ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2107 good J KOG3257 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2107 717270 717716 149
(149 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL185c [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11 230 6e-61
SPAC1486.07c [J] KOG3257 Mitochondrial/chloroplast ribosomal pro... 160 6e-40
At4g35490 [J] KOG3257 Mitochondrial/chloroplast ribosomal protei... 119 1e-27
Hs7705618 [J] KOG3257 Mitochondrial/chloroplast ribosomal protei... 118 3e-27
CE00004 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11 110 5e-25
7299888 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11 105 3e-23
At1g32990 [J] KOG3257 Mitochondrial/chloroplast ribosomal protei... 98 4e-21
Hs17444495 [J] KOG3257 Mitochondrial/chloroplast ribosomal prote... 69 2e-12
At5g51610 [J] KOG3257 Mitochondrial/chloroplast ribosomal protei... 49 3e-06
>YNL185c [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 158
Score = 230 bits (586), Expect = 6e-61
Identities = 112/144 (77%), Positives = 124/144 (85%), Gaps = 9/144 (6%)
Query: 15 GAGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKS 74
GAGQAAPSPPVGPALGSKGIKAIDFCKEFNAR+AN+QPG P+PVLI IKPDRTF+FEMKS
Sbjct: 15 GAGQAAPSPPVGPALGSKGIKAIDFCKEFNARSANYQPGVPVPVLITIKPDRTFTFEMKS 74
Query: 75 PPTGYLLLKALSLEKGHGQPNI---------SNPDNVCGELSLKHIYEIAKIKKTDGRHA 125
PPTGYLLLKAL ++KGHGQPN+ P GELSLKH+YEIAKIKK+D RH+
Sbjct: 75 PPTGYLLLKALKMDKGHGQPNVGTMLGSAPAKGPTRALGELSLKHVYEIAKIKKSDERHS 134
Query: 126 ALELEGIVKSIIGVAKSMGIKVVP 149
LE+EGIVKSI+GVAKSMGIKVVP
Sbjct: 135 LLEMEGIVKSIVGVAKSMGIKVVP 158
>SPAC1486.07c [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 144
Score = 160 bits (405), Expect = 6e-40
Identities = 76/134 (56%), Positives = 99/134 (73%), Gaps = 4/134 (2%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
AG+A P+PP+GPALG++G+K+IDFCKEFNARTA + P TP+P I + P RTF+F + +P
Sbjct: 15 AGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTP 74
Query: 76 PTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGRHAALELEGIVKS 135
PT +L+ K L LEKG P ++ G+LSLKHIYEIAK+K TD +EL + KS
Sbjct: 75 PTSWLISKTLDLEKGSSSP----LHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLCKS 130
Query: 136 IIGVAKSMGIKVVP 149
+IG AKSMG+KVVP
Sbjct: 131 VIGTAKSMGVKVVP 144
>At4g35490 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 155
Score = 119 bits (298), Expect = 1e-27
Identities = 62/133 (46%), Positives = 84/133 (62%), Gaps = 4/133 (3%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
AG A P+PPVGPALG + + FCK+FNART ++P TP+ V I D +F F +KSP
Sbjct: 23 AGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNSFEFTVKSP 82
Query: 76 PTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGRHAALELEGIVKS 135
+ + KA ++KG +P + LS++H+YEIAK+K+TD + LE I KS
Sbjct: 83 TVSWYIKKAAGVDKGSTRPGHLSVTT----LSVRHVYEIAKVKQTDPFCQYMPLESICKS 138
Query: 136 IIGVAKSMGIKVV 148
IIG A SMGIK+V
Sbjct: 139 IIGTANSMGIKIV 151
>Hs7705618 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 192
Score = 118 bits (296), Expect = 3e-27
Identities = 62/135 (45%), Positives = 82/135 (59%), Gaps = 6/135 (4%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
AG A P PP+GP LG +G+ FCKEFN RT + + G P+P I +KPDRTF ++ P
Sbjct: 26 AGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQP 85
Query: 76 PTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGRHAA--LELEGIV 133
Y L A +EKG Q V G ++LKH+YEIA+IK D A + L +V
Sbjct: 86 TVSYFLKAAAGIEKGARQTG----KEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVV 141
Query: 134 KSIIGVAKSMGIKVV 148
+SIIG A+S+GI+VV
Sbjct: 142 RSIIGSARSLGIRVV 156
>CE00004 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 195
Score = 110 bits (276), Expect = 5e-25
Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 5/132 (3%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
A A+ +PP+GP LG +G+ +FCKEFN T +F+ G P+P I +KPDRT+ E+ +P
Sbjct: 29 AQMASAAPPLGPQLGQRGLNVANFCKEFNKETGHFKQGVPLPTRITVKPDRTYDLEICTP 88
Query: 76 PTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGRHAALELEGIVKS 135
T +LL +A + +G ++ D + G+L++KH+YEIAKIK D + LE I +
Sbjct: 89 TTTWLLKQAAGIGRGK-----ASKDEIVGKLTVKHLYEIAKIKSRDKALQHVPLEQICRM 143
Query: 136 IIGVAKSMGIKV 147
+I +++GI V
Sbjct: 144 LIKTCRTLGIDV 155
>7299888 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 196
Score = 105 bits (261), Expect = 3e-23
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
AG AA PP+GP LG + I FCK+FNA+TA + G P+P I++ DR++ + P
Sbjct: 30 AGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEGVPLPCRISVNSDRSYDLAIHHP 89
Query: 76 PTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGRHAALELEGIVKS 135
P + L +A +++G P V G ++LKH+YEIA IK D + L ++ + +
Sbjct: 90 PATFFLKQAAGIQRGTMTPG----KEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEM 145
Query: 136 IIGVAKSMGIKVV 148
+I +A++ GIKVV
Sbjct: 146 LISIARTCGIKVV 158
>At1g32990 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 222
Score = 98.2 bits (243), Expect = 4e-21
Identities = 56/134 (41%), Positives = 81/134 (59%), Gaps = 7/134 (5%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
AG+A P+PPVGPALGSKG+ + FCK++NARTA+ + G IPV I + D++F+F +K+P
Sbjct: 84 AGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVFDDKSFTFILKTP 142
Query: 76 PTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGRHAALELEGIVKS 135
P LLLKA +EKG P + G +++ + IA K D +E ++
Sbjct: 143 PASVLLLKAAGVEKGSKDPQ----QDKVGVITIDQLRTIAAEKLPDLN--CTTIESAMRI 196
Query: 136 IIGVAKSMGIKVVP 149
I G A +MGI + P
Sbjct: 197 IAGTAANMGIDIDP 210
>Hs17444495 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 130
Score = 69.3 bits (168), Expect = 2e-12
Identities = 32/75 (42%), Positives = 42/75 (55%)
Query: 16 AGQAAPSPPVGPALGSKGIKAIDFCKEFNARTANFQPGTPIPVLINIKPDRTFSFEMKSP 75
AG A P PP+GP LG + FCKEFN RT + + G P+ I +KPD TF ++ P
Sbjct: 26 AGLAMPGPPLGPVLGQRRASINQFCKEFNERTKDIKEGIPLLTKIFLKPDGTFEIKIGQP 85
Query: 76 PTGYLLLKALSLEKG 90
Y + A +EKG
Sbjct: 86 TVSYFVKAAAGIEKG 100
>At5g51610 [J] KOG3257 Mitochondrial/chloroplast ribosomal protein L11
Length = 182
Score = 48.5 bits (114), Expect = 3e-06
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 64 PDRTFSFEMKSPPTGYLLLKALSLEKGHGQPNISNPDNVCGELSLKHIYEIAKIKKTDGR 123
PD++F+F +K+PPT +LLLKA ++KG P G +++ + +IA++K +
Sbjct: 91 PDQSFTFILKTPPTSFLLLKAAGVKKGSKDPK----QIKVGMITIDQVRKIAEVKLPELN 146
Query: 124 HAALELEGIVKSIIGVAKSMGIKVVP 149
+ +++I G A +MGI + P
Sbjct: 147 --CTTIVSTMRTIAGTAGNMGIDIDP 170
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,657,261
Number of Sequences: 60738
Number of extensions: 372802
Number of successful extensions: 654
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 9
length of query: 149
length of database: 30,389,216
effective HSP length: 96
effective length of query: 53
effective length of database: 24,558,368
effective search space: 1301593504
effective search space used: 1301593504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)