 199
K D VRI M D R++G Y++F + + LS L G+
Sbjct: 207 KVRD----------VRIIM-----DRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQP 251
Query: 200 LLIKNAGSYEGRPDKNDLVAASK------NPPSRILFVGNLSFDTTEDLLRKHFQHCGEI 253
+++K + + + A + + +R L+VGNL + +ED LRK F+ G +
Sbjct: 252 VMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSV 311
Query: 254 MRIRMATFEDTGKCKGFAFID--------------FKDETGATNALKDKSCRKIASRPIR 299
+++ ++TG CKGF F+ F A NAL +IA R I+
Sbjct: 312 ELVQVPR-DETGLCKGFGFVQVGSAVILFFFKTFKFARLEDARNALNLNGQLEIAGRAIK 370
Query: 300 MEYGEDRSK 308
+ D+++
Sbjct: 371 VSAVTDQTE 379
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 56.6 bits (135), Expect = 6e-08
Identities = 23/75 (30%), Positives = 49/75 (64%)
Query: 227 RILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
R +FVGN+ ++ TE+ L++ F G ++ +++ ++GK KGF F ++KD+ A +A++
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 287 DKSCRKIASRPIRME 301
+ + +I R +R++
Sbjct: 76 NLNGYEIGGRTLRVD 90
>Hs5031693 [R] KOG0118 FOG: RRM domain
Length = 269
Score = 56.2 bits (134), Expect = 8e-08
Identities = 39/161 (24%), Positives = 79/161 (48%), Gaps = 21/161 (13%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
+++G ++F+T + + + ++ G +T+ ++R D + R++GF ++
Sbjct: 37 LFIGGLSFETTDDSL-------REHFEKWGTLTDCLVMR--------DPQTKRSRGFGFV 81
Query: 177 DFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSF 236
+ +++A +G ++GR + K A S E D V + + +FVG++
Sbjct: 82 TYSCVTEVDAAIGARPFKVDGRVVEPKRAVSRE------DSVKPGAHLTVKKIFVGSIKE 135
Query: 237 DTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
DT E LR +F+ G+I I + +GK +GFA + F D
Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFASVTFDD 176
>Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 614
Score = 56.2 bits (134), Expect = 8e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 227 RILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
+ LFV +++DTTE LR+ F+ G I RI M + +GK +G+AFI+++ E +A K
Sbjct: 280 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 339
Query: 287 DKSCRKIASRPIRMEYGEDRSKRQVRRR 314
+KI R + ++ R+ + R R
Sbjct: 340 HADGKKIDGRRVLVDVERGRTVKGWRPR 367
>Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 437
Score = 56.2 bits (134), Expect = 8e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 227 RILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
+ LFV +++DTTE LR+ F+ G I RI M + +GK +G+AFI+++ E +A K
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 287 DKSCRKIASRPIRMEYGEDRSKRQVRRR 314
+KI R + ++ R+ + R R
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGWRPR 190
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
++VGN F TTE+ L F G+I +R+ +TG+ +GFAFI+F +E A A++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 289 SCRKIASRPIRM 300
+ + RP+R+
Sbjct: 67 NGAEFNGRPLRV 78
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 56.2 bits (134), Expect = 8e-08
Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 36/237 (15%)
Query: 104 KITSKPNKEKKF-GVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTK 162
K T + E+K+ +++ N+ D V ED++R A E G I +++ + K
Sbjct: 189 KKTDRVKPEEKYTNLYMKNLDAD-VSEDLLREKFA------EFGKI-------VSLAIAK 234
Query: 163 NDNKKLRNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNAGS-----------YEG 210
++N+ R G+A+++F E A ++ + + L + A ++
Sbjct: 235 DENRLCR--GYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292
Query: 211 RPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGF 270
+ ++ ++A N ++V N++ TE+ LRKHF CG I ++ ++ GK KGF
Sbjct: 293 KHEEQKMIAKVSN-----IYVKNVNVAVTEEELRKHFSQCGTITSTKLMC-DEKGKSKGF 346
Query: 271 AFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAR-EPRKPS 326
F+ F A +A+K + +P+ + + + R+++ + + R E RK S
Sbjct: 347 GFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSS 403
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 55.8 bits (133), Expect = 1e-07
Identities = 36/139 (25%), Positives = 71/139 (50%), Gaps = 2/139 (1%)
Query: 165 NKKLRNKGFAYIDFKTEKQ-MEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
N++ R++G + + K+ M A+ L + GR L ++ + + A
Sbjct: 217 NQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHG 276
Query: 224 PPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATN 283
P S ++VGNL + T++ L F G ++R R+A +E TG+ KGF + F++E A +
Sbjct: 277 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIA-YEPTGRSKGFGVVQFENENDAAS 335
Query: 284 ALKDKSCRKIASRPIRMEY 302
+++ + + RP+++ Y
Sbjct: 336 SIEKLNGYRYGGRPLQLSY 354
>Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 633
Score = 55.8 bits (133), Expect = 1e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 33/187 (17%)
Query: 138 KTKEN--DEGGAITEK--DIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSES 193
KTKEN +E +TE D++ + P D+KK +N+GF +++++ K S
Sbjct: 257 KTKENILEEFSKVTEGLVDVILYHQP----DDKK-KNRGFCFLEYEDHK----------S 301
Query: 194 ALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPS------RILFVGNLSFDTTEDLLRKHF 247
A R L+ G + + P ++LFV NL+ TE++L K F
Sbjct: 302 AAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSF 361
Query: 248 QHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRS 307
G++ R++ K K +AF+ F+D A A+ + + ++I I + +
Sbjct: 362 SEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPD 413
Query: 308 KRQVRRR 314
K++ R+
Sbjct: 414 KKRKERQ 420
>CE17059 [R] KOG0118 FOG: RRM domain
Length = 346
Score = 55.8 bits (133), Expect = 1e-07
Identities = 52/202 (25%), Positives = 94/202 (45%), Gaps = 23/202 (11%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
++VG + +T +D++R ++ G IT DI+ + P TK R++GF ++
Sbjct: 25 IFVGGLTSNTT-DDLMREFYSQF------GEIT--DIIVMRDPTTK------RSRGFGFV 69
Query: 177 DFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSF 236
F + +++A + ++G+ + K A R DKN + N ++ L+V +
Sbjct: 70 TFSGKTEVDAAMKQRPHIIDGKTVDPKRAVP---RDDKN---RSESNVSTKRLYVSGVRE 123
Query: 237 DTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASR 296
D TED+L ++F G + + + + T K +GF F+ F D + KS R
Sbjct: 124 DHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHR 183
Query: 297 -PIRMEYGEDR-SKRQVRRRPE 316
+R +D SK Q+ R E
Sbjct: 184 CDVRKGLSKDEMSKAQMNRDRE 205
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 55.8 bits (133), Expect = 1e-07
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
++VGN F TTED L +F G + +R+ +TG+ +GFAF++F +E A A+
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 289 SCRKIASRPIRMEYGEDRS 307
+ R +R+ ++R+
Sbjct: 66 NGVDFNGRALRVNLAQNRN 84
>CE05167 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 836
Score = 55.8 bits (133), Expect = 1e-07
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 109 PNKEKKFGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKL 168
P E ++V N+ F T +++I + I EG A ++ + N L
Sbjct: 587 PGTEDARTIFVSNLDFTTTEDEIRQAI--------EGVA---------SIRFARKANSDL 629
Query: 169 RNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRI 228
++GFAY+ + +++ + + + GR + I P+K S
Sbjct: 630 VHRGFAYVVMENDQKAQQALLKDRVPVKGRPMFIS-----ANDPEKRVGFKFSTTLEKSK 684
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
+FV N+ F T+D L+ F G + +R T +D GK KG AF+DF E A
Sbjct: 685 VFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKD-GKPKGIAFVDFDTEASA 736
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 55.8 bits (133), Expect = 1e-07
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LF+G +++ ED LR+ F GE++ R+ +TG+ +GF F+ F A++A++
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 289 SCRKIASRPIRMEYGEDRS 307
R + R +++ Y DR+
Sbjct: 102 DGRDLHGRVVKVNYANDRT 120
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 55.8 bits (133), Expect = 1e-07
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 213 DKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAF 272
D + +S + P L+V LSF TTED LR F+ G ++ + M + + KGFAF
Sbjct: 63 DSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAF 122
Query: 273 IDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPSFDIKT 331
+ ++ E A A++ + + R I +E + RS R +P D +P+ +T
Sbjct: 123 LRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMS-RAKPRRDFPKPQSKPRTFRT 180
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 55.5 bits (132), Expect = 1e-07
Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 169 RNKGFAYIDFKTEKQMEAVV-GLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSR 227
+++GFA++ + ++ L + GR L + A + +P+K L +++
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFAD--KPKPNKEPLYPETEHK--- 178
Query: 228 ILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
LFVGNLS+ T + L F+ CG+++ R+ DTG+ +G+ F+ + + AL+
Sbjct: 179 -LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 288 KSCRKIASRPIRMEYGEDR 306
++ R IR+ + +
Sbjct: 238 LDGFELEGRAIRVNLAQGK 256
>7294907 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 918
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 8/110 (7%)
Query: 209 EGRPDKNDLVA--ASKNP-PSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTG 265
+ +PD+ D A A P P+ LF+ NL+F T ++ + KHF+H G I + +A D
Sbjct: 658 DAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPE 717
Query: 266 -----KCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQ 310
K G+ FI FK + A +ALK+ I P+ ++ + K Q
Sbjct: 718 NPREFKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQ 767
>Hs17458873 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 55.1 bits (131), Expect = 2e-07
Identities = 38/159 (23%), Positives = 74/159 (45%), Gaps = 21/159 (13%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
+++G + F+T E + +++ G +TE ++R D R++GF ++
Sbjct: 16 LFIGGLRFETSDESL-------RSHSEQWGTLTECVVMR--------DPNTNRSRGFGFV 60
Query: 177 DFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSF 236
+ T ++++A + + GR + K A S E + K +FVG +
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKK------IFVGGIKE 114
Query: 237 DTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDF 275
DT E LR +++ G+ I + T + +GK + FAF+ F
Sbjct: 115 DTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTF 153
>7297205 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 448
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/83 (32%), Positives = 49/83 (58%)
Query: 225 PSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
P R LF+ +++DT+E LR+ F+ G I +I + +++GK KG+AFI+++ E A
Sbjct: 100 PFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAA 159
Query: 285 LKDKSCRKIASRPIRMEYGEDRS 307
K +KI S+ + ++ R+
Sbjct: 160 YKHADGKKIDSKRVLVDVERART 182
>CE29317 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 146 GAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNA 205
G IT DI+ + P TK R++GF ++ F + +++A + ++G+ + K A
Sbjct: 9 GEIT--DIIVMRDPTTK------RSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 206 GSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTG 265
R DKN + N ++ L+V + D TED+L ++F G + + + + T
Sbjct: 61 VP---RDDKN---RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQ 114
Query: 266 KCKGFAFIDFKDETGATNALKDKSCRKIASR-PIRMEYGEDR-SKRQVRRRPE 316
K +GF F+ F D + KS R +R +D SK Q+ R E
Sbjct: 115 KPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRE 167
>At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LF+G +S+DT E+LLR++F + GE++++ + + TG+ +GF F+ F D L+DK
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
>At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 302
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/59 (38%), Positives = 40/59 (66%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+FVG L+++T D +R++F+ GEI+ + T ++TGK KG+ F+ F++ AT A+ D
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
>7301511 [R] KOG0118 FOG: RRM domain
Length = 471
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/120 (25%), Positives = 58/120 (47%), Gaps = 6/120 (5%)
Query: 169 RNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRI 228
R++GF +I + ++ ++G+ + K A R + ++ K
Sbjct: 71 RSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKK------ 124
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LFVG L + E+ LR++F G ++ +++ T + TGK +GFAF++F D A+ K
Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKK 184
>YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 887
Score = 54.3 bits (129), Expect = 3e-07
Identities = 79/363 (21%), Positives = 153/363 (41%), Gaps = 53/363 (14%)
Query: 1 MSDSSKE-VKKVDDAVSQVLKDPTKKRKAEDE-----IEIDLNQSVPLSKKQKRLLRRGK 54
M + +E +K+ + ++L++ +K+K DE I+ ++ ++ L + + + +
Sbjct: 104 MKEKRREALKRFREKEEKLLQEENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSSQ 163
Query: 55 VTIEELNAKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKK 114
VT E K ID KSIE+ K K++ ED+S + + + NK++
Sbjct: 164 VTSWE---KVGID-KSIEDEKL----KREEEDSSVQGNSLLAHALA----LKEENNKDE- 210
Query: 115 FGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLT------------K 162
N+ + +D + E+ E EK I N+ T +
Sbjct: 211 ----APNLVIENESDDEYSALNRNRDEDQEDAGEEEKMISISNLKDTDIGLVNDDANSDE 266
Query: 163 NDNKKLRN----KGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGR------- 211
+N+K RN + + +D+ ++++ +E+ + + S + +
Sbjct: 267 KENEKRRNLAQDEKVSDLDWFKQRRVRIKESEAETREKSSSYATEQNESLDTKKEEQPER 326
Query: 212 --PDKNDL-VAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCK 268
P K D +A K + LF+ N+ + + E+ RK F GE+ + +A TG+ K
Sbjct: 327 AVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSK 386
Query: 269 GFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDARE-PRKPSF 327
GFA++ FKD A NA + + R + + GE++ R E D + P K
Sbjct: 387 GFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKS---HRLDEFDLKNMPLKKQK 443
Query: 328 DIK 330
++K
Sbjct: 444 ELK 446
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/149 (24%), Positives = 71/149 (46%), Gaps = 8/149 (5%)
Query: 161 TKNDNK---KLRNKGFAYIDFKTEKQMEAVV-GLSESALNGRNLLIKNAGSYEGRPDKND 216
TK D K K + GF +++F+T++Q AV+ + + ++G + +K + + ++
Sbjct: 696 TKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLS---HRQASQSG 752
Query: 217 LVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFK 276
N S + V NL F+ T + + F G++ +R+ D +GFAF++F
Sbjct: 753 NTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDK-SARGFAFVEFL 811
Query: 277 DETGATNALKDKSCRKIASRPIRMEYGED 305
A NA+ + R + M+Y E+
Sbjct: 812 LPKEAENAMDQLHGVHLLGRRLVMQYAEE 840
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 54.3 bits (129), Expect = 3e-07
Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Query: 169 RNKGFAYIDFKTEKQME-AVVGLSESALNGRNLLI------KNAGSYEGRPDKNDLVAAS 221
++KGF ++ F ++ E AV L +S + G +L + K + + K++ A
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAE 309
Query: 222 KNPPSR--ILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDET 279
+ + L+V NL +D L+K F+ G I ++ T ++ G+ KGF F+ F+
Sbjct: 310 RMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMT-DENGRSKGFGFVCFEKPE 368
Query: 280 GATNALKDKSCRKIASRPIRMEYGEDRSKRQVR 312
AT+A+ + + + + S+P+ + + + R+ +
Sbjct: 369 EATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQ 401
>At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 291
Score = 54.3 bits (129), Expect = 3e-07
Identities = 24/59 (40%), Positives = 38/59 (63%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+FVG L+++T D +R++F GEI+ + T + TGK KG+ F+ F+D AT A+ D
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
>7299785 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 378
Score = 54.3 bits (129), Expect = 3e-07
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 162 KNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAAS 221
K D + R++GFA+I F + ++ V E +N + + K A + G+
Sbjct: 166 KTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGK---------- 215
Query: 222 KNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
+FVG L+ + +++ ++ +F G I+ + M + + KGF FI F E
Sbjct: 216 -------IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV 268
Query: 282 TNALKDKSCRKIASRPIRMEYGEDRSKRQV 311
T+ LK +KIA + + ++ + + Q+
Sbjct: 269 TDLLKTPK-QKIAGKEVDVKRATPKPENQM 297
>Hs14734196 [R] KOG0118 FOG: RRM domain
Length = 294
Score = 53.9 bits (128), Expect = 4e-07
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 143 DEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLI 202
++ G +T D V + P TK+ +GF ++ + T ++++A + ++GR +
Sbjct: 9 EQWGMLT--DCVVMRDPNTKHP------RGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 60
Query: 203 KNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFE 262
K A S E + K +FVG + DT E LR F+ G+I I + T
Sbjct: 61 KRAVSREDSERPGAHLTVKK------IFVGGIKEDTEEHHLRDDFEQYGKIEVIEIMTDR 114
Query: 263 DTGKCKGFAFIDFKD 277
+GK +GFAF++F D
Sbjct: 115 GSGKKRGFAFVNFDD 129
>At4g25500 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 350
Score = 53.9 bits (128), Expect = 4e-07
Identities = 51/179 (28%), Positives = 76/179 (41%), Gaps = 31/179 (17%)
Query: 172 GFAYIDFKTEKQME-AVVGLS--ESALNGRNLLIKNAGSYEG---RPDKNDLVAASKNPP 225
GFA++ + E+ E A+ L E GR L ++ S G R ++S P
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 95
Query: 226 SRILFVGNLSFDTTEDL-LRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
S+ LFV N D T L KHF+ G+I+ +R+ + FAFI ++ + AT A
Sbjct: 96 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRA 147
Query: 285 LKDKSCRKIASRPIRMEYG----------------EDRSKRQVRRRPELDAREPRKPSF 327
L + K+ + I +EY DRS + RR P RE P +
Sbjct: 148 LDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDY 206
>SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 217
Score = 53.5 bits (127), Expect = 5e-07
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
S +++GNL FD ED + F GE + I + ++TGK KGFAF+ ++D+ A+
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
Query: 286 KDKSCRKIASRPIRMEYGEDRSKRQVRRRP 315
+ + K+ R +R+++ Q + P
Sbjct: 90 DNMTNVKLLDRLVRVDHVASYKVPQKEKEP 119
>Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily)
Length = 266
Score = 53.5 bits (127), Expect = 5e-07
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 218 VAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKD 277
+ A+ R LFVGNL TE+LL + F G ++++++ +D GK K FAF++FK
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKH 59
Query: 278 ETGATNALKDKSCRKIASRPIRMEY 302
E A+ + K+ RPI++++
Sbjct: 60 EVSVPYAMNLLNGIKLYGRPIKIQF 84
>Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 246
Score = 52.8 bits (125), Expect = 9e-07
Identities = 29/83 (34%), Positives = 44/83 (52%)
Query: 225 PSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
P LFV L+ T ED L++ F G+I R+R+ TG KG+AFI++K+E A
Sbjct: 49 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKA 108
Query: 285 LKDKSCRKIASRPIRMEYGEDRS 307
+D I I ++Y +R+
Sbjct: 109 YRDADGLVIDQHEIFVDYELERT 131
>YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 250
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/108 (28%), Positives = 52/108 (47%), Gaps = 9/108 (8%)
Query: 179 KTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDT 238
K E +++ +VG L I+ + K + A SR +FVGN++ D
Sbjct: 25 KQELELDELVG---------KLSIEGTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDV 75
Query: 239 TEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
T + + HF+ CG+I RI + +TG KG+ +I+F+ AL+
Sbjct: 76 TPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ 123
>Hs5803036 [R] KOG0118 FOG: RRM domain
Length = 305
Score = 52.4 bits (124), Expect = 1e-06
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 149 TEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSY 208
T D V + P TK R++ F ++ + ++ +A + S A++G + +K A S
Sbjct: 32 TLTDCVVVVNPQTK------RSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 209 EGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCK 268
E D + + LFVG L D E L +HF G + + + + +GK +
Sbjct: 86 E------DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKR 139
Query: 269 GFAFIDFKDETGATNA 284
GF F+ F++ A A
Sbjct: 140 GFGFVYFQNHDAADKA 155
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/198 (21%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 115 FGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFA 174
F V+VG+++ D V ++++ K G ++E ++R D + ++KG+
Sbjct: 27 FHVFVGDLSKD-VSNELLKSTFTKF------GEVSEAKVIR--------DVQTQKSKGYG 71
Query: 175 YIDFKTEKQME-AVVGLSESALNGRNLLIKNAGSYEGRPDKNDL----VAASKNPPSRIL 229
++ F ++ E A+ G++ + R + A +++ L V S + +
Sbjct: 72 FVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSV 131
Query: 230 FVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKS 289
+VGN+S TT+ LR F G+I +R+ K + +AF+ ++ + AT A+ + +
Sbjct: 132 YVGNISQQTTDADLRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMN 185
Query: 290 CRKIASRPIRMEYGEDRS 307
+++A +R +G ++
Sbjct: 186 GKEMAGNQVRCSWGRTQA 203
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/84 (28%), Positives = 44/84 (51%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
+FVG+LS D + +LL+ F GE+ ++ T K KG+ F+ F ++ A NA+
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 289 SCRKIASRPIRMEYGEDRSKRQVR 312
+ + I R +R + ++ + R
Sbjct: 89 NGKWIGKRAVRTNWAARKNSEENR 112
>YIL061c [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 300
Score = 52.0 bits (123), Expect = 2e-06
Identities = 27/63 (42%), Positives = 38/63 (59%)
Query: 225 PSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
P R +F+G L +D E L+K+F GEI +IR+ + T K KG+AFI FKD + A
Sbjct: 105 PYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMA 164
Query: 285 LKD 287
K+
Sbjct: 165 FKE 167
>HsM13236563 [R] KOG0226 RNA-binding proteins
Length = 451
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
+F G+L + +D+L + F ++ ++ + TGK KG+ F+ FKD + A+++
Sbjct: 354 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 413
Query: 289 SCRKIASRPIRMEYG--EDRSKRQVRRR 314
+ + + SRPI++ +DR+ VR++
Sbjct: 414 NGKYVGSRPIKLRKSMWKDRNLDVVRKK 441
>Hs21359951 [R] KOG0226 RNA-binding proteins
Length = 480
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
+F G+L + +D+L + F ++ ++ + TGK KG+ F+ FKD + A+++
Sbjct: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
Query: 289 SCRKIASRPIRMEYG--EDRSKRQVRRR 314
+ + + SRPI++ +DR+ VR++
Sbjct: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKK 470
>At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 279
Score = 52.0 bits (123), Expect = 2e-06
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+FVG L+++T + LR+HF+ GEI+ + ++TG+ KG+ F+ F+D A A D
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
>At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 277
Score = 52.0 bits (123), Expect = 2e-06
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+FVG L+++T + LR+HF G+I+ + T ++TG+ KG+ F+ F+D A A D
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 51.6 bits (122), Expect = 2e-06
Identities = 22/74 (29%), Positives = 43/74 (57%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
++VGN+ + TE+ + +F G + +R+ +TG+ +GFAF++F +E GA A++
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 289 SCRKIASRPIRMEY 302
+ R +R+ Y
Sbjct: 68 NGVAFNGRNLRVNY 81
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 51.6 bits (122), Expect = 2e-06
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 169 RNKGFAYIDFKTE-KQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDL-------VAA 220
R KG+ ++ F E +Q+ A+ ++ + R + I A S +G + D V
Sbjct: 195 RTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTT 254
Query: 221 SKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETG 280
+P + +FVG L T+D L+ F GEI+ +++ + G F+ F +++
Sbjct: 255 DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSC 308
Query: 281 ATNALKDKSCRKIASRPIRMEYGEDRSKRQ 310
A AL+ + ++ +R+ +G S +Q
Sbjct: 309 AEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 51.2 bits (121), Expect = 3e-06
Identities = 39/171 (22%), Positives = 79/171 (45%), Gaps = 10/171 (5%)
Query: 157 NMPLTKNDNKKLRNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDK- 214
++ L K+ N K R GF ++++ E +AV L++ G+ L + A R ++
Sbjct: 289 SLSLVKDQNDKPR--GFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346
Query: 215 ----NDLVAASKNPPSRI-LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKG 269
+ N + LF+ NL + ++ L+ F G I ++ T ++ GK KG
Sbjct: 347 RKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT-DEQGKSKG 405
Query: 270 FAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAR 320
F F+ + A A+ + + R +A +P+ + + + R+ + ++ AR
Sbjct: 406 FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
>Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 963
Score = 51.2 bits (121), Expect = 3e-06
Identities = 34/146 (23%), Positives = 69/146 (46%), Gaps = 3/146 (2%)
Query: 171 KGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILF 230
+G+ Y++FK EK + + ++ GR + + PD + S + LF
Sbjct: 746 RGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFK-VFRYSTSLEKHKLF 804
Query: 231 VGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSC 290
+ L F T++ L + + G + +R+ T GK KG A++++++E+ A+ A+
Sbjct: 805 ISGLPFSCTKEELEEICKAHGTVKDLRLVT-NRAGKPKGLAYVEYENESQASQAVMKMDG 863
Query: 291 RKIASRPIRMEYGEDRSKRQVRRRPE 316
I I++ + +R+V +PE
Sbjct: 864 MTIKENIIKVAI-SNPPQRKVPEKPE 888
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 51.2 bits (121), Expect = 3e-06
Identities = 31/149 (20%), Positives = 81/149 (53%), Gaps = 10/149 (6%)
Query: 170 NKGFAYIDFKTEKQME-AVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRI 228
+KG+A++ F+T++ + A+ ++ LN R + + G ++ R ++ + A + +
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV---GRFKSRKEREAELGAKAKEFTNV 193
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
++ N + ++ L++ F G+ + +++ + GK KGF F+ ++ A A+++
Sbjct: 194 -YIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 289 SCRKIASRPIRMEYGEDRSKRQVRRRPEL 317
+ ++I+ + I + R++++V R+ EL
Sbjct: 252 NGKEISGKIIFV----GRAQKKVERQAEL 276
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 51.2 bits (121), Expect = 3e-06
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 169 RNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNA-------GSYEGRPDKNDLVAA 220
++KGF ++ ++T E +AV+ L +++G+ L + A R ++ L
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296
Query: 221 SKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETG 280
S+ PP +++ NL ++ L++ F G I R ++ + G+ KGF + F
Sbjct: 297 SR-PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEE 353
Query: 281 ATNALKDKSCRKIASRPIRMEYGEDRSK 308
AT A+ + + R + S+P+ + G+ R +
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQARRR 381
>At3g56860 [R] KOG0118 FOG: RRM domain
Length = 478
Score = 51.2 bits (121), Expect = 3e-06
Identities = 30/77 (38%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Query: 220 ASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDET 279
A ++P R +FV L +DT + L + F+ GEI + + +GK KG+ FI +K +
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 280 GATNALKDKSCRKIASR 296
GA NALK +KI SR
Sbjct: 193 GARNALKQPQ-KKIGSR 208
>At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 304
Score = 51.2 bits (121), Expect = 3e-06
Identities = 21/59 (35%), Positives = 39/59 (65%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+FVG L+++T D +R++F+ GEI+ + T ++TG+ KG+ F+ FK+ A A ++
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
>7297948 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 195
Score = 51.2 bits (121), Expect = 3e-06
Identities = 33/92 (35%), Positives = 50/92 (53%), Gaps = 8/92 (8%)
Query: 224 PPSRI-----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDE 278
PP RI L V NL++ TT + LR+ F+ CGE+ I + T + +GFAF+ F D+
Sbjct: 15 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDK 74
Query: 279 TGATNALKDKSCRKIASRPIRME---YGEDRS 307
A +AL+ R + R +R++ YG S
Sbjct: 75 RDAEDALEAMDGRMLDGRELRVQMARYGRPSS 106
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 50.8 bits (120), Expect = 3e-06
Identities = 40/162 (24%), Positives = 81/162 (49%), Gaps = 16/162 (9%)
Query: 153 IVRINMPLTKNDNKKLRNKGFAYIDFKTEKQME-AVVGLSESALNGRNLLIKNAGSYEGR 211
+V +MP D +++G+ +++F +E+ + A+ ++ L G+ + + A ++
Sbjct: 39 VVNTHMP---KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAH--- 92
Query: 212 PDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRI-RMATFEDTGKCKGF 270
+KN V A+ +F+GNL + E LL F G I++ ++ DTG KG+
Sbjct: 93 -NKNLDVGAN-------IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY 144
Query: 271 AFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQVR 312
AFI+F + A++ + + + +RPI + Y + + R
Sbjct: 145 AFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 50.8 bits (120), Expect = 3e-06
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 169 RNKGFAYIDFKT-EKQMEAVVGLSESALNGRNLLIKNAGSYEGRPD--KNDLVAASKNPP 225
++KGF ++ F+ E +AV ++ LNG+ + + A R K ++
Sbjct: 226 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 285
Query: 226 SRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
+R L+V NL ++ LRK F G I ++ + G+ KGF F+ F A
Sbjct: 286 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 343
Query: 282 TNALKDKSCRKIASRPIRMEYGEDRSKRQ 310
T A+ + + R +A++P+ + + + +RQ
Sbjct: 344 TKAVTEMNGRIVATKPLYVALAQRKEERQ 372
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 50.8 bits (120), Expect = 3e-06
Identities = 59/293 (20%), Positives = 126/293 (42%), Gaps = 37/293 (12%)
Query: 21 DPTKKRKAEDEIEIDLNQSV-------PLSKKQKRLLRRGKVTIEELNAKYNIDSKSIEE 73
D K + D I+++ QS PL+ +Q+ L++ K KY ++
Sbjct: 31 DKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAK--------KYAMEQSIKSV 82
Query: 74 YKKETAEKQDNEDTSNKKXXXXXXXXXXXXKITSKPNKEKKF-----GVWVGNMAFDTVK 128
K+T Q + T+ + + S + ++ V+VG++ ++ +
Sbjct: 83 LVKQTIAHQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYE-LG 141
Query: 129 EDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKTEKQME-AV 187
ED IR A G I D+ D+ +++KGFA+++++ + + A+
Sbjct: 142 EDTIRQAFAPF------GPIKSIDM--------SWDSVTMKHKGFAFVEYEVPEAAQLAL 187
Query: 188 VGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHF 247
++ L GRN+ + + D +A +RI +V ++ D ++D ++ F
Sbjct: 188 EQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRI-YVASVHQDLSDDDIKSVF 246
Query: 248 QHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRM 300
+ G+I +A TGK KG+ FI+++ + +A+ + + + +R+
Sbjct: 247 EAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 299
>CE01885 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 197
Score = 50.8 bits (120), Expect = 3e-06
Identities = 32/105 (30%), Positives = 55/105 (51%), Gaps = 6/105 (5%)
Query: 181 EKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLSFDTTE 240
E ++EA + E +N + KN S P + K ++ +F+GN+ F++T
Sbjct: 21 EMEIEAESAILEQI---QNKMAKNLESAAYVPPTEE---EQKAIDAKSVFIGNVDFNSTI 74
Query: 241 DLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
+ + +HF+ CG I+R + + T K K FA+I+F D + NAL
Sbjct: 75 EEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 119
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 50.8 bits (120), Expect = 3e-06
Identities = 78/340 (22%), Positives = 133/340 (38%), Gaps = 70/340 (20%)
Query: 20 KDPTKKRKAEDEIEIDLNQSVPL----SKKQKRLLRRGKVTIEELNAKYNIDSKSIEEY- 74
+ P +A D + DL ++ P+ S++ L R G + N ID+K+I +
Sbjct: 51 QQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 75 ---------KKETAEKQDN----------EDTSNKKXXXXXXXXXXXXKI-----TSKPN 110
K T EK ++ E+ +N K+ +
Sbjct: 111 SAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKE 170
Query: 111 KEKKFG--------VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTK 162
+EK+ G V+V N D E + F + G IT + ++K
Sbjct: 171 REKELGEKAKLFTNVYVKNFTEDFDDEKLKEFF-------EPYGKITSYKV------MSK 217
Query: 163 NDNKKLRNKGFAYIDFKTEKQMEAVVGLSESALNGRN------LLIKNAGSYEGRPD--K 214
D K +KGF ++ F+T + EA V ALNG++ L + A R K
Sbjct: 218 EDGK---SKGFGFVAFETTEAAEAAV----QALNGKDMGEGKSLYVARAQKKAERQQELK 270
Query: 215 NDLVAASKNPPSRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGF 270
+ + L+V NL +D LR F G I ++ T E+ G+ KGF
Sbjct: 271 RKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGF 329
Query: 271 AFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQ 310
F+ F + AT A+ + + R + S+P+ + + + +R+
Sbjct: 330 GFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERK 369
>7296727 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 50.8 bits (120), Expect = 3e-06
Identities = 23/72 (31%), Positives = 39/72 (53%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
+F G+L D +++L + F R R+ + TGK KGF F+ F++ A+K+
Sbjct: 200 IFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEM 259
Query: 289 SCRKIASRPIRM 300
R + SRPI++
Sbjct: 260 DGRYVGSRPIKL 271
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 50.8 bits (120), Expect = 3e-06
Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 153 IVRINMPLTKNDNKKLRNKGFAYIDFKTEKQMEAVVGLSESA-LNGRNLLIKNAGSYEGR 211
+V ++MP D ++G+ +++F +E+ + + + L G+ + + A +++
Sbjct: 39 VVNVHMP---KDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQ-- 93
Query: 212 PDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRI-RMATFEDTGKCKGF 270
KN V A+ +F+GNL + E LL F G I++ ++ +TGK K F
Sbjct: 94 --KNLDVGAN-------IFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSF 144
Query: 271 AFIDFKDETGATNALKDKSCRKIASRPIRMEY 302
AFI+F + A+ + + + +RPI + Y
Sbjct: 145 AFINFASFEASDAAMDAMNGQYLCNRPISVSY 176
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 50.4 bits (119), Expect = 4e-06
Identities = 47/191 (24%), Positives = 79/191 (40%), Gaps = 37/191 (19%)
Query: 148 ITEKDIVRINMPLTKNDNKKLRNK-----GFAYIDFKTEKQMEAVVGLSESALNGRNLLI 202
+TEK+++ PL + +RN G+ ++DF E++++ + + + GR + +
Sbjct: 305 VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 364
Query: 203 ---KNAGSYEGRP----------------DKNDLVAASKNPPSRILFVGNLSFDTTEDLL 243
KN + +G P ++ DL + + LFV NL + +TE+ L
Sbjct: 365 FREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGR------LFVRNLPYTSTEEDL 418
Query: 244 RKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASR------- 296
K F G + + T K KGFAFI F A A + + R
Sbjct: 419 EKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPS 478
Query: 297 PIRMEYGEDRS 307
I+ E ED S
Sbjct: 479 TIKKEASEDAS 489
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 50.4 bits (119), Expect = 4e-06
Identities = 47/191 (24%), Positives = 79/191 (40%), Gaps = 37/191 (19%)
Query: 148 ITEKDIVRINMPLTKNDNKKLRNK-----GFAYIDFKTEKQMEAVVGLSESALNGRNLLI 202
+TEK+++ PL + +RN G+ ++DF E++++ + + + GR + +
Sbjct: 305 VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 364
Query: 203 ---KNAGSYEGRP----------------DKNDLVAASKNPPSRILFVGNLSFDTTEDLL 243
KN + +G P ++ DL + + LFV NL + +TE+ L
Sbjct: 365 FREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGR------LFVRNLPYTSTEEDL 418
Query: 244 RKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIASR------- 296
K F G + + T K KGFAFI F A A + + R
Sbjct: 419 EKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPS 478
Query: 297 PIRMEYGEDRS 307
I+ E ED S
Sbjct: 479 TIKKEASEDAS 489
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/151 (23%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 170 NKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGR-PDKNDLVAASKNPPSRI 228
+KG+A++ F+ + + + +NG+ L+K + GR ++ D A ++ S
Sbjct: 253 SKGYAFVHFQNQSAADRAI----EEMNGK--LLKGCKVFVGRFKNRKDREAELRSKASEF 306
Query: 229 --LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALK 286
+++ N D ++ L+ F G+ + +++ T + +GK KGF F+ F A A++
Sbjct: 307 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVSFDSHEAAKKAVE 365
Query: 287 DKSCRKIASRPIRMEYGEDRSKRQVRRRPEL 317
+ + R I + I + R++++V R+ EL
Sbjct: 366 EMNGRDINGQLIFV----GRAQKKVERQAEL 392
>At5g46840 [R] KOG0118 FOG: RRM domain
Length = 501
Score = 50.4 bits (119), Expect = 4e-06
Identities = 77/338 (22%), Positives = 129/338 (37%), Gaps = 59/338 (17%)
Query: 21 DPTKKRKAEDEIEIDLNQSVPLSKKQKRLLRRG--KVTIEELNAKYNIDSK--------- 69
D E+E E DL SKK+K+L G K TI E + + SK
Sbjct: 65 DKRNAENEEEEEETDLPVKTKKSKKEKKLTDSGDEKETISEAVEESGLVSKRKKRKRDEI 124
Query: 70 ----------SIEEYKKETAEKQDNEDTS-----NKKXXXXXXXXXXXXKITSKPNKEKK 114
S+E +K+ EK+ D +K+ + + P K KK
Sbjct: 125 ENEYETKKYGSVEMKEKKVGEKRKKADEVADTMVSKEGFDDESKLLRTVFVGNLPLKVKK 184
Query: 115 FGVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFA 174
+ F V+ IR + + GAI K I N+K + A
Sbjct: 185 KVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQI-----------NEKASSV-HA 232
Query: 175 YIDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNL 234
Y+ F+TE+ A + + S ++G ++ + A + +D P R +F+GNL
Sbjct: 233 YVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHD--DTHLYDPKRTVFMGNL 290
Query: 235 SFDTTEDLL------RKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
FD ++ + + + ++ E +R+ + G KG A++ FK A LK K
Sbjct: 291 PFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIG--KGIAYVLFKTREAANLVLK-K 347
Query: 289 SCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPS 326
K+ R +R+ R +P+ ++ PS
Sbjct: 348 GYLKLRERELRIS----------RVKPDTPSKRKSNPS 375
>At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 674
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 164 DNKKLRNKGFA-YIDFKTEKQMEAVVGLSESALNGRNL---LIKNAGSYEGRPDKNDLVA 219
+ +K+ + G Y+D EA LS + G + +K A S + N V
Sbjct: 442 EQRKIPDVGLQRYMDEGRLVSSEATTQLSTQKILGDTIGNGNVKPAASVKEESTTNKSVP 501
Query: 220 AS-------KNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAF 272
+ ++ SR +FV N+ F T+D L +HF GE+++ + T TG+ G A+
Sbjct: 502 GTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAY 561
Query: 273 IDFKDETGATNAL 285
I+F + A NAL
Sbjct: 562 IEFTRKEAAENAL 574
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 50.4 bits (119), Expect = 4e-06
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
+FVG +S+ T E LR+ F GE++ ++ +TG+ +GFAF+ F A+NA++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 289 SCRKIASRPIRMEYGEDR 306
+ + R IR+ Y +R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 50.4 bits (119), Expect = 4e-06
Identities = 35/161 (21%), Positives = 71/161 (43%), Gaps = 8/161 (4%)
Query: 169 RNKGFAYIDFK-TEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDK------NDLVAAS 221
++KGF +++F+ ++ AV L+ + + + A R + L A+
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAA 321
Query: 222 KNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
L+V NL T+D LR+HF G I ++ + +G +G F+ F A
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR-DPSGVSRGSGFVAFSTPEEA 380
Query: 282 TNALKDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREP 322
T A+ + + + I ++P+ + + + R+ R + + P
Sbjct: 381 TRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRP 421
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LFV NL+F T +D L F G I + T +TG+ +G+ F+ F A A K+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 289 SCRKIASRPIRMEYGEDRSKRQV 311
+K+ R +R+++ R + +V
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEV 89
Score = 49.7 bits (117), Expect = 7e-06
Identities = 49/214 (22%), Positives = 88/214 (40%), Gaps = 22/214 (10%)
Query: 117 VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYI 176
++V N+AF T ++D+ F D+ I + + + N+G+ ++
Sbjct: 7 LFVRNLAFQTKQDDLTNFF---------------SDVGPIKHAVVVTNPETGENRGYGFV 51
Query: 177 DFKT-EKQMEAVVGLSESALNGRNLLIKNAGSY---EGRPDKNDLVAASKNPPSRI-LFV 231
F E A L L+GR L + A E D+N V + +R L +
Sbjct: 52 TFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLII 111
Query: 232 GNLSFDTTEDL-LRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSC 290
NL + + L HF G++ I++ T + G+ GFAF+ KD A A+ +
Sbjct: 112 RNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNG 170
Query: 291 RKIASRPIRMEYGEDRSKRQVRRRPELDAREPRK 324
+I RPI +++ + + + + E K
Sbjct: 171 TEIDGRPIAVDWAVSKDAFEATTLKDASSEEENK 204
>CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 302
Score = 50.1 bits (118), Expect = 6e-06
Identities = 25/77 (32%), Positives = 45/77 (57%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
+++G LS+ +E + F GE+M I + +DTGK KGFAF+ +KD+ A+ +
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 289 SCRKIASRPIRMEYGED 305
+ + R IR+++ E+
Sbjct: 100 NGISLHKRMIRVDHVEE 116
>CE01888 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 237
Score = 50.1 bits (118), Expect = 6e-06
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
++ +F+GN+ F++T + + +HF+ CG+I++ + + T K K FA+I+F D + NAL
Sbjct: 100 AKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 159
>At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 473
Score = 50.1 bits (118), Expect = 6e-06
Identities = 27/86 (31%), Positives = 45/86 (51%), Gaps = 2/86 (2%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LF+G +S+DT E+ LR +F + G+++ + TG+ +GF FI F D + + DK
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 289 SCRKIASRPIRMEYGEDRSKRQVRRR 314
I R + + R +QV +R
Sbjct: 68 HI--IDGRTVEAKKAVPRDDQQVLKR 91
>At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 772
Score = 50.1 bits (118), Expect = 6e-06
Identities = 47/211 (22%), Positives = 95/211 (44%), Gaps = 31/211 (14%)
Query: 121 NMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAYIDFKT 180
N++F T E + + K+ G I I++ N+K + G+ +++F +
Sbjct: 549 NLSFKTTDEGLKKHFTKLVKQ----GKILSVTIIK------HKKNEKYLSSGYGFVEFDS 598
Query: 181 EKQMEAV------VGLSE----------SALNGRNLLIKNAGSYEGRPDKNDLVAASKNP 224
+ +V +GL + L+G L+++ + D ++K+
Sbjct: 599 VETATSVYRDLQLIGLDGVEWHFLLWQGTVLDGHALILRFCENKRSDKVGKD---SNKDK 655
Query: 225 PSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
P L V N++F+ T+ LR+ F G+I +R+ ++ G+ G+AF++F + A NA
Sbjct: 656 PCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNA 714
Query: 285 LKDKSCRKIASRPIRMEY-GEDRSKRQVRRR 314
K + R + +E+ +D S +R+R
Sbjct: 715 KKALASTHFYGRHLVLEWANDDNSMEAIRKR 745
>At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 352
Score = 50.1 bits (118), Expect = 6e-06
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 221 SKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETG 280
+K S ++VG + FD TE L F GEI+ + + + TGK KGFAF+ ++D+
Sbjct: 30 AKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Query: 281 ATNALKDKSCRKIASRPIRME----YGEDRSKRQVRRRPELDAR 320
A+ + + + R I+++ Y + + + RR +AR
Sbjct: 90 TILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREAR 133
>SPBC16E9.12c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 166
Score = 49.7 bits (117), Expect = 7e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 211 RPDKNDLVAASKNPPSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGF 270
R DK + A S ++VGN+ + T + L+ HF CG + R+ + + TG KGF
Sbjct: 46 RNDKESIDAQS-------VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGF 98
Query: 271 AFIDFKDETGATNAL 285
A+I+F + + NAL
Sbjct: 99 AYIEFSEPSLVPNAL 113
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 49.7 bits (117), Expect = 7e-06
Identities = 26/84 (30%), Positives = 44/84 (51%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LFVG LSFDT E L + F G+I + + +T + +GF F+ F++ A +A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 289 SCRKIASRPIRMEYGEDRSKRQVR 312
+ + + R IR++ S + R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 49.7 bits (117), Expect = 7e-06
Identities = 38/151 (25%), Positives = 68/151 (44%), Gaps = 10/151 (6%)
Query: 171 KGFAYIDFKTEKQM-EAVVGLSESALNGRNLLIK----NAGSYEGRPDKNDLVAASKNPP 225
KGF ++ F + +AV L++S L G + + S K A +
Sbjct: 278 KGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERV 337
Query: 226 SRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
R L+V N+ D +D LR HF G I ++ ++ G+ KGF F+ F+ A
Sbjct: 338 QRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV-DENGRSKGFGFVCFEKPEEA 396
Query: 282 TNALKDKSCRKIASRPIRMEYGEDRSKRQVR 312
T A+ D + + I ++P+ + + + R+ +
Sbjct: 397 TAAVTDMNSKMIGAKPLYVALAQRKEDRRAQ 427
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 49.7 bits (117), Expect = 7e-06
Identities = 38/151 (25%), Positives = 68/151 (44%), Gaps = 10/151 (6%)
Query: 171 KGFAYIDFKTEKQM-EAVVGLSESALNGRNLLIK----NAGSYEGRPDKNDLVAASKNPP 225
KGF ++ F + +AV L++S L G + + S K A +
Sbjct: 278 KGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERV 337
Query: 226 SRI----LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
R L+V N+ D +D LR HF G I ++ ++ G+ KGF F+ F+ A
Sbjct: 338 QRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMV-DENGRSKGFGFVCFEKPEEA 396
Query: 282 TNALKDKSCRKIASRPIRMEYGEDRSKRQVR 312
T A+ D + + I ++P+ + + + R+ +
Sbjct: 397 TAAVTDMNSKMIGAKPLYVALAQRKEDRRAQ 427
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LF+G +S+DT E+ L+++F G+++ + TG+ +GF FI F D + A + DK
Sbjct: 10 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 69
Query: 289 SCRKIASRPIRMEYGEDRSKRQVRRR 314
I R + + R +QV +R
Sbjct: 70 HI--IDGRTVEAKKAVPRDDQQVLKR 93
>At3g50670 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 427
Score = 49.7 bits (117), Expect = 7e-06
Identities = 26/90 (28%), Positives = 47/90 (51%)
Query: 225 PSRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNA 284
P + LFV L+++++E +++ F+ G I R+ + T + T K KG+AFI++ A
Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195
Query: 285 LKDKSCRKIASRPIRMEYGEDRSKRQVRRR 314
K +KI R + ++ R+ R R
Sbjct: 196 YKQADGQKIDGRRVLVDVERGRTVPNWRPR 225
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 49.7 bits (117), Expect = 7e-06
Identities = 51/227 (22%), Positives = 91/227 (39%), Gaps = 45/227 (19%)
Query: 109 PNKEKKFG----VWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKND 164
P KE+ F ++VGN+ F+ + + + G + +++ D
Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLF-------ESAGNVEMVEVIY--------D 125
Query: 165 NKKLRNKGFAYIDFKTEKQMEAVVG-LSESALNGRNLLIKNAGSYEGRPDKNDLVAASKN 223
R++GF ++ + ++EA + L+GR L + NAG P + D S+
Sbjct: 126 KITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV-NAGPPP--PKRED--GFSRG 180
Query: 224 PPSRI--------------------LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFED 263
P S ++VGNLS+ + L F G+++ R+ D
Sbjct: 181 PRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRD 240
Query: 264 TGKCKGFAFIDFKDETGATNALKDKSCRKIASRPIRMEYGEDRSKRQ 310
+G+ KGF F+ + NA+K + R IR+ E R R+
Sbjct: 241 SGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
>7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 611
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/163 (22%), Positives = 81/163 (48%), Gaps = 21/163 (12%)
Query: 117 VWVGNMAFDTVKEDIIRFI-VAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAY 175
++VG +++ T + + + + +++ D+ G+ + K + LR++GF +
Sbjct: 177 LFVGGLSWQTSSDKLKEYFNIEESRVKDKAGSRSRKQRI-----------PGLRSRGFGF 225
Query: 176 IDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLS 235
I F+ +E V+ + L+G+ + K+A KN A+K ++ +FVG +S
Sbjct: 226 ITFQEPCTVEKVLKVPIHTLDGKKIDPKHA------TPKNRPRQANK---TKKIFVGGVS 276
Query: 236 FDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDE 278
DT+ + ++ +F G + M + T + +GF F+ F++E
Sbjct: 277 QDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENE 319
>At3g20930_2 [R] KOG0118 FOG: RRM domain
Length = 92
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDK 288
LF+ LSF T+E LR F+ GE++ +++ + + + KG+AF+++ E A ALK+
Sbjct: 2 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 61
Query: 289 SCRKIASRPIRMEYGEDRSKRQVRRRP 315
+ + I I ++ + + RQ R +P
Sbjct: 62 NGKIINGWMIVVDVAKTKPFRQNRSQP 88
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 49.3 bits (116), Expect = 1e-05
Identities = 44/246 (17%), Positives = 101/246 (40%), Gaps = 35/246 (14%)
Query: 62 AKYNIDSKSIEEYKKETAEKQDNEDTSNKKXXXXXXXXXXXXKIT------SKPNKEKKF 115
+ Y+I +++ + AE +N N + + P +
Sbjct: 104 SSYDIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDG 163
Query: 116 GVWVGNMAFDTVKEDIIRFIVAKTKENDEGGAITEKDIVRINMPLTKNDNKKLRNKGFAY 175
+++G + ++T + + + ++ G + + ++R D+ R++GF +
Sbjct: 164 KMFIGGLNWETTDDSLRDYF-------EQFGEVLDCTVMR--------DSTTGRSRGFGF 208
Query: 176 IDFKTEKQMEAVVGLSESALNGRNLLIKNAGSYEGRPDKNDLVAASKNPPSRILFVGNLS 235
+ FK K + V+ E L+G+ + K A + + + +FVG +
Sbjct: 209 LTFKNPKCVNEVMS-KEHHLDGKIIDPKRA------------IPREEQEKTAKMFVGGVP 255
Query: 236 FDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKDKSCRKIAS 295
D TE+ R F G ++ + +DTG+ +GF F+ +++E+ A A + I
Sbjct: 256 GDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENES-AVEATMSQPYITIHG 314
Query: 296 RPIRME 301
+P+ ++
Sbjct: 315 KPVEVK 320
>CE08254 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 205
Score = 49.3 bits (116), Expect = 1e-05
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
++ ++VGN+ + T + + +HF CG + R+ + +G KGFA+++F ++ G NAL
Sbjct: 77 AKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL 136
>At5g44200 [A] KOG0121 Nuclear cap-binding protein complex subunit CBP20 (RRM
superfamily)
Length = 257
Score = 49.3 bits (116), Expect = 1e-05
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
S +++GN+SF TTE+ L + F GEI +I M ++T GF F+ F +A+
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 286 KDKSCRKIASRPIRMEY----------GEDRSKRQVR 312
K S + RPIR+++ G RS QVR
Sbjct: 93 KYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVR 129
>At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 317
Score = 49.3 bits (116), Expect = 1e-05
Identities = 20/59 (33%), Positives = 39/59 (65%)
Query: 229 LFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNALKD 287
+FVG L+++T ++ ++KHF+ GEI+ + T + +G+ KG+ F+ F++ A +A D
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 49.3 bits (116), Expect = 1e-05
Identities = 45/161 (27%), Positives = 72/161 (43%), Gaps = 26/161 (16%)
Query: 170 NKGFAYIDFKTEKQMEAVVGLSESALNGRNLLIK----NAGSYEGRPDKNDLVAASKNPP 225
N +A+I++ + + +A+N R L K N + G K D+ +
Sbjct: 44 NDPYAFIEYSNYQAATTAL----TAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHH--- 96
Query: 226 SRILFVGNLSFDTTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGATNAL 285
+FVG+LS + + LR+ F GEI R+ T K KG+AF+ F + A NA+
Sbjct: 97 ---IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAI 153
Query: 286 KDKSCRKIASRPIRMEYGEDRSKRQVRRRPELDAREPRKPS 326
+ + + I SR IR + R+ P PR+PS
Sbjct: 154 QAMNGQWIGSRSIRTNW-------STRKLP-----PPREPS 182
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.129 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,369,712
Number of Sequences: 60738
Number of extensions: 890786
Number of successful extensions: 4115
Number of sequences better than 1.0e-05: 143
Number of HSP's better than 0.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 3796
Number of HSP's gapped (non-prelim): 286
length of query: 391
length of database: 30,389,216
effective HSP length: 108
effective length of query: 283
effective length of database: 23,829,512
effective search space: 6743751896
effective search space used: 6743751896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)