ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2069 good J KOG3181 Translation, ribosomal structure and biogenesis 40S ribosomal protein S3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2069 706338 705628 -237
(237 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL178w [J] KOG3181 40S ribosomal protein S3 413 e-116
SPBC16G5.14c [J] KOG3181 40S ribosomal protein S3 327 1e-89
7300992 [J] KOG3181 40S ribosomal protein S3 303 2e-82
At3g53870 [J] KOG3181 40S ribosomal protein S3 301 4e-82
Hs15718687 [J] KOG3181 40S ribosomal protein S3 296 2e-80
At5g35530 [J] KOG3181 40S ribosomal protein S3 294 8e-80
At2g31610 [J] KOG3181 40S ribosomal protein S3 293 2e-79
CE01810 [J] KOG3181 40S ribosomal protein S3 267 8e-72
Hs14781627 [J] KOG3181 40S ribosomal protein S3 170 1e-42
ECU09g1250 [J] KOG3181 40S ribosomal protein S3 154 1e-37
Hs22059034 [J] KOG3181 40S ribosomal protein S3 60 3e-09
Hs18580587 [J] KOG3181 40S ribosomal protein S3 60 3e-09
>YNL178w [J] KOG3181 40S ribosomal protein S3
Length = 240
Score = 413 bits (1062), Expect = e-116
Identities = 207/233 (88%), Positives = 223/233 (94%)
Query: 1 MVAIISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVG 60
MVA+ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTE+IIRAT+ QDV+G
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 ENGRRINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
ENGRRINELTLL++KRFKY GTI LYAERV DRGLSAVAQAESMKFKLLNGLAIRRAAY
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVVRYVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQG 180
GVVRYVMESGAKGCEVV+SGKLRAARAK+MKFADGFLIHSGQPVNDFI+TATRHVL+RQG
Sbjct: 121 GVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQG 180
Query: 181 VLGIKVKIMKDPSRNTSGPKALPDAVTIIEPKEEEPVLEPSVKDYRPTEPVEA 233
VLGIKVKIM+DP+++ +GPKALPDAVTIIEPKEEEP+L PSVKDYRP E EA
Sbjct: 181 VLGIKVKIMRDPAKSRTGPKALPDAVTIIEPKEEEPILAPSVKDYRPAEETEA 233
>SPBC16G5.14c [J] KOG3181 40S ribosomal protein S3
Length = 249
Score = 327 bits (837), Expect = 1e-89
Identities = 165/230 (71%), Positives = 193/230 (83%), Gaps = 1/230 (0%)
Query: 5 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVGENGR 64
ISKKRK VADGVFYAELNEFFTREL+EEGYSG EVRVTP+++EIIIRAT QDV+GE GR
Sbjct: 7 ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66
Query: 65 RINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVR 124
RI ELT L++KRFK+ T+ LYAE+V +RGL AVAQ ES+++KLL GLA+RRAAYGV+R
Sbjct: 67 RIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLR 126
Query: 125 YVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQGVLGI 184
YVME+GAKGCEVVISGKLRAARAKSMKFADGF+IHSGQP DFI++ATRHVLLRQGVLG+
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGV 186
Query: 185 KVKIMKDPSRNTSGPKALPDAVTIIEPKEEEPVLEPSVKDYRPTEPVEAA 234
KVKIM P T K+LPD V +++PKEEEP+ +P +P E AA
Sbjct: 187 KVKIML-PEPKTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVEAAAAA 235
>7300992 [J] KOG3181 40S ribosomal protein S3
Length = 246
Score = 303 bits (775), Expect = 2e-82
Identities = 153/238 (64%), Positives = 188/238 (78%), Gaps = 6/238 (2%)
Query: 5 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVGENGR 64
ISKKRK V+DG+F AELNEF TRELAE+GYSGVEVRVTP++TEIII ATK Q V+GE GR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVR 124
RI ELT +++KRF ++ G I LYAE+V RGL A+AQAES+++KL GLA+RRA YGV+R
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 YVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQGVLGI 184
Y+MESGAKGCEVV+SGKLR RAKSMKF DG +IHSG P ND++ETATRHVLLRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186
Query: 185 KVKIM--KDPSRNTSGPKALPDAVTIIEPKEEEPVLEPSVKDYR---PTEPVEAAESA 237
KVK+M DP K LPD V+++EPKEE+ + E +Y+ P++P++ A
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEK-IYETPETEYKIPPPSKPLDDLSEA 243
>At3g53870 [J] KOG3181 40S ribosomal protein S3
Length = 249
Score = 301 bits (772), Expect = 4e-82
Identities = 152/223 (68%), Positives = 185/223 (82%), Gaps = 2/223 (0%)
Query: 1 MVAIISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVG 60
M ISKKRK VADGVFYAELNE TRELAE+GYSGVEVRVTP +TEIIIRAT+ Q+V+G
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 ENGRRINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
E GRRI ELT L++KRFK+ ++ LYAE+V++RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVVRYVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQG 180
GV+R+VMESGAKGCEV++SGKLRAARAKSMKF DG+++ SGQP ++I++A RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180
Query: 181 VLGIKVKIMKD-PSRNTSGPKA-LPDAVTIIEPKEEEPVLEPS 221
VLGIKVK+M D + SGPK LPD V I PKEEE + P+
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPA 223
>Hs15718687 [J] KOG3181 40S ribosomal protein S3
Length = 243
Score = 296 bits (758), Expect = 2e-80
Identities = 148/216 (68%), Positives = 178/216 (81%), Gaps = 2/216 (0%)
Query: 1 MVAIISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVG 60
M ISKKRK VADG+F AELNEF TRELAE+GYSGVEVRVTPT+TEIII AT+ Q+V+G
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 ENGRRINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
E GRRI ELT +++KRF + G++ LYAE+V RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVVRYVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQG 180
GV+R++MESGAKGCEVV+SGKLR RAKSMKF DG +IHSG PVN +++TA RHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 181 VLGIKVKIMK--DPSRNTSGPKALPDAVTIIEPKEE 214
VLGIKVKIM DP+ K LPD V+I+EPK+E
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>At5g35530 [J] KOG3181 40S ribosomal protein S3
Length = 248
Score = 294 bits (752), Expect = 8e-80
Identities = 148/223 (66%), Positives = 182/223 (81%), Gaps = 2/223 (0%)
Query: 1 MVAIISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVG 60
M ISKKRK VADGVFYAELNE TRELAE+GYSGVEVRVTP +TEIIIRAT+ Q+V+G
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 ENGRRINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
E GRRI ELT L++KRFK+ + ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVVRYVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQG 180
GV+R+VMESGAKGCEV++SGKLRAARAKSMKF DG+++ SGQP ++I+ A RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 181 VLGIKVKIMKD-PSRNTSGPKA-LPDAVTIIEPKEEEPVLEPS 221
VLG+KVKIM D + GP LPD V I PKE++ + P+
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223
>At2g31610 [J] KOG3181 40S ribosomal protein S3
Length = 250
Score = 293 bits (749), Expect = 2e-79
Identities = 149/216 (68%), Positives = 179/216 (81%), Gaps = 2/216 (0%)
Query: 1 MVAIISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVG 60
M ISKKRK VADGVFYAELNE TRELAE+GYSGVEVRVTP +TEIIIRAT+ Q+V+G
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 ENGRRINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
E GRRI ELT L++KRFK+ ++ LYAE+V++RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVVRYVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQG 180
GV+R+VMESGAKGCEV++SGKLRAARAKSMKF DG+++ SGQP ++I+ A RHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 181 VLGIKVKIMKD-PSRNTSGPKA-LPDAVTIIEPKEE 214
VLGIKVKIM D SGPK LPD V I PK++
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDD 216
>CE01810 [J] KOG3181 40S ribosomal protein S3
Length = 247
Score = 267 bits (683), Expect = 8e-72
Identities = 134/219 (61%), Positives = 174/219 (79%), Gaps = 4/219 (1%)
Query: 5 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVGENGR 64
++KK+K V G+F AELN F +ELAE+GYSGVEVR TP + E+II AT+ Q+V+GE GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVR 124
RI ELT +++KRF ++ G++ LYAE+V +RGL AVAQ ES+++KL+ GLA+RRA YGV+R
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 YVMESGAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQGVLGI 184
++MESGA+G EV++SGKLR RAK+MKF DG +IHSG PVND+I+ A RHV LRQGV+GI
Sbjct: 127 FIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGI 186
Query: 185 KVKIM--KDPSRNTSGPK-ALPDAVTIIEPKEEEPVLEP 220
KVKIM DP R +GP+ ALPD V I+EP+EE EP
Sbjct: 187 KVKIMLPYDP-RGQNGPRNALPDHVQIVEPQEEVLPKEP 224
>Hs14781627 [J] KOG3181 40S ribosomal protein S3
Length = 122
Score = 170 bits (431), Expect = 1e-42
Identities = 81/122 (66%), Positives = 103/122 (84%)
Query: 21 LNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVGENGRRINELTLLIEKRFKYK 80
+NEF T+ELAE+GYSGVE+RVTPT+TEII+ AT+ Q+V+GE GRRI ELT +++KRF
Sbjct: 1 MNEFLTQELAEDGYSGVEMRVTPTRTEIIVLATRTQNVLGEKGRRIRELTAVVQKRFGSP 60
Query: 81 RGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVISG 140
G++ LYAE V RGL A+AQAES+ +KLL GLA+RRA YGV R++ME+GAKGCEVV+SG
Sbjct: 61 EGSVELYAEEVATRGLCAIAQAESLPYKLLGGLAVRRACYGVSRFIMETGAKGCEVVVSG 120
Query: 141 KL 142
KL
Sbjct: 121 KL 122
>ECU09g1250 [J] KOG3181 40S ribosomal protein S3
Length = 228
Score = 154 bits (388), Expect = 1e-37
Identities = 79/206 (38%), Positives = 125/206 (60%), Gaps = 2/206 (0%)
Query: 10 KLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVGENGRRINEL 69
+ + +G+ AEL EFF + L EG+S +E+R+ T +II++ K + +GE R+ +
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 70 TLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMES 129
L +R + ++ + E+VH++GL A+ QA ++ K+L G+ RRA ++ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 130 GAKGCEVVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETATRHVLLRQGVLGIKVKIM 189
A+GC++++SGKL+ RAKS+KF DG LIHSG V D+I T V +QGV+GI+V+IM
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIM 200
Query: 190 --KDPSRNTSGPKALPDAVTIIEPKE 213
DP LPD +TI+EP E
Sbjct: 201 LPYDPEGVLGPNYPLPDRITILEPSE 226
>Hs22059034 [J] KOG3181 40S ribosomal protein S3
Length = 259
Score = 59.7 bits (143), Expect = 3e-09
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 42 TPTKTEIIIRATKVQDVVGENGRRINELTLLIEKRFKYKRGTIALYAER 90
TPT+TEIII AT+ Q+V+GE G+ + ELT +EKRF + G++ LYA++
Sbjct: 131 TPTRTEIIILATRTQNVLGEKGQWVGELTAAVEKRFGFPEGSVELYADK 179
>Hs18580587 [J] KOG3181 40S ribosomal protein S3
Length = 506
Score = 59.7 bits (143), Expect = 3e-09
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 42 TPTKTEIIIRATKVQDVVGENGRRINELTLLIEKRFKYKRGTIALYAER 90
TPT+TEIII AT+ Q+V+GE G+ + ELT +EKRF + G++ LYA++
Sbjct: 378 TPTRTEIIILATRTQNVLGEKGQWVGELTAAVEKRFGFPEGSVELYADK 426
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,756,719
Number of Sequences: 60738
Number of extensions: 499931
Number of successful extensions: 1502
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 14
length of query: 237
length of database: 30,389,216
effective HSP length: 103
effective length of query: 134
effective length of database: 24,133,202
effective search space: 3233849068
effective search space used: 3233849068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)