ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2064 suspect: LH J KOG1711 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L22
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2064 703455 704351 299
(299 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL177c [J] KOG1711 Mitochondrial/chloroplast ribosomal protein L22 255 6e-68
SPCC1739.02c [J] KOG1711 Mitochondrial/chloroplast ribosomal pro... 64 2e-10
>YNL177c [J] KOG1711 Mitochondrial/chloroplast ribosomal protein L22
Length = 309
Score = 255 bits (651), Expect = 6e-68
Identities = 130/257 (50%), Positives = 165/257 (63%), Gaps = 11/257 (4%)
Query: 49 DDDPNKLSNKLTTATELSDDLDAATQLAEAKKKVTAANDTQLQKYIEEQDPMIKSLPEFL 108
D+D SN+L A++ S + + +T ND LQ++I + + L
Sbjct: 58 DEDAGSFSNRLAIASDSSGEAPEVN-----RDSITIENDKLLQQHIISLQQPEQLASQSL 112
Query: 109 LPRVKKEFYEQQVRLNGGFYDKSVRPK------DRSLRLTNEELEVLEPXXXXXXXXXXX 162
L +K+E YE ++NGGFY K K L+ T E+EVLEP
Sbjct: 113 LSPLKREIYEANCKINGGFYKKDTIVKLPNSSERYKLKFTKREIEVLEPSVYAQSYRIKS 172
Query: 163 XXXXATQLLRLLNGLDAKKALTQCHFSDKKVARDVAELLERGINDGVKLGLDANDLYISQ 222
AT LLRLL GLD KA++QCHFS+KK+AR+VAELL++G+ DG KLGL DLYISQ
Sbjct: 173 SMKKATLLLRLLGGLDVMKAISQCHFSNKKIAREVAELLQKGVKDGQKLGLKPEDLYISQ 232
Query: 223 IWTGSDGFWQKRVEWKGRGRRGLIEHPYVHIKCILKTKSVTKRRLEHEAKLKEQRKKPWV 282
IWTGSDGFW+KRVE+K R R G+I HPY+H++CIL+TKSVTKRRL +EA LKEQ++ PWV
Sbjct: 233 IWTGSDGFWRKRVEFKARTRIGIISHPYIHVRCILRTKSVTKRRLAYEAHLKEQKRAPWV 292
Query: 283 QLADKPIRGSMGGVYKW 299
QL DKPIRG GGVYKW
Sbjct: 293 QLGDKPIRGVTGGVYKW 309
>SPCC1739.02c [J] KOG1711 Mitochondrial/chloroplast ribosomal protein L22
Length = 249
Score = 64.3 bits (155), Expect = 2e-10
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 129 DKSVRPKDRSLRLTNEELEVLEPXXXXXXXXXXXXXXXATQLLRLLNGLDAKKALTQCHF 188
++ V+ + RS R++ ++ E ++P L R + AL Q
Sbjct: 82 EERVKERPRS-RISFKKQETMDPSYTLQSMVLRSSLKKVGALCRQIAHKPFYHALLQMKM 140
Query: 189 SDKKVARDVAELLERGINDGVK-LGLDANDLYISQIWTGSDGFWQKRVEWKGRGRRGLIE 247
SDKK+++ +A L + V+ GLD + LY+ QIW G + +K + GRG R +
Sbjct: 141 SDKKISKYIATALVSARENAVREAGLDESTLYVDQIWVGKAKYLKKLIT-MGRGGRAIER 199
Query: 248 HPYVHIKCILKTKSVTKRRLEHEAKLKEQRKKPWVQLADKPI 289
P V + +L+ + R L+ + + +RKK W L ++PI
Sbjct: 200 SPRVRVTVVLRDERALLRDLQRRQQ-RLERKKVWTPLPNRPI 240
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,461,613
Number of Sequences: 60738
Number of extensions: 602824
Number of successful extensions: 1821
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 2
length of query: 299
length of database: 30,389,216
effective HSP length: 106
effective length of query: 193
effective length of database: 23,950,988
effective search space: 4622540684
effective search space used: 4622540684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)