ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2238 good U KOG0780 Intracellular trafficking, secretion, and vesicular transport Signal recognition particle, subunit Srp54
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2238 758818 760407 530
(530 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR088c [U] KOG0780 Signal recognition particle subunit Srp54 677 0.0
SPCC188.06c [U] KOG0780 Signal recognition particle subunit Srp54 507 e-143
Hs4507215 [U] KOG0780 Signal recognition particle subunit Srp54 426 e-119
CE09524 [U] KOG0780 Signal recognition particle subunit Srp54 424 e-118
7295492 [U] KOG0780 Signal recognition particle subunit Srp54 416 e-116
At1g15310 [U] KOG0780 Signal recognition particle subunit Srp54 377 e-104
At1g48900 [U] KOG0780 Signal recognition particle subunit Srp54 373 e-103
ECU04g0980 [U] KOG0780 Signal recognition particle subunit Srp54 359 5e-99
At5g49500 [U] KOG0780 Signal recognition particle subunit Srp54 353 4e-97
At5g03940 [U] KOG0780 Signal recognition particle subunit Srp54 211 2e-54
At2g45770 [U] KOG0780 Signal recognition particle subunit Srp54 120 5e-27
At4g30600 [U] KOG0781 Signal recognition particle receptor alpha... 109 9e-24
ECU10g0170 [U] KOG0781 Signal recognition particle receptor alph... 94 7e-19
YDR292c [U] KOG0781 Signal recognition particle receptor alpha s... 87 5e-17
7292603 [U] KOG0781 Signal recognition particle receptor alpha s... 84 4e-16
Hs4507223 [U] KOG0781 Signal recognition particle receptor alpha... 83 1e-15
Hs20481445 [U] KOG0781 Signal recognition particle receptor alph... 83 1e-15
SPBC3B9.03 [U] KOG0781 Signal recognition particle receptor alph... 80 1e-14
At5g66970 [U] KOG0780 Signal recognition particle subunit Srp54 69 2e-11
>YPR088c [U] KOG0780 Signal recognition particle subunit Srp54
Length = 541
Score = 677 bits (1746), Expect = 0.0
Identities = 355/541 (65%), Positives = 407/541 (74%), Gaps = 12/541 (2%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLADLGKRIN+AV NAISN Q D+ T+V MLK I TALLE+DVNI LVS+LR NI++
Sbjct: 1 MVLADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQ 60
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSP--FQPKKRQSNVIMFVGLQGS 118
LLS TNAQTKKLIQKTVFDELC LV CE + F PKKR++N+IMFVGLQGS
Sbjct: 61 LLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGS 120
Query: 119 GKTTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVA 178
GKTTSCTKLAVYYSKRG+KVGLVCADTFRAGAFDQLKQNAI+A+IPFYGSYTE +P KVA
Sbjct: 121 GKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVA 180
Query: 179 KDGVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQ 238
++G++ VDTSGRH QE+ LFQEM+EIS +KP QTIMVLDASIGQAAE Q
Sbjct: 181 EEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQQ 240
Query: 239 SKAFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVS 298
SKAFKES+DFG+IILTKMDGHARGGGAISAVA+TNTPIIFIGTGEHIHD EKFSPKSF+S
Sbjct: 241 SKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFIS 300
Query: 299 KLLGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANM 358
KLLGIGDIESL E+ QTVS+++DAK T+ENIQ+GKFTLLDFK QMQTIMKMGPLSNIA M
Sbjct: 301 KLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQM 360
Query: 359 IPGMGNMLNQFSEEETSKKMKTMVYIFDSMTKKELESDGRIFIDEPSRLVRVAKGSGTTV 418
IPGM NM+NQ EEETS+KMK MVY+ DSMTK+ELESDGR+FI+EP+R+VRVAKGSGT+V
Sbjct: 361 IPGMSNMMNQVGEEETSQKMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGTSV 420
Query: 419 FDIEXXXXXXXXXXXXXXXXX-----XXGGLPTKGGMPPKAGMPSIPGMPSIPGMPNISP 473
F++E G GMP GMP++PGMP++PGMP ++P
Sbjct: 421 FEVEMILMQQQMMARMAQTATQQQPGAPGANARMPGMPNMPGMPNMPGMPNMPGMPKVTP 480
Query: 474 XXXXXXXXXXXXN-----XXXXXXXXXXXXXXXXXXXXXQDIMGMMQDPSMQEMAKQFSG 528
N ++M MMQDP MQ+MAKQF
Sbjct: 481 QMMQQAQQKLKQNPGLMQNMMNMFGGGMGGGMGGGMPDMNEMMKMMQDPQMQQMAKQFGM 540
Query: 529 G 529
G
Sbjct: 541 G 541
>SPCC188.06c [U] KOG0780 Signal recognition particle subunit Srp54
Length = 522
Score = 507 bits (1305), Expect = e-143
Identities = 265/484 (54%), Positives = 349/484 (71%), Gaps = 19/484 (3%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MV ADLG+R+N+A+ + S + E V ++LK I TALLE DVN+RLV LR NIK
Sbjct: 1 MVFADLGRRLNSALGD-FSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKK 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
+ NV+ K+++QK VFDELC+LVD +V + F PKK + +VIM VGLQGSGK
Sbjct: 60 I----NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDA-FTPKKGRPSVIMMVGLQGSGK 114
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKD 180
TT+C+KLA++Y +RG K LV ADTFRAGAFDQLKQNAIKA++P++GSYTE +PV +AK+
Sbjct: 115 TTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKE 174
Query: 181 GVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSK 240
GVD VDTSGRHQQE LF EMVEIS A++P QTIM+LDASIGQAAE QSK
Sbjct: 175 GVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSK 234
Query: 241 AFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKL 300
AFKE+ADFG++I+TK+DGHA+GGGA+SAVA+T TPI+FIGTGEHI+D E+FSP+SF+SKL
Sbjct: 235 AFKETADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKL 294
Query: 301 LGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIP 360
LG+GD+E LME Q++ D KN ++N++QGKFT+ DF++Q+ IMK+GPLS +A+MIP
Sbjct: 295 LGLGDLEGLMEHVQSL--DFDKKNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIP 352
Query: 361 GMGNMLNQFSEEETSKKMKTMVYIFDSMTKKELESDGRIFIDEPSRLVRVAKGSGTTVFD 420
GM NM+N ++EE S +MK M+YI DSMT++EL+SDG +F+++PSR++RVA+GSGT+V +
Sbjct: 353 GMSNMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLE 412
Query: 421 IEXXXXXXXXXXXXXXXXXXXGGLPTKGGMPPKAGMPSIP-----------GMPSIPGMP 469
+E G+ K G P A + P M GMP
Sbjct: 413 VEETISQVRVFAQMAKKIGGKDGILGKLGGNPAAALKKDPRQLAAMQKRMQAMGMGGGMP 472
Query: 470 NISP 473
++P
Sbjct: 473 GLNP 476
>Hs4507215 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 504
Score = 426 bits (1094), Expect = e-119
Identities = 222/425 (52%), Positives = 307/425 (72%), Gaps = 10/425 (2%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLADLG++I +A+ ++SN E + +MLKE+ TALLE DVNI+LV +LREN+K+
Sbjct: 1 MVLADLGRKITSAL-RSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSA 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
+ ++ + +K+IQ VF EL LVD V + + P K + NVIMFVGLQGSGK
Sbjct: 60 I----DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKA-WTPTKGKQNVIMFVGLQGSGK 114
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKD 180
TT+C+KLA YY ++G+K L+CADTFRAGAFDQLKQNA KA+IPFYGSYTE +PV +A +
Sbjct: 115 TTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASE 174
Query: 181 GVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSK 240
GV+ VDTSGRH+QEDSLF+EM++++ A++P + V+DASIGQA E Q+K
Sbjct: 175 GVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAK 234
Query: 241 AFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKL 300
AFK+ D S+I+TK+DGHA+GGGA+SAVA+T +PIIFIGTGEHI DFE F + F+SKL
Sbjct: 235 AFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKL 294
Query: 301 LGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIP 360
LG+GDIE L+++ + DD + +E ++ G+FTL D Q Q IMKMGP S I MIP
Sbjct: 295 LGMGDIEGLIDKVNELK-LDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIP 353
Query: 361 GMG-NMLNQFSEEETSKKMKTMVYIFDSMTKKELES-DG-RIFIDEPSRLVRVAKGSGTT 417
G G + +++ +E+E+ ++K ++ I DSM +EL+S DG ++F +P R+ RVA+GSG +
Sbjct: 354 GFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVS 413
Query: 418 VFDIE 422
D++
Sbjct: 414 TRDVQ 418
>CE09524 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 496
Score = 424 bits (1089), Expect = e-118
Identities = 221/419 (52%), Positives = 295/419 (69%), Gaps = 10/419 (2%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLADLG++I NA+ + E + MLKE+ TAL+E+DV+IRLV +L++N+K
Sbjct: 1 MVLADLGRKIRNAI-GKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKA 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
+ N A ++ IQKTVF+EL LVD VT PF P K + NV MFVGLQGSGK
Sbjct: 60 I----NFEEIVGGANKRRYIQKTVFNELLKLVDPGVT-PFTPTKGRRNVFMFVGLQGSGK 114
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKD 180
TT+CTK+A YY ++G+K L+CADTFRAGAFDQLKQNA KA+IPFYGSY+E +PVK+A +
Sbjct: 115 TTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAE 174
Query: 181 GVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSK 240
GV+ VDTSGRH+QE SLF+EM+++S AV P + V+DASIGQA E Q++
Sbjct: 175 GVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDNVVFVMDASIGQACEAQAR 234
Query: 241 AFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKL 300
AF ++ D S+I+TK+D HA+GGGA+SAVA T +P+IFIGTGEHI DFE F PKSFV KL
Sbjct: 235 AFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKL 294
Query: 301 LGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIP 360
LG+GDI L++ + QD+ K + ++QG+FTL D Q Q IMKMGP S I MIP
Sbjct: 295 LGMGDIAGLVDMVNDIGIQDN-KELVGRLKQGQFTLRDMYEQFQNIMKMGPFSQIMGMIP 353
Query: 361 GMGN-MLNQFSEEETSKKMKTMVYIFDSMTKKELE--SDGRIFIDEPSRLVRVAKGSGT 416
G G+ + + +E+E+ ++K M+ + DSM+ KEL+ +F EP+R+ RVA+GSG+
Sbjct: 354 GFGSEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASELFTKEPNRVARVARGSGS 412
>7295492 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 508
Score = 416 bits (1068), Expect = e-116
Identities = 224/418 (53%), Positives = 294/418 (69%), Gaps = 10/418 (2%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLADLG++I A+ +++S E + SMLKEI ALLE DVNIRLV +LREN++
Sbjct: 1 MVLADLGRKITTAL-HSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAV 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
+ + + +++IQ VF EL LVD V P+QP K ++NV+MFVGLQGSGK
Sbjct: 60 I----DFDEMAGGLNKRRMIQSAVFKELVKLVDPGV-KPYQPIKGKANVVMFVGLQGSGK 114
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKD 180
TT+CTKLA +Y KR +K LVCADTFRAGA+DQ+KQNA KA+IPFYGSYTE +PV +A+D
Sbjct: 115 TTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQD 174
Query: 181 GVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSK 240
GVD VDTSGRH+QE+SLF+EM+ +S AV P I V+DA+IGQA E Q+K
Sbjct: 175 GVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAK 234
Query: 241 AFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKL 300
AFK+ D GS+I+TK+DGHA+GGGA+SAVA+T +PIIFIGTGEHI D E F K FVSKL
Sbjct: 235 AFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKL 294
Query: 301 LGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIP 360
LG+GDIE L+++ + D LE I+ G FT+ D Q Q IMKMGP S NMIP
Sbjct: 295 LGMGDIEGLIDKVNELK-LDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMNMIP 353
Query: 361 GMG-NMLNQFSEEETSKKMKTMVYIFDSMTKKELES-DG-RIFIDEPSRLVRVAKGSG 415
G + + + E+E+ ++K M+ + DSM+ EL++ DG ++F +P+R VRVA+G+G
Sbjct: 354 GFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQPNRCVRVAQGAG 411
>At1g15310 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 479
Score = 377 bits (968), Expect = e-104
Identities = 203/422 (48%), Positives = 286/422 (67%), Gaps = 9/422 (2%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLA+LG RI A+ ++N E + L EI ALL++DV+ LV +++ NIK
Sbjct: 1 MVLAELGGRITRAIQQ-MNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKI 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
+ N++ + +I++ +F ELC ++D + F PKK + +V+MFVGLQG+GK
Sbjct: 60 V----NLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPA-FAPKKAKPSVVMFVGLQGAGK 114
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKD 180
TT+CTK A Y+ K+GYK LVCADTFRAGAFDQLKQNA KAKIPFYGSYTE +PVK+A +
Sbjct: 115 TTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVE 174
Query: 181 GVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSK 240
GVD VDTSGRH+Q SLF+EM ++++A +P I V+D+SIGQAA Q++
Sbjct: 175 GVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAE 234
Query: 241 AFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKL 300
AFKE+ G++I+TKMDGHA+GGGA+SAVA+T +P+IFIGTGEH+ +FE F K FVS+L
Sbjct: 235 AFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Query: 301 LGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIP 360
LG GD L+++ Q V +D +EN+ QG FTL +Q Q +++ PL+ + +M+P
Sbjct: 295 LGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLP 353
Query: 361 GM-GNMLNQFSEEETSKKMKTMVYIFDSMTKKELESDGRIFIDEPSRLVRVAKGSGTTVF 419
G+ M+ + EE+ KMK + + DSMT KEL+S +E SR++R+A+GSG V
Sbjct: 354 GISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNE-SRIMRIARGSGRLVR 412
Query: 420 DI 421
++
Sbjct: 413 EV 414
>At1g48900 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 522
Score = 373 bits (957), Expect = e-103
Identities = 205/449 (45%), Positives = 285/449 (62%), Gaps = 35/449 (7%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLA+LG RI A+ +SN E + L EI ALL++DV+ LV ++ NIK
Sbjct: 1 MVLAELGGRITRAIQQ-MSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKI 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
+ N+ +++I++ +F ELC ++D + F PKK +++V+MFVGLQG+GK
Sbjct: 60 V----NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPA-FAPKKAKASVVMFVGLQGAGK 114
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYG------------- 167
TT+CTK A Y+ K+GYK LVCADTFRAGAFDQLKQNA KAKIPFYG
Sbjct: 115 TTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGRFGLGQYLHISGL 174
Query: 168 --------------SYTEPNPVKVAKDGVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVE 213
YTE +PVK+A +GVD VDTSGRH+QE SLF+EM +
Sbjct: 175 KRTSVTYMFLCPIIHYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQ 234
Query: 214 ISQAVKPKQTIMVLDASIGQAAEHQSKAFKESADFGSIILTKMDGHARGGGAISAVASTN 273
+++A KP I V+D+SIGQAA Q++AFK+S G++I+TKMDGHA+GGGA+SAVA+T
Sbjct: 235 VAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATK 294
Query: 274 TPIIFIGTGEHIHDFEKFSPKSFVSKLLGIGDIESLMERFQTVSDQDDAKNTLENIQQGK 333
+P+IFIGTGEH+ +FE F K FVS+LLG+GD +++ Q V +D LE + QG
Sbjct: 295 SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGN 354
Query: 334 FTLLDFKNQMQTIMKMGPLSNIANMIPGM-GNMLNQFSEEETSKKMKTMVYIFDSMTKKE 392
FTL +Q Q I+ MGPL + +M+PG+ M+ + E+E+ K+K + + DSMT E
Sbjct: 355 FTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDE 414
Query: 393 LESDGRIFIDEPSRLVRVAKGSGTTVFDI 421
L+S +E SR++R+A+GSG V ++
Sbjct: 415 LDSSNPKVFNE-SRMMRIARGSGRQVREV 442
>ECU04g0980 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 466
Score = 359 bits (922), Expect = 5e-99
Identities = 189/417 (45%), Positives = 284/417 (67%), Gaps = 15/417 (3%)
Query: 2 VLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTL 61
++ +LG+ I N ++N +S+ TD +++ ++EI +L+ ++VN R VS LR+ ++
Sbjct: 1 MITELGRSITNTLSNLLSSPATDQH--IETAIREICNSLILSNVNPRYVSDLRDELR-AK 57
Query: 62 LSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKT 121
L + F A +++Q V++ L +L+D T ++ +K +++V++FVGLQGSGKT
Sbjct: 58 LDPGKMAPGFNKA---RMVQNAVYERLVDLLDPR-TESYKIEKGRTSVVVFVGLQGSGKT 113
Query: 122 TSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKDG 181
TS K A +Y K+GYKVG+VCADTFRAGAFDQ++QNA+K K+PF+GS +E +PVKVA G
Sbjct: 114 TSICKYANFYKKKGYKVGIVCADTFRAGAFDQVRQNALKIKVPFFGS-SEADPVKVASAG 172
Query: 182 VDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKA 241
V+ VDTSGRH QE LF EM +I + + P + V+DA IGQ+AE Q+
Sbjct: 173 VERFRKERFELILVDTSGRHTQETELFTEMKDIIREISPSSIVFVMDAGIGQSAEDQAMG 232
Query: 242 FKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKLL 301
FK + D GSIILTK+DG + GGAIS+VA+T PI F+GTGE + D E F + FVS++L
Sbjct: 233 FKRAVDVGSIILTKIDGTTKAGGAISSVAATKCPIEFVGTGEGMDDLEAFDARRFVSRML 292
Query: 302 GIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIPG 361
G+GD+E LME+ ++ D K ++ ++QG+FTL DF +Q Q I+ +GP+S + MIPG
Sbjct: 293 GMGDVEGLMEKVGSLG--IDEKEVVKKLRQGRFTLGDFYDQFQKILSLGPISKLLEMIPG 350
Query: 362 MGNMLNQFSEEETSKKMKTMVYIFDSMTKKELESDGRIFIDEPSRLVRVAKGSGTTV 418
+ +E+T KK ++Y+FDS+++ EL+S G++F EPSR++RVA+GSGT+V
Sbjct: 351 FSGL--SLPDEDTFKK---LIYVFDSLSRGELDSTGQVFEKEPSRIMRVARGSGTSV 402
>At5g49500 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 497
Score = 353 bits (906), Expect = 4e-97
Identities = 192/424 (45%), Positives = 274/424 (64%), Gaps = 10/424 (2%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
MVLA+LG RI +A+ ++N E + L EI ALL++DV+ LV ++ NIK
Sbjct: 1 MVLAELGGRIMSAIQK-MNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKI 59
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGS-- 118
+ N+ +++I++ +F ELC ++D S F PKK + +V+MFVGLQG
Sbjct: 60 V----NLEDLAAGHNKRRIIEQAIFSELCKMLD-PGKSAFAPKKAKPSVVMFVGLQGEVL 114
Query: 119 GKTTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVA 178
K + + ++GYK LVCADTFRAGAFDQLKQNA K+KIP+YGSYT +PVK+A
Sbjct: 115 EKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIA 174
Query: 179 KDGVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQ 238
+GVD VDTSGRH+Q+ SLF+EM +IS+A KP I V+D+SIGQ A Q
Sbjct: 175 VEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQ 234
Query: 239 SKAFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVS 298
++AFK++ G++I+TKMDGHA+GGG +SAVA+T +P+IFIGTGEH+ +FE F K FVS
Sbjct: 235 ARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVS 294
Query: 299 KLLGIGDIESLMERFQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANM 358
+LLG GD+ + + Q V +D LE + GKFTL +Q Q ++ MGPL + +M
Sbjct: 295 RLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSM 354
Query: 359 IPGM-GNMLNQFSEEETSKKMKTMVYIFDSMTKKELESDGRIFIDEPSRLVRVAKGSGTT 417
+PGM M+ + E+E+ K+K + + DSMT +EL+S +E SR++R+A+GSG
Sbjct: 355 LPGMRAEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNPKVFNE-SRIMRIARGSGRI 413
Query: 418 VFDI 421
V ++
Sbjct: 414 VREV 417
>At5g03940 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 564
Score = 211 bits (537), Expect = 2e-54
Identities = 127/405 (31%), Positives = 201/405 (49%), Gaps = 7/405 (1%)
Query: 13 AVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVNAKFT 72
A + + E+ + + +++I ALLE DV++ +V R +++ + + +
Sbjct: 87 AAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKP 146
Query: 73 NAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKLAVYYS 132
+ Q K++ DEL L+ EV S Q K VI+ GLQG GKTT C KLA Y
Sbjct: 147 DQQLVKIVH----DELVKLMGGEV-SELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLK 201
Query: 133 KRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKDGVDXXXXXXXXX 192
K+G L+ D +R A DQL + +P Y + T+ P +AK G+
Sbjct: 202 KQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDV 261
Query: 193 XXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFKESADFGSII 252
+DT+GR Q + + E+ ++ + + P + ++V+DA GQ A F I
Sbjct: 262 VIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAI 321
Query: 253 LTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKLLGIGDIESLMER 312
LTK+DG +RGG A+S + PI +G GE + D E F P ++LG+GD+ S +E+
Sbjct: 322 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEK 381
Query: 313 FQTVSDQDDAKNTLENIQQGKFTLLDFKNQMQTIMKMGPLSNIANMIPGMGNMLNQFSEE 372
V Q+DA++ + I KF DF Q + + KMG ++ + MIPGMG ++
Sbjct: 382 ATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGK-VSPAQIR 440
Query: 373 ETSKKMKTMVYIFDSMTKKELESDGRIFIDEPSRLVRVAKGSGTT 417
E K + M + + MT +E E + + P R R+AK SG T
Sbjct: 441 EAEKNLLVMEAMIEVMTPEERERP-ELLAESPERRKRIAKDSGKT 484
>At2g45770 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 373
Score = 120 bits (301), Expect = 5e-27
Identities = 89/280 (31%), Positives = 132/280 (46%), Gaps = 15/280 (5%)
Query: 32 MLKEIATALLEND----VNIRLVSRLRENIKNTLLSNANVNAKFTNAQTKKLIQKTVFDE 87
+L E+ ALL +D + +R+V RLRE+I + L + + K + ++++V +
Sbjct: 96 VLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGS-EIKVDLNEIVDALKESVLEM 154
Query: 88 LCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKLAVYYSKRGYKVGLVCADTFR 147
L + Q R+ VIM VG+ G GKTTS KLA G KV + DTFR
Sbjct: 155 LAKK---NSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 211
Query: 148 AGAFDQLKQNAIKAKIPFY-GSYTEPNPVKVAKDGVDXXXXXXXXXXXVDTSGRHQQEDS 206
A A DQL+ A + + V V DTSGR S
Sbjct: 212 AAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYS 271
Query: 207 LFQEMVEISQAV------KPKQTIMVLDASIGQAAEHQSKAFKESADFGSIILTKMDGHA 260
L +E++ +AV P + ++VLD + G Q++ F E +ILTK+DG A
Sbjct: 272 LMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSA 331
Query: 261 RGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKL 300
RGG +S V P+ FIG GE + D + F P++FV+ +
Sbjct: 332 RGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 371
>At4g30600 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 634
Score = 109 bits (273), Expect = 9e-24
Identities = 75/305 (24%), Positives = 146/305 (47%), Gaps = 23/305 (7%)
Query: 13 AVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSN-----ANV 67
++T + E+TD ++++ + + T + ++ +L + +++ LS+ + V
Sbjct: 336 SITGKANLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTV 395
Query: 68 NAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKL 127
A +A + L + D L ++ + ++R+ V++FVG+ G GK+T+ K+
Sbjct: 396 QAAMEDALVRILTPRRSIDILRDVHAAK-------EQRKPYVVVFVGVNGVGKSTNLAKV 448
Query: 128 AVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKDGVDXXXX 187
A + + V + DTFR+GA +QL+ +A + +IP + E +P VAK+ +
Sbjct: 449 AYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATR 508
Query: 188 XXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFKESAD 247
VDT+GR Q + L + + ++ +P + V +A +G A Q F +
Sbjct: 509 NGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLS 568
Query: 248 ----------FGSIILTKMDG-HARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSF 296
I+LTK D + G A+S V + +P++F+G G+ D +K + K+
Sbjct: 569 DLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAI 628
Query: 297 VSKLL 301
V LL
Sbjct: 629 VKTLL 633
>ECU10g0170 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 425
Score = 93.6 bits (231), Expect = 7e-19
Identities = 75/289 (25%), Positives = 128/289 (43%), Gaps = 16/289 (5%)
Query: 26 ETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVNAKFTNAQTKKLIQKTVF 85
E V + ++ T L+ +V+ ++ L E+I + L A K + +T K V
Sbjct: 138 EIDVNELKDKMTTHLISKNVSYQITKTLVEDIMSEL---AEEEIKSVSEKTFKEKMANVL 194
Query: 86 DELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKLAVYYSKRGYKVGLVCADT 145
+L VD E + I FVG+ G GK+TS K+ + + +V + DT
Sbjct: 195 SKLIPSVDHEEMLDRIRGHKGVFSICFVGVNGVGKSTSLAKICYWLLQNKLRVYIAACDT 254
Query: 146 FRAGAFDQLKQNAIKAK-----IPFYGSYTEPNPVKVAKDGVDXXXXXXXXXXXVDTSGR 200
FRAGA +QLK + + K + FY + VA+ + +DT+GR
Sbjct: 255 FRAGAIEQLKTHVERFKLGGHLVGFYEKGYGKDDASVARCAIQEAQHEGYDVILIDTAGR 314
Query: 201 HQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFK-------ESADFGSIIL 253
+ +L + ++ + +P I V +A +G + + F +S SI+L
Sbjct: 315 MHNKKNLMASLTKLMKINRPDHIIYVGEALVGSDSLDHIREFNKAIRDADQSRKIDSILL 374
Query: 254 TKMDG-HARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKLL 301
TK+D R G ++ S++ PI+F+G G+ D K + VS L+
Sbjct: 375 TKVDTVDDRIGQILNMAFSSHAPILFLGVGQSNSDLSKIGSEDIVSSLM 423
>YDR292c [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 621
Score = 87.4 bits (215), Expect = 5e-17
Identities = 71/321 (22%), Positives = 136/321 (42%), Gaps = 37/321 (11%)
Query: 18 ISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVNAKFTNAQTK 77
+ +T E+ ++S+L+++ L+ +V L + + + L+ + N +
Sbjct: 300 VLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTAR 359
Query: 78 KLIQKTVFDELCNLVDCEVTSPFQPKKRQSN--------VIMFVGLQGSGKTTSCTKLAV 129
+ + K + L V ++ Q K+ + + V VG+ G GK+T+ +KLA
Sbjct: 360 ESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAF 419
Query: 130 YYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNP--------------- 174
+ + +KV +V DTFR+GA +QL+ + S+ +
Sbjct: 420 WLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFE 479
Query: 175 ---------VKVAKDGVDXXXXXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIM 225
K+AK + +DT+GR + +L + + KP + IM
Sbjct: 480 AGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIM 539
Query: 226 VLDASIG----QAAEHQSKAFKESADFGSIILTKMDGHARG-GGAISAVASTNTPIIFIG 280
V +A +G Q A++ + AF + + I++K D G ++ V +T PI+F+G
Sbjct: 540 VGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYATGIPILFVG 599
Query: 281 TGEHIHDFEKFSPKSFVSKLL 301
G+ D S K V+ L+
Sbjct: 600 VGQTYTDLRTLSVKWAVNTLM 620
>7292603 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 631
Score = 84.3 bits (207), Expect = 4e-16
Identities = 71/301 (23%), Positives = 132/301 (43%), Gaps = 26/301 (8%)
Query: 29 VQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVNAKFTNAQTKKLIQKTVFDEL 88
+Q L+++ L+ +V + ++L +++ +L +Q K+ + +++ L
Sbjct: 315 LQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRIL 374
Query: 89 CNLVDCEVTSPFQPKKRQSN--VIMFVGLQGSGKTTSCTKLAVYYSKRGYKVGLVCADTF 146
++ KR I+F G+ G GK+T+ K+ + + + V + DTF
Sbjct: 375 SPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTF 434
Query: 147 RAGAFDQLKQ-----NAI--------KAKIPFYGSYTEPNPVKVAKDGVDXXXXXXXXXX 193
RAGA +QL+ NA+ + + Y + +A + +
Sbjct: 435 RAGAVEQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVV 494
Query: 194 XVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFKES-ADFGS-- 250
VDT+GR Q + L + + ++ + P + V +A +G A Q F +S AD+ S
Sbjct: 495 LVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNE 554
Query: 251 -------IILTKMDG-HARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKLLG 302
I+LTK D + G AIS T PI+F+GTG+ D + + + V+ L+
Sbjct: 555 NPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614
Query: 303 I 303
I
Sbjct: 615 I 615
>Hs4507223 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 638
Score = 82.8 bits (203), Expect = 1e-15
Identities = 69/306 (22%), Positives = 133/306 (42%), Gaps = 40/306 (13%)
Query: 29 VQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVNAKFTNAQTKKLIQKTVF--- 85
++S+L ++ L+ +V + +L E++ N L + K+ +Q+++
Sbjct: 338 MESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQIL 397
Query: 86 ------DELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKLAVYYSKRGYKVG 139
D L +++D + ++++ V+ F G+ G GK+T+ K++ + + G+ V
Sbjct: 398 QPQRRVDMLRDIMDAQ-------RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVL 450
Query: 140 LVCADTFRAGAFDQLK-------------QNAIKAKIPFYGSYTEPNPVKVAKDGVDXXX 186
+ DTFRAGA +QL+ ++ + + + + +A + +
Sbjct: 451 IAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFAR 510
Query: 187 XXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFKES- 245
VDT+GR Q L + ++ P + V +A +G A Q F +
Sbjct: 511 NQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRAL 570
Query: 246 AD---------FGSIILTKMDG-HARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKS 295
AD I+LTK D + G AIS T+ PI+F+GTG+ D + K+
Sbjct: 571 ADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKA 630
Query: 296 FVSKLL 301
V+ L+
Sbjct: 631 VVAALM 636
>Hs20481445 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 638
Score = 82.8 bits (203), Expect = 1e-15
Identities = 69/306 (22%), Positives = 133/306 (42%), Gaps = 40/306 (13%)
Query: 29 VQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVNAKFTNAQTKKLIQKTVF--- 85
++S+L ++ L+ +V + +L E++ N L + K+ +Q+++
Sbjct: 338 MESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQIL 397
Query: 86 ------DELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKLAVYYSKRGYKVG 139
D L +++D + ++++ V+ F G+ G GK+T+ K++ + + G+ V
Sbjct: 398 QPQRRVDMLRDIMDAQ-------RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVL 450
Query: 140 LVCADTFRAGAFDQLK-------------QNAIKAKIPFYGSYTEPNPVKVAKDGVDXXX 186
+ DTFRAGA +QL+ ++ + + + + +A + +
Sbjct: 451 IAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFAR 510
Query: 187 XXXXXXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFKES- 245
VDT+GR Q L + ++ P + V +A +G A Q F +
Sbjct: 511 NQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRAL 570
Query: 246 AD---------FGSIILTKMDG-HARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKS 295
AD I+LTK D + G AIS T+ PI+F+GTG+ D + K+
Sbjct: 571 ADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKA 630
Query: 296 FVSKLL 301
V+ L+
Sbjct: 631 VVAALM 636
>SPBC3B9.03 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 547
Score = 79.7 bits (195), Expect = 1e-14
Identities = 67/295 (22%), Positives = 127/295 (42%), Gaps = 25/295 (8%)
Query: 26 ETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNA---------NVNAKFTNAQT 76
E + +LK++ L + +V + L E++K +L++ VN F + T
Sbjct: 258 EEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLT 317
Query: 77 KKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGKTTSCTKLAVYYSKRGY 136
+ L T D L ++ + + + I +G+ G GK+T+ K+A + +
Sbjct: 318 QILTPSTSLDLLHSI------RSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNF 371
Query: 137 KVGLVCADTFRAGAFDQL------KQNAIKAKIPFYGSYTEPNPVKVAKDGVDXXXXXXX 190
++ + DTFR+GA +QL Q+ + I + + V K+ V+
Sbjct: 372 RILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSF 431
Query: 191 XXXXVDTSGRHQQEDSLFQEMVEISQAVKPKQTIMVLDASIGQAAEHQSKAFKES---AD 247
+DT+GR + L + + ++A K + V +A +G + Q+K F+ S
Sbjct: 432 DVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSLAQAKHFQASLYHRP 491
Query: 248 FGSIILTKMDGHAR-GGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVSKLL 301
I++K+D + G + V + PIIF+G G+ D S V +L+
Sbjct: 492 LDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVVDQLM 546
>At5g66970 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 171
Score = 68.6 bits (166), Expect = 2e-11
Identities = 54/169 (31%), Positives = 85/169 (49%), Gaps = 13/169 (7%)
Query: 1 MVLADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNT 60
M L ++ RI + D T ++S L EI ALL+ D+ V + I+
Sbjct: 1 MALEEVRGRIGRSFEEMNKTSNMDC-TKLKSCLNEITCALLDADIPRLAV----DEIETK 55
Query: 61 LLSNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQSNVIMFVGLQGSGK 120
L N+ A KK ++ EL + +D ++ + K S ++MF+GL+G K
Sbjct: 56 SLEIINL----PKAPKKK--GALIYMELSSKLDPGKSALIRGKLEPS-IVMFIGLRGVDK 108
Query: 121 TTSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSY 169
T +C K A Y+ K+G++ LVCADTF+ AF +L + A K ++P Y Y
Sbjct: 109 TKTCAKYARYHRKKGFRPALVCADTFKFDAFVRLNK-AAKDEVPVYARY 156
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,002,917
Number of Sequences: 60738
Number of extensions: 1005470
Number of successful extensions: 9562
Number of sequences better than 1.0e-05: 19
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9479
Number of HSP's gapped (non-prelim): 23
length of query: 530
length of database: 30,389,216
effective HSP length: 111
effective length of query: 419
effective length of database: 23,647,298
effective search space: 9908217862
effective search space used: 9908217862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)