ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2306 good A KOG3459 RNA processing and modification Small nuclear ribonucleoprotein (snRNP) Sm core protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2306 782856 783185 110
(110 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR275w [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm c... 152 7e-38
SPAC2C4.03c [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) ... 116 6e-27
7298930 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm c... 112 6e-26
Hs4759158 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm... 111 2e-25
CE08945 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm c... 108 1e-24
At3g62840 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm... 102 7e-23
At2g47640 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm... 102 7e-23
Hs17471847 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) S... 97 4e-21
ECU10g1580 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) S... 75 2e-14
CE28143 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 53 8e-08
Hs7657315 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 48 2e-06
At1g21190 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 47 3e-06
At1g76860 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 46 1e-05
>YLR275w [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 110
Score = 152 bits (384), Expect = 7e-38
Identities = 72/101 (71%), Positives = 87/101 (85%)
Query: 10 DLSRSELSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCN 69
D + ELSR EL +LEEFE K+GPMSLI ++M+ RTPVIISLRNNHK+IARVK+FD+HCN
Sbjct: 7 DRPKHELSRAELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCN 66
Query: 70 MVLENVKEIWTENVNGKKVNRERFVAKLFLRGDSVIIVVKT 110
MVLENVKE+WTE +NRERF++KLFLRGDSVI+V+KT
Sbjct: 67 MVLENVKELWTEKKGKNVINRERFISKLFLRGDSVIVVLKT 107
>SPAC2C4.03c [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 115
Score = 116 bits (290), Expect = 6e-27
Identities = 55/106 (51%), Positives = 79/106 (73%), Gaps = 6/106 (5%)
Query: 10 DLSRSELSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCN 69
D RSELS EL +LEE+E GP+S++++++ V+I+ RNN KL+ARVK+FD+H N
Sbjct: 6 DKPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSN 65
Query: 70 MVLENVKEIWTE------NVNGKKVNRERFVAKLFLRGDSVIIVVK 109
MVLENVKE+WTE GK +N++RF++K+FLRGD V++VV+
Sbjct: 66 MVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVR 111
>7298930 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 119
Score = 112 bits (281), Expect = 6e-26
Identities = 56/104 (53%), Positives = 79/104 (75%), Gaps = 7/104 (6%)
Query: 13 RSELSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVL 72
+SEL+ +EL + EE E GP+S++ +S+ T V+I+ RNN KL+ RVK+FD+HCNMVL
Sbjct: 7 KSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVL 66
Query: 73 ENVKEIWTE---NVNGKK----VNRERFVAKLFLRGDSVIIVVK 109
ENVKE+WTE GKK VN++RF++K+FLRGDSVI+V++
Sbjct: 67 ENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLR 110
>Hs4759158 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 118
Score = 111 bits (277), Expect = 2e-25
Identities = 54/104 (51%), Positives = 80/104 (76%), Gaps = 7/104 (6%)
Query: 13 RSELSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVL 72
+SE++ +EL + EE E GP+S++ +S+ T V+I+ RNN KL+ RVK+FD+HCNMVL
Sbjct: 8 KSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVL 67
Query: 73 ENVKEIWTE---NVNGKK----VNRERFVAKLFLRGDSVIIVVK 109
ENVKE+WTE + GKK VN++R+++K+FLRGDSVI+V++
Sbjct: 68 ENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111
>CE08945 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 118
Score = 108 bits (270), Expect = 1e-24
Identities = 53/104 (50%), Positives = 73/104 (69%), Gaps = 7/104 (6%)
Query: 13 RSELSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVL 72
RSE++ +EL E+ E GP+S++ S+ V+I+ RNN KL+ RVK+FD+HCNMVL
Sbjct: 8 RSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVL 67
Query: 73 ENVKEIWTE-------NVNGKKVNRERFVAKLFLRGDSVIIVVK 109
ENVKE+WTE K V ++RF++K+FLRGDSVI+VVK
Sbjct: 68 ENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVK 111
>At3g62840 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 108
Score = 102 bits (255), Expect = 7e-23
Identities = 52/101 (51%), Positives = 72/101 (70%), Gaps = 7/101 (6%)
Query: 16 LSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENV 75
+ D + EE E GP+S++ S+ T V+I+ RNN KL+ RV++FD+HCNMVLENV
Sbjct: 5 MEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENV 64
Query: 76 KEIWTE---NVNGKK----VNRERFVAKLFLRGDSVIIVVK 109
+E+WTE GKK VNR+RF++K+FLRGDSVIIV++
Sbjct: 65 REMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLR 105
>At2g47640 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 108
Score = 102 bits (255), Expect = 7e-23
Identities = 52/101 (51%), Positives = 72/101 (70%), Gaps = 7/101 (6%)
Query: 16 LSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENV 75
+ D + EE E GP+S++ S+ T V+I+ RNN KL+ RV++FD+HCNMVLENV
Sbjct: 5 MEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENV 64
Query: 76 KEIWTE---NVNGKK----VNRERFVAKLFLRGDSVIIVVK 109
+E+WTE GKK VNR+RF++K+FLRGDSVIIV++
Sbjct: 65 REMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLR 105
>Hs17471847 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 117
Score = 97.1 bits (240), Expect = 4e-21
Identities = 48/104 (46%), Positives = 75/104 (71%), Gaps = 6/104 (5%)
Query: 12 SRSELSRDELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMV 71
S+SE++ +EL + EE E GP+S++ +S+ T V+I+ R+N KL+ VK+F +HCNMV
Sbjct: 7 SKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMV 66
Query: 72 LENVKEIWTE---NVNGKK---VNRERFVAKLFLRGDSVIIVVK 109
LENVKE WTE + GKK VN++ +++++FL GD VI+V++
Sbjct: 67 LENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLR 110
>ECU10g1580 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 135
Score = 74.7 bits (182), Expect = 2e-14
Identities = 39/97 (40%), Positives = 65/97 (66%), Gaps = 11/97 (11%)
Query: 19 DELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEI 78
D+ + E EMK GP+SL+R +M++ PV++SLR+N K++ RV ++D+H N+++E+ KE+
Sbjct: 8 DDPNEKETMEMK-GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKEL 66
Query: 79 WTENVNGKKVNRE--------RFVAKLFLRGDSVIIV 107
T GK R+ R + K+F+RGD+VI+V
Sbjct: 67 GT--TRGKNKGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>CE28143 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 102
Score = 52.8 bits (125), Expect = 8e-08
Identities = 33/81 (40%), Positives = 50/81 (60%), Gaps = 8/81 (9%)
Query: 33 PMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKE-IWTENVNGKKVNR- 90
P+ L+R S+ +R V + +RN+ +L R+++FD+H NMVL V+E I T V+
Sbjct: 17 PLDLLRLSLDER--VYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEI 74
Query: 91 ----ERFVAKLFLRGDSVIIV 107
+R V LF+RGDSVI+V
Sbjct: 75 YKQTKRVVPMLFVRGDSVILV 95
>Hs7657315 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 102
Score = 48.1 bits (113), Expect = 2e-06
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 19 DELTQLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEI 78
D++ Q + P+ LIR S+ +R + + +RN+ +L R+ ++D+H NM+L +V+E
Sbjct: 3 DDVDQQQTTNTVEEPLDLIRLSLDER--IYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 79 WT------ENVNGKKVNRERFVAKLFLRGDSVIIV 107
T E + +R + LF+RGD V++V
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLV 95
>At1g21190 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 97
Score = 47.4 bits (111), Expect = 3e-06
Identities = 29/81 (35%), Positives = 53/81 (64%), Gaps = 8/81 (9%)
Query: 33 PMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWT----ENVNGKKV 88
P+ LIR S+ +R + + LR++ +L ++ +FD+H NM+L +V+E+ T ++ +++
Sbjct: 12 PLDLIRLSIEER--IYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEI 69
Query: 89 NR--ERFVAKLFLRGDSVIIV 107
R +R V LF+RGD VI+V
Sbjct: 70 VRTTKRTVPFLFVRGDGVILV 90
>At1g76860 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 98
Score = 45.8 bits (107), Expect = 1e-05
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 33 PMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKE-IWTENVNGKKVNR- 90
P+ LIR S+ +R + + LR++ +L ++ +FD+H NM+L +V+E I T ++ +
Sbjct: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69
Query: 91 ----ERFVAKLFLRGDSVIIV 107
+R + LF+RGD VI+V
Sbjct: 70 VRTTKRTIEFLFVRGDGVILV 90
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,732,703
Number of Sequences: 60738
Number of extensions: 195741
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 13
length of query: 110
length of database: 30,389,216
effective HSP length: 86
effective length of query: 24
effective length of database: 25,165,748
effective search space: 603977952
effective search space used: 603977952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)