ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2356 check: MH A KOG0343 RNA processing and modification RNA Helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2356 804095 801786 -770
(770 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL033w [A] KOG0343 RNA Helicase 1051 0.0
SPAC1093.05 [A] KOG0343 RNA Helicase 669 0.0
Hs13514831 [A] KOG0343 RNA Helicase 490 e-138
7293369 [A] KOG0343 RNA Helicase 477 e-134
At5g54910 [A] KOG0343 RNA Helicase 458 e-128
CE25231 [A] KOG0343 RNA Helicase 442 e-123
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 326 9e-89
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 320 5e-87
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 318 3e-86
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 315 1e-85
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 309 9e-84
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 308 2e-83
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 303 5e-82
ECU10g1680 [A] KOG0343 RNA Helicase 293 9e-79
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 238 2e-62
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 238 3e-62
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 237 6e-62
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 231 4e-60
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 230 5e-60
CE00337 [A] KOG0330 ATP-dependent RNA helicase 226 8e-59
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 226 1e-58
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 226 1e-58
7299006 [A] KOG0345 ATP-dependent RNA helicase 224 3e-58
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 223 1e-57
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 221 4e-57
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 221 4e-57
YLL008w [A] KOG0338 ATP-dependent RNA helicase 219 1e-56
7298752 [A] KOG0330 ATP-dependent RNA helicase 218 2e-56
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 218 4e-56
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 218 4e-56
YHR065c [A] KOG0330 ATP-dependent RNA helicase 216 8e-56
CE03821 [A] KOG0345 ATP-dependent RNA helicase 214 5e-55
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 214 5e-55
7293348 [A] KOG0348 ATP-dependent RNA helicase 212 2e-54
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 211 3e-54
7304081 [A] KOG0338 ATP-dependent RNA helicase 211 4e-54
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 210 6e-54
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 207 5e-53
YFL002c [A] KOG0345 ATP-dependent RNA helicase 204 4e-52
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 203 9e-52
CE27030 [A] KOG0338 ATP-dependent RNA helicase 201 4e-51
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 201 5e-51
YDL160c [A] KOG0326 ATP-dependent RNA helicase 198 2e-50
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 198 2e-50
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 197 7e-50
CE27553 [A] KOG0337 ATP-dependent RNA helicase 196 1e-49
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 194 3e-49
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 192 1e-48
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 192 1e-48
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 191 3e-48
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 191 4e-48
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 191 4e-48
YKR024c [A] KOG0348 ATP-dependent RNA helicase 190 6e-48
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 190 6e-48
CE00839 [A] KOG0326 ATP-dependent RNA helicase 183 8e-46
7303950 [A] KOG0340 ATP-dependent RNA helicase 183 1e-45
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 182 2e-45
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 182 2e-45
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 182 2e-45
7296891 [A] KOG0341 DEAD-box protein abstrakt 182 2e-45
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 182 2e-45
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 182 2e-45
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 182 2e-45
7294797 [A] KOG0339 ATP-dependent RNA helicase 182 2e-45
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 181 5e-45
7297629 [A] KOG0326 ATP-dependent RNA helicase 181 5e-45
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 180 6e-45
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 180 8e-45
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 180 8e-45
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 179 1e-44
CE23832 [A] KOG0341 DEAD-box protein abstrakt 179 1e-44
YPL119c [A] KOG0335 ATP-dependent RNA helicase 178 2e-44
SPCC10H11.01 [A] KOG0334 RNA helicase 178 3e-44
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 178 3e-44
YHR169w [A] KOG0340 ATP-dependent RNA helicase 176 9e-44
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 176 9e-44
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 176 9e-44
YDL031w [A] KOG0337 ATP-dependent RNA helicase 176 1e-43
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 176 1e-43
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 176 1e-43
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 176 1e-43
7295314 [A] KOG0331 ATP-dependent RNA helicase 176 2e-43
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 175 3e-43
YOR204w [A] KOG0335 ATP-dependent RNA helicase 174 5e-43
7299061 [A] KOG0335 ATP-dependent RNA helicase 174 5e-43
7296646 [A] KOG0331 ATP-dependent RNA helicase 174 5e-43
CE09012 [A] KOG0335 ATP-dependent RNA helicase 174 6e-43
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 173 8e-43
YNL112w [A] KOG0331 ATP-dependent RNA helicase 173 1e-42
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 173 1e-42
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 172 1e-42
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 172 1e-42
7294824 [K] KOG4284 DEAD box protein 172 1e-42
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 172 2e-42
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 172 2e-42
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 172 2e-42
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 172 2e-42
At1g20920 [A] KOG0334 RNA helicase 172 2e-42
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 171 3e-42
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 171 3e-42
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 171 3e-42
CE28031 [A] KOG0334 RNA helicase 171 4e-42
CE27427 [A] KOG0334 RNA helicase 171 4e-42
CE25121 [A] KOG0335 ATP-dependent RNA helicase 171 4e-42
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 171 5e-42
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 171 5e-42
CE07736 [A] KOG0335 ATP-dependent RNA helicase 171 5e-42
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 170 7e-42
7290853 [A] KOG0331 ATP-dependent RNA helicase 170 7e-42
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 170 9e-42
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 169 1e-41
7293060 [A] KOG0334 RNA helicase 169 1e-41
YGL078c [A] KOG0331 ATP-dependent RNA helicase 169 1e-41
CE18785 [A] KOG0331 ATP-dependent RNA helicase 169 2e-41
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 169 2e-41
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 168 3e-41
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 167 6e-41
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 166 1e-40
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 166 1e-40
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 166 1e-40
Hs14251212 [K] KOG4284 DEAD box protein 166 1e-40
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 166 1e-40
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 166 1e-40
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 166 1e-40
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 166 1e-40
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 166 1e-40
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 166 1e-40
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 166 2e-40
7298204 [A] KOG0335 ATP-dependent RNA helicase 166 2e-40
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 166 2e-40
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 165 2e-40
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 164 5e-40
Hs7662318 [A] KOG0334 RNA helicase 164 6e-40
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 164 6e-40
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 163 8e-40
YBR142w [A] KOG0347 RNA helicase 163 1e-39
At3g16840 [A] KOG0347 RNA helicase 163 1e-39
SPBC4F6.07c [A] KOG0347 RNA helicase 162 1e-39
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 162 1e-39
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 162 2e-39
CE11190 [A] KOG0347 RNA helicase 162 2e-39
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 161 3e-39
CE23814 [A] KOG0340 ATP-dependent RNA helicase 161 3e-39
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 160 5e-39
CE28369 [A] KOG0335 ATP-dependent RNA helicase 160 5e-39
CE24451 [A] KOG0335 ATP-dependent RNA helicase 160 5e-39
CE17559 [A] KOG0339 ATP-dependent RNA helicase 160 5e-39
YOR046c [A] KOG0332 ATP-dependent RNA helicase 159 2e-38
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 158 3e-38
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 158 3e-38
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 158 3e-38
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 157 4e-38
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 157 6e-38
CE29052 [A] KOG0335 ATP-dependent RNA helicase 156 1e-37
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 156 1e-37
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 156 1e-37
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 156 1e-37
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 155 2e-37
7298989 [A] KOG0336 ATP-dependent RNA helicase 155 2e-37
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 155 3e-37
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 153 8e-37
At4g34910 [A] KOG0346 RNA helicase 153 1e-36
CE03025 [A] KOG0329 ATP-dependent RNA helicase 152 2e-36
7296990 [A] KOG0329 ATP-dependent RNA helicase 152 2e-36
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 152 2e-36
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 151 3e-36
YGL171w [A] KOG0344 ATP-dependent RNA helicase 150 7e-36
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 150 9e-36
CE06239 [A] KOG0344 ATP-dependent RNA helicase 150 9e-36
CE22474 [A] KOG0336 ATP-dependent RNA helicase 149 2e-35
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 149 2e-35
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 148 3e-35
At3g09620 [A] KOG0334 RNA helicase 148 3e-35
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 147 5e-35
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 147 6e-35
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 146 1e-34
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 146 1e-34
YBR237w [A] KOG0334 RNA helicase 145 2e-34
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 144 4e-34
Hs9506931 [A] KOG0346 RNA helicase 144 5e-34
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 144 5e-34
7293941 [A] KOG0344 ATP-dependent RNA helicase 143 9e-34
YDL084w [A] KOG0329 ATP-dependent RNA helicase 142 2e-33
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 141 3e-33
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 140 7e-33
CE27728 [A] KOG0346 RNA helicase 140 1e-32
CE28485 [K] KOG4284 DEAD box protein 138 3e-32
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 137 8e-32
YLR276c [A] KOG0346 RNA helicase 135 2e-31
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 134 5e-31
CE18221 [A] KOG0332 ATP-dependent RNA helicase 133 1e-30
CE18220 [A] KOG0332 ATP-dependent RNA helicase 133 1e-30
CE18219 [A] KOG0332 ATP-dependent RNA helicase 133 1e-30
CE11402 [A] KOG0334 RNA helicase 132 2e-30
Hs9966805 [A] KOG0347 RNA helicase 131 4e-30
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 131 4e-30
Hs22045464 [A] KOG0343 RNA Helicase 131 4e-30
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 130 6e-30
SPCC1494.06c [A] KOG0346 RNA helicase 130 8e-30
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 130 8e-30
7295505 [A] KOG0346 RNA helicase 130 8e-30
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 129 1e-29
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 129 2e-29
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 127 8e-29
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 126 1e-28
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 125 2e-28
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 125 2e-28
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 125 3e-28
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 121 5e-27
7296165 [A] KOG0330 ATP-dependent RNA helicase 120 6e-27
CE29051 [A] KOG0335 ATP-dependent RNA helicase 120 8e-27
7302399 [A] KOG0347 RNA helicase 117 9e-26
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 116 1e-25
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 115 3e-25
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 108 4e-23
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 103 1e-21
CE26264 [A] KOG0335 ATP-dependent RNA helicase 95 5e-19
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 93 1e-18
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 91 5e-18
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 91 7e-18
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 89 3e-17
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 89 3e-17
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 88 6e-17
7290730 [A] KOG0331 ATP-dependent RNA helicase 86 2e-16
YGL064c [A] KOG0335 ATP-dependent RNA helicase 86 3e-16
CE27336 [A] KOG0334 RNA helicase 81 5e-15
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 81 7e-15
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 77 1e-13
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 76 2e-13
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 75 5e-13
CE28975 [A] KOG0335 ATP-dependent RNA helicase 74 6e-13
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 72 2e-12
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 65 4e-10
Hs22041318 [A] KOG0342 ATP-dependent RNA helicase pitchoune 64 7e-10
CE27320 [A] KOG0335 ATP-dependent RNA helicase 64 7e-10
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 63 2e-09
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 61 6e-09
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 60 2e-08
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 59 3e-08
At3g02060 [A] KOG0344 ATP-dependent RNA helicase 57 1e-07
ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase 56 2e-07
YMR190c [L] KOG0351 ATP-dependent DNA helicase 56 2e-07
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 52 3e-06
At1g27880 [L] KOG0351 ATP-dependent DNA helicase 51 8e-06
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 1051 bits (2717), Expect = 0.0
Identities = 538/774 (69%), Positives = 632/774 (81%), Gaps = 12/774 (1%)
Query: 1 MAKKQKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAA 60
MAKK + NT QRK +R+++ + I++L+TK++EY+PKI KA F+DLPIS+ TLKGL+E++
Sbjct: 1 MAKKNRLNTTQRKTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESS 60
Query: 61 FIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIIS 120
FIKLTEIQ +SIP+SL+GHDVL AAKTGSGKTLAFL+PVIEKLYREKWT+ DGLGALIIS
Sbjct: 61 FIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIIS 120
Query: 121 PTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQA 180
PTRELAMQIYEVL+KIG HT+FSAGLVIGGKDV FE ERISRINILIGTPGRILQH+DQA
Sbjct: 121 PTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQA 180
Query: 181 VGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSL 240
VG NTSNLQ+LVLDEADRCLDMGFK+TLDAI++ L SRQTLLFSATQSQS+ DLARLSL
Sbjct: 181 VGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSL 240
Query: 241 TDYKQVGTMEVLNA--NSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSS 298
TDYK VGT +V++ N ++TPE+LQQ YIEVPL DKLDILFSFIKSHLK K+IVFLSS
Sbjct: 241 TDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSS 300
Query: 299 SKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFP 358
SKQVHFVYETFRK+QPGISLMHLHGRQKQ ARTETLDKF+RAQ VCLF+TDVVARGIDFP
Sbjct: 301 SKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFP 360
Query: 359 SVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLN 418
+VDWV+QVDCPEDVDTYIHRVGR AR+GK+GKSLIMLTP+E+E FLKRL + IEP +LN
Sbjct: 361 AVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRLNARKIEPGKLN 420
Query: 419 XXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANS 478
FKDPELKYLGQKAFISYVRSIY+QKDK+VF FD++P E+FA S
Sbjct: 421 IKQSKKKSIKPQLQSLLFKDPELKYLGQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYS 480
Query: 479 LGLPGAPKIKMRGMKSIEKAKELKNTSRQLLTLAKANDEGDVIKENKPEVRTRYDKMFER 538
LGLPGAPKIKM+GMK+IE+AKE KN RQL L+KAN++G+VI++ + RT+YDKMFER
Sbjct: 481 LGLPGAPKIKMKGMKTIEQAKERKNAPRQLAFLSKANEDGEVIEDKSKQPRTKYDKMFER 540
Query: 539 KNQTVLSEHYLNVTKAQAHDDEDEDFIMVKRQDHELNEAELPELLVPTSKRAQKKALSRK 598
KNQT+LSEHYLN+TKAQA +DED+DFI VKR+DHE+NEAELP L +PTS+RAQKKALS+K
Sbjct: 541 KNQTILSEHYLNITKAQAQEDEDDDFISVKRKDHEINEAELPALTLPTSRRAQKKALSKK 600
Query: 599 ATLASNGNPTKVKFDDDGKAHPVYELEDEQDFRQNGNSEKQKEEFLSKEAELMAKVDVED 658
A+LAS GN +K+ FDD+G+AHPVYELEDE++F + G++E QK EFL+KE+ +MA +D D
Sbjct: 601 ASLASKGNASKLIFDDEGEAHPVYELEDEEEFHKRGDAEVQKTEFLTKESAVMADIDNID 660
Query: 659 KQVAXXXXXXXXXXXXXAMRKEMEADMED----SDYEDEPVAYLGTGNLSDDMQSGADTE 714
KQVA AMR+EMEA ME+ + E + VAYLGTGNLSDDM G
Sbjct: 661 KQVAKEKKQEKKRKRLEAMRREMEAAMEEEISGDEEEGKTVAYLGTGNLSDDMSDG---- 716
Query: 715 DDSQDERQPRKKSKYADSSXXXXXXXXXXXXXXXXXXXXPQTLEDLESLTANLI 768
D E +KK++ D S PQTLEDLESLTA LI
Sbjct: 717 DMPDSEGHLKKKARTVDYS--HGHNPSNSVDDDIIEVEEPQTLEDLESLTAKLI 768
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 669 bits (1727), Expect = 0.0
Identities = 349/649 (53%), Positives = 465/649 (70%), Gaps = 15/649 (2%)
Query: 16 RERDSQKIKDLETKVEEYNPKIAK----ANLFQDLPISEQTLKGLKEAAFIKLTEIQRES 71
RE +K K+ E ++EE N +I + F +LP+++ T LK A FI LTEIQ++
Sbjct: 10 REAREKKRKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQC 69
Query: 72 IPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYE 131
IP +LKG D+LGAAKTGSGKTLAF++P+IE LYR+KWT +DGLGAL+ISPTRELA+Q +E
Sbjct: 70 IPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFE 129
Query: 132 VLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLL 191
L KIG+ +FSAGL+IGG + EKER+SR+NIL+ TPGR+LQH+DQAV F+TS LQ+L
Sbjct: 130 TLVKIGRLHSFSAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHIDQAVNFDTSGLQML 189
Query: 192 VLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEV 251
+LDEADR LDMGF+ TLDAI+++LP RQT+LFSATQ++S+ DLARLSL + + E
Sbjct: 190 ILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHE- 248
Query: 252 LNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRK 311
N +S+TP +L Q Y+ VPL +KLDILF FI++HLK K IVFLSS KQV FVYETFR+
Sbjct: 249 ---NDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRR 305
Query: 312 LQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPED 371
++PGISL+HLHG+QKQT RTE KF+ ++HV LF TD+VARG+DFP+VDWVIQ+D PED
Sbjct: 306 MRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPED 365
Query: 372 VDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXX 431
VDTYIHRVGR AR+ + G +L++L P EE FLKRL++K I R+N
Sbjct: 366 VDTYIHRVGRTARYNRSGNALLLLLP-SEEAFLKRLESKKIAVERINVKDGKKTSIRNQL 424
Query: 432 XXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLGLPGAPKIKMRG 491
FKD ++KY+GQKAFISY+RSIY+QKDK+VF DK+P+E FA+SLGLPG PKI
Sbjct: 425 QNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVFQLDKLPVEAFADSLGLPGTPKITFGK 484
Query: 492 MKSIEKAKELKNTSRQLLTLAKANDEGDVIKENKPEVRTRYDKMFERKNQTVLSEHYLNV 551
+K+ ++++ N+S L +++E +V ENK VRT+YD++FERKNQ VL+ H +
Sbjct: 485 LKNHSQSQKDYNSSTSL----DSSEESEVDVENKQNVRTKYDRIFERKNQDVLAAHRQRL 540
Query: 552 TKAQAHDDEDEDFIMVKRQDHELNEAELPELLVPTSKRAQKKALSRKATLASNGNPTKVK 611
+ + D++D DF+ VKR DH+L E E E SKR +K A S+KA L + KV
Sbjct: 541 VEVNS-DEDDGDFLQVKRVDHDLPE-ETGERFNANSKRKEKMASSKKAMLKYKKSADKVY 598
Query: 612 FDDDGKAHPVYELEDEQDFRQNGNSEKQKEEFLSKEAELMAKVDVEDKQ 660
FDD+G A P Y + E F++ G+ L++E + + K D+ DK+
Sbjct: 599 FDDEGNAIPFYAMNTEDTFQKAGDPAALIASHLAEERKALEKADITDKE 647
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 490 bits (1261), Expect = e-138
Identities = 293/741 (39%), Positives = 441/741 (58%), Gaps = 35/741 (4%)
Query: 3 KKQKHNTQQRKLIRER--------DSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLK 54
KK H ++K +R++ + + I L E+ N + + F D P+S++TLK
Sbjct: 25 KKHSHRQNKKKQLRKQLKKPEWQVERESISRLMQNYEKIN--VNEITRFSDFPLSKKTLK 82
Query: 55 GLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGL 114
GL+EA + +TEIQ+++I L+L+G DVLGAAKTGSGKTLAFL+PV+E LYR +WT DGL
Sbjct: 83 GLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL 142
Query: 115 GALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRIL 174
G LIISPTRELA Q +EVL K+GK+ FSAGL+IGGKD+ E ERI+ INIL+ TPGR+L
Sbjct: 143 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLL 202
Query: 175 QHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDD 234
QHMD+ V F+ ++LQ+LVLDEADR LDMGF T++A+I NLP RQTLLFSATQ++S+ D
Sbjct: 203 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKD 262
Query: 235 LARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIV 294
LARLSL + + V E + +TP +L+Q+YI L K+ +L+SF++SHLK K IV
Sbjct: 263 LARLSLKNPEYVWVHE----KAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIV 318
Query: 295 FLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARG 354
F SS K+V ++Y F +L+PG+S++ LHGRQ+Q R E ++F R + LF+TD+ ARG
Sbjct: 319 FFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARG 378
Query: 355 IDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEP 414
+DFP+V+WV+Q DCPED +TYIHR GR AR+ ++G++L++L P E+ +++L K +
Sbjct: 379 LDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLP-SEKAMVQQLLQKKVPV 437
Query: 415 SRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQ 474
+ +D +LK Q+ F+SYVRS+Y+ KDKEVF K+P+ +
Sbjct: 438 KEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPE 497
Query: 475 FANSLGLPGAPKIKMRGMKSIEKAKELKNTSRQLLTLAKA----NDEGDVIKENKPEVRT 530
+A SLGL AP+++ + KEL + + +A NDE + + E +
Sbjct: 498 YALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTNDEVEEFRAYFNEKMS 557
Query: 531 RYDKMFERKNQTVLSEHYL-NVTKAQAHDDEDEDFIMVKRQDHELNEAELPELLVPTSKR 589
K +R T EH N T + ++E++D ++ + + ++ P L P +
Sbjct: 558 ILQKGGKRLEGT---EHRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSL--PNTSE 612
Query: 590 AQKKALSRKATLASNGNPTKVKFDDDGKAHPVY--ELEDEQDFRQNGNSEKQKEEFLSKE 647
AQK L + F K H V+ +L+DE+ ++ S+ ++ ++K
Sbjct: 613 AQKIKEVPTQFLDRDEEEEDADF-LKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKV 671
Query: 648 AELMAKVDVEDKQVAXXXXXXXXXXXXXAMRKEMEADMEDSDYEDEPVAYLGTGNLSDDM 707
AE KV + +V + ++ ++D++ +D+ TG ++
Sbjct: 672 AE-AKKVMKRNFKVNKKITFTDEGELVQQWPQMQKSAIKDAEEDDD------TGGINLHK 724
Query: 708 QSGADTEDDSQDERQPRKKSK 728
E+D D+ + RKK K
Sbjct: 725 AKERLQEEDKFDKEEYRKKIK 745
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 477 bits (1228), Expect = e-134
Identities = 307/806 (38%), Positives = 435/806 (53%), Gaps = 112/806 (13%)
Query: 22 KIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDV 81
+I+DL+TK E + K F P+S++T K L E+ F+ T++QR+SI +L+G DV
Sbjct: 55 EIQDLKTKYAEIDATAIKK--FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDV 112
Query: 82 LGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTT 141
LGAA TGSGKTLAFLIPV+E L+ KW+ DG+GA+IISPTRELA QI+E L K+GKH
Sbjct: 113 LGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHD 172
Query: 142 FSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD 201
FSAGL+IGGK++ FE+ R+ + NILI TPGR+LQHMD+ FNTS +++LVLDEADRCLD
Sbjct: 173 FSAGLIIGGKNLKFERTRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLD 232
Query: 202 MGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVG-----TMEVLNANS 256
MGF++TL++II N P RQTLLFSATQ+ ++ DLARL+L D VG E +A++
Sbjct: 233 MGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSAST 292
Query: 257 SS-------ATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETF 309
A PE LQQSY+ + L DK+ +L+SFIK+HLK K+IVF++S KQ ++YE F
Sbjct: 293 KKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIF 352
Query: 310 RKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP 369
KL+PG L+ L+G Q R + F R HV +FSTDV +RG+DFP+V+WV+Q+DCP
Sbjct: 353 CKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCP 412
Query: 370 EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK-NIEPSRLNXXXXXXXXXX 428
EDV YIHR GR+AR G+ L++LTP EEE + LK + NI+ +
Sbjct: 413 EDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSPR 472
Query: 429 XXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLGLPGAPKIK 488
+ PEL+ Q+AF+SY++S+++ ++K +F+ + L+ FA SLGL P++
Sbjct: 473 VKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVP 532
Query: 489 MRGMKSIEKAKELKNTSRQLLTLAKANDEGDVIKENKPEVRTRYDKMFERKNQTVLSEHY 548
K + + K+L+ Q GD +EN
Sbjct: 533 FL-EKFLWRQKQLQQQKEQ---------GGDEDEEN------------------------ 558
Query: 549 LNVTKAQAHDDEDEDFIMVKRQDHEL--------------NEAELPELLVPTSKRAQKKA 594
+DEDFI VKR+DH++ NEAE P ++ K K +
Sbjct: 559 ----------SDDEDFIKVKRKDHDVEGEPVKLDEEDDTENEAEAPLVVPKREKLVTKAS 608
Query: 595 LSRKATLASNGNPTKVKFDDDGKA-----HPVYELEDEQDFRQNGNSEKQKEEFLSKEAE 649
L++KA + +K+KFDD+G+ + L Q + + LSK
Sbjct: 609 LAKKALKKNLQVNSKLKFDDEGETMADDRSQMKALSARQRTVNQDDDDGGINLVLSK--A 666
Query: 650 LMAKVDVEDKQVAXXXXXXXXXXXXXAMRKEME----ADMEDSDYEDEPV---------- 695
L+ + D DKQ +RK+ E +D E+ +D+
Sbjct: 667 LLTEEDQYDKQRFRELVKKRHKLQREKLRKKAEEAKGSDDEEEQQDDDNADDAGSESDHS 726
Query: 696 -----------AYLGTGNLSDDMQSGADTEDDSQDERQPRKKSKYADSSXXXXXXXXXXX 744
Y N SD +S +++ D S DE K DS
Sbjct: 727 VDLSWLPDPDKVYKNKPNASDRNESKSESSDASDDE-------KADDSDGDDDDVSDDEP 779
Query: 745 XXXXXXXXXPQTLEDLESLTANLIGS 770
TL D E++ A+L+GS
Sbjct: 780 AYKKSKLTNKMTLMDTEAIAASLLGS 805
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 458 bits (1178), Expect = e-128
Identities = 275/693 (39%), Positives = 407/693 (58%), Gaps = 47/693 (6%)
Query: 18 RDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLK 77
+DS+ K + K + A F LPIS++T +GLK+A ++ +T++Q +IP +L
Sbjct: 48 KDSKIGKSEDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALC 107
Query: 78 GHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIG 137
G D+LGAA+TGSGKTLAF+IP++EKL+RE+W+ DG+G +IISPTRELA Q + VL+K+G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
Query: 138 KHTTFSAGLVIGGKD-VTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEA 196
K FSAGL+IGG++ V EKER+ +NIL+ PGR+LQHMD+ F LQ+L+LDEA
Sbjct: 168 KFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEA 227
Query: 197 DRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANS 256
DR LD FK LD II+ LP RQTLLFSATQ++ + DLARLSL D + + ++A +
Sbjct: 228 DRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYIS----VHAEA 283
Query: 257 SSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGI 316
+ATP SL Q+ + VP+ KLD+L+SFIK+HL S+++VFLS+ KQV FV+E F KL+PGI
Sbjct: 284 VTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGI 343
Query: 317 SLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDF-PSVDWVIQVDCPEDVDTY 375
L LHG+ Q R +F Q V LF TDV+ARG+DF +VDWV+QVDCPEDV +Y
Sbjct: 344 PLKSLHGKMSQEKRMGVYSQFIERQSV-LFCTDVLARGLDFDKAVDWVVQVDCPEDVASY 402
Query: 376 IHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXX 435
IHRVGR ARF +GKSL+ LTP EE+ +++L+ + +
Sbjct: 403 IHRVGRTARFYTQGKSLLFLTPSEEK-MIEKLQEAKVPIKLIKANNQKLQEVSRLLAALL 461
Query: 436 FKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLGLPGAPKIKMRGMKSI 495
K P+L+ + Q+AFI+Y+RSI+ ++DKE+F K+ +E F+ SLGLP P+I+ +K+
Sbjct: 462 VKYPDLQGVAQRAFITYLRSIHKRRDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTK 521
Query: 496 EKAKELKNTSRQLLTLAKANDEGDVIKENKPEVRTRYDKMFERKNQTVLSEHYLNVTKAQ 555
+K + + ++ EN E Y+ K +
Sbjct: 522 KKGVYESSIAMEI--------------ENAQE----YEAPLVVKKDLL------------ 551
Query: 556 AHDDEDEDFIMVKRQDHELNE--AELPELLVPTSKRAQKKALSRKATLASNGNPTKVKFD 613
D E+EDF + R++ ++ E + E+L+P ++ + K L K L ++V D
Sbjct: 552 GEDLEEEDFALKPRKEGKVVEKSTKEEEVLIPGNRVLKNKKL--KINL-HRPFGSRVVLD 608
Query: 614 DDGKAHPVYELEDEQDFRQNGNSEKQKEEFLSKEAELMAKVDVEDKQVAXXXXXXXXXXX 673
++G + + + E++ ++ K M K D+EDK+V
Sbjct: 609 EEGNSLAPLASVAAEAGTEVALDEERMNDYYKKVGAEMRKADIEDKKVDKERRREKRMKQ 668
Query: 674 XXAMRKEMEADMEDSDYEDEPVAYLGTGNLSDD 706
++ D E+ + ED G+G+ D+
Sbjct: 669 KIKRKRGAMEDEEEEEEEDHD----GSGSSDDE 697
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 442 bits (1136), Expect = e-123
Identities = 243/535 (45%), Positives = 341/535 (63%), Gaps = 14/535 (2%)
Query: 2 AKKQKHNTQQRKL-IRERDSQKIKDLETKVEEYNPKIAKANL-FQDLPISEQTLKGLKEA 59
A K+K ++RK ++ ++ + ++E K +E K ++ L F+D P+S +TL+GLK+
Sbjct: 35 ALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLKKSSRTFLRFEDFPLSWRTLEGLKDN 94
Query: 60 AFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALII 119
+ K TEIQR++I SL G DV+GAAKTGSGKTLA +IPV+E L+R KW+ GLGALII
Sbjct: 95 DYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALII 154
Query: 120 SPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQ 179
SPTRELA+Q + ++ +G H FS GLVIGG DV FE+ RIS INI++ TPGR+LQHMD+
Sbjct: 155 SPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDE 214
Query: 180 AVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLS 239
+ +LQ+LVLDEADR LDMGF + L++IINNLPA RQTLLFSATQ++++ DL R+
Sbjct: 215 NAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLCRVC 274
Query: 240 LTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSS 299
D V E N+S+ATP++L+QSY+ V K++ L+SFI++H K K +VF+SS
Sbjct: 275 TNDPVFVSVHE----NASAATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLVFVSSC 330
Query: 300 KQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPS 359
KQ F+ E F +L+PG+ +M L G Q R ET KF ++ L +TDV +RG+DF
Sbjct: 331 KQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEH 390
Query: 360 VDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNX 419
+DWVIQVDCP +D YIHRVGR+AR G SL+M++P +EE + +L+ +I L
Sbjct: 391 IDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKLEKHSIPIEELKI 450
Query: 420 XXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSL 479
+ ELK QK+ ++Y+RSIY KDK+VF + I A+S
Sbjct: 451 HPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKKVFDVEAIDAAALADSF 510
Query: 480 GLPGAPKIKM---RGMKSIEK--AKELKNTSRQLLTLAK---ANDEGDVIKENKP 526
GL P+++ + KS EK KE+K + + K D+ D+ KP
Sbjct: 511 GLVSVPRVRFLNKKAKKSGEKLMEKEVKEEEEEASLVGKFAIDEDDEDIFTVKKP 565
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 326 bits (835), Expect = 9e-89
Identities = 202/542 (37%), Positives = 297/542 (54%), Gaps = 45/542 (8%)
Query: 5 QKHNTQQRKLIRERDSQKIKDLETKVEEYNPK----------IAKANLFQDLP------- 47
+K T+ + E ++ K+ E VE+ + + F+D
Sbjct: 126 KKAKTENKGKSEEESAETTKETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNL 185
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREK 107
++E TLK +KE F +TEIQ +SI L+G D+L AAKTGSGKTLAFLIP +E + + +
Sbjct: 186 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 245
Query: 108 WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INIL 166
+ +G G LI+SPTRELAMQ + VL ++ H + GL++GG + + E +++ INI+
Sbjct: 246 FMTRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINII 305
Query: 167 IGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSA 226
+ TPGR+L HM GF NLQ LV+DEADR LD+GF+ L II LP RQT+LFSA
Sbjct: 306 VATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 365
Query: 227 TQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKS 286
TQ++ ++DLAR+SL K+ ++ + ++AT + L+Q Y+ P + +LF+F+K
Sbjct: 366 TQTRKVEDLARISL---KKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK 422
Query: 287 HLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLF 346
+ K KL+VF SS V + YE + + ++ +HG+QKQ RT T +F A L
Sbjct: 423 NRKKKLMVFFSSCMSVKYHYELLNYID--LPVLAIHGKQKQNKRTTTFFQFCNADSGTLL 480
Query: 347 STDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAAR-FGKEGKSLIMLTPEEEEGFLK 405
TDV ARG+D P VDW++Q D P+D YIHRVGR AR G +L++L P EE GFL+
Sbjct: 481 CTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRP-EELGFLR 539
Query: 406 RLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVF 465
LK + S + K+ L Q+A+ SY+R+ K++F
Sbjct: 540 YLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIF 599
Query: 466 HFDKIPLEQFANSLGLPGAP-----------KIKMRG---------MKSIEKAKELKNTS 505
+ + + L Q A S G P K K RG K +EK+K K+ S
Sbjct: 600 NVNNLNLPQVALSFGFKVPPFVDLNVNSNEGKQKKRGGGGGFGYQKTKKVEKSKIFKHIS 659
Query: 506 RQ 507
++
Sbjct: 660 KK 661
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 320 bits (820), Expect = 5e-87
Identities = 188/451 (41%), Positives = 272/451 (59%), Gaps = 11/451 (2%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F DL +SE K +KE F +TEIQ+ SIP L G DVLGAAKTGSGKTLAFLIP IE
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
LY K+ +G G +IISPTRELA+QI+ V ++ K+ + G+VIGG + E +++ +
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 210
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA-SRQ 220
+N+L+ TPGR+L H+ GF NL+ LV+DEADR L++GF+ + I+ LP+ +RQ
Sbjct: 211 GVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ 270
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEV-LNANSSSATPESLQQSYIEVPLPDKLDI 279
TLLFSATQ+ ++DLAR+SL + G + V +++ ++T E L+Q Y+ V + +
Sbjct: 271 TLLFSATQTTKVEDLARISL----KPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLL 326
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
LFSF+K +LK K+IVF+SS V ++ E + + ++ LHG+QKQ RT T +F
Sbjct: 327 LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYID--LPVLDLHGKQKQQRRTNTFFEFCN 384
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGK-EGKSLIMLTPE 398
A+ L T+V ARG+D P+VDW++Q D P+D YIHRVGR AR K GKSL+ L P
Sbjct: 385 AEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAP- 443
Query: 399 EEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYI 458
E GFL+ LKT + + K+ L+ + + SY+++
Sbjct: 444 SELGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYAS 503
Query: 459 QKDKEVFHFDKIPLEQFANSLGLPGAPKIKM 489
K +F +K+ L + A S G P + +
Sbjct: 504 YSLKSIFDINKLDLAKVAKSFGFAHPPNVNI 534
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 318 bits (814), Expect = 3e-86
Identities = 179/445 (40%), Positives = 268/445 (60%), Gaps = 8/445 (1%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREK 107
+SE TL+ +KE F ++TEIQ +S+ LKG D++GAA+TGSGKTLAFLIP +E + + +
Sbjct: 177 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR 236
Query: 108 WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INIL 166
+ +G G +IISPTREL+MQ + VL ++ H + GLV+GG + E E++ + INIL
Sbjct: 237 FMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINIL 296
Query: 167 IGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSA 226
+ TPGR+L H+ + F NLQ L++DE DR L++GF+ L IIN LP RQT+LFSA
Sbjct: 297 VATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSA 356
Query: 227 TQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKS 286
TQ+ ++ L++L+L K ++ N +AT + L+Q YI P +L +LF+F+K
Sbjct: 357 TQTARIEALSKLAL---KSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKK 413
Query: 287 HLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLF 346
+ K K++VF SS V + +E F + + + +HG+QKQT RT T +F A+ L
Sbjct: 414 NRKKKVMVFFSSCMSVKYHHELFNYID--LPVTSIHGKQKQTKRTTTFFQFCNAESGILL 471
Query: 347 STDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAAR-FGKEGKSLIMLTPEEEEGFLK 405
TDV ARG+D P VDW++Q D P+D YIHRVGR AR G G +L+++ P EE GFL+
Sbjct: 472 CTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRP-EELGFLR 530
Query: 406 RLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVF 465
LK + + K+ L ++AF SYVR+ + K++F
Sbjct: 531 YLKAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIF 590
Query: 466 HFDKIPLEQFANSLGLPGAPKIKMR 490
+ + + L+ A S G P + ++
Sbjct: 591 NVNTLDLQAVAKSFGFLVPPVVDLK 615
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 315 bits (808), Expect = 1e-85
Identities = 191/491 (38%), Positives = 284/491 (56%), Gaps = 15/491 (3%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFI 62
KKQ+ +T+ + E + + K+ E K+EE + I F+ L +S+ T K +KE F
Sbjct: 121 KKQRKDTEAKS---EEEEVEDKEEEKKLEETS--IMTNKTFESLSLSDNTYKSIKEMGFA 175
Query: 63 KLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPT 122
++T+IQ ++IP + G DVLGAA+TGSGKTLAFLIP +E LYR K+T +G G L+I PT
Sbjct: 176 RMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPT 235
Query: 123 RELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAV 181
RELA+Q Y V ++ K+ + + G VIGG+ E E +++ +N+L+ TPGR+L H++
Sbjct: 236 RELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTN 295
Query: 182 GFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT 241
GF NL+ LV+DEADR L+ F+ L I+N LP +RQT LFSATQS ++DLAR+SLT
Sbjct: 296 GFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLT 355
Query: 242 DYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHL-KSKLIVFLSSSK 300
+ E T E L+Q Y VP +L L +F+K K K++VF S+ K
Sbjct: 356 SPVYIDVDE----GRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCK 411
Query: 301 QVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSV 360
F E FR ++ + + G Q RT T +F +A+ L T+V ARG+DFP V
Sbjct: 412 STKFHAELFRYIK--FDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHV 469
Query: 361 DWVIQVDCPEDVDTYIHRVGRAAR-FGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNX 419
DW++Q D P++ YIHRVGR AR G +GK+L++LTP+E + F++ LK I
Sbjct: 470 DWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELK-FIQYLKAAKIPVEEHEF 528
Query: 420 XXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSL 479
++ LK ++A+ +Y+ K+VF+ ++ L + A S
Sbjct: 529 EEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDSHSMKDVFNVHQLNLTEVATSF 588
Query: 480 GLPGAPKIKMR 490
G PK+ ++
Sbjct: 589 GFSDPPKVALK 599
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 309 bits (792), Expect = 9e-84
Identities = 184/469 (39%), Positives = 276/469 (58%), Gaps = 15/469 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F++L +S+ TLK +++ F +T +Q +IP L G DVLGAAKTGSGKTLAFLIP IE
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L+ K+ +G G ++I+PTRELA+QI+ V ++ + + + G+VIGG + E E++ +
Sbjct: 104 LHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMK 163
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP-ASRQ 220
+N+LI TPGR+L H+ GF NL+ L++DEADR L++GF+ + II LP RQ
Sbjct: 164 GVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQ 223
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEV-LNANSSSATPESLQQSYIEVPLPDKLDI 279
++LFSATQ+ ++DLAR+SL + G + + + + ++T + L+Q Y+ + +
Sbjct: 224 SMLFSATQTTKVEDLARISL----RPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLL 279
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
LFSF+K + K K+IVFLSS V + E + + ++ LHG+QKQ RT T +F
Sbjct: 280 LFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID--LPVLELHGKQKQQKRTNTFFEFCN 337
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGK-EGKSLIMLTPE 398
A+ L TDV ARG+D P+VDW+IQ D P+D YIHRVGR AR K +GKSL+ LTP
Sbjct: 338 AERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTP- 396
Query: 399 EEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYI 458
E GFL+ LK + + + L + + SY+++
Sbjct: 397 NELGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYAS 456
Query: 459 QKDKEVFHFDKIPLEQFANSLGLPGAPKIKMRGMKSIEKAKELKNTSRQ 507
K V+ DK+ L + A S G P PK+ + +I + + NT R+
Sbjct: 457 HSLKTVYQIDKLDLAKVAKSYGFPVPPKVNI----TIGASGKTPNTKRR 501
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 308 bits (790), Expect = 2e-83
Identities = 191/509 (37%), Positives = 283/509 (55%), Gaps = 20/509 (3%)
Query: 5 QKHNTQQRKLIR---ERDSQKIKDLETKVEEYNPKIAKANL-----FQDLPISEQTLKGL 56
QK + ++ K +R E + +K++ +E +E N I + F L +SEQT +
Sbjct: 45 QKKSEKKVKKVRGKIEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQTSIAI 104
Query: 57 KEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGA 116
KE F +T+IQ SI L+G DVLGAA+TGSGKTLAFLIP +E L++E+++ +G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGV 164
Query: 117 LIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-SRINILIGTPGRILQ 175
++I PTRELA+Q V ++ KH + + +VIGG + E +RI S N++I TPGR+L
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Query: 176 HMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDL 235
H+ F +L+ LV+DEADR L+ F+ ++ I+ LP +RQT LFSATQ+ + DL
Sbjct: 225 HLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDL 284
Query: 236 ARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVF 295
AR+SLT V ++ T E L+Q Y VP +L +L SF+K +L K++VF
Sbjct: 285 ARVSLTSPVHVD----VDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVF 340
Query: 296 LSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGI 355
S+ K V F E + +S +HG Q RT+T F +A+ L TDV ARG+
Sbjct: 341 FSTCKSVQFHTEIMKISDVDVS--DIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGL 398
Query: 356 DFPSVDWVIQVDCPEDVDTYIHRVGRAAR-FGKEGKSLIMLTPEEEEGFLKRLKTKNIEP 414
D PSVDW+IQ D P+ YIHRVGR AR G +GK+L++L PEE + F++ LK +
Sbjct: 399 DIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ-FIRYLKAAKVPV 457
Query: 415 SRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQ 474
L KD L L + A+ +Y+ + K++F+ ++ L
Sbjct: 458 KELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDIFNVHRLDLLA 517
Query: 475 FANSLGLPGAPKIKMR---GMKSIEKAKE 500
A S PK+ + G + KA++
Sbjct: 518 VAESFCFSSPPKVNLNIESGAGKVRKARK 546
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 303 bits (777), Expect = 5e-82
Identities = 179/482 (37%), Positives = 278/482 (57%), Gaps = 12/482 (2%)
Query: 11 QRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRE 70
+ ++ E+ Q + ETKV E+ K A+L + ++ LK ++ F +TEIQ +
Sbjct: 40 EEEVEEEQKHQTEESSETKVSEFLTKTTFASL--EGKVNANLLKAVQGLGFTTMTEIQAK 97
Query: 71 SIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIY 130
SI L+G DVL +AKTGSGKTLAFL+P IE L++ W +G G +I+SPTREL+MQ Y
Sbjct: 98 SIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTY 157
Query: 131 EVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQ 189
VLS++ + + + GLV+GG + + EK+++++ ++IL+ TPGR+L H+ F N++
Sbjct: 158 GVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMK 217
Query: 190 LLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSL-TDYKQVGT 248
L++DEADR LD+GF+ + ++ +LP RQ++LFSAT S +D+L +L+L ++ +V
Sbjct: 218 CLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSV 277
Query: 249 MEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYET 308
E + AT E LQQ YI P +L +LF+F+K + K++VF SS V F +E
Sbjct: 278 HE----KAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHEL 333
Query: 309 FRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDC 368
+ I M +HG+QKQ RT T +F +A+ L TDV ARG+D P+VDW++Q D
Sbjct: 334 LNYID--IPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDP 391
Query: 369 PEDVDTYIHRVGRAAR-FGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNXXXXXXXXX 427
++ YIHRVGR AR GK+L++L P EE GFL+ LK + +
Sbjct: 392 TDEPREYIHRVGRTARGTNGSGKALLVLRP-EELGFLRYLKAAKVTLNEFEFSWSKVANI 450
Query: 428 XXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLGLPGAPKI 487
K+ L ++A+ Y+R+ K++F + L + S G P +
Sbjct: 451 QSQLENLISKNYYLNKSAKEAYKCYLRAYDSHSLKDIFDVTNMDLTAVSKSFGFSVPPFV 510
Query: 488 KM 489
+
Sbjct: 511 DL 512
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 293 bits (749), Expect = 9e-79
Identities = 148/359 (41%), Positives = 234/359 (64%), Gaps = 8/359 (2%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+DL I ++ KGL+E F+ + E+Q++ IP++L+GHD++G+++TG+GKTLAFL+P +++
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L W DGLG L+I+PTRELA+QI++VLS+I K+T S GL++GG + E ++++
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKVNQ 125
Query: 163 INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTL 222
+NIL+ TPGR+LQH+ + +T+N+Q+L+LDEAD+ ++MGFK L+ I+ +P +QTL
Sbjct: 126 MNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQKKQTL 185
Query: 223 LFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFS 282
LFSAT S + +L +++ P L+Q + + DK++ L +
Sbjct: 186 LFSATPKASTARILKLE--------DPRIISIYKEEGFPSQLRQYFYMMRTGDKINYLHT 237
Query: 283 FIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQH 342
FI S+ + K IVF S+ K+V F F +L+ + L G Q R + +F + ++
Sbjct: 238 FIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKN 297
Query: 343 VCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
LF TD+ +RG+DFP VD VIQ DCP +V+TY+HRVGR AR + G+S + L EE+
Sbjct: 298 GILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEK 356
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 238 bits (608), Expect = 2e-62
Identities = 157/469 (33%), Positives = 247/469 (52%), Gaps = 19/469 (4%)
Query: 43 FQDL--PISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI 100
F DL P+S ++ L ++ F T +Q +IPL DV A TGSGKTLAF++P++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 101 EKLYREKW--TDMDGLGALIISPTRELAMQIYEVLSK-IGKHTTFSAGLVIGGKDVTFEK 157
E L R + +IISPTREL+ QIY V + ++ L++GG++V +
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 158 ERISR--INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNL 215
+ I N+LIGTPGR+ M++ + NL++L+LDEADR L+MGF+R ++ II+ L
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
Query: 216 PASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSS-----SATPESLQQSYIE 270
P R+T LFSATQ++ +++LA+ L + +V + SS S TP L Y+E
Sbjct: 196 PKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYME 255
Query: 271 VPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQP--GISLMHLHGRQKQT 328
K L + + KLIVF + V + K+ ISL+ +HG KQ
Sbjct: 256 CEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQN 315
Query: 329 ARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKE 388
AR + L F++A L TDV ARG+D P +D+V+Q D P+D + + HR GR AR G++
Sbjct: 316 ARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQ 375
Query: 389 GKSLIMLTPEEEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKA 448
G++++ L P +EE +++ ++ + + P KD + G KA
Sbjct: 376 GRAIVFLLP-KEEAYVEFMRIRRV-PLEERKCSEDASDVIPIIRSAAMKDRAVMEKGLKA 433
Query: 449 FISYVRSIYIQKDKEVFHFDKIPLEQFANSLG---LPGAPKIKMRGMKS 494
F+S+VR+ +F + + + + A G LP ++K + S
Sbjct: 434 FVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQHRLSS 482
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 238 bits (607), Expect = 3e-62
Identities = 182/622 (29%), Positives = 301/622 (48%), Gaps = 47/622 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
FQ + I + + F K+T +Q +IPL LK D++ A TGSGKTLA+L+P +K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFS--------AGLVIGGKDVT 154
+ R TD GLGALI++PTRELA QI+ V ++ + S A + IGGK
Sbjct: 63 VTRRD-TDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 155 ---FEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAI 211
R +++IGTPGR+ + + ++ +L++L+LDEAD +DMGF+RTL +I
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILILDEADTLIDMGFQRTLQSI 178
Query: 212 INNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV 271
I+ LP R+T LFSAT + ++ +++ ++ V + + TP SL + +
Sbjct: 179 ISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVI 238
Query: 272 PLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
P K+ + + + K IVF SS V + F + ++ LHG+Q Q+ R+
Sbjct: 239 PPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRS 298
Query: 332 ETLDKFSRA-QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGK 390
+KF ++ + LF+TD+ +RG+D P+VD+V+Q+D P D ++ HR GRA R G+ G
Sbjct: 299 RNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGV 358
Query: 391 SLIMLTPEEEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXF-----KDPELKYLG 445
++++L EE + + L+ + + +R++ KD +L G
Sbjct: 359 AIVLLNDGREEEYEELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKIVSKDRDLYDKG 418
Query: 446 QKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLGLPGAPKIKMRGMKSIEKAKEL-KNT 504
+AF+S+VR+ +F + L Q A + L P KM +K E ++ + K
Sbjct: 419 LRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLP--KMPELKDTEISENIFKKF 476
Query: 505 SRQLLTLAKANDEGDVIKENKPEVRTRYDKMFERKNQTVLSEHYLNVTKAQAHDDEDEDF 564
T+ + + + + EV K R + K +A + E
Sbjct: 477 DIDYATIPYRDQVREQARRRRLEVEKTEPKKLARPAK----------IKNEAWSKQKE-- 524
Query: 565 IMVKRQDHELNEAELPELLVPTSKRAQKKALSR--KATLASNGNPTKVKFDD--DGKAHP 620
+ KR E L +AQK S K + S + + DD D ++
Sbjct: 525 VKEKRNTRREKRKSKKEFL-----KAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDA 579
Query: 621 VYELEDEQDFRQNGNSEKQKEE 642
+ EL E+D+RQ S+K+K +
Sbjct: 580 LSEL--EEDYRQLKKSKKRKNQ 599
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 237 bits (604), Expect = 6e-62
Identities = 142/406 (34%), Positives = 228/406 (55%), Gaps = 21/406 (5%)
Query: 26 LETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAA 85
L T++ + + F P+S TLKG+++A F +T +Q ++PL L+G D+L A
Sbjct: 65 LVTQIAKTSDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKA 124
Query: 86 KTGSGKTLAFLIPVIEKLYREKWTDMDG----LGALIISPTRELAMQIYEVLSKIGK-HT 140
KTG+GKT+AFL+P IE + + D + L++ PTRELA Q + + K H
Sbjct: 125 KTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHP 184
Query: 141 TFSAGLVIGGKDVTFEKERISR--INILIGTPGRILQHMDQAVGFNTS--NLQLLVLDEA 196
+ +VIGG + E+ R+ + IL+ TPGR+ H+D GF T +++LVLDEA
Sbjct: 185 SIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEA 244
Query: 197 DRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT-DYKQVGTMEVLNAN 255
D LDMGF+R ++ II +P RQT LFSAT S + + ++L D++ V ++
Sbjct: 245 DHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQ----E 300
Query: 256 SSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS----KLIVFLSSSKQVHFVYETFRK 311
+ T + + Q Y+ L +L+ +K H+ K+I+F +++ V + K
Sbjct: 301 GAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGK 360
Query: 312 LQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPED 371
L +++ +H R+ Q+ RT D+F +++ + L ++DV ARG+D+P V V+Q+ P D
Sbjct: 361 LS--LNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSD 418
Query: 372 VDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRL 417
+ YIHR+GR R GKEG+ +++L P EE FL +K I S L
Sbjct: 419 REQYIHRLGRTGRKGKEGEGVLLLAPWEEY-FLSSVKDLPITKSSL 463
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 231 bits (588), Expect = 4e-60
Identities = 148/448 (33%), Positives = 234/448 (52%), Gaps = 13/448 (2%)
Query: 47 PISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE 106
P+SE ++ L + F T +Q E+IP DV+ A TGSGKTLAFL+P IE + R
Sbjct: 22 PLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 81
Query: 107 KW--TDMDGLGALIISPTRELAMQIYEVLSK-IGKHTTFSAGLVIGGKDVTFEKERISR- 162
+ +IISPTREL+ QI++V + ++ L++GG++V + +
Sbjct: 82 NSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEE 141
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
N+LIGTPGR+ M + + NL++L+LDEADR LDMGF++ ++ II+ LP R+T
Sbjct: 142 GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRT 201
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
LFSATQ+Q++ DLA+ L + +V + A S S T L Y++ K L
Sbjct: 202 GLFSATQTQAVADLAKAGLRNAMEV----ISGAESKSKTSSGLYCEYLKCEADQKSSQLV 257
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQP--GISLMHLHGRQKQTARTETLDKFSR 339
+ + KL+VF + V + K+ IS HG+ Q R L F+
Sbjct: 258 HLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTE 317
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
A L TDV ARG+D P +D+V+Q D P+D D +IHRVGR AR ++G++++ L P+E
Sbjct: 318 ASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKE 377
Query: 400 EEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQ 459
+ +++ ++ + + P + KD + G +AF+S+VR+
Sbjct: 378 TD-YVEFMRIRRV-PLQERKCSENASDVIPIIRSLAIKDRAVLEKGLQAFVSFVRAYKEH 435
Query: 460 KDKEVFHFDKIPLEQFANSLGLPGAPKI 487
+F + + + + A G+ P I
Sbjct: 436 HCSYIFSWKGLEIGKLAMGYGILSFPYI 463
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 230 bits (587), Expect = 5e-60
Identities = 143/404 (35%), Positives = 219/404 (53%), Gaps = 16/404 (3%)
Query: 4 KQKHNTQQRKLIRERDSQKIKDLETKV-EEYNPKIAKANLFQDLPISEQTLKGLKEAAFI 62
+ K N+ K I +S K E + N + K F++L + ++ + ++ F
Sbjct: 10 EDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKT--FKELGVIDELCEACEKLGFK 67
Query: 63 KLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPT 122
T IQ+E+IP+ L DV+G A+TGSGKT AF +PVI++L W + A++++PT
Sbjct: 68 TPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQEL----WNNPSPFFAVVLAPT 123
Query: 123 RELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRI-NILIGTPGRILQHMDQAV 181
RELA QI E IG + +++GG D+ + +S+ ++L+ TPGR++ H++
Sbjct: 124 RELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTK 183
Query: 182 GFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT 241
GF+ NL+ L++DEADR LDM F +D I+ +P R+TLLFSAT + ++ L R SL
Sbjct: 184 GFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLH 243
Query: 242 DYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQ 301
+V +S +T ++L Q Y+ P K L + + +I+F +
Sbjct: 244 QPVRVAV------SSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVND 297
Query: 302 VHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVD 361
+ R L G S + LHG+ Q+ R L+KF L +TDV ARG+D P VD
Sbjct: 298 TQRLAILLRTL--GFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVD 355
Query: 362 WVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK 405
VI D P D YIHRVGR AR G+ GKS+ ++T + E FL+
Sbjct: 356 VVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLR 399
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 226 bits (577), Expect = 8e-59
Identities = 134/391 (34%), Positives = 216/391 (54%), Gaps = 13/391 (3%)
Query: 16 RERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLS 75
R+++ K K + ++E+ + + K F +L +S+ + ++K ++IQ+ ++P +
Sbjct: 19 RKKNLTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHA 78
Query: 76 LKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSK 135
L+G DV+G A+TGSGKT AF IPV++ L L+++PTRELA QI +
Sbjct: 79 LQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP----QAFFCLVLTPTRELAFQIGQQFEA 134
Query: 136 IGKHTTFSAGLVIGGKDVTFEKERISRI-NILIGTPGRILQHMDQAVGFNTSNLQLLVLD 194
+G A +++GG D+ + ++R +I++ TPGR++ H++ GFN L+ L++D
Sbjct: 135 LGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMD 194
Query: 195 EADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNA 254
EADR L+M F+ LD I+ +P R+T LFSAT ++ + L R SL D +V +
Sbjct: 195 EADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARV------SV 248
Query: 255 NSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQP 314
+S T ++L+Q YI VP K L + H + IVF ++ + R+L
Sbjct: 249 SSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQL-- 306
Query: 315 GISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDT 374
G+ + LHG+ Q R +L+KF L TDV ARG+D P VD VI D P
Sbjct: 307 GMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKD 366
Query: 375 YIHRVGRAARFGKEGKSLIMLTPEEEEGFLK 405
Y+HRVGR AR G+ G ++ ++T + E + K
Sbjct: 367 YVHRVGRTARAGRSGIAITVVTQYDVEAYQK 397
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 226 bits (576), Expect = 1e-58
Identities = 140/403 (34%), Positives = 228/403 (55%), Gaps = 21/403 (5%)
Query: 29 KVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTG 88
K N F P+S +LK +K+A + +T +Q ++P+ LKG DVL AKTG
Sbjct: 42 KTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTG 101
Query: 89 SGKTLAFLIPVIEKLYREKWTDMDG----LGALIISPTRELAMQIYEVLSKIGK-HTTFS 143
+GKT+AFL+P IE + + T D + AL+I PTRELA Q + + K H +
Sbjct: 102 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 161
Query: 144 AGLVIGGKDVTFEKERISR--INILIGTPGRILQHMDQAVGFNT--SNLQLLVLDEADRC 199
+VIGG + E++R+ IL+ TPGR+ H++ GF T +++LVLDEAD
Sbjct: 162 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHL 221
Query: 200 LDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT-DYKQVGTMEVLNANSSS 258
LDMGF++ ++ II+ +P RQT LFSAT + + + ++L D++ V + +
Sbjct: 222 LDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVH----EGTI 277
Query: 259 ATPESLQQSYIEVPLPDKLDILFSFIKSHLKS----KLIVFLSSSKQVHFVYETFRKLQP 314
T + ++Q ++ L +L++ ++ H+ K+IVF +++ V + +L
Sbjct: 278 ETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELN- 336
Query: 315 GISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDT 374
+++ +H R+ Q+ RT ++F +++ + L ++DV ARG+D+P V V+QV P+D +
Sbjct: 337 -LNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQ 395
Query: 375 YIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRL 417
YIHR+GR R GKEG+ +++L P EE FL LK I S L
Sbjct: 396 YIHRLGRTGRKGKEGEGILLLAPWEEY-FLSSLKDLPITKSPL 437
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 226 bits (575), Expect = 1e-58
Identities = 135/389 (34%), Positives = 219/389 (55%), Gaps = 21/389 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F P+S +LK +K+A F +T +Q ++P+ L+G DVL AKTG+GKT+AFL+P IE
Sbjct: 361 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 420
Query: 103 LYREKWTDMDG----LGALIISPTRELAMQIYEVLSKIGK-HTTFSAGLVIGGKDVTFEK 157
+ + D + L++ PTRELA Q + + K H + +VIGG + E+
Sbjct: 421 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 480
Query: 158 ERISR--INILIGTPGRILQHMDQAVGFNTS--NLQLLVLDEADRCLDMGFKRTLDAIIN 213
R+ IL+ TPGR+ H++ GF T +++LVLDEAD LDMGF+R ++ II
Sbjct: 481 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 540
Query: 214 NLPASRQTLLFSATQSQSLDDLARLSLT-DYKQVGTMEVLNANSSSATPESLQQSYIEVP 272
+P RQT LFSAT + + + ++L D++ + ++ S T + + Q Y+
Sbjct: 541 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQ----EGSGETHQKVTQMYMIAS 596
Query: 273 LPDKLDILFSFIKSHLKS----KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQT 328
L +L +K H+ K+I+F +++ V + +L +++ +H R+ Q+
Sbjct: 597 LDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLS--LNVREIHSRKPQS 654
Query: 329 ARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKE 388
RT D+F +++ + L ++DV ARG+D+P V V+Q+ P D + YIHR+GR R GKE
Sbjct: 655 YRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKE 714
Query: 389 GKSLIMLTPEEEEGFLKRLKTKNIEPSRL 417
G+ +++L P EE F+ +K I S L
Sbjct: 715 GEGVLLLAPWEEY-FMSSVKDLPITKSPL 742
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 224 bits (572), Expect = 3e-58
Identities = 177/562 (31%), Positives = 269/562 (47%), Gaps = 43/562 (7%)
Query: 47 PISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE 106
P+S+ L+ ++ F ++T +Q +IPL L DV A TGSGKTLAFL+P++E L R
Sbjct: 13 PLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRR 72
Query: 107 K----WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTF---SAGLVIGGKDVTFEKER 159
W + +GAL+ISPTRELA QI EVL++ +H + L++GG + +
Sbjct: 73 HKETPWGPKE-IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIAT 131
Query: 160 ISRIN--ILIGTPGRILQHM-----DQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAII 212
+ R IL+ TPGR+ D + +L+ LVLDEADR LD+GFK +++ I+
Sbjct: 132 LRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNIL 191
Query: 213 NNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP 272
LP R+T LFSATQ+ + DL R L + V E + N TP LQ Y V
Sbjct: 192 GYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVN----TPARLQNFYRIVE 247
Query: 273 LPDKLDILFSFIKSHLK--SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTAR 330
K L F+ S K++VF + V + E L P +++ +HG+ K R
Sbjct: 248 PELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMKNK-R 306
Query: 331 TETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGK 390
++KF L TDV+ARG+D P ++WV+Q D P +++HRVGR AR G EG
Sbjct: 307 ANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGN 366
Query: 391 SLIMLTPEEEE--GFLK--------RLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPE 440
+L+ L P E+ FLK +L T+ E + K
Sbjct: 367 ALVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAADKGVY 426
Query: 441 LKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFANSLG---LPGAPKIK-MRGMKSIE 496
K G +AF+S+VR+ + + + L + A + G LP P++K +G +
Sbjct: 427 DK--GMRAFVSHVRAYTKHECSAILRLKDLDLGKMATAYGLLQLPRMPELKNYQGGGYVA 484
Query: 497 KAKELKNTSRQLLTLAKANDEGDVIKENKPEVRTRYDKMFERKNQTVLSEHYLNVTKAQA 556
A E+ L L N + + +++ K E + +K E + KA+
Sbjct: 485 PAFEV-----DLSKLTYKNAQKEQVRQKKMETYEQTGSWPGQKQHKKRVESWDQTKKAKL 539
Query: 557 HDDEDEDFIMVKRQDHELNEAE 578
++ K+Q + EAE
Sbjct: 540 DAKSKKELRKAKKQRKKAAEAE 561
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 223 bits (567), Expect = 1e-57
Identities = 179/564 (31%), Positives = 271/564 (47%), Gaps = 87/564 (15%)
Query: 19 DSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKL-TEIQRESIP--LS 75
+ +I ++ T E N I N F + + Q L I T IQ +P L+
Sbjct: 117 EDNQISNIGTTKEASNAPIKTTN-FAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLN 175
Query: 76 LKGHDVLGAAKTGSGKTLAFLIPVIEKLYR---EKWTDMDGLGALIISPTRELAMQIYEV 132
D A+TGSGKTLA+L+P++++L R T G+ A+I++PTREL QIY V
Sbjct: 176 TDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNV 235
Query: 133 LSKIGK----HTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSN 187
+K+ H S VIGG+ EK RI + +NILIGTPGR+ H++ + S
Sbjct: 236 ANKLNNNPLSHWIVSCN-VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQ 294
Query: 188 LQLLVLDEADRCLDMGFKRTLDAIIN-------------NLPASRQTLLFSATQSQSLDD 234
++ +VLDE DR +DMGF+ TL I++ ++P+ + T+L SAT ++
Sbjct: 295 VRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKR 354
Query: 235 LARLSLTD--YKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS-- 290
L+ +L D Y + +E N S A PE L Q Y+ VP +L L + ++SH++S
Sbjct: 355 LSDSALKDALYLKSSIVEETNDGYSQA-PEQLLQRYVVVPPKLRLVSLVALLRSHVRSYK 413
Query: 291 KLIVFLSSSKQVHFVYETFR-----------------------------KLQPGISLMHL 321
K+I+FLS S V F +E FR ++ ++ L
Sbjct: 414 KIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRL 473
Query: 322 HGRQKQTARTETLDKFSRAQ----HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
HG Q RT TL+ FS ++ H+ L TDV ARG+D P+VD V+Q D P D Y+H
Sbjct: 474 HGSLSQQIRTSTLNLFSSSEDSGSHI-LLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 378 RVGRAARFGKEGKSLIMLTPEEEE--GFLKRLKTKNI-----EPSRL------------N 418
R+GR AR G G +++ L P+E E LK + NI PS L N
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLLSAGFSQGKTNTN 592
Query: 419 XXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVR--SIYIQKDKEVFHFDKIPLEQFA 476
++ ++ + ++AF SYVR + ++ ++ +F+ + L A
Sbjct: 593 DWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIA 652
Query: 477 NSLGLPGAPKIKMRGMKSIEKAKE 500
S L AP K+ G S + K+
Sbjct: 653 KSFALREAPG-KISGANSSKPRKQ 675
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 221 bits (562), Expect = 4e-57
Identities = 139/368 (37%), Positives = 202/368 (54%), Gaps = 16/368 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
FQ + +S LKGL F T+IQ ++IPL+L G D++GAA TGSGKT AF++P++E+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 103 L-YREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI- 160
L YR K + LI+ PTRELAMQ + V +KI T L IGG + +++ +
Sbjct: 321 LLYRPK--KVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 161 SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
R +I+I TPGR + HM + GF N++++V+DEADR L+ GF L+ II P SRQ
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQ 438
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL--- 277
T+LFSAT + +DDL RLSL +V ++ T + L Q ++ V +L
Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRPVRV------FVDNKKTTAKLLTQEFVRVRPQRELLRP 492
Query: 278 DILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
+L K + I+F S H + F L ++ +HG Q R L+ F
Sbjct: 493 AMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLL--SLNATEIHGSLSQEQRVRALEDF 550
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
+ L +TDV +RGID ++ VI + P + Y+HRVGR AR G+ G++ I L
Sbjct: 551 RDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRA-ITLAG 609
Query: 398 EEEEGFLK 405
E + LK
Sbjct: 610 EGDRKVLK 617
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 221 bits (562), Expect = 4e-57
Identities = 155/463 (33%), Positives = 240/463 (51%), Gaps = 54/463 (11%)
Query: 8 NTQQRKLIRE----RDSQKIKDLETKV-EEYNPKIAKANLFQDLPISEQTLKGLKEAAFI 62
N ++R+ I+ +++ I +L V ++ K+ + F +L + + + +
Sbjct: 192 NQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKM 251
Query: 63 K-LTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY--REKWTDMDGLGALII 119
+T +Q++SIP+ L+G D L ++TGSGKTLA+ IPV++ L K DG AL++
Sbjct: 252 SSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVL 311
Query: 120 SPTRELAMQIYEVLSKIGKHTTFSA-GLVIGGKDVTFEKERISR-INILIGTPGRILQHM 177
PTRELA+Q ++ + K+ K T+ G+++GG+ EK R+ + INILI TPGR++ H+
Sbjct: 312 VPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHI 371
Query: 178 DQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS---RQTLLFSATQSQSLDD 234
+ S L+ LV DEADR LD+GF++ + I+N + A RQ +L SAT ++ +
Sbjct: 372 KSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTR 431
Query: 235 LARLSLTDYKQVGTMEV----LNANS----------------SSATPESLQQSYIEVPLP 274
LA +SL D + ++ LN S A PESL+Q VP
Sbjct: 432 LADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSK 491
Query: 275 DKLDILFSFIKSHLK----SKLIVFLSSSKQVHFVYETFRKLQ------------PGISL 318
+L L +FI K K++VF SS + V F Y F + P S+
Sbjct: 492 LRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASM 551
Query: 319 ----MHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDT 374
+ LHG +Q RT +FS ++ L TDV ARG+D P V W++Q + P
Sbjct: 552 RLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAE 611
Query: 375 YIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRL 417
YIHR+GR AR G G SL++L P E E ++ L + I S +
Sbjct: 612 YIHRIGRTARIGCHGSSLLILAPSEAE-YVNSLASHKINVSEI 653
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 219 bits (558), Expect = 1e-56
Identities = 133/404 (32%), Positives = 233/404 (56%), Gaps = 23/404 (5%)
Query: 27 ETKVEEYNPKI----AKANLFQD---LPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGH 79
E K + Y P+ AK ++++ L +S LKGL ++K + IQ +IP++L G
Sbjct: 210 EAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGK 269
Query: 80 DVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH 139
D++ A TGSGKT AF+IP+IE+L K + +++ PTRELA+Q+ +V +I +
Sbjct: 270 DIIAGAVTGSGKTAAFMIPIIERLLY-KPAKIASTRVIVLLPTRELAIQVADVGKQIARF 328
Query: 140 TT-FSAGLVIGGKDVTFEKERI-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEAD 197
+ + GL +GG ++ +++ + SR +I+I TPGR + H+ + FN ++++LV+DEAD
Sbjct: 329 VSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEAD 388
Query: 198 RCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSS 257
R L+ GF+ L+ I+ LP++RQ LLFSAT + + L LSL ++ +++
Sbjct: 389 RMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRI----MIDPPKK 444
Query: 258 SATPESLQQSYIEVPLPDKLD--ILFSFIKS---HLKSKLIVFLSSSKQVHFVYETFRKL 312
+AT L Q ++ + D L +LF+ I+ + +++VF++ + H + L
Sbjct: 445 AAT--KLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 502
Query: 313 QPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDV 372
G+S+ LHG Q R ++++KF + L TD+ +RG+D P ++ VI D P+
Sbjct: 503 --GMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSY 560
Query: 373 DTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSR 416
+ Y+HRVGR AR G+EG+S+ + ++ + R K++E ++
Sbjct: 561 EIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENK 604
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 218 bits (556), Expect = 2e-56
Identities = 130/360 (36%), Positives = 201/360 (55%), Gaps = 13/360 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
++DL ++E + E + ++IQRE+IP++L+G DV+G A+TGSGKT AF +P++
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHA 122
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L AL+++PTRELA QI E +G +V+GG D+ + ++++
Sbjct: 123 LLENPQRYF----ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAK 178
Query: 163 I-NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+I+I TPGR++ H++ GFN ++ LV+DEADR L+M F+ LD I+ LP R+T
Sbjct: 179 KPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRT 238
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
LFSAT ++ + L R SL D +V ++ T E LQQSY+ +P+ K L
Sbjct: 239 FLFSATMTKKVKKLQRASLKDPVKV------EVSNKYQTVEQLQQSYLFIPVKYKDVYLV 292
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
+ + ++F S+ R L G++ + LHG+ Q R L+KF
Sbjct: 293 HILNELAGNSFMIFCSTCNNTVKTALMLRAL--GLAAIPLHGQMSQNKRLAALNKFKAKN 350
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L STDV +RG+D P VD V+ D P YIHRVGR AR G+ GK++ +++ + E
Sbjct: 351 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 410
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 218 bits (554), Expect = 4e-56
Identities = 146/410 (35%), Positives = 210/410 (50%), Gaps = 58/410 (14%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREK 107
++E TLK +KE +F+ +TEIQ ++I L+G D+L AAKTGS +E + K
Sbjct: 376 VNENTLKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS----------VELTVKLK 425
Query: 108 WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INIL 166
+ + G I+SPTRELAMQI+ + HT GL++GG + + E ++++ INI+
Sbjct: 426 FMPTNRPGVFILSPTRELAMQIFGGANTHHMHTY---GLIMGGDNTSAEAQKLANGINII 482
Query: 167 IGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSA 226
+ TPG +L +M GF NLQ LV+DEADR LD+GF+ L II LP R T+L SA
Sbjct: 483 VATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTCRHTMLLSA 542
Query: 227 TQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKS 286
TQ++ ++DLAR+SL + G ++
Sbjct: 543 TQTRKVEDLARISL----KKGAIK------------------------------------ 562
Query: 287 HLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLF 346
+ K K++VF SSS V + YE + + ++ +HG+QKQ T T +F +A L
Sbjct: 563 NRKRKIMVFFSSSMSVKYHYELLNYMD--LPILAIHGKQKQNKGTTTFFQFCKADSGILL 620
Query: 347 STDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAAR-FGKEGKSLIMLTPEEEEGFLK 405
DV ARG+D P VDW++Q D +D YIHRV R AR G L++L P EE GFL
Sbjct: 621 CMDVAARGLDIPEVDWIVQHDPLDDPKEYIHRVSRTARGLNGRGHVLLILCP-EEMGFLH 679
Query: 406 RLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRS 455
LK S + K+ L Q+A+ SY R+
Sbjct: 680 YLKQSKFPLSEFDFSWSKISDIQSQLEKLIEKNCFLHKAAQEAYKSYTRA 729
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 218 bits (554), Expect = 4e-56
Identities = 128/362 (35%), Positives = 199/362 (54%), Gaps = 13/362 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+DL +++ + + + K T+IQ E+IPL+L+G D++G A+TGSGKT AF +P++
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L L AL+++PTRELA QI E +G + +++GG D + +++
Sbjct: 86 LLETP----QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 163 I-NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+I+I TPGR++ H++ GFN L+ LV+DEADR L+M F+ +D I+ +P R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
LFSAT ++ + L R +L + + +S T E LQQ YI +P K L
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV------SSKYQTVEKLQQYYIFIPSKFKDTYLV 255
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
+ + ++F S+ R L G + + LHG+ Q+ R +L+KF
Sbjct: 256 YILNELAGNSFMIFCSTCNNTQRTALLLRNL--GFTAIPLHGQMSQSKRLGSLNKFKAKA 313
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L +TDV +RG+D P VD V+ D P YIHRVGR AR G+ GK++ +T + E
Sbjct: 314 RSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVE 373
Query: 402 GF 403
F
Sbjct: 374 LF 375
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 216 bits (551), Expect = 8e-56
Identities = 130/365 (35%), Positives = 201/365 (54%), Gaps = 14/365 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F +L + + ++ K + K T IQ ++IP +L+GHD++G A+TGSGKT AF IP++ +
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE-KERIS 161
L W D + A I++PTRELA QI E +G + ++GG ++ + ++ +
Sbjct: 185 L----WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR 240
Query: 162 RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS-RQ 220
+ +I+I TPGR++ H++ GF+ L+ LV+DEADR LDM F LD I+ +P R
Sbjct: 241 KPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDIL 280
T LFSAT + +D L R SLT+ + ++ T ++L Q+ + VP K L
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAV------SNKYQTVDTLVQTLMVVPGGLKNTYL 354
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRA 340
+ + +I+F + + L+ S LHG Q R +LD F
Sbjct: 355 IYLLNEFIGKTMIIFTRTKANAERLSGLCNLLE--FSATALHGDLNQNQRMGSLDLFKAG 412
Query: 341 QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
+ L +TDV ARG+D PSVD V+ D P D +YIHRVGR AR G+ GKS+ +++ +
Sbjct: 413 KRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDL 472
Query: 401 EGFLK 405
E L+
Sbjct: 473 ELILR 477
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 214 bits (544), Expect = 5e-55
Identities = 160/563 (28%), Positives = 263/563 (46%), Gaps = 47/563 (8%)
Query: 58 EAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGAL 117
+ ++ T++Q S L DV+ + TGSGKTLAF++P++ + K D +GAL
Sbjct: 26 DKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD-IGAL 84
Query: 118 IISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGK--DVTFEKERISRINILIGTPGR--- 172
I+SP+REL QI V+ + + V GG+ D + + +NIL+ TPGR
Sbjct: 85 ILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQ 144
Query: 173 ILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSL 232
I+QH + LQLLV+DEADR ++ F+ + I++ +P R+T LFSATQ +
Sbjct: 145 IIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQVKEE 204
Query: 233 DDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKL 292
DDL L + KQV + N SA P +L+ Y+E +K + FI+ K+
Sbjct: 205 DDLMVFGLRNAKQVKVAQERN----SAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKI 260
Query: 293 IVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVA 352
++F S V + Y+ F + L +HG+ R + FS + + + STDV+A
Sbjct: 261 LIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMA 320
Query: 353 RGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE--EEGFLKRLKTK 410
RGID +DWVIQ D P+ ++HR GR AR G+EG +LI++ E+ FL +
Sbjct: 321 RGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYVNFLDNHEKV 380
Query: 411 NIEPSRL-NXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDK 469
++ ++ D + G +AF+S+V S + D
Sbjct: 381 KLDEIKVPTNNSRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVESYAKHDCHLICSLDD 440
Query: 470 IPLEQFANSLGLPGAPKIKMRGMKSIEKAKELKNTSRQLLTLA---------KANDEGDV 520
+ + ANS L PK M+ + + K+L R + + +AN E +
Sbjct: 441 LNVVGLANSYALLRLPK-----MRELSQRKDLDMFDRSAIETSEIKYADVKLEANRETVM 495
Query: 521 IKENKPEVRTRYDKMFERKNQTV-------------------LSEHYLNVTKAQAHDDED 561
++++ +V T K +R+ + E KA+ DD
Sbjct: 496 KEKHEKKVETLAAKDKKRREKEARKLKKMGGRFRNGGGTGRKAEEKKALKRKAEEEDDAQ 555
Query: 562 EDFIMVKR-QDHELNEAELPELL 583
D ++KR + +L++ E+ ++L
Sbjct: 556 NDIRLLKRIKRGKLSKKEIKDVL 578
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 214 bits (544), Expect = 5e-55
Identities = 175/583 (30%), Positives = 258/583 (44%), Gaps = 103/583 (17%)
Query: 27 ETKVEEYNPKIAKANLFQDLPISEQTLKG-----LKEA-AFIKLTEIQRESIPLSLKGHD 80
ETK E + AK+ LF S L LKE F T +Q ++IP+ L G D
Sbjct: 10 ETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRD 69
Query: 81 VLGAAKTGSGKTLAFLIPVIEKL--YREKWTDMDGLGALIISPTRELAMQIYEVLSKI-G 137
VL A TG+GKT+A+L P+I L + K G AL+I PTREL +Q+YE L K+
Sbjct: 70 VLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Query: 138 KHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEA 196
+ G V+GG+ EK R+ + I+ILI TPGR+L H+ F NL+ ++ DEA
Sbjct: 130 RFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEA 189
Query: 197 DRCLDMGFKRTLDAIINNLPAS----------------RQTLLFSATQSQSLDDLARLSL 240
D L++G+ + ++ II L + +Q LL SAT + ++DLA+LSL
Sbjct: 190 DSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSL 249
Query: 241 TDYKQVGTME----------------------VLNANSSS-------ATPESLQQSYIEV 271
D +G V++ N S+ P L Q Y+ V
Sbjct: 250 DDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRV 309
Query: 272 PLPDKLDILFSFIKS----HLKSKLIVFLSSSKQVHFVYETFRKLQ--PG---------- 315
P +L L S +K+ K++VF S+ V F Y + Q P
Sbjct: 310 PCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKE 369
Query: 316 ----ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPED 371
LHG +Q R F + L STDV ARG+DFP V +IQ DCP +
Sbjct: 370 LFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGE 429
Query: 372 VDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIE---------------PSR 416
Y+HRVGR AR G++G++L+ L P E + +LK LK P
Sbjct: 430 ATEYVHRVGRTARIGEKGEALLFLQPIEID-YLKELKKHGASLTEYPLMKVLDKFPIPGN 488
Query: 417 LNXXXXXXX--------XXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKD--KEVFH 466
+ + +P++K L + AF+S+VR K K +F
Sbjct: 489 MPRIKKVLSLESHPWVISLQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFV 548
Query: 467 FDKIPLEQFANSLGLPGAPKI--KMRGMKSIEKAKELKNTSRQ 507
K+ L A S L P + K +++++ ++ + +Q
Sbjct: 549 VKKLHLGHVAKSFALREQPSLVGKSHHKETMKRKRDERQKGQQ 591
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 212 bits (539), Expect = 2e-54
Identities = 167/576 (28%), Positives = 268/576 (45%), Gaps = 97/576 (16%)
Query: 6 KHNTQQRKLIRERDSQKIKDL-ETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIK- 63
+ T++ L + D + +K L + V+ I + L + +K L++ I+
Sbjct: 291 RFRTKKIGLFDQSDVEALKQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLLSIRE 350
Query: 64 LTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE--KWTDMDGLGALIISP 121
LT +Q+++IP L+G DVL ++TGSGKTLA+ +P++E L ++ + DG+ AL+I P
Sbjct: 351 LTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVP 410
Query: 122 TRELAMQIYEVLSKIGK-HTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQ 179
TREL MQ YE++ K+ K +T G ++GG+ EK R+ + INILIGTPGR++ H+
Sbjct: 411 TRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLH 470
Query: 180 AVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR-----------QTLLFSATQ 228
F + LQ L+LDEADR L++G++R + ++ + R Q +L SAT
Sbjct: 471 TASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATL 530
Query: 229 SQSLDDLARLSLT-------------------DYKQVGTMEVL------------NANSS 257
+ + LA L+L D Q T+E L +
Sbjct: 531 TSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGV 590
Query: 258 SATPESLQQSYIEVPLPDKLDILFSFIKSHLKS-----KLIVFLSSSKQVHFVYETFRK- 311
+ PE+LQ SY+ VP +L L S + + + K IVF+S+++ V+F ++ +
Sbjct: 591 LSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEA 650
Query: 312 ------------------------LQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFS 347
L G+ LHG QT R F L +
Sbjct: 651 LTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLA 710
Query: 348 TDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRL 407
TDVV RGID P + V+Q P+ ++HRVGR AR G++G++++ LTP E + F++ L
Sbjct: 711 TDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQ-FVRHL 769
Query: 408 KTKNI----------------EPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFIS 451
+ K I + D EL KAF+S
Sbjct: 770 EKKRIRIQQGDMYAYLQTLLPKDDEARTVQEAASNLQHKFQTLLEDDRELHDKSCKAFVS 829
Query: 452 YVR--SIYIQKDKEVFHFDKIPLEQFANSLGLPGAP 485
+++ S + ++ K +F+ + FA S L AP
Sbjct: 830 WMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEAP 865
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 211 bits (538), Expect = 3e-54
Identities = 158/499 (31%), Positives = 252/499 (49%), Gaps = 39/499 (7%)
Query: 21 QKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHD 80
Q + ++ + +E + I A F + IS TLK L + +K+T +Q ++ L G D
Sbjct: 355 QSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKD 414
Query: 81 VLGAAKTGSGKTLAFLIPVIEKLYREKWTD-----MDGLGALIISPTRELAMQIY-EVLS 134
L AKTG+GK++AFL+P IE + + + + + LI+ PTRELA QI E +
Sbjct: 415 ALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKA 474
Query: 135 KIGKHTTFSAGLVIGGKDVTFEKERISR--INILIGTPGRILQHMDQAVGFNTS--NLQL 190
+ H +IGG +++R+ ILI TPGR+L H++ G + L+L
Sbjct: 475 LLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKL 534
Query: 191 LVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT-DYKQVGTM 249
++DEAD LD+GFKR ++ II+ LP RQ+LLFSAT + + +++L L D+ + T+
Sbjct: 535 FIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTI 594
Query: 250 EVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS----KLIVFLSSSKQVHFV 305
+ T + ++QS I P ++ +K H+ + K+IVF S+ +
Sbjct: 595 GL----GCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLM 650
Query: 306 YETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQ 365
Y R+++ +++ +H R+ Q RT D+F + + L ++DV ARG+++P V VIQ
Sbjct: 651 YTLLREMK--LNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQ 708
Query: 366 VDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSRLNXXXXXXX 425
V P D + YIHR+GR R GK GK L+++ P E FL LK +EP +
Sbjct: 709 VGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERY-FLDELKDLPLEP--IPAPDLDSR 765
Query: 426 XXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFAN----SLGL 481
D +K A++ Y S+ +E DK L + AN S+GL
Sbjct: 766 VKHQVDQSMAKIDTSIKEAAYHAWLGYYNSV-----RETGR-DKTTLAELANRFCHSIGL 819
Query: 482 PGAPKIKMR-----GMKSI 495
P + R G+K I
Sbjct: 820 EKPPALFRRTAVKMGLKGI 838
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 211 bits (536), Expect = 4e-54
Identities = 146/427 (34%), Positives = 220/427 (51%), Gaps = 25/427 (5%)
Query: 6 KHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANL---------FQDLPISEQTLKGL 56
KH+ + + +E +K K E E+ K+ A+ F + +S ++ +
Sbjct: 113 KHDNLRLREKKESKKKKKKAGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAI 172
Query: 57 KEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGA 116
+I T IQ +IP++L G D+ G A TG+GKT A+++P +E+L +
Sbjct: 173 GVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRV 232
Query: 117 LIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRIN--ILIGTPGRIL 174
L++ PTREL Q+Y+V ++ + TT GL IGG DV +E + R N I+I TPGR++
Sbjct: 233 LVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVK-AQEAVLRQNPDIVIATPGRLI 291
Query: 175 QHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDD 234
H+ F ++++L+LDEADR LD F + IIN+ +RQT+LFSAT S+ + D
Sbjct: 292 DHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKD 351
Query: 235 LARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV---PLPDKLDILFSFIKSHLKSK 291
LA +SL +V N++ +L+Q +I + D+ IL S I
Sbjct: 352 LAAVSLDKPIKV------FVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDH 405
Query: 292 LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVV 351
+VF+ + KQ H ++ L G+ LHG Q R E+L KF Q L +TDV
Sbjct: 406 CMVFVQTKKQAHRLHILLGLL--GVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVA 463
Query: 352 ARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKN 411
ARG+D V VI P + YIHRVGR AR G+ G S + L E+E +K + KN
Sbjct: 464 ARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGIS-VSLAGEKERKIVKDI-IKN 521
Query: 412 IEPSRLN 418
E + N
Sbjct: 522 AESTIKN 528
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 210 bits (535), Expect = 6e-54
Identities = 162/508 (31%), Positives = 257/508 (49%), Gaps = 43/508 (8%)
Query: 15 IRERDSQKIKDLETKVEEY---NPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRES 71
+RE D K K ++ +EE + I A F + IS TLK L + +K+T +Q +
Sbjct: 300 VRE-DLSKRKSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDAT 358
Query: 72 IPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYR-----EKWTDMDGLGALIISPTRELA 126
+ L G D L AKTG+GK++AFL+P IE + + + + + ALI+ PTRELA
Sbjct: 359 LSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELA 418
Query: 127 MQIY-EVLSKIGKHTTFSAGLVIGGKDVTFEKERISR--INILIGTPGRILQHMDQAVGF 183
QI E + + H +IGG +++R+ ILI TPGR+L H++ G
Sbjct: 419 SQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGL 478
Query: 184 NTS--NLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT 241
+ L+L ++DEAD LD+GF+R ++ II+ LP RQ+LLFSAT + + +++L L
Sbjct: 479 TSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 538
Query: 242 -DYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS----KLIVFL 296
D+ + T+ + T + ++QS I P ++ +K H+ + K+IVF
Sbjct: 539 RDHSYIDTIGL----GCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFC 594
Query: 297 SSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGID 356
S+ +Y R+++ +++ +H R+ Q RT D+F + + L ++DV ARG++
Sbjct: 595 STGMVTSLMYTLLREMK--LNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMN 652
Query: 357 FPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSR 416
+P V VIQV P D + YIHR+GR R GK G+ L+++ P E FL LK +EP
Sbjct: 653 YPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERY-FLDELKDLPLEP-- 709
Query: 417 LNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKEVFHFDKIPLEQFA 476
+ D +K A++ Y S+ +E DK L + A
Sbjct: 710 IPAPDLDSIVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSV-----RETGR-DKTTLAELA 763
Query: 477 N----SLGLPGAPKIKMR-----GMKSI 495
N S+GL P + R G+K I
Sbjct: 764 NRFCHSIGLEKPPALFRRTAVKMGLKGI 791
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 207 bits (527), Expect = 5e-53
Identities = 133/424 (31%), Positives = 222/424 (51%), Gaps = 33/424 (7%)
Query: 2 AKKQKHNTQQRKLIRERDSQKIKDLETK-------------VEEYNPKIAKANLFQDLPI 48
A + +++ ++ + D+ K+KD + K +Y+ ++ FQD+ +
Sbjct: 170 ASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLS----FQDMNL 225
Query: 49 SEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKL-YREK 107
S LK + F + T IQ+ IP+ L G D+ A TG+GKT AF +PV+E+L Y+ +
Sbjct: 226 SRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPR 285
Query: 108 WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRI-NIL 166
+ + L++ PTREL +Q++ V ++ + + L +GG DV ++ + +IL
Sbjct: 286 QAPVTRV--LVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDIL 343
Query: 167 IGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSA 226
I TPGR++ H+ F+ S++++L+LDEADR LD F+ + II RQT+LFSA
Sbjct: 344 IATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSA 403
Query: 227 TQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV---PLPDKLDILFSF 283
T + + DLA +SL + ++ NS++ L+Q +I + D+ I+ +
Sbjct: 404 TMTDEVKDLASVSLKNPVRI------FVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 284 IKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHV 343
+ +++F + KQ H ++ + G+ + LHG QT R E L +F Q
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLM--GLQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 344 CLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
L +TDV ARG+D V VI P + Y+HRVGR AR G+ G+S + L E+E
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS-VSLVGEDERKM 574
Query: 404 LKRL 407
LK +
Sbjct: 575 LKEI 578
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 204 bits (519), Expect = 4e-52
Identities = 143/454 (31%), Positives = 224/454 (48%), Gaps = 28/454 (6%)
Query: 55 GLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGL 114
GL F +T +Q +IP+ DV+ + TGSGKT AF+IPV+EK+ +E+
Sbjct: 21 GLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFK 80
Query: 115 GA----LIISPTRELAMQIYEVLSKIGKHTT-----FSAGLVIGGKDVTFEKERIS---- 161
A LII+PTREL+ QI V+ +H L++G + T + +
Sbjct: 81 KAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRN 140
Query: 162 RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
R ILIGTPGR+L + Q TS ++V+DEADR LDM F + + I+ LP R+T
Sbjct: 141 RPQILIGTPGRVLDFL-QMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRT 199
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
LFSAT + D+ + L + ++ NS + P SL+ +Y V +KL +L
Sbjct: 200 GLFSATMRSAGSDIFKTGLRNPVRI------TVNSKNQAPSSLKLNYCVVNPAEKLQLLV 253
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPG------ISLMHLHGRQKQTARTETLD 335
S + ++ K IV+ + V + Y + L + + LHG+ + +ART+TL
Sbjct: 254 SILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLT 313
Query: 336 KFSRA-QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM 394
F+ + + LF+TDV ARGID P VD VIQ+D P + D ++HR GR R + GK++
Sbjct: 314 AFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITF 373
Query: 395 LTPEEEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXX-XFKDPELKYLGQKAFISYV 453
L EE F+ ++ KN+E L+ +D + G KA+++++
Sbjct: 374 LNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVKAYVAFI 433
Query: 454 RSIYIQKDKEVFHFDKIPLEQFANSLGLPGAPKI 487
+ +F + A GL P++
Sbjct: 434 KYYSNHSATSIFRLQSLDYVGIAKLYGLFRLPRM 467
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 203 bits (516), Expect = 9e-52
Identities = 127/374 (33%), Positives = 204/374 (53%), Gaps = 17/374 (4%)
Query: 31 EEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSG 90
+E K K+ F+ L + +K+ + T IQR+++PL L G DV+ A+TGSG
Sbjct: 18 KEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSG 77
Query: 91 KTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGG 150
KT AFLIP++EKL ++ G+ ALI+SPTR+LA Q + ++GK T L++GG
Sbjct: 78 KTAAFLIPMLEKL--KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGG 135
Query: 151 KDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLD 209
+ + E +++ +++I TPGR++ + + ++ +V DEAD MGF L
Sbjct: 136 DSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLH 195
Query: 210 AIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYI 269
I+ L +RQTLLFSAT +L + A+ L + Q+ ++V N S L+ S++
Sbjct: 196 QILTQLSENRQTLLFSATLPSALAEFAKAGLRE-PQLVRLDVENKISPD-----LKLSFL 249
Query: 270 EVPLPDKLDILFSFIKSHLKS--KLIVFLSSSKQVHFVYETFR--KLQPGISLMHLHGRQ 325
V +K L ++ H+ S + ++F+S+ V FV F+ ++P + +G
Sbjct: 250 TVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC----YGDM 305
Query: 326 KQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARF 385
Q AR + +F + + L TD+ ARGID P +D VI D P ++HRVGRAAR
Sbjct: 306 DQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARA 365
Query: 386 GKEGKSLIMLTPEE 399
G+ G + +TPE+
Sbjct: 366 GRTGCAYSFVTPED 379
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 201 bits (511), Expect = 4e-51
Identities = 135/434 (31%), Positives = 227/434 (52%), Gaps = 41/434 (9%)
Query: 10 QQRKLIRERDSQKIKDLETKVEEYNPKIAKANL-FQDLPISEQTLKGLKEAAFIKLTEIQ 68
++RK + + SQ+ +D + + + N+ F+ + +S Q LK A + T IQ
Sbjct: 116 EKRKSGKSKKSQENEDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQ 175
Query: 69 RESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKL-YREKWTDMDGLGALIISPTRELAM 127
+ IP++L G D+ A TG+GKT AF++P++E++ YR K + L++ PTRELA+
Sbjct: 176 QACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRV--LVLVPTRELAI 233
Query: 128 QIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-SRINILIGTPGRILQHMDQAVGFNTS 186
Q+++V K+ L GG D+ ++ + S ++++ TPGR++ H+ + FN S
Sbjct: 234 QVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLS 293
Query: 187 NL------------------------QLLVLDEADRCLDMGFKRTLDAIINNLPASRQTL 222
N+ Q+LVLDEADR L+ F+ ++ +I +RQTL
Sbjct: 294 NIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTL 353
Query: 223 LFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD---I 279
LFSAT ++ +D+LA +SL ++ +N N+ +A L+Q +I + + D +
Sbjct: 354 LFSATMTEEIDELASMSLQKPVKI----FINENTDTAL--KLRQEFIRIRAGRETDREAM 407
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
+ + + ++ IVF+ + K + L GI + + Q R E+L KF +
Sbjct: 408 VAALVTRTFQTNTIVFVRTKKDCQRMQILLGLL--GIKVGQMQSSLTQGQRIESLSKFKK 465
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
A+ L STD+ +RG+D V VI ++ P+ + YIHRVGR AR GK G+S I L E+
Sbjct: 466 AEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRS-ISLVGED 524
Query: 400 EEGFLKRLKTKNIE 413
E LK + N +
Sbjct: 525 ERKLLKEIVNSNAD 538
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 201 bits (510), Expect = 5e-51
Identities = 149/475 (31%), Positives = 240/475 (50%), Gaps = 31/475 (6%)
Query: 44 QDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKL 103
+D+ ++ + K ++E F K+TE+Q + IP LKG DV+ + TG+GKT+AFL P++ +
Sbjct: 7 EDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCI 66
Query: 104 YREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-SR 162
Y K G+ A++I+PTRELA+QI EV IGG + + +R+
Sbjct: 67 YDGKGRGRPGVTAVVITPTRELALQIREVAGLF----DVKCECFIGGMSIEEDYKRMKEE 122
Query: 163 INILIGTPGRILQHMDQAVGFNT---SNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR 219
+I +GTPGR+L + VG T S+L LVLDEAD+ L GF+ L ++ LP +R
Sbjct: 123 FSIAVGTPGRLL----EIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNR 178
Query: 220 QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
T LFSAT++ S+D L+R+ L + + ++ P +L+ YI V +KL +
Sbjct: 179 VTGLFSATRNDSVDKLSRVFLRNPVSINV-------GNNEMPVALE--YIVVSPMEKLLV 229
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L + + IVF ++ +V F + G ++ +HG+ Q R ++F +
Sbjct: 230 LMDIVTGR---RCIVFFATCSEVDFFSGLVSRAGFG-NICKIHGKISQDERNRVYEEFFQ 285
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
+ LF TDV ARGIDF VD V+ D P++ + +HR GR AR G +G+S++ + P
Sbjct: 286 RDGL-LFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMP-N 343
Query: 400 EEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQ 459
E +++ LK K I PEL L KAF+SY+RS
Sbjct: 344 ERAYVEFLKLKGIPAVE---SSYRMKSSLSYQDIKSMISPELLGLSVKAFVSYIRSYKEH 400
Query: 460 KDKEVFHFDKIPLEQFANSLGLPGAPKI-KMRGMKSIEKAKELKNTSRQLLTLAK 513
+ + + + A L P + ++R +K + K ++ ++ L K
Sbjct: 401 FVSYILDYKGLDFDSLAELFFLERIPGMAELRNVKFEKFTKPARDGKKRALPKKK 455
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 198 bits (504), Expect = 2e-50
Identities = 121/358 (33%), Positives = 201/358 (55%), Gaps = 15/358 (4%)
Query: 39 KANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP 98
K N F+D + + L G+ EA F K + IQ E+IP+++ G D+L AK G+GKT AF+IP
Sbjct: 44 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 103
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
+EK+ + ++ + ALI+ PTRELA+Q +V+ +GKH S + GG ++ +
Sbjct: 104 TLEKVKPK----LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 159
Query: 159 RISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
R++ ++IL+GTPGR+L + V + S+ L ++DEAD+ L FK ++ I++ LP
Sbjct: 160 RLNETVHILVGTPGRVLDLASRKVA-DLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 218
Query: 218 SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL 277
+ Q+LLFSAT ++ + L ++ ME L T + + Q Y V KL
Sbjct: 219 THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-------TLKGITQYYAFVEERQKL 271
Query: 278 DILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
L + ++ I+F +S+ +V + + L G S + H R KQ R + +F
Sbjct: 272 HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEF 329
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIML 395
+ + L +D++ RGID +V+ VI D P+ +TY+HR+GR+ RFG G ++ ++
Sbjct: 330 RQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 387
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 198 bits (504), Expect = 2e-50
Identities = 123/364 (33%), Positives = 202/364 (54%), Gaps = 14/364 (3%)
Query: 39 KANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP 98
K+ FQ + + + +KG+ + + T IQR++IPL L+G DV+ AKTGSGKT FLIP
Sbjct: 93 KSGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIP 152
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
+ EKL R + T G ALI+SPTRELA+Q Y+ + ++G+ + LV+GG + +
Sbjct: 153 LFEKLQRREPT--KGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFS 210
Query: 159 RISRI-NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
I ++++ TPGR L H+ + ++++ +V DEADR +MGF L+ ++ LP+
Sbjct: 211 AIHTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPS 269
Query: 218 SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL 277
SRQT++FSAT + L + AR L D ++ + S P++L ++ D+
Sbjct: 270 SRQTVMFSATLPKLLVEFARAGLND------PVLIRLDVESKLPDALALKFLYCRPDDRY 323
Query: 278 DILFSFIK--SHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLD 335
L +K ++S+ +VF + V + ++ + GIS ++ AR
Sbjct: 324 TALVVLLKYVIPVQSQTVVFAGTQHHVELI--SYILTEAGISNASVYSSLDPAARKINTA 381
Query: 336 KFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIML 395
KF + L TDV ARGID PS+D+V+ + P ++HRVGR AR G+ G + ++
Sbjct: 382 KFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIV 441
Query: 396 TPEE 399
+ ++
Sbjct: 442 STDD 445
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 197 bits (500), Expect = 7e-50
Identities = 135/367 (36%), Positives = 197/367 (52%), Gaps = 19/367 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F DL IS + LK A + T+IQ I L+G + +G AKTGSGKT AF +P+IEK
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 103 LYREKWT-DMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
W+ D G+ ALI++PTRELA+QI E + +G + L++GG D+ + +S
Sbjct: 69 -----WSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 162 -RINILIGTPGRI---LQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
R ++++ TPGR+ ++ + ++ LV+DEADR L F LD + LPA
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPA 183
Query: 218 S--RQTLLFSATQSQSLDDLARLSLTDYKQ-VGTMEVLNANSSSATPESLQQSYIEVPLP 274
S RQTLLF+AT + ++ L + K + EV N S P +LQQSYI V
Sbjct: 184 SEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNIS--VPSTLQQSYIFVSSQ 241
Query: 275 DKLDILFSF--IKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTE 332
+ L I + K I+F++ ++ +Y R L+ + + LH Q R
Sbjct: 242 VREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLE--LRVTELHSEMVQRERIN 299
Query: 333 TLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSL 392
+L +F L +TDV +RG+D PSV VI D P D D YIHRVGR AR G+ G+S+
Sbjct: 300 SLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESI 359
Query: 393 IMLTPEE 399
++T +
Sbjct: 360 SIVTERD 366
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 196 bits (498), Expect = 1e-49
Identities = 129/394 (32%), Positives = 206/394 (51%), Gaps = 37/394 (9%)
Query: 34 NPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTL 93
N K KA +Q + + K +++ F + T IQR++IP + G DV+ ++TGSGKT
Sbjct: 17 NRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTA 76
Query: 94 AFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDV 153
AF+IP+++KL R D G+ AL++SPTRELA+Q ++V+ ++G+ T ++GG +
Sbjct: 77 AFVIPMLQKLKRR---DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQI 133
Query: 154 TFEKERISRI----NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLD 209
+E+ S I +IL+ TPGR+L H+ + S +Q +V DEADR +MGF+ L
Sbjct: 134 ---EEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLT 189
Query: 210 AIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQV----------------------- 246
+ +P SRQTLLFSAT + L D A+ LTD V
Sbjct: 190 ETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDE 249
Query: 247 GTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK-LIVFLSSSKQVHFV 305
+L+ + + L+ S + + K L ++ ++K +VF ++ K V +V
Sbjct: 250 KLFALLHLCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYV 309
Query: 306 YETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQ 365
+ GI ++ + TAR + KF Q+ L TDV ARG+D P +D VI
Sbjct: 310 VGILHR--AGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVIN 367
Query: 366 VDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
+ P ++HRVGR AR G+ G ++ ++ +E
Sbjct: 368 LHFPPKAKLFVHRVGRVARAGRSGTAISLIANDE 401
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 194 bits (494), Expect = 3e-49
Identities = 122/371 (32%), Positives = 196/371 (51%), Gaps = 17/371 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F +L + E+ +K + + ++IQ E++P +L+G DV+G A+TGSGKT AF IP+++
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 103 LYREKWTDMDGLG--------ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVT 154
L + G A ++SPTRELA+QI E +G + +++GG D
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 155 FEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINN 214
+ + + + TPGR+ HM GF+ +L+ LVLDEADR L+ F+++L+ I+
Sbjct: 131 QQTIALGK-RPHVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEE 189
Query: 215 LPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP 274
+P R+T LFSAT ++ + L R L + ++ A S +T ++L+Q Y V
Sbjct: 190 IPLERKTFLFSATMTKKVRKLQRACLRNPVKI------EAASKYSTVDTLKQQYRFVAAK 243
Query: 275 DKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETL 334
K L + +S ++F + F+ R L G + + G+ Q+ R L
Sbjct: 244 YKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSL--GFRAIPISGQMTQSKRLGAL 301
Query: 335 DKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM 394
+KF + L TDV +RG+D PSVD VI D P + YIHRVGR AR G+ G + +
Sbjct: 302 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISL 361
Query: 395 LTPEEEEGFLK 405
+ E E +++
Sbjct: 362 VNQYELEWYIQ 372
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 192 bits (489), Expect = 1e-48
Identities = 123/378 (32%), Positives = 198/378 (51%), Gaps = 14/378 (3%)
Query: 25 DLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGA 84
D V N K K+ FQ + +S KG+ + + T IQR++IP+ L G DV+
Sbjct: 80 DTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 139
Query: 85 AKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSA 144
A+TGSGKT FL+P+ E+L + + G ALI+SPTRELA+Q + ++GK T
Sbjct: 140 ARTGSGKTACFLLPMFERL--KTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKT 197
Query: 145 GLVIGGKDVTFEKERI-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG 203
L++GG + + + +I+I TPGR++ H+ + +++ +V DEADR +MG
Sbjct: 198 ALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMG 256
Query: 204 FKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES 263
F L II LP QT+LFSAT + L + AR LT+ ++ + + E
Sbjct: 257 FAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTE------PVLIRLDVDTKLNEQ 310
Query: 264 LQQSYIEVPLPDKLDILFSFIKSHLK--SKLIVFLSSSKQVHFVYETFRKLQPGISLMHL 321
L+ S+ V K +L + + ++ + +VF+++ ++ E + +S H+
Sbjct: 311 LKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQR--VSCAHI 368
Query: 322 HGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGR 381
+ TAR L KF+ + L TD+ ARG+D P +D VI P ++HRVGR
Sbjct: 369 YSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGR 428
Query: 382 AARFGKEGKSLIMLTPEE 399
AR G+ G + ++ P+E
Sbjct: 429 VARAGRSGTAYSLVAPDE 446
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 192 bits (489), Expect = 1e-48
Identities = 147/446 (32%), Positives = 228/446 (50%), Gaps = 45/446 (10%)
Query: 1 MAKKQKH-----NTQQRKLIRERDSQKIKDLETKVEEYNPK--IAKANLFQDLPISEQTL 53
M+K +K+ N Q +KL ++++ + + K NP A F+ L ++E +
Sbjct: 15 MSKSRKNPKTVVNIQSQKLDSDQNTPQFE----KFTNPNPSSDTTSATNFEGLGLAEWAV 70
Query: 54 KGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDG 113
+ KE K T +Q +P L G DVLG A+TGSGKT AF +P++ +L + + G
Sbjct: 71 ETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPY----G 126
Query: 114 LGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDV-TFEKERISRINILIGTPGR 172
+ AL+++PTRELA Q+ E +G +++GG D+ T +SR +I+I TPGR
Sbjct: 127 VFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGR 186
Query: 173 I--LQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQ 230
I L + V S + LVLDEADR LD+GF+ L I LP SRQTLLFSAT +
Sbjct: 187 IKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTS 246
Query: 231 SLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS 290
+L L S E L T ++L Q +I D ++ I S ++
Sbjct: 247 NLQALLEHSSNKAYFYEAYEGLK------TVDTLTQQFIFED-KDAKELYLVHILSQMED 299
Query: 291 KLI----VFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLF 346
K I +F+S+ + + +L+ + + +H Q+ R L KF + L
Sbjct: 300 KGIRSAMIFVSTCRTCQRLSLMLDELE--VENIAMHSLNSQSMRLSALSKFKSGKVPILL 357
Query: 347 STDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP--------- 397
+TDV +RG+D P+VD VI D P D Y+HRVGR AR G+ G ++ ++T
Sbjct: 358 ATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKI 417
Query: 398 EEEEG-----FLKRLKTKNIEPSRLN 418
EEE G + K++ T ++E ++++
Sbjct: 418 EEEVGKKMEPYNKKVITDSLEVTKVS 443
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 191 bits (486), Expect = 3e-48
Identities = 123/364 (33%), Positives = 190/364 (51%), Gaps = 14/364 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F DL I E +K +E + TE+QR+ IP L G DV+ ++TGSGKTLAF++P++
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS- 161
L ++ + L+++PTREL+ QI E + + T L++GG + + ++S
Sbjct: 63 LLQKNRS----FYCLVVAPTRELSSQIAECFNMF-QATGLRVCLLVGGANFNVQANQLSK 117
Query: 162 RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
R ++++GTPGRI +H+ + F T ++ VLDEADR + F L+ II +L RQT
Sbjct: 118 RPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQT 177
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
LLF+AT S + L+ L K + T E T +L++ Y+ V + K L
Sbjct: 178 LLFTATMSDEISKLSSSILKRPKTIRTAE------KYETVPALKEYYLFVAMKWKNSALV 231
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
++ +IVF+S + +L G LHG Q R E + F ++
Sbjct: 232 ELLEMSQGMSVIVFVSMCVTARVMSLALARL--GFCSEALHGELSQEKREEAMRSFKESR 289
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L TD+ +RG+D VD VI D P+ YIHRVGR AR G+ G ++ ++T + E
Sbjct: 290 FNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVE 349
Query: 402 GFLK 405
K
Sbjct: 350 QIQK 353
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 191 bits (485), Expect = 4e-48
Identities = 145/441 (32%), Positives = 221/441 (49%), Gaps = 41/441 (9%)
Query: 3 KKQKHNTQQRKLIRERDSQKI--KDLETKVEEYNPK-IAKANLFQDLPISEQTLKGLKEA 59
+K KH + E D I K LE+ K KA+ FQ + +++ L+ + +
Sbjct: 28 QKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKK 87
Query: 60 AFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALII 119
F T IQR++IPL L+G DV+G A+TGSGKT AF+IP+IE L + ALI+
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL--KSTLANSNTRALIL 145
Query: 120 SPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS-RINILIGTPGRILQHMD 178
SP RELA+Q +V+ K T + ++GG + + +S + +I++ TPGR L H+
Sbjct: 146 SPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLK 204
Query: 179 QAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARL 238
+ S+++ +V DEADR +MGF L I++ LP SRQTLLFSAT ++L D A+
Sbjct: 205 VEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKA 264
Query: 239 SL-------TDYKQVGTMEVLNANSSSATPE------SLQQSYIEVPLPDK--------- 276
L D + + ++ +A S T E + Q I++PL D
Sbjct: 265 GLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNV 324
Query: 277 ---------LDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQ 327
L++ +S +VF+ + V +V E +Q G S+ ++G Q
Sbjct: 325 NNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELL--VQAGYSVSKIYGSLDQ 382
Query: 328 TARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGK 387
AR ++ F + L TDV +RGID P + VI D P ++HRVGR AR G+
Sbjct: 383 EARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGR 442
Query: 388 EGKSLIMLTPEEEEGFLKRLK 408
G + L E+ G+L L+
Sbjct: 443 TGWA-YSLVRAEDAGYLLDLQ 462
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 191 bits (485), Expect = 4e-48
Identities = 123/359 (34%), Positives = 194/359 (53%), Gaps = 13/359 (3%)
Query: 42 LFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIE 101
+FQD + L+ + + F + T IQ + P++LKG D++G A+TGSGKTLA+L+P +
Sbjct: 139 MFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALV 198
Query: 102 KLYRE-KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI 160
+ + + DG LI++PTRELA+QI E K G + + + GG + +
Sbjct: 199 HVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDL 258
Query: 161 SR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR 219
R + I+I TPGR++ M + N + LVLDEADR LDMGF+ + I++ + R
Sbjct: 259 RRGVEIVIATPGRLID-MLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 317
Query: 220 QTLLFSATQSQSLDDLARLSLTD-YKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278
QTLL+SAT + ++ LAR L D YK + L AN +S+ Q VP P+K +
Sbjct: 318 QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKAN------QSINQVIEIVPTPEKYN 371
Query: 279 ILFSFIKSHLK-SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
L + +K + SK+++F+ + + V R G + +HG + Q+ R L +F
Sbjct: 372 RLLTLLKQLMDGSKILIFVETKRGCDQVTRQLR--MDGWPALAIHGDKTQSERDRVLAEF 429
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
+ + +TDV ARG+D + V+ D P ++ YIHR+GR R G +G + T
Sbjct: 430 KSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFT 488
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 190 bits (483), Expect = 6e-48
Identities = 184/643 (28%), Positives = 280/643 (42%), Gaps = 136/643 (21%)
Query: 4 KQKHNTQQRKLIRERDSQKIKDLETKVEEY---------------NPKIA--KANLFQDL 46
+ HNTQ R L DSQ + L T E NP A K + F L
Sbjct: 91 RNAHNTQGRTL--PADSQFVSSLFTSNREITTAVNTNIHDENVAINPSNAPLKGDQFASL 148
Query: 47 PISEQTLKGLKEAAFIKL-TEIQRESIPLSLKG---HDVLGAAKTGSGKTLAFLIPVIEK 102
+S + L++ IK T IQ+++IP + +D A+TGSGKTL++L+P+I
Sbjct: 149 GVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIIST 208
Query: 103 LYREKWTDMD---GLGALIISPTRELAMQIYEVLSKIGKHTTFSAG-LVIGGKDVTFEKE 158
+ T +D G AL+I+PTRELA QIY V S + + L+IGG+ EK
Sbjct: 209 ILNMD-THVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKA 267
Query: 159 RISR-INILIGTPGRILQHMDQAVGFN---TSNLQLLVLDEADRCLDMGFKRTLDAIIN- 213
R+ + N +IGTPGR+L H+ + +L+ +VLDE D+ +++GF T+ II
Sbjct: 268 RLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKI 327
Query: 214 ------------NLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATP 261
LP +L SAT + ++ L ++L DYK + +++ + P
Sbjct: 328 VHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAP 387
Query: 262 ESLQQSYIEVPLPDKL--------DILFSFIKSHLKSK---LIVFLSSSKQVHFVYETFR 310
+ L Q VP +L +I FI S +SK IVF+S S V F Y+ F
Sbjct: 388 DQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFS 447
Query: 311 -----------------------------KLQPGISLMHLHGRQKQTARTETLDKFSR-- 339
P + + LHG Q RT TL F+R
Sbjct: 448 GSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDN 507
Query: 340 ----AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIML 395
+H+ +F TDV +RG+D P V VI++D P V+ ++HRVGR AR G++G+SL+ L
Sbjct: 508 EATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESLLFL 567
Query: 396 TPEEEEGFL-----------------KRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKD 438
P EEE ++ K + + +N D
Sbjct: 568 LPGEEEKYMDYIQPYHPMGWELLKFDKEILMPAFKDVNVNRNDKFIRKDEKSSKNKDVGD 627
Query: 439 PE-----------------------LKYLGQKAFISYVR--SIYIQKDKEVFHFDKIPLE 473
E K L K FIS+VR + +I ++K+ F+ + L
Sbjct: 628 KEYEWDTNATTWHLNIERRVVGDSAFKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLG 687
Query: 474 QFANSLGLPGAPK-IKMRGMK--SIEKAKELKNTSRQLLTLAK 513
A S GL PK + ++ K + EK +N+ ++ +A+
Sbjct: 688 HLAKSFGLRERPKAMGLQSSKDGNSEKKPTKENSKNKMFRMAR 730
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 190 bits (483), Expect = 6e-48
Identities = 127/392 (32%), Positives = 210/392 (53%), Gaps = 24/392 (6%)
Query: 24 KDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLG 83
KDL K + K N F+D + + L G+ E + K + IQ ESIP++L G D+L
Sbjct: 70 KDLRIKTSDVTS--TKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 127
Query: 84 AAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFS 143
AK G+GK+ A+LIP++E+L +K D + A++I PTRELA+Q+ ++ ++ KH +
Sbjct: 128 RAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQICIQVSKHMGGA 183
Query: 144 AGL-VIGGKDVTFEKERI-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD 201
+ GG ++ + R+ ++++I TPGRIL + + V ++Q++VLDEAD+ L
Sbjct: 184 KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLS 242
Query: 202 MGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATP 261
F + ++ II LP +RQ LL+SAT S+ L ++ ME L T
Sbjct: 243 QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEEL-------TL 295
Query: 262 ESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHL 321
+ + Q Y V K+ L + ++ I+F +SS++V + + +L G S ++
Sbjct: 296 KGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQL--GYSCFYI 353
Query: 322 HGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGR 381
H + +Q R F L TD+ RGID +V+ VI D P+ +TY+HR+GR
Sbjct: 354 HAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGR 413
Query: 382 AARFGKEGKSLIMLTPEEEEGFLKRLKTKNIE 413
+ RFG G ++ ++T ++ R K+IE
Sbjct: 414 SGRFGHLGLAINLITYDD------RFNLKSIE 439
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 183 bits (465), Expect = 8e-46
Identities = 119/376 (31%), Positives = 201/376 (52%), Gaps = 19/376 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D + L G+ E + K + IQ SI ++L G D+L AK G+GKT A+ IPVIEK
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS- 161
+ + + A++I PTRELA+Q ++ ++ KH + GG D+ + R++
Sbjct: 105 IQPA----LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNG 160
Query: 162 RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
++++I TPGRIL M++ V + + LVLDEAD+ L F+ LD +IN LP RQ
Sbjct: 161 TVHLVIATPGRILDLMEKGVA-KMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQV 219
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
+L+SAT ++ + + ++ ME L T + Q Y V K+ L
Sbjct: 220 MLYSATFPNTVTSFMQKHMHKPYEINLMEEL-------TLLGVTQYYAFVQEKQKVHCLN 272
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
+ + ++ I+F +S+++V + + ++ G S ++H + Q R F +
Sbjct: 273 TLFRKLQINQSIIFCNSTQRVELLAKKITEI--GYSCYYIHSKMAQNHRNRVFHDFRQGN 330
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L +D++ RGID +V+ VI D P + +TY+HR+GR+ RFG G ++ ++T E+
Sbjct: 331 CRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRH 390
Query: 402 GFLKRLKTK---NIEP 414
L+R++ + IEP
Sbjct: 391 -TLRRIEQELRTRIEP 405
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 183 bits (464), Expect = 1e-45
Identities = 122/359 (33%), Positives = 187/359 (51%), Gaps = 16/359 (4%)
Query: 39 KANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP 98
+AN FQ L + +K L + T IQ++ IP L G D +GAAKTGSGKT AF +P
Sbjct: 5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP 64
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
++E+L E + AL+++PT ELA QI E G+ +V GG D E +
Sbjct: 65 ILERLSEEPVSHF----ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQ 120
Query: 159 RI-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
++ R +I++ PGR+ H+ F+ NL+ LV+DEADR L+ F +L I LP
Sbjct: 121 KLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPK 180
Query: 218 SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL 277
+RQ L FSAT + + + + + +S AT E+L Q Y+ D+
Sbjct: 181 TRQNLFFSATMKDFIKESSIFPIAS-----DCFEWSQDSDVATVETLDQRYLLCADYDRD 235
Query: 278 DILFSFIKSHLK----SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTET 333
+L ++ + + + +++F ++ K + T + ++ I + LHG +Q R
Sbjct: 236 MVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME--IDNVCLHGFMRQKERVAA 293
Query: 334 LDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSL 392
L +F Q L +TDV ARG+D PSV+ V+ P YIHRVGR AR G++G S+
Sbjct: 294 LSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSI 352
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 182 bits (462), Expect = 2e-45
Identities = 124/369 (33%), Positives = 199/369 (53%), Gaps = 23/369 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F +L +S + +GLK + + T IQ + P L G DV+G A+TGSGKT+AF IP ++
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ- 225
Query: 103 LYREKWTDMDGLG-ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
Y +D + L++SPTRELA+Q YE L+ + + T A +V GG + +
Sbjct: 226 -YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK 284
Query: 162 RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP----- 216
+++IGTPGR+L ++ + S + LVLDEADR LD GF++ + II++ P
Sbjct: 285 NASVIIGTPGRLLDLINDG-SIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRN 343
Query: 217 ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDK 276
SRQT+ FSAT +S+ LA L D ++ + ++ +A+ Q I K
Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKI----TIGSDELAASQNITQIVEILDDPRSK 399
Query: 277 LDILFSFIKSHLKS-----KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
+L + ++ HL S K+++F+ K+ V T + +++ +HG Q AR
Sbjct: 400 ERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKY---NVVGIHGDMSQGARL 456
Query: 332 ETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKS 391
+ L+ F + L +TDV ARG+D P V VI V P ++ Y+HR+GR R +G +
Sbjct: 457 QALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTA 516
Query: 392 LIMLTPEEE 400
+ TP+++
Sbjct: 517 ITFFTPQDK 525
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 182 bits (462), Expect = 2e-45
Identities = 127/437 (29%), Positives = 215/437 (49%), Gaps = 50/437 (11%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKDLETKV--EEYNPKIAKANL------FQDLPISEQTLK 54
KK+K + R ++ ++ D + ++ E++N I + +++ ++ +
Sbjct: 255 KKEKKVAHDDRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQ 314
Query: 55 GLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI------EKLYREKW 108
+KE +++ T IQR++IP+ L+ DV+G A+TGSGKT AFL+P++ K+ R++
Sbjct: 315 AVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEH 374
Query: 109 TDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILI 167
D+ G A+I++PTRELA QI E +K GK VIGG + ++ + ++I
Sbjct: 375 RDL-GPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVI 433
Query: 168 GTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS--------- 218
TPGR+L ++ + ++LDEADR LDMGF+ + ++ +P +
Sbjct: 434 ATPGRLLDVLENRY-LLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEF 492
Query: 219 ----------------RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPE 262
RQT++F+AT S +++ LAR L V++ S+ E
Sbjct: 493 DNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLR------RPAVVHIGSAGKPTE 546
Query: 263 SLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q VP K L ++S + +I+F++ K + + KL G LH
Sbjct: 547 RVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKL--GFKPTVLH 604
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G + Q R L L +TDV RGID V V+ D + ++ Y HR+GR
Sbjct: 605 GGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRT 664
Query: 383 ARFGKEGKSLIMLTPEE 399
R GK GK++ LTP++
Sbjct: 665 GRAGKHGKAITFLTPDD 681
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 182 bits (462), Expect = 2e-45
Identities = 127/437 (29%), Positives = 215/437 (49%), Gaps = 50/437 (11%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKDLETKV--EEYNPKIAKANL------FQDLPISEQTLK 54
KK+K + R ++ ++ D + ++ E++N I + +++ ++ +
Sbjct: 255 KKEKKVAHDDRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQ 314
Query: 55 GLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI------EKLYREKW 108
+KE +++ T IQR++IP+ L+ DV+G A+TGSGKT AFL+P++ K+ R++
Sbjct: 315 AVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEH 374
Query: 109 TDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILI 167
D+ G A+I++PTRELA QI E +K GK VIGG + ++ + ++I
Sbjct: 375 RDL-GPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVI 433
Query: 168 GTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS--------- 218
TPGR+L ++ + ++LDEADR LDMGF+ + ++ +P +
Sbjct: 434 ATPGRLLDVLENRY-LLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEF 492
Query: 219 ----------------RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPE 262
RQT++F+AT S +++ LAR L V++ S+ E
Sbjct: 493 DNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLR------RPAVVHIGSAGKPTE 546
Query: 263 SLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q VP K L ++S + +I+F++ K + + KL G LH
Sbjct: 547 RVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKL--GFKPTVLH 604
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G + Q R L L +TDV RGID V V+ D + ++ Y HR+GR
Sbjct: 605 GGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRT 664
Query: 383 ARFGKEGKSLIMLTPEE 399
R GK GK++ LTP++
Sbjct: 665 GRAGKHGKAITFLTPDD 681
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 182 bits (462), Expect = 2e-45
Identities = 120/382 (31%), Positives = 196/382 (50%), Gaps = 21/382 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI-- 100
F+++ + L GL T IQ + +P L G D++G A TGSGKTL F++PVI
Sbjct: 179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 238
Query: 101 --EKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTT------FSAGLVIGGKD 152
E+ Y + +G LII P+RELA Q +E++ KH + L +GG
Sbjct: 239 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP 298
Query: 153 VTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAI 211
V+ + ISR ++I++ TPGR++ +D+ + + L +DEADR +DMGF+ + I
Sbjct: 299 VSEALDVISRGVHIVVATPGRLMDMLDKKI-LTLDMCRYLCMDEADRMIDMGFEEDVRTI 357
Query: 212 INNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV 271
+ RQTLLFSAT + + + AR +L K V +N + A ++ Q V
Sbjct: 358 FSFFKGQRQTLLFSATMPKKIQNFARSALV--KPV----TINVGRAGAASMNVTQQVEYV 411
Query: 272 PLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
K+ L ++ +++F + V ++E L G+ + +HG + Q R+
Sbjct: 412 KQEAKVVYLLDCLQK-TAPPVLIFAEKKQDVDCIHEYL--LLKGVEAVAIHGGKDQEERS 468
Query: 332 ETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKS 391
+D + + L +TDV ++G+DFP+V VI D P+D++ Y+HR+GR R +G +
Sbjct: 469 RAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLA 528
Query: 392 LIMLTPEEEEGFLKRLKTKNIE 413
++ E+ L LK IE
Sbjct: 529 TTLINKTTEQSVLLDLKHLLIE 550
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 182 bits (461), Expect = 2e-45
Identities = 115/291 (39%), Positives = 174/291 (59%), Gaps = 10/291 (3%)
Query: 46 LPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYR 105
+P+ Q L L+E F +T +Q +IPL ++ DV A TGSGKTLAF+IP++E L R
Sbjct: 14 VPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLR 73
Query: 106 -EKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH-TTFSAGLVIGGKDVTFEKERISRI 163
E+ +GA+II+PTRELA+QI EVLS KH FS L IGG++ + ER +
Sbjct: 74 REEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQ 133
Query: 164 --NILIGTPGRILQHMDQ-AVGFNTSN----LQLLVLDEADRCLDMGFKRTLDAIINNLP 216
NI++ TPGR+ + A G + ++ L +LVLDEADR LDMGF+ +++ I+ LP
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 217 ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEV-LNANSSSATPESLQQSYIEVPLPD 275
R+T LFSATQ+Q +++L R L + +V E + A+S+ TP L+ Y+ +
Sbjct: 194 KQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADE 253
Query: 276 KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQK 326
K + L F+++H + K +VF S+ V + + L G+ +M +HG+ K
Sbjct: 254 KFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMK 304
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 182 bits (461), Expect = 2e-45
Identities = 120/366 (32%), Positives = 190/366 (51%), Gaps = 23/366 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F EQ + ++++ + + T IQ + +P++L G D++G AKTGSGKT AF+ P++
Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195
Query: 103 LYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
+ +K + DG A+I+ PTREL QI+ + GK + V GG + + + +
Sbjct: 196 IMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 255
Query: 162 R-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
I++ TPGR++ H+ + N + LV DEADR DMGF+ + +I +++ RQ
Sbjct: 256 EGAEIVVCTPGRLIDHVKKKAT-NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 314
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDIL 280
TLLFSAT + ++ LAR L D + V+ + A + Q I P K +
Sbjct: 315 TLLFSATFRKKIEKLARDILID-----PIRVVQGDIGEANEDVTQIVEILHSGPSKWN-- 367
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRK-------LQPGISLMHLHGRQKQTARTET 333
L +L+ F SS + FV + Q G +L LHG Q+ R +
Sbjct: 368 ------WLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV 421
Query: 334 LDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLI 393
+ F + L +TDV ARG+D PS+ VI D D+DT+ HR+GR R G++G +
Sbjct: 422 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 481
Query: 394 MLTPEE 399
+LTP++
Sbjct: 482 LLTPKD 487
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 182 bits (461), Expect = 2e-45
Identities = 126/361 (34%), Positives = 186/361 (50%), Gaps = 12/361 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D S Q + +K+ A+ K T IQ +++P+ L G DV+G AKTGSGKT AF++P+I
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 103 LYREKWTDMD-GLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE-KERI 160
+ + D G +I +PTRELA QI+ K K V GG + KE
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349
Query: 161 SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
+ I++ TPGR++ M + LVLDEADR D+GF+ + +I+ + RQ
Sbjct: 350 AGCEIVVATPGRLID-MLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQ 408
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP-DKLDI 279
TLLFSAT ++ LAR L+D +V EV AN E + Q +P +KL
Sbjct: 409 TLLFSATMPWKVEKLAREILSDPIRVTVGEVGMAN------EDITQVVNVIPSDAEKLPW 462
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L + + ++ +S K E L + LHG + Q +R ETL KF
Sbjct: 463 LLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLN-SFKVAALHGDKDQASRMETLQKFKS 521
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFG-KEGKSLIMLTPE 398
H L +TDV ARG+D S+ V+ D +D+D ++HR+GR R G ++G + ++T
Sbjct: 522 GVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQR 581
Query: 399 E 399
E
Sbjct: 582 E 582
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 182 bits (461), Expect = 2e-45
Identities = 121/403 (30%), Positives = 208/403 (51%), Gaps = 14/403 (3%)
Query: 5 QKHNTQQRKLIRERDSQKIKDLETK--VEEYNPKIAK-ANLFQDLPISEQTLKGLKEAAF 61
+K+ Q I D +++++L V+ P K F EQ +K +++A +
Sbjct: 230 EKNFYTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEY 289
Query: 62 IKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDM-DGLGALIIS 120
+ T IQ +++P +L G D++G AKTGSGKT AF+ P++ + +K DG LI++
Sbjct: 290 TQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILA 349
Query: 121 PTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQ 179
PTREL++QIY K GK + GG + + + + I++ TPGR++ M +
Sbjct: 350 PTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMID-MVK 408
Query: 180 AVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLS 239
N + LVLDEADR MGF+ + +I N++ RQ L+FSAT + ++ LAR
Sbjct: 409 MKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDV 468
Query: 240 LTDYKQVGTMEVLNANSSSATPESLQQSYI-EVPLPDKLDILFSFIKSHLKSKLIVFLSS 298
L+D + ++ + + A + Q Y+ PL +L +K + +++F++
Sbjct: 469 LSD-----PVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTK 523
Query: 299 SKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFP 358
V L + + LHG Q R + + +F R + L +TDV ARG+D P
Sbjct: 524 KVDAETVSNNL--LIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIP 581
Query: 359 SVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
+ V+ D D++T+ HR+GR R G++G + ++T +++E
Sbjct: 582 HIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKE 624
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 181 bits (458), Expect = 5e-45
Identities = 124/389 (31%), Positives = 204/389 (51%), Gaps = 33/389 (8%)
Query: 27 ETKVEEYN------------PKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPL 74
+T+VEEY PK K+ F+D+ + L+ +K+A F + T IQ + P+
Sbjct: 75 DTEVEEYRKLREITVEGKDIPKPVKS--FRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPM 132
Query: 75 SLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKW-TDMDGLGALIISPTRELAMQIYEVL 133
++KG D++G A+TGSGKTL++L+P I + + DG L+++PTRELA+QI +
Sbjct: 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA 192
Query: 134 SKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQ--- 189
SK G + + GG + + + + I+I TPGR++ M+ N +NL+
Sbjct: 193 SKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMES----NNTNLRRVT 248
Query: 190 LLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTD-YKQVGT 248
LVLDEADR LDMGF + I++++ RQTL +SAT + ++ L++ L + YK +
Sbjct: 249 YLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIG 308
Query: 249 MEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLK-SKLIVFLSSSKQVHFVYE 307
L AN +++Q + K + L ++ + S+++VFL + K +
Sbjct: 309 SSDLKAN------RAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITR 362
Query: 308 TFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVD 367
R G + +HG + Q R L +F + + +TDV ARG+D V +VI D
Sbjct: 363 QLR--MDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD 420
Query: 368 CPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
P ++ Y+HR+GR R G +G + T
Sbjct: 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 181 bits (458), Expect = 5e-45
Identities = 117/362 (32%), Positives = 195/362 (53%), Gaps = 15/362 (4%)
Query: 39 KANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP 98
+ N F++ + + L G+ E + + + IQ +IP++L G DVL AK G+GKT A+ IP
Sbjct: 55 RGNEFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIP 114
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
V+E++ K D + AL++ PTRELA+Q ++ ++ KH + GG + +
Sbjct: 115 VLEQIDPTK----DYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDIL 170
Query: 159 RI-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
RI ++ ++I TPGRIL MD+ V + S+ ++LVLDEAD+ L + F+ LD +I LP
Sbjct: 171 RIYQKVQLIIATPGRILDLMDKKVA-DMSHCRILVLDEADKLLSLDFQGMLDHVILKLPK 229
Query: 218 SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL 277
Q LLFSAT ++ + L + ++ ME L T + + Q Y V K+
Sbjct: 230 DPQILLFSATFPLTVKNFMEKHLREPYEINLMEEL-------TLKGVTQYYAFVQERQKV 282
Query: 278 DILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
L + ++ I+F +S+++V + + +L G ++H + Q R F
Sbjct: 283 HCLNTLFSKLQINQSIIFCNSTQRVELLAKKITEL--GYCCYYIHAKMAQAHRNRVFHDF 340
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
+ L +D+ RGID +V+ VI D P +TY+HR+GR+ RFG G ++ ++T
Sbjct: 341 RQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITY 400
Query: 398 EE 399
E+
Sbjct: 401 ED 402
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 180 bits (457), Expect = 6e-45
Identities = 129/439 (29%), Positives = 226/439 (51%), Gaps = 31/439 (7%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKDLET-------KVEEYNPKIAKANLFQDLPISEQTLKG 55
+ + N++ R RE D + D T E+ + ++ +L ++ + ++ K
Sbjct: 61 RNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKA 120
Query: 56 LKEAAFIKLTEIQRESIP--LSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDG 113
+ F LT +Q+++I LS + HDV+ AKTG+GKT AFLIP+ + L K+
Sbjct: 121 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYM 180
Query: 114 LGALIISPTRELAMQIYEVLSKIGKHT----TFSAGLVIGGKDVTFEKERISRI--NILI 167
+ A+I++PTR+LA+QI + KI ++ ++GG D +++++ NI+I
Sbjct: 181 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVI 240
Query: 168 GTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFK---RTLDAIINNLPASR----Q 220
TPGR++ +++ + VLDEADR L++GF+ T+ I+N + +
Sbjct: 241 ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIK 300
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDIL 280
TLLFSAT + LA ++ + K+ ++ ++ N A Q I + +
Sbjct: 301 TLLFSATLDDKVQKLAN-NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAA 359
Query: 281 FSFIKSHLKS-----KLIVFLSSSKQVHFVYETFR-KLQPGISLMHLHGRQKQTARTETL 334
IK +K K I+F + K F+ + + + + ++ HG+ Q RT +
Sbjct: 360 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 419
Query: 335 DKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM 394
+F + + L TDV ARG+DFP+V V+Q+ P ++ YIHR+GR AR GKEG S++
Sbjct: 420 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 479
Query: 395 LTPEEEEGFLKRLK-TKNI 412
+ ++E F++ L+ KNI
Sbjct: 480 IC-KDELPFVRELEDAKNI 497
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 180 bits (456), Expect = 8e-45
Identities = 119/382 (31%), Positives = 207/382 (54%), Gaps = 20/382 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ +SE L+G+ F K + IQ+ +I +KG+DV+ A++G+GKT F I ++++
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
+ D+ AL+++PTRELA QI +V+ +G + S IGG +V E +++
Sbjct: 94 IE----LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 149
Query: 163 I--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
+I++GTPGR+ +++ + +++ VLDEAD L GFK + I L ++ Q
Sbjct: 150 EAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 208
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+L SAT + ++ + + D + +L T E ++Q YI V + KLD
Sbjct: 209 VVLLSATMPSDVLEVTKKFMRD-----PIRIL-VKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L ++ ++ ++F+++ ++V ++ E +S MH G Q R + +F
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH--GDMDQKERDVIMREFRS 320
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + + YIHR+GR RFG++G ++ M+T EE
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT-EE 379
Query: 400 EEGFLKRLKT---KNIEPSRLN 418
++ L+ ++T +IE LN
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 180 bits (456), Expect = 8e-45
Identities = 119/346 (34%), Positives = 185/346 (53%), Gaps = 11/346 (3%)
Query: 56 LKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDM-DGL 114
L + F + T IQ + PL+L G D++G A+TGSGKTLA+L+P I + + + + DG
Sbjct: 107 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGP 166
Query: 115 GALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRI 173
L+++PTRELA Q+ +V GK + + + GG + + R + I I TPGR+
Sbjct: 167 ICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 226
Query: 174 LQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLD 233
+ ++ N LVLDEADR LDMGF+ + I++ + RQTL++SAT + +
Sbjct: 227 IDFLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 285
Query: 234 DLARLSLTDYKQ--VGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK 291
LA L DY Q VG +E L+AN + + +E KL L I + ++K
Sbjct: 286 QLAEDFLRDYTQINVGNLE-LSANHNIL---QIVDVCMESEKDHKLIQLMEEIMAEKENK 341
Query: 292 LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVV 351
I+F+ + ++ + T R + G M +HG + Q R L++F + L +TDV
Sbjct: 342 TIIFVETKRRCDDL--TRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVA 399
Query: 352 ARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
+RG+D V +VI D P + Y+HR+GR AR +G + TP
Sbjct: 400 SRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 179 bits (454), Expect = 1e-44
Identities = 120/386 (31%), Positives = 209/386 (54%), Gaps = 25/386 (6%)
Query: 16 RERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLS 75
RE D QK+K +K K+ ++ F+ + + + L+G+ F + IQ +I
Sbjct: 5 REED-QKLKFKTSK------KLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQI 57
Query: 76 LKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSK 135
+ G DV+ A++G+GKT F I +++ + K L ALI+SPTRELA QI +V+
Sbjct: 58 ISGKDVIAQAQSGTGKTATFTIGLLQAIDLRK----KDLQALILSPTRELASQIGQVVKN 113
Query: 136 IGKHTTFSAGLVIGGKDVTFEKERISR--INILIGTPGRILQHMDQAVGFNTSNLQLLVL 193
+G + +A + GGK + + +++ + + GTPGR+L + + + T N+Q+LVL
Sbjct: 114 LGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVL 172
Query: 194 DEADRCLD--MGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEV 251
DEAD L +GFK+ + I LP + Q ++ SAT ++ + ++ R + D +++
Sbjct: 173 DEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMND-----PVKI 227
Query: 252 LNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFR 310
L + E ++Q + V + K D L S ++ ++F ++ K+V ++ + R
Sbjct: 228 L-VKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQ--R 284
Query: 311 KLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPE 370
+Q +++ +HG KQ R + ++ F L STDV ARGID V VI D PE
Sbjct: 285 LIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPE 344
Query: 371 DVDTYIHRVGRAARFGKEGKSLIMLT 396
++ YIHR+GR+ RFG++G ++ +T
Sbjct: 345 IIENYIHRIGRSGRFGRKGVAINFIT 370
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 179 bits (454), Expect = 1e-44
Identities = 118/363 (32%), Positives = 194/363 (52%), Gaps = 21/363 (5%)
Query: 57 KEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI----EKLYREKWTDMD 112
K+ + T IQ + IP++L G D++G A TGSGKT+ F++P++ E+ + + +
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSE 265
Query: 113 GLGALIISPTRELAMQIY----EVLSKIGKH--TTFSAGLVIGGKDVTFEKERI-SRINI 165
G LII P+RELA QI+ E+ +GK AGL IGG + + + + I+I
Sbjct: 266 GPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHI 325
Query: 166 LIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFS 225
++ TPGR+ + + + N + LVLDEADR LDMGF+ + +I A RQTLLFS
Sbjct: 326 VVATPGRLSDMLTKKI-INLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFS 384
Query: 226 ATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIK 285
AT + + A+ +L K + V+N + A ++ Q V +KL + ++
Sbjct: 385 ATMPRKIQFFAKSALV--KPI----VVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQ 438
Query: 286 SHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCL 345
K+++F V +YE L G+ + +HG + Q+ R ++ F + + L
Sbjct: 439 K-TSPKVLIFAEKKVDVDNIYEYL--LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVL 495
Query: 346 FSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK 405
+TDV ++G+DF ++ VI D PED++ Y+HR+GR R G++G + + + E L
Sbjct: 496 VATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLS 555
Query: 406 RLK 408
LK
Sbjct: 556 DLK 558
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 178 bits (452), Expect = 2e-44
Identities = 117/363 (32%), Positives = 186/363 (51%), Gaps = 25/363 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F P+ E ++ +K A+F K T +Q+ SIP+ KG D++ A+TGSGKT FL P+ +
Sbjct: 156 FSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTE 215
Query: 103 LYR----------EKWTDMDGL-GALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGK 151
L+R + + G AL+++PTRELA QI+E K + +V GG
Sbjct: 216 LFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGA 275
Query: 152 DVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDA 210
+ + + R ++L+ TPGR+ +++ + +N++ LVLDEADR LDMGF+ +
Sbjct: 276 PIGNQMREVDRGCDLLVATPGRLNDLLERGK-VSLANIKYLVLDEADRMLDMGFEPQIRH 334
Query: 211 IIN--NLPA--SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQ 266
I+ ++P+ +RQTL+FSAT + LAR L +Y L+ +T E++ Q
Sbjct: 335 IVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYI------FLSVGRVGSTSENITQ 388
Query: 267 SYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQK 326
+ V DK L + + K ++F+ + + + + + +HG +
Sbjct: 389 RILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFL--IMQNFKATAIHGDRT 446
Query: 327 QTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFG 386
Q R L F L +T V ARG+D P+V VI D P D+D Y+HR+GR R G
Sbjct: 447 QAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAG 506
Query: 387 KEG 389
G
Sbjct: 507 NTG 509
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 178 bits (451), Expect = 3e-44
Identities = 117/362 (32%), Positives = 182/362 (49%), Gaps = 16/362 (4%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREK 107
+S QT+ + + K T IQ ++IP G DV+G AKTGSGKT+AFL+P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 108 WTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INI 165
+G A+I++PTRELA+QI+ K A GG + + + R I
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 166 LIGTPGRILQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLL 223
++ TPGR++ + G N LVLDEADR D+GF+ + IINN+ RQT+L
Sbjct: 545 VVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVL 604
Query: 224 FSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDK----LDI 279
FSAT ++++ LAR L ++ S ++Q P K L++
Sbjct: 605 FSATFPRAMEALARKVLKKPVEI------TVGGRSVVASEVEQIVEVRPEESKFSRLLEL 658
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L + L + +VF+ + + K G + +HG + Q R T+ +
Sbjct: 659 LGELYNNQLDVRTLVFVDRQESADALLSDLMKR--GYTSNSIHGGKDQHDRDSTISDYKA 716
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +T VVARG+D S+ V+ DCP ++ Y+HRVGR R G G ++ +TPE+
Sbjct: 717 GVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQ 776
Query: 400 EE 401
E+
Sbjct: 777 EK 778
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 178 bits (451), Expect = 3e-44
Identities = 120/374 (32%), Positives = 195/374 (52%), Gaps = 15/374 (4%)
Query: 27 ETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAK 86
+T+ + + K N F+D + LKG+ E F K + IQ ESIP++L G D+L AK
Sbjct: 110 DTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAK 169
Query: 87 TGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGL 146
G+GKT AF IPV+EK+ + + + A+I+ PTRELA+Q +V ++ K+ +
Sbjct: 170 NGTGKTGAFCIPVLEKID----PNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMV 225
Query: 147 VIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFK 205
GG + + R+ + +++L+GTPGRIL + V + +LV+DEAD+ L F+
Sbjct: 226 TTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCV-LKDCAMLVMDEADKLLSAEFQ 284
Query: 206 RTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQ 265
+L+ +I LP +RQ L+FSAT ++ L + M+ L T +
Sbjct: 285 PSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQL-------TLMGVT 337
Query: 266 QSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQ 325
Q Y V K+ L + ++ I+F +S +V + + +L G S ++H +
Sbjct: 338 QYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKM 395
Query: 326 KQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARF 385
Q R +F L TD+ RGID +V+ VI D P ++Y+HRVGR+ RF
Sbjct: 396 VQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 455
Query: 386 GKEGKSLIMLTPEE 399
G G ++ ++T E+
Sbjct: 456 GHLGLAVNLVTYED 469
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 176 bits (447), Expect = 9e-44
Identities = 118/367 (32%), Positives = 189/367 (51%), Gaps = 18/367 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+ L +S+ + L+ + T IQ+ IP L+G D +G AKTGSGKT+AF P++ K
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 103 LYREKWT-DMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
W+ D G+ ++++PTRELAMQI E + +G +++GG+ + + +
Sbjct: 64 -----WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQ 118
Query: 162 RI-NILIGTPGRILQHM----DQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP 216
R + +I TPGR+ H+ D VG + LVLDEAD L F L I+ LP
Sbjct: 119 RKPHFIIATPGRLAHHIMSSGDDTVG-GLMRAKYLVLDEADILLTSTFADHLATCISALP 177
Query: 217 AS--RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP 274
RQTLLF+AT + + L + K + + + A P +L+ YI VP
Sbjct: 178 PKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEH 237
Query: 275 DKLDILFSFI--KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTE 332
K L+ + + + I+F++ + + T ++L+ + + LH + Q RT
Sbjct: 238 VKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLE--VRVASLHSQMPQQERTN 295
Query: 333 TLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSL 392
+L +F L +TDV +RG+D P+V+ V+ D P D D +IHR GR AR G+ G ++
Sbjct: 296 SLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAI 355
Query: 393 IMLTPEE 399
+T +
Sbjct: 356 SFVTQRD 362
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 176 bits (447), Expect = 9e-44
Identities = 116/395 (29%), Positives = 199/395 (50%), Gaps = 17/395 (4%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFI 62
K + N R+ + + + D+ K E+ + F+D + + L G+ EA F
Sbjct: 8 KLENANLNDRESFKGQMKAQPVDMRPKTEDVTK--TRGTEFEDYYLKRELLMGIFEAGFE 65
Query: 63 KLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPT 122
+ + IQ ESIP++L G D+L AK G+GKT AF+IP +EK+ +K + LI+ PT
Sbjct: 66 RPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKK----SKIQTLILVPT 121
Query: 123 RELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS-RINILIGTPGRILQHMDQAV 181
RELA+Q +V +GKH + GG + + R++ ++I++GTPGR+L + V
Sbjct: 122 RELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGV 181
Query: 182 GFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLT 241
+ S V+DEAD+ L F ++ +++ P +RQ L+SAT + + L
Sbjct: 182 A-DFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLN 240
Query: 242 DYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQ 301
++ M+ L T + Q Y V K+ L + ++ I+F +S+ +
Sbjct: 241 KPYEINLMDEL-------TLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNR 293
Query: 302 VHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVD 361
V + + +L G S + H + Q+ R F L +D++ RGID +V+
Sbjct: 294 VELLAKKITEL--GYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVN 351
Query: 362 WVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
VI D P++ +TY+HR+GR+ RFG G ++ ++
Sbjct: 352 VVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 176 bits (447), Expect = 9e-44
Identities = 116/383 (30%), Positives = 198/383 (51%), Gaps = 31/383 (8%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
+++ ++ + LK ++ A + K + IQ +IPL L+ DV+G A+TGSGKT AF++P++
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374
Query: 103 LYR----EKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
+ R + + +G A++++PTRELA QI E K + F ++GG+ + +
Sbjct: 375 ISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGL 434
Query: 159 RISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
+I++ I+I TPGR++ +++ + +VLDEADR +DMGF+ + +++ +P+
Sbjct: 435 KITQGCEIVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPS 493
Query: 218 S-----------------RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSAT 260
S R T +FSAT ++ LAR K + V+ ++ T
Sbjct: 494 SNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLAR------KYLRNPVVVTIGTAGKT 547
Query: 261 PESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMH 320
+ + Q I + +K L + + IVF+++ K + + K G +
Sbjct: 548 TDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKA--GYRVTT 605
Query: 321 LHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVG 380
LHG + Q R +L+ F ++ L +TDVV RGID P V VI D P+ ++ Y HR+G
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIG 665
Query: 381 RAARFGKEGKSLIMLTPEEEEGF 403
R R GK G + LT + E F
Sbjct: 666 RTGRAGKSGVATSFLTLHDTEVF 688
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 176 bits (446), Expect = 1e-43
Identities = 177/712 (24%), Positives = 306/712 (42%), Gaps = 131/712 (18%)
Query: 39 KANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP 98
K F +S+ L +K F + T IQR++IPL L+ D++G A+TGSGKT AF++P
Sbjct: 135 KKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILP 194
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE-K 157
++EKL + + G A+I+SP+RELAMQ + V + T + L+ GG + +
Sbjct: 195 MVEKL--KSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFG 252
Query: 158 ERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
++ +++I TPGR L H+ + + +++ +V DEADR +MGF+ L+ ++ +LP
Sbjct: 253 MMMTNPDVIIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPT 311
Query: 218 SRQTLLFSATQSQSLDDLARLSL---------TDYKQVGTMEVLNANSSSATPES----L 264
+RQTLLFSAT SL D + L + K +E+L +S +A E+ +
Sbjct: 312 TRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYI 371
Query: 265 QQSYIEVPLP-----------------------DKLDILFSFIKSHLKSK---------- 291
Q I++PL D+ +F K + +
Sbjct: 372 LQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPS 431
Query: 292 ---LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFST 348
I+F+ + V ++ + R G + +++G Q AR L F L T
Sbjct: 432 EKATILFVPTRHHVEYISQLLRDC--GYLISYIYGTLDQHARKRQLYNFRAGLTSILVVT 489
Query: 349 DVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
DV ARG+D P + VI P ++HRVGR AR G +G + ++ E L
Sbjct: 490 DVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLL---- 545
Query: 409 TKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQK--------AFISYVRSIYIQK 460
D EL +LG+K + + ++ +I +
Sbjct: 546 -----------------------------DLEL-FLGKKILLTPMYDSLVDVMKKRWIDE 575
Query: 461 DKEVFHFDKIPLEQFANSLGLPGAPKIKMRGMKSIEK-----------AKELKNTSRQLL 509
K + F P + L L P++ + G+ + K AK+ + +L
Sbjct: 576 GKPEYQFQP-PKLSYTKRLVLGSCPRLDVEGLGDLYKNLMSSNFDLQLAKKTAMKAEKLY 634
Query: 510 TLAKANDEGDVIKENKPEVRTRYD--KMFERKNQTVLSEHYLNVTKAQAHDDEDEDFIMV 567
+ + + +K +K + + +D F KN+ +L K Q +++ F
Sbjct: 635 YRTRTSASPESLKRSKEIISSGWDAQNAFFGKNEEKEKLDFL--AKLQNRRNKETVFEFT 692
Query: 568 KRQDHEL---NEAELPELLVPTSKRAQKKALSRKATLASNGNPTKVKF---DDDGKAHPV 621
+ D E+ + +L K +++ L K +A +K+KF DD + V
Sbjct: 693 RNPDDEMAVFMKRRRKQLAPIQRKATERRELLEKERMAGLHILSKMKFWKGDDVETGYTV 752
Query: 622 YE--LEDEQDFRQ------NGNSEKQKEEFLSKEAELMAKV----DVEDKQV 661
E L++ +D Q N N +K+K + ++ D++DKQ+
Sbjct: 753 SEDALKEFEDAHQLLEAQENENKKKKKPKSFKDPTFFLSHYAPAGDIQDKQL 804
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 176 bits (446), Expect = 1e-43
Identities = 125/407 (30%), Positives = 210/407 (50%), Gaps = 26/407 (6%)
Query: 5 QKHNTQQRKLIRERDSQKIKDL--ETKVEEYNPKIAK-ANLFQDLPISEQTLKGLKEAAF 61
QK ++ + +R R ++ + E ++ + + K F++ LK +K+ F
Sbjct: 83 QKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGF 142
Query: 62 IKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDM-DGLGALIIS 120
T IQ+++ P+++ G D++G + TGSGKTL++ +P I + + DG L+++
Sbjct: 143 EAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLA 202
Query: 121 PTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE-KERISRINILIGTPGRILQHMDQ 179
PTRELA+QI + +K GK + V GG + ++ I + I I TPGR+L +D
Sbjct: 203 PTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDS 262
Query: 180 AVGFNTSNLQ---LLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLA 236
N +NL+ LVLDEADR LDMGF+ + I++ + RQT++FSAT + + LA
Sbjct: 263 ----NKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLA 318
Query: 237 RLSLTDYKQV--GTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLK---SK 291
R L DY QV G++++ A +++Q V DK L I+ LK +K
Sbjct: 319 RDYLNDYIQVTVGSLDL-------AASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNK 371
Query: 292 LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVV 351
+++F + + + R Q G + +HG + Q R L++F + + +TDV
Sbjct: 372 VLIFTGTKRVADDITRFLR--QDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVA 429
Query: 352 ARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398
+RGID + V D P + + Y+HR+GR R G +G + T +
Sbjct: 430 SRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD 476
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 176 bits (446), Expect = 1e-43
Identities = 121/380 (31%), Positives = 193/380 (49%), Gaps = 9/380 (2%)
Query: 36 KIAKANLFQDLPISEQTLKG-LKEAAFIKLTEIQRESIPLSLKGHD-VLGAAKTGSGKTL 93
K + LF ++ T K L A F K+T +Q+ + + + AKTG+GKTL
Sbjct: 32 KSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTL 91
Query: 94 AFLIPVIEKLYREK-WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKD 152
AFL+ + + + K + + ++I+SPTRELA+QI+E K+ T IGG
Sbjct: 92 AFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
Query: 153 VTFEKERISR--INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDA 210
E+ I R N+LI TPGR+ H+ + + +LDEADR +DMGF ++
Sbjct: 152 KMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILN 211
Query: 211 IINNLPASR-QTLLFSATQSQSLDDLARLSL-TDYKQVGTMEVLNANSSSATPESLQQSY 268
I + ++ + L FSAT + ++ R L TD+K + ++ + P+ + ++
Sbjct: 212 IHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETK 271
Query: 269 IEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQT 328
++ L +L S+ S++IVFL + V FV I LH
Sbjct: 272 LDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLEN-HLKIPCFILHSGLTTA 330
Query: 329 ARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKE 388
R + F + Q LF+TDVVARG+DFP++ V+Q+ P + D YIHR+GR R GK
Sbjct: 331 QRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKT 390
Query: 389 GKSLIMLTPEEEEGFLKRLK 408
G++ ++L E+E+ FL +K
Sbjct: 391 GEAYLILL-EQEKPFLNSIK 409
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 176 bits (446), Expect = 1e-43
Identities = 119/379 (31%), Positives = 195/379 (51%), Gaps = 15/379 (3%)
Query: 22 KIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDV 81
K+ + + + + K N F+D + L+G+ E F K + IQ ESIP++L G D+
Sbjct: 135 KLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDI 194
Query: 82 LGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTT 141
L AK G+GKT AF IP +EK+ E + + A+I+ PTRELA+Q +V ++ K+
Sbjct: 195 LARAKNGTGKTGAFCIPTLEKIDPEN----NVIQAVILVPTRELALQTSQVCKELSKYLK 250
Query: 142 FSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCL 200
+ GG + + R+ + +++L+GTPGRIL + V + +LV+DEAD+ L
Sbjct: 251 IEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCV-LKDCAMLVMDEADKLL 309
Query: 201 DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSAT 260
+ F+ +++ +I LP SRQ L+FSAT ++ L + M+ L T
Sbjct: 310 SVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQL-------T 362
Query: 261 PESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMH 320
+ Q Y V K+ L + ++ I+F +S +V + + +L G S +
Sbjct: 363 LMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFY 420
Query: 321 LHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVG 380
+H + Q R F L TD+ RGID +V+ VI D P ++Y+HRVG
Sbjct: 421 IHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 480
Query: 381 RAARFGKEGKSLIMLTPEE 399
R+ RFG G ++ ++T E+
Sbjct: 481 RSGRFGHLGLAVNLVTYED 499
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 176 bits (445), Expect = 2e-43
Identities = 114/358 (31%), Positives = 186/358 (51%), Gaps = 11/358 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F++ + + +++ F K T IQ + P+++ G D++G A+TGSGKTLA+++P +
Sbjct: 152 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 211
Query: 103 LYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
+ + + DG AL+++PTRELA QI +V + G +T + GG + +
Sbjct: 212 INNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLE 271
Query: 162 R-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
R + I+I TPGR++ +++ + LVLDEADR LDMGF+ + I+ + RQ
Sbjct: 272 RGVEIVIATPGRLIDFLERGTT-SLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 330
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYI--EVPLPDKLD 278
L++SAT + + LA L +Y QV + + S SA LQ + E KL
Sbjct: 331 VLMWSATWPKEVRQLAEEFLNNYIQVN----IGSLSLSANHNILQIVDVCDENEKLMKLI 386
Query: 279 ILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338
L + I + ++K I+F+ + K+V + + G +HG + Q R L F
Sbjct: 387 KLLTDISAENETKTIIFVETKKRVDEITRNISR--QGWRACAIHGDKSQQERDFVLSSFR 444
Query: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
+H L +TDV ARG+D V +VI D P + + Y+HR+GR R G + + T
Sbjct: 445 NGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFT 502
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 175 bits (443), Expect = 3e-43
Identities = 118/382 (30%), Positives = 191/382 (49%), Gaps = 21/382 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI-- 100
F+++ L+GLK+ T IQ + IP L G D++G A TGSGKTL F +PVI
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242
Query: 101 --EKLYREKWTDMDGLGALIISPTRELAMQIYEVLS------KIGKHTTFSAGLVIGGKD 152
E+ R ++ +G LII P+RELA Q + +L + L IGG
Sbjct: 243 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 302
Query: 153 VTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAI 211
V + E I +++++ TPGR++ + + + + + L LDEADR +DMGF+ + I
Sbjct: 303 VKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRTI 361
Query: 212 INNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV 271
+ RQTLLFSAT + + + A+ +L K V +N + A + Q V
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQNFAKSALV--KPV----TINVGRAGAASLDVIQEVEYV 415
Query: 272 PLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
K+ L ++ +++F V ++E L G+ + +HG + Q RT
Sbjct: 416 KEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYL--LLKGVEAVAIHGGKDQEERT 472
Query: 332 ETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKS 391
+ ++ F + L +TDV ++G+DFP++ VI D PE+++ Y+HR+GR R G G +
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532
Query: 392 LIMLTPEEEEGFLKRLKTKNIE 413
+ +E L LK +E
Sbjct: 533 TTFINKACDESVLMDLKALLLE 554
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 174 bits (441), Expect = 5e-43
Identities = 116/372 (31%), Positives = 184/372 (49%), Gaps = 25/372 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F P+ L+ +K A F K T +Q+ S+P+ G D++ A+TGSGKT FL PV+ +
Sbjct: 144 FTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSE 203
Query: 103 LYREKWTDM-DGLG----------ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGK 151
++ + + G A+I++PTRELA QI++ K + A +V GG
Sbjct: 204 SFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGS 263
Query: 152 DVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDA 210
+ + I R ++L+ TPGR+ +++ + +N++ LVLDEADR LDMGF+ +
Sbjct: 264 PIGNQLREIERGCDLLVATPGRLNDLLERGK-ISLANVKYLVLDEADRMLDMGFEPQIRH 322
Query: 211 IINNLPAS----RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQ 266
I+ + + RQTL+FSAT + LAR L+DY L+ +T E++ Q
Sbjct: 323 IVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYI------FLSVGRVGSTSENITQ 376
Query: 267 SYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQK 326
+ V DK L + + ++F+ + + + + + +HG +
Sbjct: 377 KVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL--IMQNFRATAIHGDRT 434
Query: 327 QTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFG 386
Q+ R L F L +T V ARG+D P+V VI D P DVD Y+HR+GR R G
Sbjct: 435 QSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAG 494
Query: 387 KEGKSLIMLTPE 398
G + E
Sbjct: 495 NTGLATAFFNSE 506
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 174 bits (441), Expect = 5e-43
Identities = 119/374 (31%), Positives = 190/374 (49%), Gaps = 40/374 (10%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ ++E + A + K T +Q+ +IP+ + G D++ A+TGSGKT AFL+P++ +
Sbjct: 297 FDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQ 356
Query: 103 LY---------------REKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLV 147
+Y R K + L+++PTRELA QI+E K + ++
Sbjct: 357 MYELGHVPPPQSTRQYSRRKQYPL----GLVLAPTRELATQIFEEAKKFAYRSRMRPAVL 412
Query: 148 IGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKR 206
GG + + + + R ++++ TPGR L+ M N++ LVLDEADR LDMGF+
Sbjct: 413 YGGNNTSEQMRELDRGCHLIVATPGR-LEDMITRGKVGLENIRFLVLDEADRMLDMGFEP 471
Query: 207 TLDAIIN--NLPAS--RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPE 262
+ I+ N+P + RQTL+FSAT + + +LA L++Y + V +T E
Sbjct: 472 QIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRV------GSTSE 525
Query: 263 SLQQSYIEVPLPDKLDILFSFIKS------HLKSKL-IVFLSSSKQVHFVYETFRKLQPG 315
++ Q+ + V PDK L + S + K L ++F+ + K + E +
Sbjct: 526 NITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHP 585
Query: 316 ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTY 375
++ +HG + Q R E L F L +T V ARG+D P V VI D P DV+ Y
Sbjct: 586 VT--SIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEY 643
Query: 376 IHRVGRAARFGKEG 389
+HR+GR R G G
Sbjct: 644 VHRIGRTGRMGNLG 657
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 174 bits (441), Expect = 5e-43
Identities = 116/360 (32%), Positives = 190/360 (52%), Gaps = 13/360 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F ++ + + +K ++ + T IQ + P+++ G + +G AKTGSGKTL +++P I
Sbjct: 141 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 200
Query: 103 LYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
+ ++ DG AL+++PTRELA QI +V ++ G + V GG + +
Sbjct: 201 INNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQ 260
Query: 162 R-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
R I+I TPGR++ + A N LVLDEADR LDMGF+ + I++ + RQ
Sbjct: 261 RGCEIVIATPGRLIDFLS-AGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 319
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278
TL++SAT + + LA L +Y Q+ G++E L+AN + + + + +KL
Sbjct: 320 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLE-LSANHNIRQVVDVCDEFSK---EEKLK 375
Query: 279 ILFSFI--KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDK 336
L S I S K+I+F+ + ++V + R G+ +HG + Q+ R L +
Sbjct: 376 TLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSF--GVRCGAIHGDKSQSERDFVLRE 433
Query: 337 FSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
F + L +TDV ARG+D + +VI D P++ + YIHR+GR R +G S T
Sbjct: 434 FRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFT 493
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 174 bits (440), Expect = 6e-43
Identities = 125/402 (31%), Positives = 193/402 (47%), Gaps = 33/402 (8%)
Query: 22 KIKDLETKVEEYNPKIA--KANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGH 79
K D E K+ + F + + E K + A + K T IQ+ ++PL +GH
Sbjct: 531 KFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGH 590
Query: 80 DVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGA-----LIISPTRELAMQIYEVLS 134
D++ A+TGSGKT AFL+P++ +L E + G G +I++PTREL QIY
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGR 650
Query: 135 KIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVL 193
K T V GG V + K +I + I++GT GRI +H + + VL
Sbjct: 651 KFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRI-KHFCEEGTIKLDKCRFFVL 709
Query: 194 DEADRCLD-MGFKRTLDAIIN--NLPA--SRQTLLFSATQSQSLDDLARLSLTDYKQVGT 248
DEADR +D MGF +D I+N ++P +RQTL+FSAT S+ + AR L +
Sbjct: 710 DEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKE-----G 764
Query: 249 MEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS------------KLIVFL 296
+L + A + + Q + + +K D L + + S K IVF+
Sbjct: 765 YIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFV 824
Query: 297 SSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGID 356
S + Q + + +HG ++Q R+E L +F L +T V RG+D
Sbjct: 825 SQRAMADTLASILSSAQ--VPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLD 882
Query: 357 FPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398
VD VI D P+++D YIHR+GR R G G++ ++ +
Sbjct: 883 IKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISED 924
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 173 bits (439), Expect = 8e-43
Identities = 124/397 (31%), Positives = 200/397 (50%), Gaps = 13/397 (3%)
Query: 5 QKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKL 64
Q+H R+ +E ++ + + E V +N N F + + + F +
Sbjct: 60 QEHPDLARRTAQEVETYR-RSKEITVRGHNCPKPVLN-FYEANFPANVMDVIARQNFTEP 117
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDM-DGLGALIISPTR 123
T IQ + P++L G D++G A+TGSGKTL++L+P I + + + + DG L+++PTR
Sbjct: 118 TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR 177
Query: 124 ELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVG 182
ELA Q+ +V ++ + + + GG + + R + I I TPGR++ ++
Sbjct: 178 ELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT 237
Query: 183 FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTD 242
N LVLDEADR LDMGF+ + I++ + RQTL++SAT + + LA L D
Sbjct: 238 -NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD 296
Query: 243 YKQVGTMEVLNANSSSATPESLQQSYI--EVPLPDKLDILFSFIKSHLKSKLIVFLSSSK 300
Y + + A SA LQ + +V +KL L I S ++K IVF+ + +
Sbjct: 297 YIHIN----IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352
Query: 301 QVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSV 360
+ + R+ G M +HG + Q R L++F + L +TDV +RG+D V
Sbjct: 353 RCDELTRKMRR--DGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 361 DWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
+VI D P + YIHR+GR AR K G + TP
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 173 bits (438), Expect = 1e-42
Identities = 130/429 (30%), Positives = 216/429 (50%), Gaps = 27/429 (6%)
Query: 5 QKHNTQQRKLIRERDSQKI----KDLETKVEEYN-PKIAKANLFQDLPISEQTLKGLKEA 59
+K+ + + +R+R +I K+ E + ++ PK F + + L +K
Sbjct: 74 EKNFYVEHESVRDRSDSEIAQFRKENEMTISGHDIPK--PITTFDEAGFPDYVLNEVKAE 131
Query: 60 AFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKW-TDMDGLGALI 118
F K T IQ + P++L G D++G A TGSGKTL++ +P I + + DG L+
Sbjct: 132 GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLV 191
Query: 119 ISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHM 177
++PTRELA+QI SK G + V GG + + +SR I+I TPGR++ +
Sbjct: 192 LAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML 251
Query: 178 DQAVG-FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLA 236
+ +G N + LVLDEADR LDMGF+ + I++ + RQTL++SAT + + LA
Sbjct: 252 E--IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
Query: 237 RLSLTD--YKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIV 294
L D QVG++E+ S+S + + + D+L+ + K ++
Sbjct: 310 ADYLNDPIQVQVGSLEL----SASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLI 365
Query: 295 FLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARG 354
F S+ + + + R + G + +HG + Q R L +F + + +TDV ARG
Sbjct: 366 FASTKRMCDDITKYLR--EDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARG 423
Query: 355 IDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF------LKRLK 408
ID +++VI D P +++ Y+HR+GR R G G ++ T E+ +G + R
Sbjct: 424 IDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFT-EQNKGLGAKLISIMREA 482
Query: 409 TKNIEPSRL 417
+NI P L
Sbjct: 483 NQNIPPELL 491
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 173 bits (438), Expect = 1e-42
Identities = 117/362 (32%), Positives = 190/362 (52%), Gaps = 16/362 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+ + + L+ L A F T IQ ++ P++L+ D++ AKTGSGKTL +LIP
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L + +G LI++PTRELA QI + + G+ + S + GG + + + R
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 556
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+I++ TPGR+ ++ + + + LLVLDEADR LDMGF+ + I+N +P RQT
Sbjct: 557 GADIVVATPGRLNDILEMKM-IDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615
Query: 222 LLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSSATPESLQQSYIE-VPLPDKLD 278
L+++AT + + +A L + QV G ++ L AN + Y+E VP +K
Sbjct: 616 LMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAIT-------QYVEVVPQMEKER 668
Query: 279 ILFSFIKSHLK-SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
L ++S + SK+I+F S+ + + R + + +HG + Q R L++F
Sbjct: 669 RLEQILRSQERGSKVIIFCSTKRLCDHL---ARSVGRHFGAVVIHGDKTQGERDWVLNQF 725
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
+ L +TDV ARG+D + VI D P V+ Y+HR+GR R G G + T
Sbjct: 726 RSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTE 785
Query: 398 EE 399
++
Sbjct: 786 QD 787
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 172 bits (437), Expect = 1e-42
Identities = 116/370 (31%), Positives = 193/370 (51%), Gaps = 15/370 (4%)
Query: 25 DLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGA 84
D+ T E + ++ F + + E L+G+ F K + IQ+ ++P LK DV+
Sbjct: 10 DMATVEFESSEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQ 69
Query: 85 AKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSA 144
A++G+GKT F I V++ L T + ALI+SPTRELA+QI +V+ +G +
Sbjct: 70 AQSGTGKTATFSISVLQSLD----TQVRETQALILSPTRELAVQIQKVVLALGDYMNVQC 125
Query: 145 GLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG 203
IGG ++ + ++ +++ GTPGR+ M + T ++LLVLDEAD L+ G
Sbjct: 126 HACIGGTNLGEDIRKLDYGQHVVSGTPGRVFD-MIRRRNLRTRAIKLLVLDEADEMLNKG 184
Query: 204 FKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES 263
FK L I LP Q +L SAT + ++ +TD + +L T E
Sbjct: 185 FKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTD-----PIRIL-VKRDELTLEG 238
Query: 264 LQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q ++ V + K D L + ++ ++F ++ ++V ++ + ++ +S MH
Sbjct: 239 IKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMH-- 296
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G +Q R E + +F L STDV ARG+D P V VI D P + + YIHR+GR+
Sbjct: 297 GDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRS 356
Query: 383 ARFGKEGKSL 392
RFG++G ++
Sbjct: 357 GRFGRKGVAI 366
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 172 bits (437), Expect = 1e-42
Identities = 125/415 (30%), Positives = 205/415 (49%), Gaps = 29/415 (6%)
Query: 5 QKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKL 64
+K +++QR LIR++ + ++ P I F+D+ L LKE ++
Sbjct: 118 RKMSSKQRDLIRKQ-----WHIIVNGDDIPPPIKN---FKDMKFPRPVLDTLKEKGIVQP 169
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG----ALIIS 120
T IQ + +P+ L G D++G A TGSGKTL F++P+I +E+ G LI+
Sbjct: 170 TPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVC 229
Query: 121 PTRELAMQIYEVLSKI------GKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRI 173
P+RELA Q YEV+ + + + L IGG D+ + E + R ++I++ TPGR
Sbjct: 230 PSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGR- 288
Query: 174 LQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLD 233
L+ M + + L LDEADR +D+GF+ + + ++ + RQTLLFSAT +
Sbjct: 289 LKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQ 348
Query: 234 DLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLI 293
AR +L K V +N + A + Q V K+ L ++ ++
Sbjct: 349 IFARSALV--KPV----TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK-TSPPVL 401
Query: 294 VFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVAR 353
+F + V ++E L G+ + +HG + Q R + F + L +TDV ++
Sbjct: 402 IFCENKADVDDIHEYL--LLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASK 459
Query: 354 GIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
G+DFP + VI D P +++ Y+HR+GR R GK G + + + E L LK
Sbjct: 460 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLK 514
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 172 bits (437), Expect = 1e-42
Identities = 123/393 (31%), Positives = 207/393 (52%), Gaps = 27/393 (6%)
Query: 31 EEYNPKIAKANL--FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTG 88
EE + +A + F++L + L GLK F+ T+IQ +IP++L D++ +K+G
Sbjct: 13 EERSSDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSG 72
Query: 89 SGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH-TTFSAGLV 147
+GKTL ++I V++ +++ A+I+ PTRELA+Q+ + + K F
Sbjct: 73 TGKTLIYVIAVVQSFN----PNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAF 128
Query: 148 IGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDM-GFKR 206
IGG DV +++R++ ++IGTPGR+L + V F+ S L+LLVLDEAD+ +
Sbjct: 129 IGGTDVAKDRKRMNESRVIIGTPGRLLHLYENRV-FDVSKLRLLVLDEADQLYQTKSLQH 187
Query: 207 TLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPE-SLQ 265
T+ +I +P +RQ + SAT Q+LD+ RL+ +V +L +NS AT ++
Sbjct: 188 TVSKLIEAMPKNRQIIACSATYDQNLDE--RLA-----KVMDKPMLISNSERATVLLGIR 240
Query: 266 QSYIEVPLPD--------KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGIS 317
Q E+P + KL IL + I+F SS + Y+ + GI
Sbjct: 241 QFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADS-YKNYLTAS-GID 298
Query: 318 LMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
+ G +Q+ R + + L +TD++ARG+D P + VI +D P+D TY+H
Sbjct: 299 CHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLH 358
Query: 378 RVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK 410
R+GRA RFG +G ++ + ++E + + K
Sbjct: 359 RIGRAGRFGSKGIAITFIASKKESQRFREMSKK 391
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 172 bits (436), Expect = 2e-42
Identities = 119/382 (31%), Positives = 194/382 (50%), Gaps = 27/382 (7%)
Query: 22 KIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDV 81
K+ +T+ + K N F+D + + L G+ E F + + IQ ESIP++L G D+
Sbjct: 112 KLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDI 171
Query: 82 LGAAKTGSGKTLAFLIPVIEKLYREKWTDMDG---LGALIISPTRELAMQIYEVLSKIGK 138
L AK G+GKT AF IPV+EK+ D D G ++ T +V ++GK
Sbjct: 172 LARAKNGTGKTAAFCIPVLEKI------DQDNNVIQGNCVLDHTS-------QVCKELGK 218
Query: 139 HTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEAD 197
H + GG + + R+ + +++L+GTPGRIL + V + +LV+DEAD
Sbjct: 219 HLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCV-LKDCSVLVMDEAD 277
Query: 198 RCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSS 257
+ L F+ +++ +I+ LP SRQ L+FSAT ++ D LT+ + M+ L
Sbjct: 278 KLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDEL----- 332
Query: 258 SATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGIS 317
T + + Q Y V K+ L + ++ I+F +S +V + + +L G S
Sbjct: 333 --TLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYS 388
Query: 318 LMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
++H + Q R F L TD+ RGID +V+ VI D P++ +TY+H
Sbjct: 389 CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 448
Query: 378 RVGRAARFGKEGKSLIMLTPEE 399
RVGR+ RFG G ++ ++T E+
Sbjct: 449 RVGRSGRFGHLGLAVNLITYED 470
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 172 bits (436), Expect = 2e-42
Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 26/360 (7%)
Query: 45 DLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY 104
DL IS + +K LK KL IQ+ + +++G D++G A+TG+GKTLAF IP+I+K+
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 105 REKWTDMDGLG----ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI 160
K+ G G L+++PTRELA Q+ + + + + GG + + +
Sbjct: 180 --KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMREL 235
Query: 161 SR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR 219
+ I++ +GTPGRI+ M + N S +Q +VLDEAD+ L +GF ++ I+ LPA R
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGA-LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKR 294
Query: 220 QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
Q+++FSAT + L + L + + L +S + + I + I
Sbjct: 295 QSMMFSATMPSWIRSLTKKYLNNPLTID----LVGDSDQKLADGITMYSIAADSYGRASI 350
Query: 280 LFSFIKSHLKS-KLIVFLSSSKQVHFVYETFRKLQPGISLMH----LHGRQKQTARTETL 334
+ +K H K K IVF + + +L G++ + LHG Q R TL
Sbjct: 351 IGPLVKEHGKGGKCIVFTQTKRDAD-------RLAFGLAKSYKCEALHGDISQAQRERTL 403
Query: 335 DKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM 394
F L +TDV ARG+D P+VD VI + P + +T++HR GR R GK+G ++++
Sbjct: 404 AGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI 463
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 172 bits (436), Expect = 2e-42
Identities = 118/364 (32%), Positives = 185/364 (50%), Gaps = 16/364 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+ + L+ + A F T IQ +S P++++G D++ AKTGSGKTL +LIP
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L R + G L++SPTRELA QI E K G+ + S + GG + + R
Sbjct: 220 LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLER 279
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+I++ TPGR+ ++ + + LVLDEADR LDMGF+ + I+ +P RQT
Sbjct: 280 GADIVVATPGRLNDILEMR-RISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 222 LLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSSATPESLQQSYIEVPLP-DKLD 278
L+++AT + + +A L + QV G ++ L AN S +IEV P +K
Sbjct: 339 LMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSIT-------QHIEVVAPMEKQR 391
Query: 279 ILFSFIKSHLK-SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
L ++S SK+I+F S+ + + R L +HG + Q R L++F
Sbjct: 392 RLEQILRSQEPGSKVIIFCSTKRMCD---QLTRNLTRQFGAAAIHGDKSQPERDNVLNQF 448
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
+ L +TDV ARG+D + V+ D P V+ Y+HR+GR R G G++
Sbjct: 449 RSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGD 508
Query: 398 EEEE 401
++ +
Sbjct: 509 QDSK 512
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 172 bits (436), Expect = 2e-42
Identities = 120/400 (30%), Positives = 201/400 (50%), Gaps = 32/400 (8%)
Query: 9 TQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQ 68
T+Q + D+ + +ET + P + N F ++ + E ++ ++K T +Q
Sbjct: 130 TEQDNTVINFDAYEDIPIETSGDNVPPPV---NTFAEIDLGEALNLNIRRCKYVKPTPVQ 186
Query: 69 RESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG------ALIISPT 122
R +IP+ L+G D++ A+TGSGKT AF P+I + +++ A+I+SPT
Sbjct: 187 RHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPT 246
Query: 123 RELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAV 181
RELA QI++ K T + GG + + + R ++IL+ TPGR+ +++A
Sbjct: 247 RELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERA- 305
Query: 182 GFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS----RQTLLFSATQSQSLDDLAR 237
+ ++ L LDEADR LDMGF+ + I+ + RQTLLFSAT + + LA
Sbjct: 306 RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAA 365
Query: 238 LSLTDY-----KQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK- 291
L +Y +VG+ L +S ++S++ +D+L + ++ ++ K
Sbjct: 366 DFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHL-------MDLLHAQRENGIQGKQ 418
Query: 292 --LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTD 349
+VF+ + + + E + + G +HG + Q R L F + L +TD
Sbjct: 419 ALTLVFVETKRGADSL-ENWLCIN-GFPATSIHGDRTQQEREVALKAFKSGRTPILVATD 476
Query: 350 VVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
V ARG+D P V V+ D P D+D Y+HR+GR R GK G
Sbjct: 477 VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 172 bits (435), Expect = 2e-42
Identities = 121/397 (30%), Positives = 206/397 (51%), Gaps = 24/397 (6%)
Query: 13 KLIRERDSQKIKDLETKVEEYN-PKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRES 71
++ +E + K+LE KV + P+ K + ++ + L +K+ + K IQ ++
Sbjct: 502 RMTQEEVNTYRKELELKVHGKDVPRPIK--FWHQTGLTSKILDTMKKLNYEKPMPIQTQA 559
Query: 72 IPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDM-DGLGALIISPTRELAMQIY 130
+P+ + G D +G AKTGSGKTL F++P++ + + + DG L+++PTREL QI+
Sbjct: 560 LPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIH 619
Query: 131 EVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVG--FNTSN 187
+ K K V GG V + + R I++ TPGR++ + + G N
Sbjct: 620 SDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRR 679
Query: 188 LQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYK--Q 245
+ LV+DEADR DMGF+ + II N+ RQT+LFSAT + ++ LAR L Q
Sbjct: 680 VTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQ 739
Query: 246 VGTMEVLNANSSSAT---PESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQV 302
VG V+N + + PES ++ + L++L + + K K++VF+ S ++
Sbjct: 740 VGGRSVVNKDITQLVEVRPES--DRFLRL-----LELLGEWSE---KGKILVFVQSQEKC 789
Query: 303 HFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDW 362
+Y ++ + LHG + QT R T+ F L +T V ARG+D ++
Sbjct: 790 DALYRDM--IKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELEL 847
Query: 363 VIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
V+ D P + Y+HRVGR R G++G ++ ++ ++
Sbjct: 848 VVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 884
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 171 bits (434), Expect = 3e-42
Identities = 116/369 (31%), Positives = 193/369 (51%), Gaps = 20/369 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F++ + + + +A + KLT +Q+ SIP+ L G D++ A+TGSGKT AFL+P++
Sbjct: 290 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 349
Query: 103 LYRE-----KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE- 156
+ + ++ ++ +I++PTREL QIY K T A ++ GG +
Sbjct: 350 MMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSI 409
Query: 157 KERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIIN--N 214
++ + NIL TPGR++ + + ++ LVLDEADR LDMGF + +I+
Sbjct: 410 RQIVQGCNILCATPGRLMDIIGKEK-IGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 468
Query: 215 LPAS--RQTLLFSATQSQSLDDLARLSL-TDYKQVGTMEVLNANSSSATPESLQQSYIEV 271
+P+ RQTL+FSAT + + LA L ++Y V +V A +QQ+ ++V
Sbjct: 469 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC------RDVQQTVLQV 522
Query: 272 PLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
K + L +++ + +VF+ + K+ F+ TF Q IS +HG ++Q R
Sbjct: 523 GQFSKREKLVEILRNIGDERTMVFVETKKKADFI-ATFL-CQEKISTTSIHGDREQRERE 580
Query: 332 ETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKS 391
+ L F + L +T V ARG+D +V VI D P +D Y+HR+GR R G G++
Sbjct: 581 QALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRA 640
Query: 392 LIMLTPEEE 400
+ E +
Sbjct: 641 ISFFDLESD 649
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 171 bits (434), Expect = 3e-42
Identities = 135/415 (32%), Positives = 211/415 (50%), Gaps = 28/415 (6%)
Query: 10 QQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQR 69
++ K + D+ K + K+EE + K F + PISE+T+K LK L IQ
Sbjct: 106 KKSKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQV 165
Query: 70 ESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG--ALIISPTRELAM 127
++ +G D++ A+TG+GKT +F IP+IE+L R + T L+++PTRELA
Sbjct: 166 KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELAN 225
Query: 128 QIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTS 186
Q+ + I + S GG + I I+IL+GTPGRI H+ Q+ + S
Sbjct: 226 QVAKDFKDITRK--LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHL-QSGRLDLS 282
Query: 187 NLQLLVLDEADRCLDMGFKRTLDAIIN-----NLPASRQTLLFSATQSQSLDDLARLSLT 241
L+ +VLDE D+ LD+GF ++ II+ + + QTLLFSAT Q + +A+ +
Sbjct: 283 KLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMK 342
Query: 242 D-YKQVGTMEVLNANSSSATPE-SLQQSYIEVP--LPDKLDILFSFIKSHLKSKLIVFLS 297
Y+QV + + +++ ++Q + + P + D L + S + + I+F
Sbjct: 343 SRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVY-----SGSEGRAIIFCE 397
Query: 298 SSKQVHFVYETFRKLQPGI--SLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGI 355
+ K V T + P I + LHG Q+ R TL F L +T+V ARG+
Sbjct: 398 TKKNV-----TEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 452
Query: 356 DFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK 410
D P VD VIQ P+DV++YIHR GR R G+ G + P E G L+ ++ K
Sbjct: 453 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP-RERGQLRYVEQK 506
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 171 bits (434), Expect = 3e-42
Identities = 111/369 (30%), Positives = 197/369 (53%), Gaps = 16/369 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + E+ L+G+ F K + IQ+ +I G DV+ A++G+GKT F + ++++
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
+ E + AL+++PTRELA QI +V+S +G++ + IGG V ++ ++
Sbjct: 91 IDHED----PHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA 146
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
I++++GTPGR+ +++ +TS +++ VLDEAD L GFK + + ++P Q
Sbjct: 147 GIHVVVGTPGRVGDMINRNA-LDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQV 205
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDIL 280
+L SAT + L +T+ + +L T E ++Q YI V + K D L
Sbjct: 206 VLLSATMPSEV-----LDVTNRFMRNPIRIL-VKKDELTLEGIRQFYINVQKDEWKFDCL 259
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRA 340
++ ++F ++ ++V + E + Q +S LHG Q R + +F
Sbjct: 260 CDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSC--LHGDMDQAERDTIMREFRSG 317
Query: 341 QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
L +TD++ARGID V VI D P + + YIHR+GR+ RFG++G ++ +T E +
Sbjct: 318 SSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVT-END 376
Query: 401 EGFLKRLKT 409
LK +++
Sbjct: 377 ARQLKEIES 385
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 171 bits (433), Expect = 4e-42
Identities = 114/350 (32%), Positives = 179/350 (50%), Gaps = 10/350 (2%)
Query: 56 LKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE-KWTDMDGL 114
LK+ + K T IQ ++IP + G DV+G AKTGSGKTLAFL+P+ + + + + DG
Sbjct: 319 LKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGP 378
Query: 115 GALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRI 173
A+I++PTRELAMQ Y+ +K K GG ++ + + R I++ TPGR+
Sbjct: 379 IAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRM 438
Query: 174 LQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQS 231
+ + G N + LVLDEADR D GF+ + ++NN+ +QT+LFSAT +
Sbjct: 439 IDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRH 498
Query: 232 LDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK 291
++ LAR L +E+L S + Q + I L +L + +
Sbjct: 499 MEALARKVLDK-----PVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGS 553
Query: 292 LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVV 351
IVF+ ++ + + + S+ LHG Q R ++ F L +T V
Sbjct: 554 SIVFVDKQEKADDIVDQLMRTGYN-SVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVA 612
Query: 352 ARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
ARG+D ++ V+ DCP + Y+HRVGR R G++G + + PE +E
Sbjct: 613 ARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQE 662
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 171 bits (433), Expect = 4e-42
Identities = 114/350 (32%), Positives = 179/350 (50%), Gaps = 10/350 (2%)
Query: 56 LKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE-KWTDMDGL 114
LK+ + K T IQ ++IP + G DV+G AKTGSGKTLAFL+P+ + + + + DG
Sbjct: 319 LKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGP 378
Query: 115 GALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRI 173
A+I++PTRELAMQ Y+ +K K GG ++ + + R I++ TPGR+
Sbjct: 379 IAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRM 438
Query: 174 LQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQS 231
+ + G N + LVLDEADR D GF+ + ++NN+ +QT+LFSAT +
Sbjct: 439 IDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRH 498
Query: 232 LDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK 291
++ LAR L +E+L S + Q + I L +L + +
Sbjct: 499 MEALARKVLDK-----PVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGS 553
Query: 292 LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVV 351
IVF+ ++ + + + S+ LHG Q R ++ F L +T V
Sbjct: 554 SIVFVDKQEKADDIVDQLMRTGYN-SVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVA 612
Query: 352 ARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
ARG+D ++ V+ DCP + Y+HRVGR R G++G + + PE +E
Sbjct: 613 ARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQE 662
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 171 bits (433), Expect = 4e-42
Identities = 125/403 (31%), Positives = 197/403 (48%), Gaps = 35/403 (8%)
Query: 22 KIKDLETKV--EEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGH 79
K D E K+ E I F + ++E K + A + K T IQ+ ++PL +G+
Sbjct: 320 KFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGY 379
Query: 80 DVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGA-----LIISPTRELAMQIYEVLS 134
D++ A+TGSGKT AFL+P++ +L + + G G +I++PTRELA QIY
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGR 439
Query: 135 KIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVL 193
K T V GG V + K +I + I++GT GRI +H + + VL
Sbjct: 440 KFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRI-KHFCEEGTIKLDKCRFFVL 498
Query: 194 DEADRCLD-MGFKRTLDAIIN--NLPA--SRQTLLFSATQSQSLDDLARLSLTD-YKQVG 247
DEADR +D MGF ++ I+N ++P +RQTL+FSAT S+ + AR L + Y +
Sbjct: 499 DEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIA 558
Query: 248 TMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKS------------KLIVF 295
++ AN + + Q + +K D L + + S K +VF
Sbjct: 559 IDKIGAAN------KCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVF 612
Query: 296 LSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGI 355
+S + Q + + +HG ++Q R+E L +F L +T V RG+
Sbjct: 613 VSQRAMADTLASILSSAQ--VPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGL 670
Query: 356 DFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398
D VD VI D P+++D YIHR+GR R G G++ ++ +
Sbjct: 671 DIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISED 713
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 171 bits (432), Expect = 5e-42
Identities = 120/397 (30%), Positives = 192/397 (48%), Gaps = 28/397 (7%)
Query: 30 VEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGS 89
VE I N F P++ L+ +K + + + T +Q+ SIP+ G D++ A+TGS
Sbjct: 158 VEVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGS 217
Query: 90 GKTLAFLIPVIEKLYREKWT----DMD-GLG---------ALIISPTRELAMQIYEVLSK 135
GKT FL P++ + + D D G+G LI++PTREL QI+E K
Sbjct: 218 GKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRK 277
Query: 136 IGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLD 194
+ V GG D+ + +I + ++L TPGR++ +D+ + +N++ LVLD
Sbjct: 278 FCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRG-RISLANIKFLVLD 336
Query: 195 EADRCLDMGFKRTLDAIINNLPAS----RQTLLFSATQSQSLDDLARLSLTDYKQVGTME 250
EADR LDMGF+ + I+ + RQTL+FSAT + + LAR L DY
Sbjct: 337 EADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYV------ 390
Query: 251 VLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFR 310
L+ +T E++ Q + V +K L + + L + +K++ +
Sbjct: 391 FLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYL 450
Query: 311 KLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPE 370
L +HG + Q R L+ F + + +T V +RG+D P+V VI D P
Sbjct: 451 -LNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPT 509
Query: 371 DVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRL 407
D+D Y+HR+GR R G G+++ +G K L
Sbjct: 510 DIDDYVHRIGRTGRAGNTGQAVAFFN-RNNKGIAKEL 545
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 171 bits (432), Expect = 5e-42
Identities = 114/370 (30%), Positives = 197/370 (52%), Gaps = 17/370 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + E L+G+ F K + IQ+ +I +KG+DV+ A++G+GKT F I ++++
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L E AL+++PTRELA QI +V+ +G + + IGG +V E +++
Sbjct: 95 LEIE----FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 150
Query: 163 I--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
+I++GTPGR+ +++ + +++ VLDEAD L GFK + I L S Q
Sbjct: 151 EAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 209
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+ SAT + ++ + + D + +L T E ++Q YI V + KLD
Sbjct: 210 VVFASATMPTDVLEVTKKFMRD-----PIRIL-VKKEELTLEGIKQFYINVEREEWKLDT 263
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L ++ ++ ++FL++ ++V ++ E +S LHG Q R + +F
Sbjct: 264 LCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSA--LHGDMDQKERDVIMREFRS 321
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + + YIHR+GR RFG++G ++ +T EE
Sbjct: 322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVT-EE 380
Query: 400 EEGFLKRLKT 409
++ L+ ++T
Sbjct: 381 DKRILRDIET 390
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 171 bits (432), Expect = 5e-42
Identities = 121/388 (31%), Positives = 192/388 (49%), Gaps = 31/388 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D I + + ++ A + + T IQ+ ++PL G D+L A+TGSGKT AFL+P++ +
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSR 359
Query: 103 LYREKWTDMDGLGA-----LIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEK 157
L EK + G +I++PTRELA QIY K + V GG +V + K
Sbjct: 360 LILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNK 419
Query: 158 ERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIIN-- 213
+I + I++GT GR+ +H + + LVLDEADR +D MGF ++ IIN
Sbjct: 420 SQIMKGCTIIVGTIGRV-KHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYK 478
Query: 214 NLPAS--RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV 271
N+P + RQT++FSAT S+ + AR L + + T++ + A + Q +
Sbjct: 479 NMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVI-----QEFELC 533
Query: 272 PLPDKLDILFSFIKSHLKS------------KLIVFLSSSKQVHFVYETFRKLQPGISLM 319
K+D L + + + K IVF++ K + Q + +
Sbjct: 534 DRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQ--VPAI 591
Query: 320 HLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRV 379
+HG ++Q R+ L F L +T VV RG+D VD VI D P ++D YIHR+
Sbjct: 592 TIHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRI 651
Query: 380 GRAARFGKEGKSLIMLTPEEEEGFLKRL 407
GR R G G++ ++ ++ L +L
Sbjct: 652 GRTGRVGNSGRATSFISLADDVQILPQL 679
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 170 bits (431), Expect = 7e-42
Identities = 115/370 (31%), Positives = 192/370 (51%), Gaps = 15/370 (4%)
Query: 25 DLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGA 84
D E V E I F D+ ++++ L+G+ + + K +EIQ+ ++ LKG DV+
Sbjct: 6 DEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQ 65
Query: 85 AKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSA 144
A++G+GKT I V + + + L++SP+RELA Q + + IG HT A
Sbjct: 66 AQSGTGKTSMIAISVCQIVN----ISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQA 121
Query: 145 GLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG 203
IGGK + + +++ R ++ + GTPGR+ + + T ++LLVLDE+D L G
Sbjct: 122 HACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRG-SLQTKAVKLLVLDESDEMLSKG 180
Query: 204 FKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES 263
K + + LP Q L SAT Q + ++ +TD ++ T E
Sbjct: 181 LKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRI------LVKPDELTLEG 234
Query: 264 LQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q Y++V + K D L ++ I+F ++ ++V ++ E R +S MH
Sbjct: 235 IKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGD 294
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
RQK+ R + +++F + L ++DV ARGID +V VI D P + + YIHR+GRA
Sbjct: 295 KRQKE--RDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRA 352
Query: 383 ARFGKEGKSL 392
RFG+EG ++
Sbjct: 353 GRFGREGVAI 362
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 170 bits (431), Expect = 7e-42
Identities = 115/372 (30%), Positives = 187/372 (49%), Gaps = 28/372 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F++ + ++ +K F K T IQ + P++L G D++G A+TGSGKTLA+++P I
Sbjct: 239 FEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 298
Query: 103 LYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIG-------KHTTFSAGLVIGGKDVT 154
+ + +G AL+++PTRELA QI V+ G +HT + GG
Sbjct: 299 IGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTC-----IFGGSSKV 353
Query: 155 FEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIIN 213
+ + R + ++I TPGR++ ++ N LVLDEADR LDMGF+ + II
Sbjct: 354 PQARDLDRGVEVIIATPGRLIDFLENR-NTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 412
Query: 214 NLPASRQTLLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSSATPESLQQSYIEV 271
+ RQ +++SAT + + LA L DY Q+ G+M + S++ + + E+
Sbjct: 413 QIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNL----SANHNIRQIVEICTEI 468
Query: 272 PLPDKLDILFSFIKSHLKS-----KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQK 326
P +L L + I S K+IVF+ + +V + + R G + +HG +
Sbjct: 469 EKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRA--EGYNATSIHGDKT 526
Query: 327 QTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFG 386
Q R L F + L +TDV +RG+D + +VI D P + Y+HR+GR R
Sbjct: 527 QNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQ 586
Query: 387 KEGKSLIMLTPE 398
+ G + TP+
Sbjct: 587 QLGTAYTFFTPD 598
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 170 bits (430), Expect = 9e-42
Identities = 115/377 (30%), Positives = 195/377 (51%), Gaps = 15/377 (3%)
Query: 18 RDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLK 77
R + + +DL E + + F + + E+ L+G+ F K + IQ+ SI +K
Sbjct: 3 RKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVK 62
Query: 78 GHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIG 137
G DV+ A++G+GKT F I +++ L T + L +SPTRELA+QI +V+ +G
Sbjct: 63 GRDVIAQAQSGTGKTATFSISILQSLD----TTLRETQVLCLSPTRELAVQIQKVILALG 118
Query: 138 KHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEA 196
+ IGG ++ + ++ +I+ GTPGR+ + + V T +++LVLDEA
Sbjct: 119 DMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRV-LRTRAIKMLVLDEA 177
Query: 197 DRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANS 256
D L+ GFK + + LP + Q +L SAT + ++ +TD + +L
Sbjct: 178 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTD-----PIRIL-VKR 231
Query: 257 SSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPG 315
T E ++Q ++ V + K D L + ++ ++F ++ ++V ++ E R+
Sbjct: 232 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 291
Query: 316 ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTY 375
+S MH G Q R E + +F Q L +TDV ARGID V VI D P + + Y
Sbjct: 292 VSSMH--GDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELY 349
Query: 376 IHRVGRAARFGKEGKSL 392
IHR+GR+ RFG++G ++
Sbjct: 350 IHRIGRSGRFGRKGVAI 366
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 169 bits (429), Expect = 1e-41
Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 19/360 (5%)
Query: 35 PKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLA 94
P A N + LP + + + A F + IQ +S P++++ D++ AKTGSGKTL
Sbjct: 226 PPAAGFNSYLVLPANGRMVYS---AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Query: 95 FLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVT 154
+LIP L R G L++SPTRELA QI K GK + S + GG
Sbjct: 283 YLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKG 342
Query: 155 FEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIIN 213
+ + I R ++I++ TPGR L + + + + LVLDEADR LDMGF+ + I+N
Sbjct: 343 PQLKEIERGVDIVVATPGR-LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVN 401
Query: 214 NLPASRQTLLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSSATPESLQQSYIEV 271
+P RQTL+++AT + + +A L + QV G ++ L AN +S+ Q+ IEV
Sbjct: 402 EVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVAN------KSITQT-IEV 454
Query: 272 PLP-DKLDILFSFIKSHLK-SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTA 329
P +K L ++S SK+I+F S+ + + R L +HG + Q
Sbjct: 455 LAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCD---QLARNLTRTFGAAAIHGDKSQAE 511
Query: 330 RTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
R + L++F + L +TDV ARG+D + V+ D P V+ Y+HR+GR R G G
Sbjct: 512 RDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATG 571
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 169 bits (429), Expect = 1e-41
Identities = 116/357 (32%), Positives = 183/357 (50%), Gaps = 13/357 (3%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE- 106
+S++ ++ L+ F K T IQ ++IP + G D++G AKTGSGKTLAF++P+ + +
Sbjct: 517 VSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP 576
Query: 107 KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INI 165
D DG A+I++PTREL MQI + + K K V GG ++ + + R I
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEI 636
Query: 166 LIGTPGRILQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLL 223
++ TPGR++ + G N + +VLDEADR DMGF+ + II+N+ RQT++
Sbjct: 637 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 696
Query: 224 FSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSF 283
FSAT + ++ LAR L +EV+ S E ++Q + + K L
Sbjct: 697 FSATFPRQMEALARRILKK-----PIEVIVGGRSVVCKE-VEQHVVILNDDAKFFKLLEL 750
Query: 284 IKSHLKS-KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQH 342
+ + ++ +IVF+ + + K M LHG Q R T+ F +
Sbjct: 751 LGIYQEAGSIIVFVDKQENADILLRDLMKAS--YPCMSLHGGIDQFDRDSTIIDFKSGKV 808
Query: 343 VCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +T V ARG+D + V+ D P + Y+HR GR R GK+G + +TPE+
Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQ 865
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 169 bits (428), Expect = 1e-41
Identities = 115/347 (33%), Positives = 180/347 (51%), Gaps = 17/347 (4%)
Query: 61 FIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIIS 120
F K T IQ + P L G DV+G A+TGSGKT AF +P I L ++ G+ L+IS
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQ--KKRGIQVLVIS 189
Query: 121 PTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQA 180
PTRELA QIY+ L + V GG ++ ++ + +++ TPGR+L + +
Sbjct: 190 PTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEG 249
Query: 181 VGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS-RQTLLFSATQSQSLDDLARLS 239
+ S + LVLDEADR L+ GF+ + II AS RQTL+F+AT + + +LA
Sbjct: 250 -SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTF 308
Query: 240 LTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP-----DKLDILFSFIKSHLKS-KLI 293
+ + ++V N+ T +EV P L++L + K+ K++
Sbjct: 309 MNN-----PIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVL 363
Query: 294 VFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVAR 353
+F K+ V + G ++ +HG Q RT+ L++F + L +TDV AR
Sbjct: 364 IFALYKKEAARVERNLK--YNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAAR 421
Query: 354 GIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
G+D P+V VI + P V+ Y+HR+GR R G+ G + + T +E+
Sbjct: 422 GLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 169 bits (427), Expect = 2e-41
Identities = 111/358 (31%), Positives = 182/358 (50%), Gaps = 12/358 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + P+ Q + L F K T IQ S P+++ G D++ AKTGSGKTLAF++P +
Sbjct: 132 FNEAPLPGQ-IHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVH 190
Query: 103 LYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
+ ++ +G L++ PTRELA Q+ EV + GG + +
Sbjct: 191 ITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLE 250
Query: 162 R-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
R ++I++ TPGR+L +D N LVLDEADR LDMGF+ + II + RQ
Sbjct: 251 RGVDIVVATPGRLLDFLDNGTT-NMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQ 309
Query: 221 TLLFSATQSQSLDDLARLSLTD--YKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278
TL+FSAT + + LA D + VG++E+ ++ + + L++ + L +
Sbjct: 310 TLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLME--- 366
Query: 279 ILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338
L + I + + K I+F+ + ++ + R+ G + +HG + Q R L +F
Sbjct: 367 -LLNHIMNQKECKTIIFVETKRKADELTRAMRR--DGWPTLCIHGDKNQGERDWVLQEFK 423
Query: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
+ + +TDV ARG+D + +VI D P + + Y+HR+GR R K+G + T
Sbjct: 424 AGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT 481
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 169 bits (427), Expect = 2e-41
Identities = 133/409 (32%), Positives = 204/409 (49%), Gaps = 24/409 (5%)
Query: 3 KKQKHNTQQRKL----IRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKE 58
K +K + ++KL + E +S++ K + T K A F + + E L K
Sbjct: 74 KNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCK- 132
Query: 59 AAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG--- 115
F K + IQ + P L G D++G AKTGSGKTLAF IP I + ++ G
Sbjct: 133 -TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 116 --ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-SRINILIGTPGR 172
L++SPTRELA+QI +VL + G+ + V GG + I S ++I+IGTPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 173 ILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSL 232
+ ++ V S++ +VLDEADR LDMGF+ + I++N RQ ++FSAT +
Sbjct: 252 LRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDV 310
Query: 233 DDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV----PLPDKLDILFSFIKSHL 288
LA+ ++ ++V+ + A + Q IEV +L L
Sbjct: 311 HKLAQ----EFMDPNPIKVIIGSVDLAANHDVMQ-IIEVLDERARDQRLIALLEKYHKSQ 365
Query: 289 KSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFST 348
K++++VF + + E F + Q G + +HG + Q+ RT +L F L +T
Sbjct: 366 KNRVLVFALYKVEAERL-ERFLQ-QRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVAT 423
Query: 349 DVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
DV ARG+D P V+ VI P + Y+HR+GR R GK+G + TP
Sbjct: 424 DVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTP 472
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 168 bits (425), Expect = 3e-41
Identities = 129/390 (33%), Positives = 202/390 (51%), Gaps = 25/390 (6%)
Query: 24 KDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLG 83
++ +++E+ P K F + PISE+T+K LK L IQ ++ G D++
Sbjct: 101 EESNSEIEQEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIA 160
Query: 84 AAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG--ALIISPTRELAMQIYEVLSKIGKHTT 141
A+TG+GKT +F IP+IEKL+ E G L+++PTRELA Q+ + S I K +
Sbjct: 161 QARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS 220
Query: 142 ---FSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADR 198
F G GG+ FE+ R + I+IL+GTPGRI H+ + + L+ +VLDE D+
Sbjct: 221 VACFYGGTPYGGQ---FERMR-NGIDILVGTPGRIKDHIQNGK-LDLTKLKHVVLDEVDQ 275
Query: 199 CLDMGFKRTLDAIIN-----NLPASRQTLLFSATQSQSLDDLARLSL-TDYKQVGTMEVL 252
LDMGF ++ I++ + + QTLLFSAT + ++A+ + + Y+QV L
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVD----L 331
Query: 253 NANSSSATPESLQQSYIEVPLPDKLDILFSFIK--SHLKSKLIVFLSSSKQVHFVYETFR 310
+ T +++ I+ + ++ I+ S + + I+F + K+ + +
Sbjct: 332 IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSA 391
Query: 311 KLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPE 370
Q SL HG Q R TL F L +T+V ARG+D P VD VIQ P+
Sbjct: 392 IKQDAQSL---HGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPK 448
Query: 371 DVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
DV++YIHR GR R G+ G + +EE
Sbjct: 449 DVESYIHRSGRTGRAGRTGVCICFYQHKEE 478
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 167 bits (423), Expect = 6e-41
Identities = 115/367 (31%), Positives = 187/367 (50%), Gaps = 29/367 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + E + ++ + + T +Q+ +IP+ + D++ A+TGSGKT AFL+P++ +
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241
Query: 103 LYR----EKWTDMDGLG----------ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVI 148
+Y E M G +L+++PTRELA+QIYE K + +V
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 301
Query: 149 GGKDVTFEKERISR-INILIGTPGRILQHMDQA-VGFNTSNLQLLVLDEADRCLDMGFKR 206
GG D+ + + R ++L+ TPGR++ M++ +G + + LVLDEADR LDMGF+
Sbjct: 302 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFC--KYLVLDEADRMLDMGFEP 359
Query: 207 TLDAII--NNLPAS--RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPE 262
+ I+ + +P R T++FSAT + + LAR L +Y + V +T E
Sbjct: 360 QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV------GSTSE 413
Query: 263 SLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++ Q + V DK L + + K L + +K+ E F G + +H
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFL-YHEGYACTSIH 472
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G + Q R E L +F + L +T V ARG+D +V VI D P D++ Y+HR+GR
Sbjct: 473 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 532
Query: 383 ARFGKEG 389
R G G
Sbjct: 533 GRVGNLG 539
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 166 bits (421), Expect = 1e-40
Identities = 109/359 (30%), Positives = 184/359 (50%), Gaps = 15/359 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+++ + E L+G+ + + +Q +I KG DV+ A++G+GKT F I +++
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
+ + ALI+SPTRELA+QI V+ +G H IGG V + +++
Sbjct: 83 ID----LSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDY 138
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+++ GTPGR+ M + T N+++L+LDEAD L+ GFK + I LP Q
Sbjct: 139 GQHVVSGTPGRVTD-MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQV 197
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDIL 280
++ SAT Q + L +T+ + +L T E L+Q +I V + K D L
Sbjct: 198 VVVSATLPQDV-----LEMTNKFTTNPVRIL-VKRDELTLEGLKQYFIAVEKEEWKFDTL 251
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRA 340
+ ++ ++F +S ++V ++ E R + ++ +HG Q R + F +
Sbjct: 252 CDLYDTLTITQAVIFCNSRRKVDWLTEKMR--EANFTVTSMHGEMPQKERDAIMQDFRQG 309
Query: 341 QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L TD+ ARGID V VI D P + + YIHR+GR+ RFG++G ++ +T E+
Sbjct: 310 NSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNED 368
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 166 bits (421), Expect = 1e-40
Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 15/359 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + + L+G+ F + + IQ+ +I L DVL A++G+GKT F I V++K
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
+ T + ALI++PTRELA QI +V+ +G IGG V + +
Sbjct: 81 ID----TSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQA 136
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+++++GTPGR+ M Q T +Q+ VLDEAD L GFK + I LP + Q
Sbjct: 137 GVHVVVGTPGRV-HDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQV 195
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDIL 280
+L SAT Q + ++ + D + +L T E ++Q Y+ V + KLD L
Sbjct: 196 VLLSATMPQDVLEVTTKFMRD-----PIRIL-VKKDELTLEGIKQFYVAVEKEEWKLDTL 249
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRA 340
++ ++ ++F ++ ++V ++ E + +S MH G Q R + +F
Sbjct: 250 CDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMH--GDMDQAQRDTLMHEFRTG 307
Query: 341 QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + + YIHR+GR RFG++G S+ +T ++
Sbjct: 308 SSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDD 366
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 166 bits (421), Expect = 1e-40
Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 11 QRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRE 70
+++L++E D K+ + ET E + F + + E L+G+ F K + IQ+
Sbjct: 14 RKRLLKEEDMTKV-EFETSEE-----VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQR 67
Query: 71 SIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIY 130
+I +KG DV+ +++G+GKT F I V++ L + + ALI++PTRELA+QI
Sbjct: 68 AIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----VRETQALILAPTRELAVQIQ 123
Query: 131 EVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQ 189
+ L +G + IGG +V + ++ +++ GTPGR+ M + T ++
Sbjct: 124 KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD-MIRRRSLRTRAIK 182
Query: 190 LLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTM 249
+LVLDEAD L+ GFK + + LP + Q +L SAT + ++ +TD +
Sbjct: 183 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD-----PI 237
Query: 250 EVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYET 308
+L T E ++Q ++ V + K D L + ++ ++F ++ ++V ++ E
Sbjct: 238 RIL-VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 296
Query: 309 FRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDC 368
R+ +S MH G Q R + +F L STDV ARG+D P V +I D
Sbjct: 297 MREANFTVSSMH--GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 354
Query: 369 PEDVDTYIHRVGRAARFGKEGKSL 392
P + + YIHR+GR+ R+G++G ++
Sbjct: 355 PNNRELYIHRIGRSGRYGRKGVAI 378
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 166 bits (421), Expect = 1e-40
Identities = 122/381 (32%), Positives = 199/381 (52%), Gaps = 29/381 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+ L +S L+GL+ A F + + +Q ++IPL G D++ AK+G+GKT F ++
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIG-KHTTFSAGLVIGGKDVTFEKERIS 161
L E + LI++PTRE+A+QI+ V++ IG K + IGG ++ +K R+
Sbjct: 124 LVLENLSTQ----ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 179
Query: 162 RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG-FKRTLDAIINNLPASRQ 220
+ +I +G+PGRI Q ++ N +++L +LDEAD+ L+ G F+ ++ I ++LPAS+Q
Sbjct: 180 KCHIAVGSPGRIKQLIELDY-LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ 238
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV---PLPDKL 277
L SAT + L + +LT Y + T LN++ S L+Q Y V PL K+
Sbjct: 239 MLAVSATYPEFLAN----ALTKYMRDPTFVRLNSSDPSLI--GLKQYYKVVNSYPLAHKV 292
Query: 278 DILFSFIKSHLK--------SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTA 329
F HL+ ++ +VF + + + + G + G Q
Sbjct: 293 ---FEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSS--KGFPAECISGNMNQNQ 347
Query: 330 RTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
R + + K L STD+ +RGID V+ V+ +D P D +TY+HR+GRA RFG G
Sbjct: 348 RLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLG 407
Query: 390 KSLIMLTPEEEEGFLKRLKTK 410
++ EEE + R+ K
Sbjct: 408 LTVTYCCRGEEENMMMRIAQK 428
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 166 bits (421), Expect = 1e-40
Identities = 121/393 (30%), Positives = 195/393 (48%), Gaps = 63/393 (16%)
Query: 40 ANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGK-------- 91
A+ F +L +S L+ + + K T IQ + IP + D+ +A TGSGK
Sbjct: 166 ADTFMELNLSRPLLRACETLGYKKPTPIQVQFIPQEWR--DLCASAITGSGKVSTRLMVL 223
Query: 92 ------------TLAFLIPVIEKL-YREKWTDMDGLGALIISPTRELAMQIYEVLSKIGK 138
T AF +P +E+L +R K + LI++PTRELA+QI+ ++ + +
Sbjct: 224 CNTEILFRYLTNTAAFALPTLERLLFRPK--RVFATRVLILTPTRELAVQIHSMIQNLAQ 281
Query: 139 HTTFSAGLVIGGKDVTFEKERISRI--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEA 196
T GL++GG V E+E + R +I++ TPGR++ H+ ++ + +L +L+LDEA
Sbjct: 282 FTDIKCGLIVGGLSVR-EQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 340
Query: 197 DRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANS 256
DR L GF + ++ P RQT+LFSAT ++ + +L +LSL + L+A+
Sbjct: 341 DRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLR------LSADP 394
Query: 257 SSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGI 316
S+ P L + Y+ F+ S S +KQ + L G+
Sbjct: 395 SARRPPGLTEEYLRE----------FFVPS--------CASGTKQAAHRLKILFGL-AGL 435
Query: 317 SLMHLHGRQKQTARTE----------TLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQV 366
LHG Q R + +L+ F + + L +TDV ARG+D V VI
Sbjct: 436 KAAELHGNLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINY 495
Query: 367 DCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
CP ++D+Y+HRVGR AR G+EG ++ +T +
Sbjct: 496 ACPREIDSYVHRVGRTARAGREGYAVTFVTDSD 528
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 166 bits (420), Expect = 1e-40
Identities = 115/391 (29%), Positives = 201/391 (50%), Gaps = 18/391 (4%)
Query: 20 SQKIKDLE-TKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKG 78
S+ I D+E ++++ K+ F D+ + E L+G+ F + + IQ+ +I ++G
Sbjct: 2 SEGITDIEESQIQTNYDKVVYK--FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG 59
Query: 79 HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGK 138
HDVL A++G+GKT F I ++++ T + AL+++PTRELA+QI +V+ +
Sbjct: 60 HDVLAQAQSGTGKTGTFSIAALQRID----TSVKAPQALMLAPTRELALQIQKVVMALAF 115
Query: 139 HTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADR 198
H IGG + E + I++GTPGR+ ++ Q F T +++ +LDEAD
Sbjct: 116 HMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADE 174
Query: 199 CLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSS 258
L GFK + I LP + Q +L SAT + L +T + +L
Sbjct: 175 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV-----LEVTTKFMRNPVRIL-VKKDE 228
Query: 259 ATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGIS 317
T E ++Q Y+ V + K + L S ++ ++F ++ ++V + R + +S
Sbjct: 229 LTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVS 288
Query: 318 LMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
++ Q++ R + +F L STD++ARGID V VI D P + + YIH
Sbjct: 289 AIYSDLPQQE--RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
Query: 378 RVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
R+GR RFG++G ++ +T E+ G ++ L+
Sbjct: 347 RIGRGGRFGRKGVAINFVT-NEDVGAMRELE 376
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 166 bits (420), Expect = 1e-40
Identities = 115/391 (29%), Positives = 201/391 (50%), Gaps = 18/391 (4%)
Query: 20 SQKIKDLE-TKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKG 78
S+ I D+E ++++ K+ F D+ + E L+G+ F + + IQ+ +I ++G
Sbjct: 2 SEGITDIEESQIQTNYDKVVYK--FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG 59
Query: 79 HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGK 138
HDVL A++G+GKT F I ++++ T + AL+++PTRELA+QI +V+ +
Sbjct: 60 HDVLAQAQSGTGKTGTFSIAALQRID----TSVKAPQALMLAPTRELALQIQKVVMALAF 115
Query: 139 HTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADR 198
H IGG + E + I++GTPGR+ ++ Q F T +++ +LDEAD
Sbjct: 116 HMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADE 174
Query: 199 CLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSS 258
L GFK + I LP + Q +L SAT + L +T + +L
Sbjct: 175 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV-----LEVTTKFMRNPVRIL-VKKDE 228
Query: 259 ATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGIS 317
T E ++Q Y+ V + K + L S ++ ++F ++ ++V + R + +S
Sbjct: 229 LTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVS 288
Query: 318 LMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
++ Q++ R + +F L STD++ARGID V VI D P + + YIH
Sbjct: 289 AIYSDLPQQE--RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
Query: 378 RVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
R+GR RFG++G ++ +T E+ G ++ L+
Sbjct: 347 RIGRGGRFGRKGVAINFVT-NEDVGAMRELE 376
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 166 bits (420), Expect = 1e-40
Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 43/394 (10%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI-- 100
++D + L+ + + + + T IQR++IP+ L+ D++G A+TGSGKT AFLIP++
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452
Query: 101 ----EKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE 156
K+ R + +D G A+I++PTRELA QI E K GK VIGG +
Sbjct: 453 ITTLPKIDRIEESDQ-GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511
Query: 157 KERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNL 215
R+ I+I TPGR++ ++ S +VLDEADR +DMGF+ + I+ ++
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRY-LVLSRCTYVVLDEADRMIDMGFEPDVQKILEHM 570
Query: 216 PAS--------------------------RQTLLFSATQSQSLDDLARLSLTDYKQVGTM 249
P S RQT++F+AT +++ LAR L
Sbjct: 571 PVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLR------RP 624
Query: 250 EVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETF 309
V+ S+ E ++Q + +K L + ++ +I+F++ K + ++
Sbjct: 625 AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSL 684
Query: 310 RKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP 369
K+ G + LHG + Q R L L +TDV RGID V V+ D
Sbjct: 685 EKM--GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 370 EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
++++ YIHR+GR R GK G ++ LT E+ F
Sbjct: 743 KNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVF 776
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 166 bits (420), Expect = 1e-40
Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 43/394 (10%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI-- 100
++D + L+ + + + + T IQR++IP+ L+ D++G A+TGSGKT AFLIP++
Sbjct: 393 WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 452
Query: 101 ----EKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE 156
K+ R + +D G A+I++PTRELA QI E K GK VIGG +
Sbjct: 453 ITTLPKIDRIEESDQ-GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511
Query: 157 KERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNL 215
R+ I+I TPGR++ ++ S +VLDEADR +DMGF+ + I+ ++
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRY-LVLSRCTYVVLDEADRMIDMGFEPDVQKILEHM 570
Query: 216 PAS--------------------------RQTLLFSATQSQSLDDLARLSLTDYKQVGTM 249
P S RQT++F+AT +++ LAR L
Sbjct: 571 PVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLR------RP 624
Query: 250 EVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETF 309
V+ S+ E ++Q + +K L + ++ +I+F++ K + ++
Sbjct: 625 AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSL 684
Query: 310 RKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP 369
K+ G + LHG + Q R L L +TDV RGID V V+ D
Sbjct: 685 EKM--GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 370 EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
++++ YIHR+GR R GK G ++ LT E+ F
Sbjct: 743 KNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVF 776
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 166 bits (420), Expect = 1e-40
Identities = 108/361 (29%), Positives = 184/361 (50%), Gaps = 18/361 (4%)
Query: 45 DLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY 104
+L IS + +K L KL IQ+ + +++G D++G A+TG+GKTLAF IP+I+K+
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 105 REKWTDMDGLG----ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI 160
K+ G G L+++PTRELA Q+ + + + + GG + + ++
Sbjct: 168 --KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRQL 223
Query: 161 SR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR 219
+++ +GTPGR++ M + N S +Q +VLDEAD+ L +GF ++ I+ LP R
Sbjct: 224 DYGVDVAVGTPGRVIDLMKRGA-LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 220 QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
Q+++FSAT + L + L + V L +S + + I + I
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVD----LVGDSDQKLADGITTYSIIADSYGRASI 338
Query: 280 LFSFIKSHLKS-KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338
+ + H K K IVF + + + + LHG Q+ R TL F
Sbjct: 339 IGPLVTEHAKGGKCIVFTQTKRDADRLSYALAR---SFKCEALHGDISQSQRERTLAGFR 395
Query: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398
L +TDV ARG+D P+VD +I + P + +T++HR GR R GK+G ++++ + +
Sbjct: 396 DGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQD 455
Query: 399 E 399
+
Sbjct: 456 Q 456
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 166 bits (419), Expect = 2e-40
Identities = 121/401 (30%), Positives = 201/401 (49%), Gaps = 33/401 (8%)
Query: 8 NTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEI 67
N Q+ +I + I +ET + P + N F ++ + E ++ ++K T +
Sbjct: 117 NEQENTVINFEAYEDIP-IETSGDNVPPPV---NTFAEIDLGEALNLNIQRCKYVKPTPV 172
Query: 68 QRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMD-GLG-----ALIISP 121
QR +IP+ G D++ A+TGSGKT AF P+I + +++ + G+ A+I+SP
Sbjct: 173 QRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSP 232
Query: 122 TRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQA 180
TRELA QI++ K T + GG V + + R ++IL+ TPGR+ +++
Sbjct: 233 TRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERG 292
Query: 181 VGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNL----PASRQTLLFSATQSQSLDDLA 236
+ ++ L LDEADR LDMGF+ + I+ + P RQT+LFSAT + + LA
Sbjct: 293 -RVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLA 351
Query: 237 RLSLTDY-----KQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK 291
L++Y +VG+ L +S ++S++ +D+L + ++ + K
Sbjct: 352 SDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHL-------MDLLHAQRENGNQGK 404
Query: 292 ---LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFST 348
+VF+ + K + E + + G +HG + Q R L F + L +T
Sbjct: 405 QALTLVFVETKKGADSL-ENWLCIN-GFPATTIHGDRSQQEREVALRSFKTGRTPILVAT 462
Query: 349 DVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
DV ARG+D P V V+ D P D+D Y+HR+GR R G G
Sbjct: 463 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 166 bits (419), Expect = 2e-40
Identities = 110/340 (32%), Positives = 173/340 (50%), Gaps = 14/340 (4%)
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWT-DMDGLGALIISPTR 123
T IQ+ SIP+ G D++ A+TGSGKT AFL+P++ KL + ++ +I+SPTR
Sbjct: 269 TPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTR 328
Query: 124 ELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVG 182
ELA+QI+ K + G+V GG + E I+R +++I TPGR+L +D+
Sbjct: 329 ELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF- 387
Query: 183 FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA--SRQTLLFSATQSQSLDDLARLSL 240
+ + +VLDEADR LDMGF + I+ ++ QTL+FSAT + + +A L
Sbjct: 388 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL 447
Query: 241 TDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSK 300
+Y V V A S ++Q+ EV K L + S IVF+ + +
Sbjct: 448 KNYVFVAIGIVGGACSD------VKQTIYEVNKYAKRSKLIEIL-SEQADGTIVFVETKR 500
Query: 301 QVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSV 360
F+ + + +HG + Q+ R + L F L +T V +RG+D ++
Sbjct: 501 GADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 558
Query: 361 DWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
VI D P +D Y+HR+GR R G G++ PE++
Sbjct: 559 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 598
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 166 bits (419), Expect = 2e-40
Identities = 111/360 (30%), Positives = 191/360 (52%), Gaps = 17/360 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + E+ L+G+ F K + IQ+ +I ++G DV+ A++G+GKT F I ++++
Sbjct: 18 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 77
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-- 160
+ T + ALI++PTRELA QI V+ +G++ + IGG +V E RI
Sbjct: 78 ID----TSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVR-EDARILE 132
Query: 161 SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
S ++++GTPGR+ +++ V T ++L VLDEAD L GFK + + LP Q
Sbjct: 133 SGCHVVVGTPGRVYDMINRKV-LRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQ 191
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+L SAT + +++R + D + +L T E ++Q Y+ V + KL
Sbjct: 192 VILLSATMPPDVLEVSRCFMRD-----PVSIL-VKKEELTLEGIKQFYVNVKQENWKLGT 245
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L + ++ ++F ++ ++V + + +S MH G +Q R + +F
Sbjct: 246 LCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMH--GDMEQRDREVIMKQFRS 303
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + + YIHR+GR RFG++G ++ +T ++
Sbjct: 304 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 363
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 165 bits (418), Expect = 2e-40
Identities = 116/357 (32%), Positives = 178/357 (49%), Gaps = 11/357 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP-VIE 101
F++ S + + L E F + T IQ + P++L G D++G A+TGSGKTL+F++P ++
Sbjct: 89 FEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVH 148
Query: 102 KLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
++ DG L+++PTREL MQI +V+ + + V GG + +
Sbjct: 149 AKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALH 208
Query: 162 R-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
++I TPGR++ DQ S + LVLDEADR LDMGF+ L II A+RQ
Sbjct: 209 EGAEVVIATPGRLIDLHDQGHA-PLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQ 267
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDIL 280
TL++SAT + + LA + +Y ++V+ N T ++Q +K D L
Sbjct: 268 TLMWSATWPREVRGLAESYMNEY-----IQVVVGNEELKTNSKIKQIVEVCSGREKEDKL 322
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRA 340
+ + K+IVF + + + + G LHG + Q R + LD F
Sbjct: 323 IGVLDNFKGDKVIVFCNMKRTCDDLEYVLNR--SGYGAAALHGDKSQNIRDKVLDDFRSG 380
Query: 341 QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFG-KEGKSLIMLT 396
+ L +T+V RG+D V VI D P + Y+HR+GR AR KEG S T
Sbjct: 381 RRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFT 437
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 164 bits (415), Expect = 5e-40
Identities = 121/415 (29%), Positives = 204/415 (49%), Gaps = 29/415 (6%)
Query: 5 QKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKL 64
+K +T+Q LIR++ + E+ P I F D+ L+ LK+ +
Sbjct: 69 RKMSTKQMDLIRKQ-----WHITVNGEDIPPPIKN---FMDMKFPSPLLRMLKDKGIMHP 120
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG----ALIIS 120
T IQ + +P+ L G D++G A TGSGKTL F++P+I +E+ G AL+I
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 121 PTRELAMQIYEVLSKI------GKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRI 173
P+RELA Q Y+V+ + + + L IGG D+ + + + + ++I++ TPGR+
Sbjct: 181 PSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRL 240
Query: 174 LQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLD 233
+ + + +LL LDEADR +D+GF+ + + ++ + RQTLLFSAT +
Sbjct: 241 KDILAKKK-MSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQ 299
Query: 234 DLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLI 293
A +L K V +N + A + Q V K+ L ++ ++
Sbjct: 300 IFATSALV--KPV----TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK-TTPPVL 352
Query: 294 VFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVAR 353
+F + V ++E L G+ + +HG + Q R + F + L +TDV ++
Sbjct: 353 IFCENKADVDDIHEYL--LLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASK 410
Query: 354 GIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
G+DFP + VI D P +++ Y+HR+GR R GK G + + + E L LK
Sbjct: 411 GLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLK 465
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 164 bits (414), Expect = 6e-40
Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 11/356 (3%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREK 107
IS + L LK+ + K T IQ ++IP + G D++G AKTGSGKT+AFL+P+ + ++
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 108 -WTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INI 165
+ +G A+I++PTRELA+QI + K K V GG ++ + + R I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 166 LIGTPGRILQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLL 223
++ TPGR++ + G N + +VLDEADR DMGF+ + I++N+ RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 224 FSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSF 283
FSAT ++++ LAR L+ +V S ++Q I + K L
Sbjct: 559 FSATFPRAMEALARRILSKPIEV------QVGGRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 284 IKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHV 343
+ H + V + KQ H ++ M LHG Q R ++ F
Sbjct: 613 L-GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 671
Query: 344 CLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +T V ARG+D + V+ CP + Y+HR GR R G +G + +T ++
Sbjct: 672 LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQ 727
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 164 bits (414), Expect = 6e-40
Identities = 113/370 (30%), Positives = 185/370 (49%), Gaps = 15/370 (4%)
Query: 25 DLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGA 84
D + V E I F D+ I E L+G+ E F K + IQ+ ++ L+G DV+
Sbjct: 19 DDDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQ 78
Query: 85 AKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSA 144
A++G+GKT + V + + T + ALI+SPTRELA Q + + IG H A
Sbjct: 79 AQSGTGKTSMIALSVCQVVD----TSSREVQALILSPTRELATQTEKTIQAIGLHANIQA 134
Query: 145 GLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG 203
IGG V + ++ ++++ GTPGR+ M + T ++LL+LDE+D L G
Sbjct: 135 HACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRRSLRTRAIKLLILDESDEMLSRG 193
Query: 204 FKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES 263
FK + + LP Q L SAT + ++ +T+ +++L T E
Sbjct: 194 FKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTE-----PVKIL-VKRDELTLEG 247
Query: 264 LQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q ++ V + K D L + ++ ++F ++ ++V ++ E R +S MH
Sbjct: 248 IKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMH-- 305
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G Q R +++F L +TDV ARGID V VI D P + + YIHR+GR+
Sbjct: 306 GDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 365
Query: 383 ARFGKEGKSL 392
RFG++G ++
Sbjct: 366 GRFGRKGVAI 375
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 163 bits (413), Expect = 8e-40
Identities = 117/368 (31%), Positives = 194/368 (51%), Gaps = 18/368 (4%)
Query: 34 NPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTL 93
NP + FQ P + ++ +K+A F K T IQ ++ P+ L+G D++G A+TG+GKTL
Sbjct: 238 NPTCTFDDAFQCYP---EVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTL 294
Query: 94 AFLIPVIEKLYREKWT--DMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGK 151
+L+P L + + G L+++PTRELA+Q+ K S + GG
Sbjct: 295 CYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGN 354
Query: 152 DVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAI 211
+E ++I+I TPGR L + + N N+ LVLDEAD+ LDMGF+ + I
Sbjct: 355 RDEQIEELKKGVDIIIATPGR-LNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKI 413
Query: 212 INNLPASRQTLLFSATQSQSLDDLARLSLTD--YKQVGTMEVLNANSSSATPESLQQSYI 269
+ ++ RQT++ SAT S+ LA+ L + VGT++++ +S ++Q+ I
Sbjct: 414 LLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSS-------VKQNII 466
Query: 270 EVPLPDKLDILFSFIKSHLKS-KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQT 328
+K + +F++S + K+IVF+S + + IS+ LHG ++Q
Sbjct: 467 VTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDL--ILGNISVESLHGDREQR 524
Query: 329 ARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKE 388
R + L+ F + L +TD+ +RG+D V V D P +++ Y+HR+GR R G+
Sbjct: 525 DREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRT 584
Query: 389 GKSLIMLT 396
G S+ LT
Sbjct: 585 GVSITTLT 592
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 163 bits (412), Expect = 1e-39
Identities = 136/437 (31%), Positives = 202/437 (46%), Gaps = 68/437 (15%)
Query: 47 PISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYRE 106
P+S L+ L+ F++ TEIQ++SIP+ ++G DV+G A TGSGKTLA+ IP++EKL
Sbjct: 177 PLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISN 236
Query: 107 KWTDMDGLGALIISPTRELAMQIYEVLSKIGK----HTTFSAGLVIGGKDVTFEKERISR 162
+LI +PTRELA Q+ + L KI + + +S + GG + ++ +
Sbjct: 237 FSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKY 296
Query: 163 IN---ILIGTPGRILQ--HMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
N I+I TPGR L+ D + S + L+LDEADR L G + II +L
Sbjct: 297 DNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLV 356
Query: 218 SR--------------QTLLFSATQSQSLDDLARLS--LTDYKQVGTMEVLNA------- 254
R QTL+FSAT S L D S + D + + LNA
Sbjct: 357 ERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMS 416
Query: 255 -------------NSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQ 301
N S +++S IE P P + D+ + + ++F ++
Sbjct: 417 KIHFNSKPVIIDTNPESKVSSQIKESLIECP-PLERDLYCYYFLTMFPGTTLIFCNAIDS 475
Query: 302 VHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ----------------HVCL 345
V + L GI +H Q R ++L++F + L
Sbjct: 476 VKKLTVYLNNL--GIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVL 533
Query: 346 FSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK 405
++DV ARG+D P V VI P D YIHR GR AR G EG S ++ +P+E G L+
Sbjct: 534 IASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLR 593
Query: 406 RLK----TKNIEPSRLN 418
+L+ TKN + LN
Sbjct: 594 KLRKTLATKNSVSTDLN 610
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 163 bits (412), Expect = 1e-39
Identities = 133/497 (26%), Positives = 233/497 (46%), Gaps = 85/497 (17%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKD------------------LETKVEEYNPKIAKANLFQ 44
KK K N +++K +++ +KI + +E +VEE + + +
Sbjct: 136 KKAKRNKEKKKEKKKKKQKKINEAAKNQDASAAVSCDGDDTVEEQVEEEEIP-PEFSAWS 194
Query: 45 DLPISEQTLKGLKEAAFIKLTEIQRESIPLSL-KGHDVLGAAKTGSGKTLAFLIPVIEKL 103
+ + +K + F + T+IQ+ ++ +G DV+GAA+TGSGKTLAF +P++++L
Sbjct: 195 SMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRL 254
Query: 104 YRE----------------KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLV 147
E K+ L ALII+PTRELA+Q+ E L K+ + +
Sbjct: 255 LDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPI 314
Query: 148 IGGKDVTFEKERIS-RINILIGTPGRILQHMDQAVGF--NTSNLQLLVLDEADRCLDMGF 204
+GG ++ R+ + I++ TPGR+ + M +L VLDEADR ++ G
Sbjct: 315 VGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGH 374
Query: 205 KRTLDAIINNLPAS------------------------RQTLLFSATQSQSLDDLARLSL 240
R L +I++ LP + RQT +FSAT + S D +L
Sbjct: 375 FRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKR 434
Query: 241 TDYK-------QVGTMEVLNANS-------------SSATPESLQQSYIEVPLPDKLDIL 280
K +V ++EVL+ + +S +++S+I+ +K L
Sbjct: 435 GSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYL 494
Query: 281 FSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRA 340
+ + H + + IVF +S + + + L G+ + L KQ AR +++D+F +
Sbjct: 495 YYILSVHGQGRTIVFCTSVTDLRHISGLLKIL--GLDVCTLFSEMKQRARLKSIDRFRAS 552
Query: 341 QHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
++ L +TD+VARGID +V +I P + Y+HR GR AR +G S+ ++ P E
Sbjct: 553 ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNET 612
Query: 401 EGFLKRLKTKNIEPSRL 417
F K+ ++E ++
Sbjct: 613 SKFYTLCKSFSMESVKI 629
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 162 bits (411), Expect = 1e-39
Identities = 122/399 (30%), Positives = 192/399 (47%), Gaps = 28/399 (7%)
Query: 31 EEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSG 90
+E+N + + +S + L L +A F K IQ IP + G D++G A TGSG
Sbjct: 112 DEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSG 171
Query: 91 KTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGG 150
KTLAF IP++E R D + AL+++PTRELA QI + I + GG
Sbjct: 172 KTLAFGIPILEHCLRN--VDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGG 229
Query: 151 KDVTFEKERISRI-NILIGTPGRILQHMDQA-VGFNTSNLQLLVLDEADRCLDMG----F 204
V ++ +++ ++++ TPGR+ +++ + N ++ LVLDEADR L
Sbjct: 230 LAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEEL 289
Query: 205 KRTLDAIINNLPASRQTLLFSATQSQSLDDLARLS----------------LTDYKQVGT 248
+ L+ + N + RQT +FSAT + L + + L + + G
Sbjct: 290 SKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGK 349
Query: 249 MEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYET 308
+ L+AN SA + + IE P + D+ ++ K +VF + + + +
Sbjct: 350 PKFLDANPQSAVASRVLEGLIECA-PAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPF 408
Query: 309 FRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDC 368
+L+ + LH + Q R ++L+KF L TDV ARGID PSV VI
Sbjct: 409 LNELK--VPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHV 466
Query: 369 PEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRL 407
P D Y+HR GR AR ++G S++M P+E LKRL
Sbjct: 467 PHTADMYVHRSGRTARANEDGVSILMCGPKELSQ-LKRL 504
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 162 bits (411), Expect = 1e-39
Identities = 128/390 (32%), Positives = 199/390 (50%), Gaps = 35/390 (8%)
Query: 15 IRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPL 74
+++ DS D + KV + K+ + F+DL S +K L + + T IQ+ IP
Sbjct: 74 VKDPDSVAAADGDIKVVT-SEKVKTLSSFKDL-CSPLLIKALGKE-YSAPTIIQKYCIPS 130
Query: 75 SLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLS 134
+ G +++ A TG GKT+ FLIP+IE+ + K A IISPTREL QI S
Sbjct: 131 LVDGRNLICRAPTGMGKTMCFLIPIIERHRQMKKPQ-----ACIISPTRELCEQIRVEAS 185
Query: 135 KIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLD 194
K+ + + G K + S ++I++ TPGR++ + + + S +++ VLD
Sbjct: 186 KLVAGSRIRVVSIYGKKQ---DLPSYSGVDIVVATPGRLIDLLHRKK-VDLSEIRMFVLD 241
Query: 195 EADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNA 254
EAD+ LDMGF+ + I +P + QT LFSAT S L + L + K ++
Sbjct: 242 EADKLLDMGFEIPIREIHGFVPKNTQTCLFSATYSPKLTRMINYFLPEDK-------VSI 294
Query: 255 NSSSATPESLQQSYIEVPLPDKLDILFSFIKS---HLKS---------KLIVFLSSSKQV 302
SS T ++++Q +EV +K +L + +K +LK K++VF+ +
Sbjct: 295 EISSETLKNIRQEIVEVR--NKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSEC 352
Query: 303 HFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDW 362
V + +K GI + LHG ++Q R E L F + + +T V ARGID V
Sbjct: 353 GEVEKVLKK--SGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKL 410
Query: 363 VIQVDCPEDVDTYIHRVGRAARFGKEGKSL 392
VI D P+D+ YIHR+GR R GK GKS+
Sbjct: 411 VINYDIPKDIKEYIHRIGRTGREGKSGKSI 440
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 162 bits (409), Expect = 2e-39
Identities = 113/367 (30%), Positives = 186/367 (49%), Gaps = 29/367 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + E + ++ + + T +Q+ +IP+ D++ A+TGSGKT AFL+P++ +
Sbjct: 180 FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ 239
Query: 103 LYRE------KWTDMDGLG--------ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVI 148
+Y + K +G +L+++PTRELA+QIYE K + +V
Sbjct: 240 IYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 299
Query: 149 GGKDVTFEKERISR-INILIGTPGRILQHMDQA-VGFNTSNLQLLVLDEADRCLDMGFKR 206
GG D+ + + R ++L+ TPGR++ M++ +G + + LVLDEADR LDMGF+
Sbjct: 300 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFC--KYLVLDEADRMLDMGFEP 357
Query: 207 TLDAII--NNLPAS--RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPE 262
+ I+ + +P R T++FSAT + + LAR L +Y + V +T E
Sbjct: 358 QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV------GSTSE 411
Query: 263 SLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++ Q + V DK L + + L + +K+ E F G + +H
Sbjct: 412 NITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFL-YHEGYACTSIH 470
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G + Q R E L +F + L +T V ARG+D +V VI D P D++ Y+HR+GR
Sbjct: 471 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRT 530
Query: 383 ARFGKEG 389
R G G
Sbjct: 531 GRVGNLG 537
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 162 bits (409), Expect = 2e-39
Identities = 118/401 (29%), Positives = 200/401 (49%), Gaps = 39/401 (9%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGH-DVLGAAKTGSGKTLAFLIPVIEKLYRE 106
+ + L+ +++ F + TEIQ +P +++ DVLGAA+TGSGKTLAF IP++ +L
Sbjct: 162 LPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLES 221
Query: 107 -------KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKER 159
+ T++ G ALI++PTREL +QI + ++ + T A ++GG ++
Sbjct: 222 SDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERI 281
Query: 160 IS--RINILIGTPGRILQHMDQAVG----FNTSNLQLLVLDEADRCLDMGFKRTLDAIIN 213
IS R +I++ TPGR+ M +A +L+ LV+DE DR ++ G+ L I+N
Sbjct: 282 ISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILN 341
Query: 214 NLPASR-----QTLLFSATQS-QSLDDLARLSLTDYKQVGTME----------------- 250
+ QTL+FSAT + D+A K++ + +
Sbjct: 342 KIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHK 401
Query: 251 VLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFR 310
V++ T L ++ I + D ++ + + IVF++S +Y +
Sbjct: 402 VIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRLYSVLK 461
Query: 311 KLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPE 370
+ I M LH + Q R + L+KFS +++ L +TDV ARG+D +D VI P+
Sbjct: 462 SVN--IDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPK 519
Query: 371 DVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKN 411
V+ YIHR GR AR G +++++ P + ++K K N
Sbjct: 520 KVEIYIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLN 560
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 161 bits (408), Expect = 3e-39
Identities = 101/360 (28%), Positives = 193/360 (53%), Gaps = 15/360 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
++ L + LK +++ + + +Q SIP L G ++L +K G+GKT ++++P++
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
+ + + + +I+ P RELA+QI + ++ + T + V+GG + + R+S
Sbjct: 170 INSSELS----IQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSN 225
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQT 221
+++++GTPGRI+ +++ VG S +LV DEAD+ LD+ F T+ +++ LP +Q
Sbjct: 226 GVHVMVGTPGRIVDLVEKRVG-TLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQM 284
Query: 222 LLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
LL+SAT + R + + + M+ L P ++Q Y V +KL L
Sbjct: 285 LLYSATFPYFVTGFIRRYMKNPLCINLMKEL-------APVGVKQFYTYVKPSEKLLCLK 337
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
S + ++ ++F +S K V + + + G+ +H + Q R F + +
Sbjct: 338 SLLLRLSINQCVIFCNSIKTVELL--AMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGK 395
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L +TD++ RG+D P+ ++VI D + ++Y+HR+GRA RFG G ++ ++T EE+E
Sbjct: 396 CKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKE 455
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 161 bits (408), Expect = 3e-39
Identities = 107/328 (32%), Positives = 172/328 (51%), Gaps = 24/328 (7%)
Query: 85 AKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSA 144
A+TG+GKTLAF IP+++KL D G+ ALI++PTRELA QI E + +GK T
Sbjct: 190 ARTGTGKTLAFAIPILQKLS----VDPYGIYALILTPTRELAFQIAEQFTALGKPITLKC 245
Query: 145 GLVIGGKDVTFEKERIS-RINILIGTPGRILQHMDQ---AVGFNTSNLQLLVLDEADRCL 200
+++GG+ + + +S R ++++ TPGR+ ++ + +Q VLDEADR L
Sbjct: 246 SVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRML 305
Query: 201 DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTD---YKQVGTMEVLNANSS 257
+ + L I ++ RQTLL SAT + +++ L R+S ++ G
Sbjct: 306 EGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKG-------KDD 358
Query: 258 SATPESLQQSYIEVPLPDKLDILFSFIKSHL----KSKLIVFLSSSKQVHFVYETFRKLQ 313
+T + L+Q Y+ P+ K L +K++ KS +++F + ++ + F L
Sbjct: 359 ESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGL- 417
Query: 314 PGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVD 373
G + LH + Q R L F + TDV +RG+D P VD V+ + P+
Sbjct: 418 -GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPK 476
Query: 374 TYIHRVGRAARFGKEGKSLIMLTPEEEE 401
TYIHRVGR+AR G+ G +L +T + E
Sbjct: 477 TYIHRVGRSARAGRFGSALSFVTQYDVE 504
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 160 bits (406), Expect = 5e-39
Identities = 125/394 (31%), Positives = 199/394 (49%), Gaps = 53/394 (13%)
Query: 8 NTQQRKLIRE----RDSQKIKDLETKV-EEYNPKIAKANLFQDLPISEQTLKGLKEAAFI 62
N ++R+ I+ +++ I +L V ++ K+ + F +L + + + +
Sbjct: 192 NQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKM 251
Query: 63 K-LTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY--REKWTDMDGLGALII 119
+T +Q++SIP+ L+G D L ++TGSGKTLA+ IPV++ L K DG AL++
Sbjct: 252 SSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVL 311
Query: 120 SPTRELAMQIYEVLSKIGKHTTFSA-GLVIGGKDVTFEKERISR-INILIGTPGRILQHM 177
PTRELA+Q ++ + K+ K T+ G+++GG+ EK R+ + INILI TPGR++ H+
Sbjct: 312 VPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHI 371
Query: 178 DQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA---SRQTLLFSATQSQSLDD 234
+ S L+ LV DEADR LD+GF++ + I+N + A RQ +L SAT ++ +
Sbjct: 372 KSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTR 431
Query: 235 LARLSLTDYKQVGTM----EVLNAN----------------SSSATPESLQQSYIEVPLP 274
LA +SL D + + + LN S A PESL+Q VP
Sbjct: 432 LADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSK 491
Query: 275 DKLDILFSFIKSHLK----SKLIVFLSSSKQVHFVYETFRKL------------QPGISL 318
+L L +FI K K++VF SS + V F Y F + P S+
Sbjct: 492 LRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASM 551
Query: 319 ----MHLHGRQKQTARTETLDKFSRAQHVCLFST 348
+ LHG +Q RT +FS ++ L T
Sbjct: 552 RLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 160 bits (406), Expect = 5e-39
Identities = 119/394 (30%), Positives = 200/394 (50%), Gaps = 32/394 (8%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + ++ + + + K T +Q+ SIP L D++ A+TGSGKT AFL+P+I+
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 184
Query: 103 LYREKWTDM-------DGLG-----ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGG 150
+ DM +G AL++SPTRELA+QI++ +K + ++ GG
Sbjct: 185 IL-AGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGG 243
Query: 151 KDVTFEKERISRI----NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKR 206
++ +++++R+ +ILI TPGR++ ++Q + + LVLDEADR LDMGF+
Sbjct: 244 RE--NYRDQVNRLRAGTHILIATPGRLIDIIEQGF-IGLAGCRYLVLDEADRMLDMGFEP 300
Query: 207 TLDAII-NNLP--ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES 263
+ I+ +P +R T +FSAT + + LA+ L D L +T E+
Sbjct: 301 QIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKD-----NYIFLAVGRVGSTSEN 355
Query: 264 LQQSYIEVPLPDKLDILFSFI-KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q + V +K L + H ++ ++VF+ + + + + + Q I + +H
Sbjct: 356 IEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQ--IRSVSIH 413
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G KQ R L+ F Q L +T V ARG+D P+V VI D P D D Y+HR+GR
Sbjct: 414 GDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRT 473
Query: 383 ARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSR 416
R G G + ++ G + LK +E ++
Sbjct: 474 GRCGNLGIATSFFN-DKNRGIGRDLKNLIVESNQ 506
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 160 bits (406), Expect = 5e-39
Identities = 119/394 (30%), Positives = 200/394 (50%), Gaps = 32/394 (8%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + ++ + + + K T +Q+ SIP L D++ A+TGSGKT AFL+P+I+
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 181
Query: 103 LYREKWTDM-------DGLG-----ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGG 150
+ DM +G AL++SPTRELA+QI++ +K + ++ GG
Sbjct: 182 IL-AGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGG 240
Query: 151 KDVTFEKERISRI----NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKR 206
++ +++++R+ +ILI TPGR++ ++Q + + LVLDEADR LDMGF+
Sbjct: 241 RE--NYRDQVNRLRAGTHILIATPGRLIDIIEQGF-IGLAGCRYLVLDEADRMLDMGFEP 297
Query: 207 TLDAII-NNLP--ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPES 263
+ I+ +P +R T +FSAT + + LA+ L D L +T E+
Sbjct: 298 QIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKD-----NYIFLAVGRVGSTSEN 352
Query: 264 LQQSYIEVPLPDKLDILFSFI-KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLH 322
++Q + V +K L + H ++ ++VF+ + + + + + Q I + +H
Sbjct: 353 IEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQ--IRSVSIH 410
Query: 323 GRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRA 382
G KQ R L+ F Q L +T V ARG+D P+V VI D P D D Y+HR+GR
Sbjct: 411 GDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRT 470
Query: 383 ARFGKEGKSLIMLTPEEEEGFLKRLKTKNIEPSR 416
R G G + ++ G + LK +E ++
Sbjct: 471 GRCGNLGIATSFFN-DKNRGIGRDLKNLIVESNQ 503
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 160 bits (406), Expect = 5e-39
Identities = 115/362 (31%), Positives = 183/362 (49%), Gaps = 11/362 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + ++ ++++ + + T IQ +IP +L G DVLG AKTGSGKT A+L P I
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326
Query: 103 LYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERIS 161
+ + +G A+I+ PTRELA+Q+++ K K + GG + +
Sbjct: 327 IMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQ 386
Query: 162 R--INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR 219
+++ TPGRI+ + N LV DEADR DMGF+ + +I +++ R
Sbjct: 387 NEGAEMVVCTPGRIIDLVKMGAT-NFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR 445
Query: 220 QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
Q L+FSAT Q ++ LAR +L D ++ EV AN+ + Q+ +V L +
Sbjct: 446 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQ-DVKLHWLIRN 504
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L F K+++F++ V + + I L LHG Q R E L KF +
Sbjct: 505 LVEFASL---GKVLIFVTKKLDSEDVAKKLKMKDFDIVL--LHGDMLQAERNENLLKFRK 559
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
+ L +TDV ARG+D + VI D D+DT++HR+GR R G +G + ++T ++
Sbjct: 560 KSQI-LVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKD 618
Query: 400 EE 401
E
Sbjct: 619 IE 620
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 159 bits (401), Expect = 2e-38
Identities = 111/400 (27%), Positives = 202/400 (49%), Gaps = 27/400 (6%)
Query: 3 KKQKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFI 62
+++K + LI K+K + + + +P + A F +L ++ + LKG+ F
Sbjct: 55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNSP-LYSAKSFDELGLAPELLKGIYAMKFQ 113
Query: 63 KLTEIQRESIPLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIIS 120
K ++IQ ++PL L +++ +++G+GKT AF + ++ ++ E + A+ ++
Sbjct: 114 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ----AICLA 169
Query: 121 PTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQA 180
P+RELA Q EV+ ++GK T ++ L++ +FEK + +++GTPG +L M +
Sbjct: 170 PSRELARQTLEVVQEMGKFTKITSQLIVPD---SFEKNKQINAQVIVGTPGTVLDLMRRK 226
Query: 181 VGFNTSNLQLLVLDEADRCLDM-GFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLS 239
+ +++ VLDEAD LD G + LP Q +LFSAT + ++ A+
Sbjct: 227 L-MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAK-- 283
Query: 240 LTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP-DKLDILFSFIKSHLKSKLIVFLSS 298
K V L ++ ++++Q Y++ DK D+L I+F+++
Sbjct: 284 ----KIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVAT 339
Query: 299 SKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFP 358
K + +Y + +S+ LHG + R +D F + L +T+V+ARGID P
Sbjct: 340 KKTANVLYGKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 397
Query: 359 SVDWVIQVDCP------EDVDTYIHRVGRAARFGKEGKSL 392
+V V+ D P D TYIHR+GR RFG++G ++
Sbjct: 398 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI 437
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 158 bits (400), Expect = 3e-38
Identities = 119/414 (28%), Positives = 212/414 (50%), Gaps = 39/414 (9%)
Query: 19 DSQKIKDLETKVEEYNPKIAKANL------FQDLPISEQTLKGLKEAAFIKLTEIQRESI 72
++ K +D E+YN I +L +++ + + LK LK+ + + + IQR +I
Sbjct: 221 EAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAI 280
Query: 73 PLSLKGHDVLGAAKTGSGKTLAFLIPVI---EKLYREKWTDMD-GLGALIISPTRELAMQ 128
P+ L+ D++G A+TGSGKT AF+IP+I KL ++M G A++++PTRELA Q
Sbjct: 281 PVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
Query: 129 IYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSN 187
I +K + F V+GG + ++S+ +I++ TPGR+L +++ + F S
Sbjct: 341 IQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRL-FVLSQ 399
Query: 188 LQLLVLDEADRCLDMGFKRTLDAIINNLPAS-------------------RQTLLFSATQ 228
+V+DEADR LDMGF+ ++ I+++LP+S RQT++FSAT
Sbjct: 400 CTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATL 459
Query: 229 SQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHL 288
+ +LA+ L + + + N A Q+ + K + ++S+
Sbjct: 460 PPRVANLAKSYLIE-----PVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNR 514
Query: 289 KSK-LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFS 347
S +I+F++ + + + + + G + LHG + Q R +++ L +
Sbjct: 515 FSPPIIIFVNLKRNIEAIAKQLNAI--GWHAVTLHGSKSQEQRERAIEQLRNKTADILVA 572
Query: 348 TDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
TD+ RGID P+V V+ + + ++ Y HR+GR R GK G ++ L PE+ +
Sbjct: 573 TDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTD 626
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 158 bits (400), Expect = 3e-38
Identities = 109/362 (30%), Positives = 187/362 (51%), Gaps = 14/362 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
FQ P LK + +K T IQ ++ P+ L+G D++ A+TG+GKTL++L+P
Sbjct: 227 FQQYP---DLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH 283
Query: 103 LYREKWT--DMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI 160
L + + +G G L+++PTRELA+ + SK + + + GG++ + E I
Sbjct: 284 LDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDI 342
Query: 161 SR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR 219
S+ ++I+I TPGR L + N ++ LV+DEAD+ LDM F+ + I+ ++ R
Sbjct: 343 SKGVDIIIATPGR-LNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDR 401
Query: 220 QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
QT++ SAT ++ LA L D M V N + +++Q+ I +K +
Sbjct: 402 QTVMTSATWPDTVRQLALSYLKD-----PMIVYVGNLNLVAVNTVKQNIIVTTEKEKRAL 456
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
F+++ + ++ S K + + +Q GIS LHG +Q+ + ++ F
Sbjct: 457 TQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQ-GISAESLHGNSEQSDQERAVEDFKS 515
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD+V+RG+D V V D P ++D Y+HRVG R GK G S+ ++T +
Sbjct: 516 GNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRD 575
Query: 400 EE 401
+
Sbjct: 576 SK 577
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 158 bits (399), Expect = 3e-38
Identities = 109/373 (29%), Positives = 188/373 (50%), Gaps = 17/373 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + + E L+G+ F K + IQ+ I KG DV+ A++G+GKT F V+++
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L + AL+++PTRELA QI +V+ +G + +GG V E +RI +
Sbjct: 101 LD----FSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQ 155
Query: 163 --INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
+++++GTPGR+ + + N+++ VLDEAD L GFK + I LP Q
Sbjct: 156 AGVHVVVGTPGRVFDMLKRQ-SLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+FSAT ++ R ++ K V + T E ++Q Y+ V + KL+
Sbjct: 215 VGVFSATMPPEALEITRKFMS--KPVRIL----VKRDELTLEGIKQFYVNVEKEEWKLET 268
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L ++ ++ ++F+++ ++V ++ + R +S H G Q R + +F
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH--GDMDQNTRDIIMREFRS 326
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + Y+HR+GR+ RFG++G ++ +T ++
Sbjct: 327 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386
Query: 400 EEGFLKRLKTKNI 412
E K N+
Sbjct: 387 ERMLFDIQKFYNV 399
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 157 bits (398), Expect = 4e-38
Identities = 118/404 (29%), Positives = 187/404 (46%), Gaps = 51/404 (12%)
Query: 9 TQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQ 68
T+Q D+ + +ET + P + N F D+ + + ++ +++ T +Q
Sbjct: 122 TEQENTGINFDAYEDIPVETSGGDVPPPV---NTFADIDLGDALNLNIRRCKYVRPTPVQ 178
Query: 69 RESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG------ALIISPT 122
R +IP+ L D++ A+TGSGKT AF P+I + +++ + A+I+SPT
Sbjct: 179 RHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPT 238
Query: 123 RELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAV 181
RELA QI++ K T + GG + + + R +IL+ TPGR+ +++A
Sbjct: 239 RELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERA- 297
Query: 182 GFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP----ASRQTLLFSATQSQSLDDLAR 237
+ ++ L LDEADR LDMGF+ + I+ + RQT+LFSAT + LA
Sbjct: 298 RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAA 357
Query: 238 LSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLS 297
+++Y + V ++ + + Q V DK +SHL L
Sbjct: 358 DFMSNYIFLAVGRV------GSSTDLITQRVEFVQESDK--------RSHLMDLL----- 398
Query: 298 SSKQVHFVYETFRKLQPGISLMH------------LHGRQKQTARTETLDKFSRAQHVCL 345
H ET K + G + +HG + Q R L F + L
Sbjct: 399 -----HAQRETQDKTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPIL 453
Query: 346 FSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
+TDV ARG+D P V V+ D P D+D Y+HR+GR R GK G
Sbjct: 454 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 497
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 157 bits (397), Expect = 6e-38
Identities = 121/397 (30%), Positives = 201/397 (50%), Gaps = 30/397 (7%)
Query: 15 IRERDSQKIKDL---ETKVEEYNPKIAKANLFQDLPISEQTL-KGLKEAAFIKLTEIQRE 70
I+E++++K++ + + KV NP + ++ P E L + LK+ + T IQR
Sbjct: 22 IKEKEAKKLQGITKGKAKVTGNNP----VDPIEEFP--EGILCENLKKQNITECTTIQRY 75
Query: 71 SIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIY 130
+IP D+L A TGSGKT+A+L P+++KL G A+I++PTREL QIY
Sbjct: 76 AIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV---PGGYRAIIVAPTRELCEQIY 132
Query: 131 EVLSKIGKHTTFSAGLVIGGKDVTFEK--ERISRINILIGTPGRILQHMDQAVGFNTSNL 188
K+ T+ + + EK + + ++ IGTP R++Q + + F +
Sbjct: 133 RQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGLSFE--KV 190
Query: 189 QLLVLDEADRCLDMGFKRTLDAIINNLPASRQTL-LFSATQSQSLDDLARLSLTDYKQVG 247
+ V+DEADR + GF D I++ +S LFSAT +++LA++ D
Sbjct: 191 EFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVD----- 245
Query: 248 TMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKS-HLKSKLIVFLSSSKQVHFVY 306
+ ++ +AT Q+ K+ IL I + LK ++++F+ ++ +Y
Sbjct: 246 PIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALY 305
Query: 307 ET--FRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVI 364
F ++ G+ +HG Q R E L KF + + L +TD++ARGIDF V VI
Sbjct: 306 TELLFDEIHVGV----IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVI 361
Query: 365 QVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
D P+ V +YIHR+GR R G G+++ T E+ E
Sbjct: 362 NFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGE 398
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 156 bits (395), Expect = 1e-37
Identities = 132/410 (32%), Positives = 195/410 (47%), Gaps = 46/410 (11%)
Query: 21 QKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHD 80
QK+ KVE P +A + F+ LP + LK + T IQR S + G+D
Sbjct: 720 QKVVASTGKVEI--PDMASFDGFKILP--QDLHDNLKRMKMNRPTPIQRASFFPIMHGND 775
Query: 81 VLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGA------LIISPTRELAMQIYEVLS 134
V+ A TGSGKTLAFLIP + KL E D D LI++PTREL Q +
Sbjct: 776 VVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTAR 835
Query: 135 KIGKHTTFSAGLVIGGKDVTFEKERI---SRINILIGTPGRILQHMDQAVGFNTSNLQLL 191
++ T GL GG + + S++NIL+ T GR LQ A + S ++ +
Sbjct: 836 QLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGR-LQDFVNAGEVSLSKMKYI 894
Query: 192 VLDEADRCLDMG-FKRTLDAIINNLPASR--QTLLFSATQSQSL--DDLARLSLTDYKQV 246
VLDEADR +D F + II + P R QT+LFSA+ S+ L DDL + Y +
Sbjct: 895 VLDEADRMVDSNDFGEEVSKIIGS-PGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTML 953
Query: 247 GTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHL------------KSKLIV 294
+ AN E + Q + VP +K D ++ + K K ++
Sbjct: 954 QVDKFGTAN------EKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLI 1007
Query: 295 FLSSSKQVHFVYETFRKL--QPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVA 352
F++S K +T L G+S + +H Q Q R TLD F R ++ C+ +++V A
Sbjct: 1008 FVNSVK----FCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCA 1063
Query: 353 RGIDFPSVDWVIQVDCPE--DVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
RG++ +D V+ D P+ D Y++R+GR R G G S + E +
Sbjct: 1064 RGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVEND 1113
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 156 bits (395), Expect = 1e-37
Identities = 107/361 (29%), Positives = 184/361 (50%), Gaps = 17/361 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + + L+G+ F K + IQ+ I KG DV+ A++G+GKT F V+++
Sbjct: 43 FDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 102
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-- 160
L + AL+++PTRELA QI +V+ +G + A +GG V E +R+
Sbjct: 103 LD----ISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVR-EDQRVLQ 157
Query: 161 SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
S +++++GTPGR+ + + +++ VLDEAD L GFK + I LP+ Q
Sbjct: 158 SGVHVVVGTPGRVFDLLRRQ-SLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQ 216
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+FSAT ++ R + K V + T E ++Q Y+ V + KL+
Sbjct: 217 VGVFSATMPPEALEITRKFMN--KPVRIL----VKRDELTLEGIKQFYVNVDKEEWKLET 270
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L ++ ++ ++F+++ ++V ++ + R +S H G Q R + +F
Sbjct: 271 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH--GDMDQNTRDIIMREFRS 328
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + Y+HR+GR+ RFG++G ++ +T E+
Sbjct: 329 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
Query: 400 E 400
E
Sbjct: 389 E 389
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 156 bits (395), Expect = 1e-37
Identities = 113/340 (33%), Positives = 167/340 (48%), Gaps = 37/340 (10%)
Query: 28 TKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKT 87
T +EE P+ ++ P+SE ++ L + F T +Q E+IP DV+ A T
Sbjct: 8 TIIEEAPPRFSELKP----PLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAAT 63
Query: 88 GSGKTLAFLIPVIEKLYREKW--TDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAG 145
GSGKTLAFL+P IE + R + +IISPTREL+ QI++V + F+
Sbjct: 64 GSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV--RLDFAKC 121
Query: 146 LVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFK 205
+ T E+E N+LIGTPGR+ M + + NL++L+LDEADR LDMGF+
Sbjct: 122 REVEADMNTLEEEGA---NLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQ 178
Query: 206 RTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQ 265
+ ++ II+ LP R+T LFSATQ+Q++ DLA+ L+
Sbjct: 179 KQVNYIISRLPKQRRTGLFSATQTQAVADLAK------------------------AGLR 214
Query: 266 QSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQ--PGISLMHLHG 323
Y++ K L + + KL+VF + V + K+ IS HG
Sbjct: 215 NPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHG 274
Query: 324 RQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWV 363
+ Q R L F+ A L TDV ARG+D P + ++
Sbjct: 275 KMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 156 bits (395), Expect = 1e-37
Identities = 124/440 (28%), Positives = 203/440 (45%), Gaps = 61/440 (13%)
Query: 2 AKKQKHNTQQRKLIRERDSQKIKDLETKV---------------EEYNPKIAKANL---- 42
A+K++ + +K+ R+ D QK D E+YN I +
Sbjct: 334 AEKEQEKVRLKKMKRKEDKQKWDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPI 393
Query: 43 --FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI 100
+ + ++ + + + + + T IQR++IP+ L+ D++G A+TGSGKTLAFLIP++
Sbjct: 394 RSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLL 453
Query: 101 EKLYR----EKWTDMD-GLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTF 155
+ E+ D+D G A+I++PTRELA QI E +K G+ +V+GG
Sbjct: 454 SWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREE 513
Query: 156 EKERIS-RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINN 214
+ R+ I+I TPGR++ ++ + +VLDEADR +DMGF+ + I+
Sbjct: 514 QGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 572
Query: 215 LPAS-------------------------RQTLLFSATQSQSLDDLARLSLTDYKQVGTM 249
+P + RQT++F+AT +++ LAR T ++ T+
Sbjct: 573 MPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLAR---TYLRRPATV 629
Query: 250 EVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETF 309
+ S E +Q + DK L + + +I+F++ K + +
Sbjct: 630 YI---GSVGKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGL 686
Query: 310 RKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP 369
KL G + LHG + Q R L L +TDV RGID V VI D
Sbjct: 687 EKL--GYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMA 744
Query: 370 EDVDTYIHRVGRAARFGKEG 389
+ ++ Y HR+GR R GK G
Sbjct: 745 KTIEDYTHRIGRTGRAGKTG 764
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 155 bits (393), Expect = 2e-37
Identities = 121/403 (30%), Positives = 208/403 (51%), Gaps = 25/403 (6%)
Query: 8 NTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEI 67
N ++ K+ R+ KI T + + P L Q+ I+ + L+ + +A F T I
Sbjct: 26 NLRKEKINFLRNKHKIHVQGTDLPD--PIATFQQLDQEYKINSRLLQNILDAGFQMPTPI 83
Query: 68 QRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAM 127
Q ++IP+ L G ++L +A TGSGKTLAF IP++ +L K G ALIISPTRELA
Sbjct: 84 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL---KQPANKGFRALIISPTRELAS 140
Query: 128 QIYEVLSKIGKHTTFSAGLV----IGGKDVTFEKERISRINILIGTPGRILQHMDQ-AVG 182
QI+ L KI + T F ++ + K F + + +IL+ TP R++ + Q G
Sbjct: 141 QIHRELIKISEGTGFRIHMIHKAAVAAKK--FGPKSSKKFDILVTTPNRLIYLLKQDPPG 198
Query: 183 FNTSNLQLLVLDEADRCLD---MGFKRTLDAIINNLPASR-QTLLFSATQSQSLDDLARL 238
+ ++++ LV+DE+D+ + GF+ L +I + + + +FSAT + ++ +L
Sbjct: 199 IDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKL 258
Query: 239 SLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLS 297
+L + V + A +S+ E+++Q + V KL + +K ++VF+
Sbjct: 259 NLDNVISVS----IGARNSAV--ETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQ 312
Query: 298 SSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDF 357
S ++ ++ + GI++ +H + Q R T+ F + L T ++ARGIDF
Sbjct: 313 SIERAKELFHEL--IYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 370
Query: 358 PSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
V+ VI D P YIHR+GR R G +GK++ T +++
Sbjct: 371 KGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDK 413
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 155 bits (393), Expect = 2e-37
Identities = 119/382 (31%), Positives = 194/382 (50%), Gaps = 19/382 (4%)
Query: 24 KDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLG 83
K+ ET NP F + P L+ + + F K + IQ ++ P+ L+GHD++G
Sbjct: 269 KEGETSPPIPNPVWTFEQCFAEYP---DMLEEITKMGFSKPSPIQSQAWPILLQGHDMIG 325
Query: 84 AAKTGSGKTLAFLIP-VIEKLYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTT 141
A+TG+GKTLAFL+P +I Y+ G L+++PTRELA+QI E+ K
Sbjct: 326 IAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVLVLAPTRELALQI-EMEVKKYSFRG 384
Query: 142 FSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCL 200
A V GG + + + R I+I TPGR L + A + S + LVLDEADR L
Sbjct: 385 MKAVCVYGGGNRNMQISDLERGAEIIICTPGR-LNDLIMANVIDVSTITYLVLDEADRML 443
Query: 201 DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSS 258
DMGF+ + ++ ++ RQT++ SAT + LA+ + + QV G++++ +S
Sbjct: 444 DMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVK 503
Query: 259 ATPESLQQSYIEVPLPDKLDILFSFIKSHLKS-KLIVFLSSSKQVHFVYETFRKLQPGIS 317
+ ++ DK + + SF+K+ + K+I+F ++V + G
Sbjct: 504 QIIKLMEDDM------DKFNTITSFVKNMSSTDKIIIFCG--RKVRADDLSSELTLDGFM 555
Query: 318 LMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
+HG + Q R + + L +TDV +RG+D + VI D P +++ Y+H
Sbjct: 556 TQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVH 615
Query: 378 RVGRAARFGKEGKSLIMLTPEE 399
RVGR R G++G S+ T E+
Sbjct: 616 RVGRTGRAGRQGTSISFFTRED 637
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 155 bits (391), Expect = 3e-37
Identities = 130/430 (30%), Positives = 201/430 (46%), Gaps = 71/430 (16%)
Query: 48 ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGH---------DVLGAAKTGSGKTLAFLIP 98
+ + T + LK+ +L +Q++ IP L+ H D+ +A TGSGKTLAF IP
Sbjct: 144 LEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIP 203
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
+++ L + D + AL++ P ELA+Q+Y V+S++ T L+ + E+E
Sbjct: 204 IVQLLSQR--VDCK-VRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQE 260
Query: 159 RI---------SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGF----- 204
++ S+ +I++ TPGR++ H+ GF +L+ LV+DEADR +D F
Sbjct: 261 KLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLY 320
Query: 205 ------KRTLDAIINNLPA-------------SRQTLLFSATQSQSLDDLARLSLTD--- 242
K T D ++ A LLFSAT SQ + L L L
Sbjct: 321 HLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRL 380
Query: 243 YKQVGTMEVL-NANSSSA----------------TPESLQQSYIEVPLPDKLDILFSFIK 285
+ V TM VL +A A TP L + Y L K +F+ ++
Sbjct: 381 FATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVE 440
Query: 286 SHLKSKLIVFLSSSKQ---VHFVYET-FRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
+ + + F +SS Q + FV + F+K +S L G R E L F+ +
Sbjct: 441 KYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVS--ELSGNLSAKVRNERLRDFAAGK 498
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L +D +ARGID VD V+ + P + TYIHRVGR AR G++G ++ +LT ++
Sbjct: 499 INGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMT 558
Query: 402 GFLKRLKTKN 411
F K L N
Sbjct: 559 LFKKILSDAN 568
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 153 bits (387), Expect = 8e-37
Identities = 109/373 (29%), Positives = 187/373 (49%), Gaps = 17/373 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F + + E L+G+ F K + IQ+ I KG DV+ A++G+GKT F V+++
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L + AL+++PTRELA QI +V+ +G + +GG V E +RI +
Sbjct: 101 LDYA----LLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVR-EDQRILQ 155
Query: 163 --INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
+++++GTPGR+ M + +++ VLDEAD L GFK + I LP Q
Sbjct: 156 AGVHVVVGTPGRVFD-MLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+FSAT ++ R ++ K V + T E ++Q Y+ V D KL+
Sbjct: 215 VGVFSATMPPEALEITRKFMS--KPVRIL----VKRDELTLEGIKQFYVNVEKEDWKLET 268
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
L ++ ++ ++F+++ ++V ++ + R +S H G Q R + +F
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH--GDMDQNTRDIIMREFRS 326
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEE 399
L +TD++ARGID V VI D P + Y+HR+GR+ RFG++G ++ +T ++
Sbjct: 327 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD 386
Query: 400 EEGFLKRLKTKNI 412
+ K N+
Sbjct: 387 QRMLFDIQKFYNV 399
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 153 bits (386), Expect = 1e-36
Identities = 122/430 (28%), Positives = 202/430 (46%), Gaps = 48/430 (11%)
Query: 17 ERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSL 76
E ++ D E + E+ + K+ F++L + + ++ L + K T IQ+ +IP L
Sbjct: 24 EEVEEQRNDREQEEEQKEEEAPKS--FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYIL 81
Query: 77 KGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGL--GALIISPTRELAMQIYEVLS 134
+G DV+ AKTGSGKTLA+L+P+++KL+ L A I+ P+REL Q+Y +S
Sbjct: 82 EGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVS 141
Query: 135 KIGK--HTTFSAGLVIGGKDVTFEKERISRI-NILIGTPGRILQHMDQAVGFNTS---NL 188
+ + A + + + ++ + IL+ TP I + V T+ +L
Sbjct: 142 SLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESL 201
Query: 189 QLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGT 248
+LVLDEAD L G++ L ++ + +P Q LL SAT S ++ L +L L + +
Sbjct: 202 SILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLIL--HNPIVL 259
Query: 249 MEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYET 308
+ + A P ++QQ +I DKL + + +K + K I+ ++ + F +
Sbjct: 260 TLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKL 319
Query: 309 FRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTD------------------- 349
F + + GI L+G Q +R L++F+ L +TD
Sbjct: 320 FLE-KFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKE 378
Query: 350 ----------------VVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLI 393
V RGIDF V VI D P+ V YIHR+GR R G S+
Sbjct: 379 NKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVS 438
Query: 394 MLTPEEEEGF 403
+++P+E EGF
Sbjct: 439 LISPDEMEGF 448
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 152 bits (384), Expect = 2e-36
Identities = 108/414 (26%), Positives = 208/414 (50%), Gaps = 27/414 (6%)
Query: 10 QQRKLIRERDSQKIKDLETKVEEYNPKIAKANL-------FQDLPISEQTLKGLKEAAFI 62
+++ L E + ++I+D + +V + + K F+D + + L+ + + F
Sbjct: 3 EEQLLDYEEEQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFE 62
Query: 63 KLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDG-LGALIISP 121
+E+Q E IP ++ G DV+ AK+G GKT F+I +++L +DG + + +
Sbjct: 63 HPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQL-----EPVDGEVSVVCMCH 117
Query: 122 TRELAMQIYEVLSKIGKHTT-FSAGLVIGGKDVTFEKERISRI--NILIGTPGRILQHMD 178
TRELA QI + + K+ + GG + ++ER++ +I++GTPGR+L +
Sbjct: 118 TRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLA-LA 176
Query: 179 QAVGFNTSNLQLLVLDEADRCL-DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLAR 237
++ ++ VLDE D+ + D +R + I+ P +Q ++FSAT + L + +
Sbjct: 177 RSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCK 236
Query: 238 LSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLS 297
+ D MEV + + T LQQ Y+++ +K L + + + +++++F+
Sbjct: 237 RFMQD-----PMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVK 291
Query: 298 SSKQVHFVYETFRKLQ-PGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGID 356
+ K+ +++ + P I++ H + Q R F Q L +TD+ RG+D
Sbjct: 292 AVKRCEALHQLLTEQNFPSIAI---HRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMD 348
Query: 357 FPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK 410
V+ V D PED D+Y+HRV RA RFG +G ++ ++ E + L ++ +
Sbjct: 349 IERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDR 402
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 152 bits (384), Expect = 2e-36
Identities = 103/372 (27%), Positives = 188/372 (49%), Gaps = 15/372 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D + + L+ + + F +E+Q E IP ++ G D+L AK+G GKT F++ +++
Sbjct: 43 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHT-TFSAGLVIGGKDVTFEKERIS 161
L + +D + L++ TRELA QI + + K+ T + GG + ++E +
Sbjct: 103 L---EPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLK 159
Query: 162 R--INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPAS 218
+I++GTPGRIL + + N L+ VLDE D+ L+ + +R + I + P
Sbjct: 160 SGTPHIVVGTPGRILA-LIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHG 218
Query: 219 RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278
+Q ++FSAT S+ + + + + D MEV + + T LQQ Y+ + +K
Sbjct: 219 KQVMMFSATLSKDIRPVCKKFMQD-----PMEVYVDDEAKLTLHGLQQHYVNLKENEKNK 273
Query: 279 ILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338
LF + +++++F+ S ++ + + + + +H Q R +F
Sbjct: 274 KLFELLDVLEFNQVVIFVKSVQRCVALSQLLT--EQNFPAIGIHRGMTQEERLNRYQQFK 331
Query: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398
Q L +T++ RG+D V+ V D PED DTY+HRV RA RFG +G ++ ++ E
Sbjct: 332 DFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 391
Query: 399 EEEGFLKRLKTK 410
+ L ++ +
Sbjct: 392 NDAKILNEVQDR 403
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 152 bits (383), Expect = 2e-36
Identities = 103/373 (27%), Positives = 191/373 (50%), Gaps = 18/373 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D + + L+ + + F +E+Q E IP ++ G DVL AK+G GKT F++ +++
Sbjct: 46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 103 LYREKWTDMDG-LGALIISPTRELAMQIYEVLSKIGKHT-TFSAGLVIGGKDVTFEKERI 160
+ ++G + L++ TRELA QI + + K+ + + GG + ++E +
Sbjct: 106 I-----EPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL 160
Query: 161 SRI--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPA 217
+ ++++GTPGRIL + F+ N++ VLDE D+ L+ + +R + I P
Sbjct: 161 KKNCPHVVVGTPGRILALVRNR-SFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 219
Query: 218 SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL 277
+Q ++FSAT S+ + + R + D MEV + + T LQQ Y+++ +K
Sbjct: 220 EKQCMMFSATLSKDIRPVCRKFMQD-----PMEVFVDDETKLTLHGLQQYYVKLKDSEKN 274
Query: 278 DILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKF 337
LF + +++I+F+ S ++ + + ++ + +H Q R +F
Sbjct: 275 RKLFDLLDVLEFNQVIIFVKSVQRCMALAQLL--VEQNFPAIAIHRGMAQEERLSRYQQF 332
Query: 338 SRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTP 397
Q L +T++ RG+D V+ V D PED DTY+HRV RA RFG +G ++ ++
Sbjct: 333 KDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 392
Query: 398 EEEEGFLKRLKTK 410
E + L ++ +
Sbjct: 393 ENDAKILNDVQDR 405
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 151 bits (382), Expect = 3e-36
Identities = 112/375 (29%), Positives = 192/375 (50%), Gaps = 33/375 (8%)
Query: 56 LKEAAFIKLTEIQRESIP--LSLKGH-DVLGAAKTGSGKTLAFLIPVIEKLYRE-----K 107
++E F T IQR +IP ++K + D LG A TGSGKTLAF+IP++ K+ R
Sbjct: 189 IQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPS 248
Query: 108 WTDMDGLGALIISPTRELAMQIYEVLSKI----GKHTTFSAGLV--IGGKDVTFEKERIS 161
+DG ALI++PTREL QI + K+ K + + ++ +GG + +S
Sbjct: 249 LKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLS 308
Query: 162 R-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP---- 216
+IL+ TPGR++ ++ + ++ LVLDEAD+ +D+GF+ + I+ +
Sbjct: 309 EGCDILVATPGRLIDSLENHL-LVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINAD 367
Query: 217 --ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPL- 273
+RQTL+F+AT + ++ +A Y Q + + S E L Q +E
Sbjct: 368 SAVNRQTLMFTATMTPVIEKIA----AGYMQKPVYATIGVETGS---EPLIQQVVEYADN 420
Query: 274 -PDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTE 332
DK L + + +I+F++ + ++ E F+K + + + LHG + Q R
Sbjct: 421 DEDKFKKLKPIVAKY-DPPIIIFINYKQTADWLAEKFQK-ETNMKVTILHGSKSQEQREH 478
Query: 333 TLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSL 392
+L F + + +T+V ARG+D P+V V+ + +D YIHR+GR R EG ++
Sbjct: 479 SLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAV 538
Query: 393 IMLTPEEEEGFLKRL 407
++ E+E ++ L
Sbjct: 539 SFVSAAEDESLIREL 553
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 150 bits (379), Expect = 7e-36
Identities = 116/375 (30%), Positives = 187/375 (48%), Gaps = 32/375 (8%)
Query: 43 FQDL----PISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIP 98
F+DL ++ L L E F + T IQ E IP++L DVL TGSGKTLAFLIP
Sbjct: 120 FEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIP 179
Query: 99 VIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIG------KHTTFSAGLVIGGKD 152
+++++ +K T GL LIISPT+ELA QI+ K+ K L+
Sbjct: 180 LVQQIIDDKQTA--GLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLG 237
Query: 153 VTFEKERIS--RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDA 210
+ + +S + +I+I TP R++ + + S ++ L+ DEAD+ D F D
Sbjct: 238 AKLKNKVVSDKKYDIIISTPLRLIDVVKNEA-LDLSKVKHLIFDEADKLFDKTFVEQSDD 296
Query: 211 IINNL--PASRQTLLFSATQSQSLDDLARLSLTDYKQV--GTMEVLNANSSSATPESLQQ 266
I++ P+ R+ + FSAT +++++A+ + D +V G E N N ++Q
Sbjct: 297 ILSACREPSLRKAM-FSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTN--------IEQ 347
Query: 267 SYIEVPLPD-KLDILFSFIKS-HLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGR 324
I + KL + ++ K +I+FL S + +Y + I++ +H
Sbjct: 348 KLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYHEL--MYDRINVDVIHAE 405
Query: 325 QKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAAR 384
+ R +++F + CL TDV+ARGIDF V+ VI D P Y+HR+GR R
Sbjct: 406 RTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGR 465
Query: 385 FGKEGKSLIMLTPEE 399
G+ GK++ T ++
Sbjct: 466 GGRSGKAITFYTKQD 480
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 150 bits (378), Expect = 9e-36
Identities = 101/372 (27%), Positives = 188/372 (50%), Gaps = 16/372 (4%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D + + L+ + + F +E+Q E IP ++ G DVL AK+G GKT F++ +++
Sbjct: 47 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHT-TFSAGLVIGGKDVTFEKERIS 161
L E T + L++ TRELA QI + + K+ + GG + ++E +
Sbjct: 107 L--EPVTGQ--VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 162
Query: 162 RI--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPAS 218
+ +I++GTPGRIL + + N +++ +LDE D+ L+ + +R + I P
Sbjct: 163 KNCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 221
Query: 219 RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278
+Q ++FSAT S+ + + R + D ME+ + + T LQQ Y+++ +K
Sbjct: 222 KQVMMFSATLSKEIRPVCRKFMQD-----PMEIFVDDETKLTLHGLQQYYVKLKDNEKNR 276
Query: 279 ILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338
LF + +++++F+ S ++ + + ++ + +H Q R +F
Sbjct: 277 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLL--VEQNFPAIAIHRGMPQEERLSRYQQFK 334
Query: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398
Q L +T++ RG+D V+ D PED DTY+HRV RA RFG +G ++ ++ E
Sbjct: 335 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 394
Query: 399 EEEGFLKRLKTK 410
+ L ++ +
Sbjct: 395 NDAKILNDVQDR 406
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 150 bits (378), Expect = 9e-36
Identities = 114/381 (29%), Positives = 189/381 (48%), Gaps = 30/381 (7%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D +S L L E + + + IQ +SIP + +VL +A TGSGKTLAF +PVI++
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 103 LYREKW------TDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFE 156
+ K ++ L A+++ PTRELA Q Y K +T+ SA G E
Sbjct: 188 ILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSG------E 241
Query: 157 KERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCL------DMGFKRTLDA 210
+ I +IL+ TP RI+ H+D+ +TS+L+ LV+DE+DR D F+ L A
Sbjct: 242 ETDIQHADILVSTPNRIVFHLDK---IDTSSLRWLVVDESDRLFEVVEGQDKCFRNQLAA 298
Query: 211 IINNLPAS-RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYI 269
I A + FSAT S ++ + ++ + +G + V NSS+ S++Q
Sbjct: 299 IYKACDAKCTRVAFFSATFSHEVEKWCKENIDE---IGMVCVGERNSSNT---SVKQKLT 352
Query: 270 EVPLPDKLDILF-SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQT 328
D I + +++ K +VF+ S + + + + + + ++ +
Sbjct: 353 YCGTEDGKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDK 412
Query: 329 ARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKE 388
R ET+++F R + L T+++ RG+D V VI D P + +YIHRVGR R GK
Sbjct: 413 ERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKS 472
Query: 389 GKSLIMLTPEEEEGFLKRLKT 409
G ++ T + + ++K + T
Sbjct: 473 GHAVTYFT-DADMKYIKSIAT 492
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 149 bits (376), Expect = 2e-35
Identities = 117/387 (30%), Positives = 192/387 (49%), Gaps = 22/387 (5%)
Query: 31 EEYNPKIAK-ANLFQDLPISEQTLKG-LKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTG 88
EE KI N F+ S ++ G +++ F K + IQ + PL L G D +G ++TG
Sbjct: 72 EESTVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTG 131
Query: 89 SGKTLAFLIPVI----EKLYREKWTDMDGLGA---LIISPTRELAMQIYEVLSKIGKHTT 141
SGKTLAFL+P + +L + + D + + L++SPTRELA QI + K +
Sbjct: 132 SGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGY 191
Query: 142 FSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD 201
S L GG + + I+I TPGR+ + V + +++ +VLDEADR LD
Sbjct: 192 KSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGV-ISLASVTYVVLDEADRMLD 250
Query: 202 MGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATP 261
MGF+ + I+ + R L SAT + + LTD + +N + +
Sbjct: 251 MGFEVAIRRILFEIRPDRLVALTSATWPEGVR-----KLTDKYTKEAVMAVNGSLDLTSC 305
Query: 262 ESLQQSYIEVPLPDKL----DILFSFIKSHLKS-KLIVFLSSSKQVHFVYETFRKLQPGI 316
+S+ Q + VP + +I+ +H ++ K+I+F+ S + F GI
Sbjct: 306 KSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDF--CMKGI 363
Query: 317 SLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYI 376
+ LHG + Q+ R +L+ + L +TD+ +RGID P + V+ D P D++ Y+
Sbjct: 364 NSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYV 423
Query: 377 HRVGRAARFGKEGKSLIMLTPEEEEGF 403
HRVGR R G++G+++ L + F
Sbjct: 424 HRVGRTGRAGRKGEAMSFLWWNDRSNF 450
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 149 bits (376), Expect = 2e-35
Identities = 116/398 (29%), Positives = 192/398 (48%), Gaps = 19/398 (4%)
Query: 17 ERDSQKIKDLETKVEEYN---PKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIP 73
ERD+ K V N P + A L L+ L E F + T IQR++IP
Sbjct: 114 ERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIP 173
Query: 74 LSLKGHDVLGAAKTGSGKTLAFLIPVIEKL-YREKWTDMDGLGALIISPTRELAMQIYEV 132
+ L G + A TGSGKT AF+ P++ KL DG+ A+I+SP RELA Q
Sbjct: 174 ILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIRAVILSPARELAAQTARE 233
Query: 133 LSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLV 192
K+ K + F L+ T + ++ ++LI TP R L+ +A + S ++ LV
Sbjct: 234 GKKLIKGSNFHIRLMTKPLVKTADFSKLW-CDVLISTPMR-LKRAIKAKKIDLSKVEYLV 291
Query: 193 LDEADRCLDMGFKRTLDAIINNLP-ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEV 251
LDE+D+ + + +D ++ S LFSAT S+++LAR + D + V
Sbjct: 292 LDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHD-----AVRV 346
Query: 252 LNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFR- 310
+ ++A+ Q+ KL L L +++F+ S ++ +Y+ +
Sbjct: 347 IIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKC 406
Query: 311 -KLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP 369
++ G+ +H R +D+F + L +TDV+ARG+DF ++ VI D P
Sbjct: 407 ENIRAGV----IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFP 462
Query: 370 EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRL 407
+ YIHR+GR+ R G+ G+++ T E++ FL+ +
Sbjct: 463 DSASAYIHRIGRSGRAGRSGEAITFYT-EQDVPFLRNI 499
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 148 bits (374), Expect = 3e-35
Identities = 123/413 (29%), Positives = 190/413 (45%), Gaps = 34/413 (8%)
Query: 3 KKQKHNTQQRKLIRERDS--------QKIKDLETKVEEYNPKIAKANLFQDLPISEQTLK 54
KK K ++RK E D +K + K+ + ++ N IS +
Sbjct: 50 KKSKKKDKKRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLRE 109
Query: 55 GLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGL 114
LK L IQ + + L G D++G A+TG GKTLAF++P++E L +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 115 G------ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILI 167
G L++ PTRELA Q+ G S+ + GG ++ ++ R ++I++
Sbjct: 170 GYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVV 229
Query: 168 GTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR--QTLLFS 225
GTPGRI H+++ + S LQ VLDEAD L MGF ++ I+ + S QTLLFS
Sbjct: 230 GTPGRIKDHIERQ-NLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFS 288
Query: 226 ATQSQSLDDLA-RLSLTDYKQ---VGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
AT + +++ R D K VG ++ +NS ++ + +PD +
Sbjct: 289 ATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYS 348
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
S + I+F + QV L G LHG Q+ R TL F +
Sbjct: 349 S------GGQTIIFAETKVQV----SELSGLLDGSRA--LHGEIPQSQREVTLAGFRNGK 396
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM 394
L +T+V ARG+D V +IQ + P +V+ YIHR GR R G G ++ +
Sbjct: 397 FATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 148 bits (374), Expect = 3e-35
Identities = 112/385 (29%), Positives = 187/385 (48%), Gaps = 51/385 (13%)
Query: 24 KDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLG 83
K+LE KV + + ++ + L LK+ + K IQ +++P+ + G D +G
Sbjct: 380 KELELKVHGKDVP-RPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIG 438
Query: 84 AAKTGSGKTLAFLIPVIEKLYREKWTDM-DGLGALIISPTRELAMQIYEVLSKIGKHTTF 142
AKTGSGKTL F++P++ + + + DG L+++PTREL QIY + K K
Sbjct: 439 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGI 498
Query: 143 SAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVG--FNTSNLQLLVLDEADRC 199
V GG V + + R I++ TPGR++ + + G N + LV+DEADR
Sbjct: 499 ICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRM 558
Query: 200 LDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLAR--LSLTDYKQVGTMEVLNANSS 257
DMGF+ + I+ N+ RQT+LFSAT + ++ LAR L+ QVG V+N + +
Sbjct: 559 FDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDIT 618
Query: 258 SAT---PESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQP 314
PES + S + L++L + + K K++VF+ S +
Sbjct: 619 QLVEIRPESERFSRL-------LELLGEWYE---KGKVLVFVRSQE-------------- 654
Query: 315 GISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDT 374
+++ F L +T V ARG+D ++ V+ D P +
Sbjct: 655 -----------------KSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYED 697
Query: 375 YIHRVGRAARFGKEGKSLIMLTPEE 399
Y+HRVGR R G++G ++ ++ ++
Sbjct: 698 YVHRVGRTGRAGRKGCAVTFISEDD 722
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 147 bits (372), Expect = 5e-35
Identities = 108/343 (31%), Positives = 178/343 (51%), Gaps = 22/343 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+ + E LK++ + T IQ + IP+ L G D+L +A TGSGKT AFL+PVI +
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
Query: 103 LYREKWTDMDGLGALIISPTRELAMQI----YEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158
E T ALI++PTRELA+QI E++S + + T L++GG + +
Sbjct: 265 ALFESKTP----SALILTPTRELAIQIERQAKELMSGLPRMKTV---LLVGGLPLPPQLY 317
Query: 159 RISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPA 217
R+ + + ++I TPGR+L + Q+ ++++V+DEAD L MGF++ + I+ N+P
Sbjct: 318 RLQQHVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPN 376
Query: 218 SRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKL 277
QT+L SAT S++ LA L + ++ T E + +++Q + V P K
Sbjct: 377 DCQTILVSATIPTSIEQLASQLLHNPVRIITGE------KNLPCANVRQIILWVEDPAKK 430
Query: 278 DILFSFI--KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLD 335
LF + K K ++VF+ + E +K+ G+ + +H + Q R L
Sbjct: 431 KKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKI-TGLKSISIHSEKSQIERKNILK 489
Query: 336 KFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHR 378
+ + ST V+ RG+D SV V+ D P +D Y+H+
Sbjct: 490 GLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 147 bits (371), Expect = 6e-35
Identities = 103/412 (25%), Positives = 201/412 (48%), Gaps = 26/412 (6%)
Query: 10 QQRKLIRERDSQKIKDLETKVEEYNPKIAKANL----FQDLPISEQTLKGLKEAAFIKLT 65
++ L E + +K+ D KV K + F+D + + L+ + ++ F +
Sbjct: 11 EEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPS 70
Query: 66 EIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTREL 125
E+Q E IP ++ G DV+ AK+G GKT F++ ++++ + AL++ TREL
Sbjct: 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQ----VSALVLCHTREL 126
Query: 126 AMQIYEVLSKIGKHTTF----SAGLVIGGKDVTFEKERISRI--NILIGTPGRILQHMDQ 179
A Y++ ++ + +T+ + GG ++ K+ + +I++GTPGR+L + +
Sbjct: 127 A---YQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA-LAR 182
Query: 180 AVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARL 238
+ N++ +LDE D+ L+ + +R + I P +Q ++FSAT S+ + + +
Sbjct: 183 EKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242
Query: 239 SLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSS 298
+ D ME+ + + T L Q YI++ +K L + + +++++F+ S
Sbjct: 243 FMQD-----PMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKS 297
Query: 299 SKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFP 358
+ + + ++ + +H Q R F L +TD+V RGID
Sbjct: 298 VSRAAELNKLL--VECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIE 355
Query: 359 SVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK 410
V+ VI D P+ DTY+HRVGRA RFG +G ++ + + L +++ +
Sbjct: 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQER 407
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 146 bits (369), Expect = 1e-34
Identities = 112/378 (29%), Positives = 193/378 (50%), Gaps = 33/378 (8%)
Query: 36 KIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAF 95
K+ A F D+ +S++ LK + F K + IQ+ +IP L+GH+V+ +K+G+GKT+A+
Sbjct: 46 KLLVAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAY 105
Query: 96 LIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTF 155
V+ + T + ++++PTREL+ Q+ EV+S + AG +G K +
Sbjct: 106 TCGVLGNTKIGERTQV-----MVVTPTRELSTQVTEVISGL-------AG-PLGIKVFSA 152
Query: 156 EKERISRI---NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAII 212
K +I+ +++G+PG IL+ M+ N ++++VLDEAD LD T I
Sbjct: 153 LKNKITDSIGEEVVVGSPGTILKLMELG-KLNYKGVKMIVLDEADILLDKDMMGTQTFRI 211
Query: 213 NNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP 272
L + Q + FSAT S+ + D V + P+ ++ YIE
Sbjct: 212 LKLISGAQMIFFSATFSEQVKQTIEFYAPD-------AVKMYEERNGKPDEIKLFYIEAE 264
Query: 273 LPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGI-SLMHLHGRQKQTART 331
+K L S + S++I+F+S+ V+++ +KL+ + S+ LHG + R
Sbjct: 265 GENKRRALKSLYEYLSISQMIIFVSTKATVNYLR---KKLEDDLHSVSCLHGDLEIEERE 321
Query: 332 ETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP-----EDVDTYIHRVGRAARFG 386
+ + F ++ L +TDV +RG+D P V+ ++ D P TYIHR+GR+ RFG
Sbjct: 322 KAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFG 381
Query: 387 KEGKSLIMLTPEEEEGFL 404
+ G + + EE E +L
Sbjct: 382 RTGFVVDFVRDEELEAYL 399
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 146 bits (369), Expect = 1e-34
Identities = 103/412 (25%), Positives = 201/412 (48%), Gaps = 26/412 (6%)
Query: 10 QQRKLIRERDSQKIKDLETKVEEYNPKIAKANL----FQDLPISEQTLKGLKEAAFIKLT 65
++ L E + +K+ D KV K + F+D + + L+ + ++ F +
Sbjct: 11 EEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPS 70
Query: 66 EIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTREL 125
E+Q E IP ++ G DV+ AK+G GKT F++ ++++ + AL++ TREL
Sbjct: 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQ----VSALVLCHTREL 126
Query: 126 AMQIYEVLSKIGKHTTF----SAGLVIGGKDVTFEKERISRI--NILIGTPGRILQHMDQ 179
A Y++ ++ + +T+ + GG ++ K+ + +I++GTPGR+L + +
Sbjct: 127 A---YQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA-LAR 182
Query: 180 AVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARL 238
+ N++ +LDE D+ L+ + +R + I P +Q ++FSAT S+ + + +
Sbjct: 183 EKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242
Query: 239 SLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSS 298
+ D ME+ + + T L Q YI++ +K L + + +++++F+ S
Sbjct: 243 FMQD-----PMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKS 297
Query: 299 SKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFP 358
+ + + ++ + +H Q R F L +TD+V RGID
Sbjct: 298 VSRAAELNKLL--VECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIE 355
Query: 359 SVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK 410
V+ VI D P+ DTY+HRVGRA RFG +G ++ + + L +++ +
Sbjct: 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQER 407
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 145 bits (366), Expect = 2e-34
Identities = 108/388 (27%), Positives = 189/388 (47%), Gaps = 36/388 (9%)
Query: 43 FQDLPISEQTLKGLKEAA-FIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIE 101
+ L +S T+ + E F LT IQ +++P + G DV+G +KTGSGKT+++L+P++
Sbjct: 257 WSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLR 316
Query: 102 KLYREKWTDMDGLG--ALIISPTRELAMQIYEVLSKIGK-HTTFSAGLVIGGKDVTFEKE 158
++ ++ G LI++PTRELA+QI+E ++K + T+ + GG ++ +
Sbjct: 317 QVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQIT 376
Query: 159 RISR-INILIGTPGRILQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNL 215
+ R I++ TPGR + + G +T + +V+DEADR D+GF+ + I+ +
Sbjct: 377 DLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV 436
Query: 216 PASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD 275
+Q +LFSAT L A + + + + NS E+++Q + D
Sbjct: 437 RPDKQCVLFSATFPNKLRSFA------VRVLHSPISITINSKGMVNENVKQKFRICHSED 490
Query: 276 -KLDILFSFIKSH--------------------LKSKLIVFLSSSKQVHFVYETFRKLQP 314
K D L I + +K I+F+SS F+ + + L
Sbjct: 491 EKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISK--KLLNA 548
Query: 315 GISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDT 374
GI +H + R L+KF R ++ L T+V++RG++ P V VI + +
Sbjct: 549 GIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQ 608
Query: 375 YIHRVGRAARFGKEGKSLIMLTPEEEEG 402
Y+H GR AR + G ++ +L +E G
Sbjct: 609 YVHTTGRTARGSRSGTAITLLLHDELSG 636
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 144 bits (364), Expect = 4e-34
Identities = 105/417 (25%), Positives = 205/417 (48%), Gaps = 31/417 (7%)
Query: 10 QQRKLIRERDSQKIKDLETKVEEYNPKIAKANL-------FQDLPISEQTLKGLKEAAFI 62
++ +L++++ +Q+I E K + F+D + + L+ + ++ F
Sbjct: 13 EEEELVQDQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFE 72
Query: 63 KLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDG-LGALIISP 121
+E+Q+ IP S+ G DVL AK+G GKT F++ ++++ +DG + L++
Sbjct: 73 HPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI-----EPVDGEVSVLVLCH 127
Query: 122 TRELAMQIYEVLSKIGKH------TTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQ 175
TRELA QI ++ K+ F G+ I +D+ K++ +I++ TPGR+
Sbjct: 128 TRELAFQIKNEYARFSKYLPDVRTAVFYGGINIK-QDMEAFKDKSKSPHIVVATPGRLNA 186
Query: 176 HMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPASRQTLLFSATQSQSLDD 234
+ + + ++++ VLDE D+ L+ + +R + + P +Q ++FSAT S +
Sbjct: 187 LVREKI-LKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRP 245
Query: 235 LARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIV 294
+ + + + +E+ + + T LQQ Y+++ K + + S +++++
Sbjct: 246 ICKKFMQN-----PLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVI 300
Query: 295 FLSSSKQVHFVYETFRKLQ-PGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVAR 353
F+ S + + + R+ P I + HG Q R + F +TDV R
Sbjct: 301 FVKSVSRANELDRLLRECNFPSICI---HGGLPQEERIKRYKAFKDFDKRICVATDVFGR 357
Query: 354 GIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTK 410
GID V+ VI D P+ D+Y+HRVGRA RFG +G ++ + EE+ L +++ +
Sbjct: 358 GIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQER 414
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 144 bits (363), Expect = 5e-34
Identities = 111/396 (28%), Positives = 186/396 (46%), Gaps = 48/396 (12%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+ + + + L+ + + + + T IQ ++IPL+L+G D+L A+TGSGKT A+ IP+++
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 103 LYREKWTDM---DGLGALIISPTRELAMQIYEVLSKIGKHTTFS---AGLVIGGKDVTFE 156
L K T + L++ PT+ELA Q ++ ++ + A + V+
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128
Query: 157 KERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP 216
+ + ++++GTP RIL H+ Q +L+LLV+DEAD GF+ L +++ +LP
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188
Query: 217 ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPL-PD 275
Q L SAT ++ + L L L + + E S P+ LQQ + D
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQE-----SQLPGPDQLQQFQVVCETEED 243
Query: 276 KLDILFSFIK-SHLKSKLIVF---LSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
K +L++ +K S ++ K ++F L S ++ E F I L+G +R
Sbjct: 244 KFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQF-----SIPTCVLNGELPLRSRC 298
Query: 332 ETLDKFSRAQHVCLFSTDV---------------------------VARGIDFPSVDWVI 364
+ +F++ + C+ +TD VARGIDF V V+
Sbjct: 299 HIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVL 358
Query: 365 QVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEE 400
D P + YIHR GR AR G L + P E+
Sbjct: 359 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQ 394
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 144 bits (363), Expect = 5e-34
Identities = 105/347 (30%), Positives = 176/347 (50%), Gaps = 15/347 (4%)
Query: 19 DSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKG 78
+ +K D+ T E + +++ F + + E L+G+ F K + IQ+ +IP LK
Sbjct: 4 NKKKNDDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKA 63
Query: 79 HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGK 138
DV+ A++G+GKT F I V++ L T + ALI+SPTRELA+QI +V+ +G
Sbjct: 64 RDVIAQAQSGTGKTATFSISVLQSLD----TQVRETQALILSPTRELAVQIQKVVLALGD 119
Query: 139 HTTFSAGLVIGGKDVTFEKERIS-RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEAD 197
+ IGG ++ + ++ +++ GTPGR+ M + T ++LLVLDEAD
Sbjct: 120 YMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFD-MIRRRNLRTRAIKLLVLDEAD 178
Query: 198 RCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSS 257
L+ GFK L I LP Q +L SAT + ++ +TD + +L
Sbjct: 179 EMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTD-----PIRIL-VKRD 232
Query: 258 SATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGI 316
T E ++Q ++ V + K D L + ++ ++F ++ ++V ++ + ++ +
Sbjct: 233 ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTV 292
Query: 317 SLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWV 363
S M HG +Q R E + +F L STDV ARG+D P V V
Sbjct: 293 SSM--HGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLV 337
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 143 bits (361), Expect = 9e-34
Identities = 111/366 (30%), Positives = 183/366 (49%), Gaps = 19/366 (5%)
Query: 42 LFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIE 101
L +D + + + L F T IQ +++P+ L+ ++ A TGSGKTLAFL P+I
Sbjct: 120 LTRDFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIIN 179
Query: 102 KLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLV--IGGKDVTFEKER 159
L K T GL AL+++PTRELA QIY +++ + T + + E
Sbjct: 180 GLRAHKTT---GLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAEC 236
Query: 160 ISRINILIGTPGRILQHMDQAVGF-NTSNLQLLVLDEADRCLDMG---FKRTLDAIINNL 215
R +IL+ TP R+ + Q + S+++ VLDEADR ++ G FK LD I
Sbjct: 237 KQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAAC 296
Query: 216 P-ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP 274
++ FSAT + + A+ +L K + + + NS++ E++QQ + V
Sbjct: 297 SNPTKCVAFFSATYTVPV---AKWALRHLKNLVRITIGVQNSAT---ETVQQELLFVGSE 350
Query: 275 D-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTET 333
KL + ++ L+ ++VF+ S ++ ++E L GI++ +H + Q R
Sbjct: 351 GGKLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEEL--LYDGINVDVIHAERSQHQRDNC 408
Query: 334 LDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLI 393
+ F L T+++ RGIDF V+ VI D P +YIHR+GR R G+ G+++
Sbjct: 409 VKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAIT 468
Query: 394 MLTPEE 399
T E+
Sbjct: 469 FFTQED 474
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 142 bits (358), Expect = 2e-33
Identities = 104/377 (27%), Positives = 187/377 (49%), Gaps = 24/377 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D + + + + + F +E+Q+ +IP S+ G DVL AK+G GKT F++ +++
Sbjct: 64 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 123
Query: 103 LYREKWTDMDG-LGALIISPTRELAMQIYEVLSKIGKH------TTFSAGLVIGGKDVTF 155
L + G + ++I RELA QI + K+ F G I KD
Sbjct: 124 L-----DPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPIS-KDAEL 177
Query: 156 EKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINN 214
K + + +I++ TPGR L+ + + + S+++ V+DE D+ L+ + +R + I
Sbjct: 178 LKNKDTAPHIVVATPGR-LKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRA 236
Query: 215 LPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLP 274
P +Q ++FSAT SQ + + R L + +E+ + + T LQQ YI++
Sbjct: 237 TPRDKQVMMFSATLSQEIRPICRRFLQN-----PLEIFVDDEAKLTLHGLQQYYIKLEER 291
Query: 275 DKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQ-PGISLMHLHGRQKQTARTET 333
+K L + +++I+F+ S+ + + + + P I++ HG KQ R
Sbjct: 292 EKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITV---HGHMKQEERIAR 348
Query: 334 LDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLI 393
F + STDV RGID ++ I D + D Y+HRVGRA RFG +G ++
Sbjct: 349 YKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAIS 408
Query: 394 MLTPEEEEGFLKRLKTK 410
++ +E+E L +++ +
Sbjct: 409 FVSSKEDEEVLAKIQER 425
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 141 bits (356), Expect = 3e-33
Identities = 123/408 (30%), Positives = 206/408 (50%), Gaps = 47/408 (11%)
Query: 6 KHNTQQRKLIRERDSQKIK-DLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKL 64
+H + K ++R S + + E+ + + + K+ + FQ+L +SE+ + L+E
Sbjct: 78 RHLKESAKPPQQRPSSVVGVEEESSIRKKSKKLVEN--FQELGLSEEVMGALQELNIEVP 135
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG--------- 115
TEIQ IP ++ V+ + TGSGKTLA+L+P+++ L D LG
Sbjct: 136 TEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRPR 195
Query: 116 ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRIL 174
+++ PTREL+ Q+ L + H F + LV GG + +++ ++ I++++GTPGRIL
Sbjct: 196 TVVLCPTRELSEQV--CLHQDYHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRIL 253
Query: 175 QHMDQAVGFNTSNLQLLVLDEADRCLDMGF----KRTLDAIINNLPASRQTLLFSATQSQ 230
QH+++ ++ LVLDEAD D GF ++ L + ++ + + F A Q
Sbjct: 254 QHIEEG-NMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQHIKVVNEIVSFQAVQ-- 310
Query: 231 SLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP-LPDKLDILFSFIKSHLK 289
L D + G +E L ++ + + +I++ DKL+ L ++ L
Sbjct: 311 --------KLVDEEFQG-IEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLA 361
Query: 290 --SKLIVF---LSSSKQV-HFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHV 343
SK++VF L+SS+ V H++ E IS ++ HG R E L KF +
Sbjct: 362 KGSKVMVFCNTLNSSRAVDHYLSEN------QISTVNYHGEVPAEQRVENLKKFKDEEGD 415
Query: 344 C--LFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
C L TD+ ARG+D VD V+ D P++ Y+HR GR AR G +G
Sbjct: 416 CPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKG 462
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 140 bits (353), Expect = 7e-33
Identities = 91/264 (34%), Positives = 145/264 (54%), Gaps = 18/264 (6%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F +L +S ++ ++ K T +Q IP L+G D LG AKTGSGKT AF++P+++K
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
L + + G+ L+++PTRELA QI E +GK +++GG D+ + +SR
Sbjct: 64 LSEDPY----GIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSR 119
Query: 163 -INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG---FKRTLDAIINNLPAS 218
+++I TPGR+ H+ + F+ ++ LV+DEADR L+ G F L+AI+ +PA
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 219 RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDK-- 276
RQTLLFSAT + +L +L L+ A + +T E L Q Y+ VP K
Sbjct: 180 RQTLLFSATLTDTLRELQGLA------TNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDA 233
Query: 277 --LDILFSFIKSHLKSKLIVFLSS 298
+ ++ F H +I+F ++
Sbjct: 234 YLVHLIQRFQDEHEDWSIIIFTNT 257
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 140 bits (352), Expect = 1e-32
Identities = 119/447 (26%), Positives = 209/447 (46%), Gaps = 62/447 (13%)
Query: 1 MAKKQKHNTQQRKLI-RERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEA 59
M +K+KH ++ + R++ + + + ++ P+ F D + E+ LK + E
Sbjct: 51 MGRKRKHRMKKSQAEKRQKLMESLVGPQVDEMDFEPE---HKTFADFGLDERILKSIGEL 107
Query: 60 AFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG--AL 117
+ K ++Q I L+L+ +++G A+TGSGKT AFLIP+++KL E T+ +G A+
Sbjct: 108 GWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAV 167
Query: 118 IISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI---SRINILIGTPGRIL 174
II+PT+EL QIY++ K+ + F + + D+ E+ + R ++++ TPG++L
Sbjct: 168 IIAPTKELITQIYKLFVKLSQALPFLQAINL--CDINEEENSVWLEDRSHVVVTTPGKLL 225
Query: 175 QHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDD 234
+ + T + LV+DEAD L G++ + I + LP + Q L+ SAT +
Sbjct: 226 RMCSLRPEYCTL-VSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQCLMTSATLKDDMTT 284
Query: 235 LARLSLTDYKQVGTMEVLNA---NSSSATPESLQQSYIEVPLPDKLDILFSFIKSHL-KS 290
L +L +T V T+++ NS T L E ++ IL + K L
Sbjct: 285 LKKLFMTG--PVITIKLTEGDLPNSDQLTQYQLTCGSDE----ERFAILVAMFKLKLIVG 338
Query: 291 KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDV 350
+ I+F+++ + + + R G+ L+ +R +++F+ + + ++DV
Sbjct: 339 RSILFVNTIDRCYKLMLILRVF--GLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDV 396
Query: 351 --------------------------------------VARGIDFPSVDWVIQVDCPEDV 372
V+RGIDF V V+ D PE
Sbjct: 397 SDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETT 456
Query: 373 DTYIHRVGRAARFGKEGKSLIMLTPEE 399
D YIHRVGR AR +G +L P E
Sbjct: 457 DAYIHRVGRTARGFNKGTALSFCIPSE 483
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 138 bits (348), Expect = 3e-32
Identities = 98/321 (30%), Positives = 163/321 (50%), Gaps = 17/321 (5%)
Query: 80 DVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH 139
D+L AK+G+GKTL F + +E L + +I++PTRE+++QI E + K+
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRS----SHIQKVIVTPTREISVQIKETVRKVAP- 105
Query: 140 TTFSAGLVIGGK--DVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEAD 197
T + +GG + + +R I+IGTPGRI Q + + N S++ VLDEAD
Sbjct: 106 TGARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQ-LVKLGAMNMSHVDFFVLDEAD 164
Query: 198 RCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSS 257
+ +D F+ ++ IIN+LP RQ +FSAT ++LD+L L D ++ N+
Sbjct: 165 KLMDEVFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRD------AALVRFNAD 218
Query: 258 SATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGIS 317
++Q Y+ L+ L +KS + +VF + + + G+
Sbjct: 219 DVQLFGIKQ-YVVAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKS--SGLD 275
Query: 318 LMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIH 377
+ + Q R +D+ + L S+D+ ARGID +V+ V+ +D + +TY H
Sbjct: 276 VTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFH 335
Query: 378 RVGRAARFGKEGKSLIMLTPE 398
R+GRAARFG G ++ +L E
Sbjct: 336 RIGRAARFGAHGAAVTLLEDE 356
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 137 bits (344), Expect = 8e-32
Identities = 113/449 (25%), Positives = 208/449 (46%), Gaps = 56/449 (12%)
Query: 15 IRERDSQKIKDL-ETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIP 73
+R + K+K + E K E + A F++L + + L L+ F T++Q ++P
Sbjct: 83 VRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVP 142
Query: 74 LSLKGHDVLGAAKTGSGKTLAFLIPVIEKL------YREKWTDMDG---LGALIISPTRE 124
+KGHD + + TGSGKTLA+L+P++ ++ R ++ D + A+I++P+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 125 LAMQIYEVLSKI-GKHTTFSAGLVIGGKDVTFEKERISRIN--ILIGTPGRILQHMDQAV 181
L MQI + K+ G ++GG + ++E + + I++GTPGRI + + +
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAE-ISKGG 261
Query: 182 GFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP--------------ASRQTLLFSAT 227
+T + LVLDE D L F+ + I+ ++ A+RQT+L SAT
Sbjct: 262 KLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSAT 321
Query: 228 QSQSLDDLARL-----SLTDYKQVGTMEVLNANSS-------------------SATPES 263
S+ A+ L +V ++ + ++ + P +
Sbjct: 322 VPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPA 381
Query: 264 LQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHG 323
L+ Y K+D L + + +I F++ S+Q+ V ++ G++ +HG
Sbjct: 382 LKHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDV--VYKLEARGMNSAEMHG 439
Query: 324 RQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAA 383
+ R+ L KF + L + ++ ARG+D D V+ ++ P D Y HR GR
Sbjct: 440 DLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTG 499
Query: 384 RFGKEGKSLIMLTPEEEEGFLKRLKTKNI 412
R G++G ++ EE + F+ + K +
Sbjct: 500 RLGRKG--TVVTVCEESQVFIVKKMEKQL 526
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 135 bits (340), Expect = 2e-31
Identities = 118/431 (27%), Positives = 193/431 (44%), Gaps = 74/431 (17%)
Query: 37 IAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKG-HDVLGAAKTGSGKTLAF 95
I + F+ + + L+ +K F T IQ +IPL+L+ D++ A TGSGKTLA+
Sbjct: 13 IDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAY 72
Query: 96 LIPVIEKLYREKWT----DMDGLGALIISPTRELAMQIYEVLSKIGKHTT---FSAGLVI 148
LIPVIE + K T + +G +I+ PTRELA Q+Y VL K+ + + + +
Sbjct: 73 LIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISS 132
Query: 149 GGKDVTFEKERISRINILIGTPGRILQHMDQAV-GFNTSNLQLLVLDEADRCLDMGFKRT 207
D + + I++GTPG++L + + + + L+ LV+DE D L G++
Sbjct: 133 DMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDD 192
Query: 208 LDAIINNLPASR--QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQ 265
L+ I LP + QT L SAT + DD+ L + ++ N + L
Sbjct: 193 LNKIGEYLPLKKNLQTFLMSATLN---DDIQALKQKFCRSPAILK-FNDEEINKNQNKLL 248
Query: 266 QSYIEVPLPDKLDILFSFIKSHL-KSKLIVFLSS---SKQVHFVYETFRKLQPGISLMHL 321
Q Y++V DK + + K +L K K ++F+++ ++ V E F GI L
Sbjct: 249 QYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF-----GIKSCIL 303
Query: 322 HGRQKQTARTETLDKFSRAQHVCLFSTD-------------------------------- 349
+ +R +D+F++ + L +TD
Sbjct: 304 NSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPEN 363
Query: 350 ------------------VVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKS 391
V+RG+DF +V V+ D P +Y+HRVGR AR GK G +
Sbjct: 364 DKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTA 423
Query: 392 LIMLTPEEEEG 402
+ + P +E G
Sbjct: 424 ISFVVPLKEFG 434
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 134 bits (337), Expect = 5e-31
Identities = 107/399 (26%), Positives = 195/399 (48%), Gaps = 28/399 (7%)
Query: 4 KQKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIK 63
KQ N + LI ++ ++K + + + +P + F++L + + LKG+ F K
Sbjct: 79 KQSENDESN-LIPNKNEVRVKLADLQADPNSP-LFSVKSFEELELKPELLKGIYSMKFQK 136
Query: 64 LTEIQRESIPLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISP 121
++IQ +++PL L +++G +++G+GKT AF + ++ ++ + A+ ++P
Sbjct: 137 PSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD----ASVPKPQAICLAP 192
Query: 122 TRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAV 181
+RELA QI +V++++GK+T G KD + +I I+IGTPG ++ M +
Sbjct: 193 SRELARQIMDVVTEMGKYTEVKTAF--GIKDSVPKGAKIDA-QIVIGTPGTVMDLMKRRQ 249
Query: 182 GFNTSNLQLLVLDEADRCLDM-GFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSL 240
+ ++++ VLDEAD LD G I + LP + Q +LFSAT S+ ++ A
Sbjct: 250 -LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFA 308
Query: 241 TDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSS 299
+ ++ + + E ++Q Y++ + K ++L + I+F
Sbjct: 309 PNANEI------RLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKK 362
Query: 300 KQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPS 359
+ R G ++ L G + R +D F L +T+V+ARGID
Sbjct: 363 DTAEEIAR--RMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 420
Query: 360 VDWVIQVDCP------EDVDTYIHRVGRAARFGKEGKSL 392
V+ V+ D P D TY+HR+GR RFG+ G S+
Sbjct: 421 VNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSI 459
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 133 bits (334), Expect = 1e-30
Identities = 113/434 (26%), Positives = 202/434 (46%), Gaps = 45/434 (10%)
Query: 17 ERDSQKIKDLETKVEEYNPK--IAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPL 74
+++ + +KD+ V+ +PK + + F++L + + LK L F T IQ ++PL
Sbjct: 183 QKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPL 242
Query: 75 SLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEV 132
L +++ A++G+GKT AF++ ++ ++ + ++PT ELA QI EV
Sbjct: 243 LLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQ----CICLAPTLELAKQIGEV 298
Query: 133 LSKIGKHT-TFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLL 191
+ K+GK I G ++ + R I+IGTPG ++ + + S ++ L
Sbjct: 299 VEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCL 358
Query: 192 VLDEADRCL-DMGF---KRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVG 247
VLDEAD + GF T+ ++ + S Q++LFSAT + + + A + +
Sbjct: 359 VLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKN----- 413
Query: 248 TMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVY 306
+ V+ A P +++Q Y++ D K + + + ++F + V ++Y
Sbjct: 414 AIVVMLKREEQALP-NIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLY 472
Query: 307 ETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQV 366
E R + + LHG R +T+ F R L +T+V ARGID V VI
Sbjct: 473 ENMRARGHQVDV--LHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINY 530
Query: 367 DCP-----------------EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK---- 405
D P D +TY+HR+GR RFGK G ++ ++ E+ +
Sbjct: 531 DLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLEN 590
Query: 406 --RLKTKNIEPSRL 417
++K ++PS L
Sbjct: 591 HFQMKIARMDPSNL 604
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 133 bits (334), Expect = 1e-30
Identities = 113/434 (26%), Positives = 202/434 (46%), Gaps = 45/434 (10%)
Query: 17 ERDSQKIKDLETKVEEYNPK--IAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPL 74
+++ + +KD+ V+ +PK + + F++L + + LK L F T IQ ++PL
Sbjct: 208 QKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPL 267
Query: 75 SLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEV 132
L +++ A++G+GKT AF++ ++ ++ + ++PT ELA QI EV
Sbjct: 268 LLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQ----CICLAPTLELAKQIGEV 323
Query: 133 LSKIGKHT-TFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLL 191
+ K+GK I G ++ + R I+IGTPG ++ + + S ++ L
Sbjct: 324 VEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCL 383
Query: 192 VLDEADRCL-DMGF---KRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVG 247
VLDEAD + GF T+ ++ + S Q++LFSAT + + + A + +
Sbjct: 384 VLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKN----- 438
Query: 248 TMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVY 306
+ V+ A P +++Q Y++ D K + + + ++F + V ++Y
Sbjct: 439 AIVVMLKREEQALP-NIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLY 497
Query: 307 ETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQV 366
E R + + LHG R +T+ F R L +T+V ARGID V VI
Sbjct: 498 ENMRARGHQVDV--LHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINY 555
Query: 367 DCP-----------------EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK---- 405
D P D +TY+HR+GR RFGK G ++ ++ E+ +
Sbjct: 556 DLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLEN 615
Query: 406 --RLKTKNIEPSRL 417
++K ++PS L
Sbjct: 616 HFQMKIARMDPSNL 629
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 133 bits (334), Expect = 1e-30
Identities = 113/434 (26%), Positives = 202/434 (46%), Gaps = 45/434 (10%)
Query: 17 ERDSQKIKDLETKVEEYNPK--IAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPL 74
+++ + +KD+ V+ +PK + + F++L + + LK L F T IQ ++PL
Sbjct: 592 QKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPL 651
Query: 75 SLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEV 132
L +++ A++G+GKT AF++ ++ ++ + ++PT ELA QI EV
Sbjct: 652 LLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQ----CICLAPTLELAKQIGEV 707
Query: 133 LSKIGKHT-TFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLL 191
+ K+GK I G ++ + R I+IGTPG ++ + + S ++ L
Sbjct: 708 VEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCL 767
Query: 192 VLDEADRCL-DMGF---KRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVG 247
VLDEAD + GF T+ ++ + S Q++LFSAT + + + A + +
Sbjct: 768 VLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKN----- 822
Query: 248 TMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVY 306
+ V+ A P +++Q Y++ D K + + + ++F + V ++Y
Sbjct: 823 AIVVMLKREEQALP-NIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLY 881
Query: 307 ETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQV 366
E R + + LHG R +T+ F R L +T+V ARGID V VI
Sbjct: 882 ENMRARGHQVDV--LHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINY 939
Query: 367 DCP-----------------EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK---- 405
D P D +TY+HR+GR RFGK G ++ ++ E+ +
Sbjct: 940 DLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLEN 999
Query: 406 --RLKTKNIEPSRL 417
++K ++PS L
Sbjct: 1000 HFQMKIARMDPSNL 1013
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 132 bits (332), Expect = 2e-30
Identities = 122/367 (33%), Positives = 178/367 (48%), Gaps = 34/367 (9%)
Query: 53 LKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY------RE 106
L+ LK + + IQ IP L GHDVLG A+T +GKT AF +P+I+K+ R
Sbjct: 393 LETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRN 452
Query: 107 KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI-SRINI 165
K DG ALI++PTRELA QI+E L ++T L G D I + +I
Sbjct: 453 KARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDI 512
Query: 166 LIGTPGRILQHMDQAVGFNTS--NLQLLVLDEADRCLDMGFKRTL--------DAIINNL 215
LIGT GRI MD V + S +L+ LV DEADR L K L DA
Sbjct: 513 LIGTCGRI---MDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFMES 569
Query: 216 PASRQTLLFSATQSQSLDDLARLSLTDYK-QVGTMEVLNANSSSATPESLQQSYIEVP-L 273
A+RQT++ SAT + S+ +A + Q ++++ AN + +L+ + E L
Sbjct: 570 AATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNLE--FFECKGL 627
Query: 274 PDKLDILFSFIKSHLKS---KLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTAR 330
+K L +K ++ K I+F+ Q + G+ LHG + Q R
Sbjct: 628 AEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDAC--AAKLTSGGMLAQTLHGDRSQDMR 685
Query: 331 TETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP-----EDVDTYIHRVGRAARF 385
+ ++ F + L +TD+++RGID +D VI D P + DT+IHR GR R
Sbjct: 686 EKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGRT 745
Query: 386 GKEGKSL 392
G++ L
Sbjct: 746 GRKENGL 752
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 131 bits (329), Expect = 4e-30
Identities = 95/318 (29%), Positives = 158/318 (48%), Gaps = 28/318 (8%)
Query: 117 LIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRI-NILIGTPGRILQ 175
L+++PTRELA+Q+ + + + + T +++GG ++ ++R I++ TPGR+ +
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWE 450
Query: 176 HMDQAVGF--NTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS-----RQTLLFSAT- 227
+ + N L+ LV+DEADR ++ G L ++ L S RQTL+FSAT
Sbjct: 451 LIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATL 510
Query: 228 --------------QSQSLDDLARLSLTDYK--QVGTMEVLNANSSSATPESLQQSYIEV 271
++ +D A+L L K G +V++ + AT E+L ++ I
Sbjct: 511 TLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHC 570
Query: 272 PLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTART 331
+K L+ F+ + + +VF +S + + + L I + LH Q R
Sbjct: 571 ETDEKDFYLYYFLMQY-PGRSLVFANSISCIKRLSGLLKVLD--IMPLTLHACMHQKQRL 627
Query: 332 ETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKS 391
L++F+R + L +TDV ARG+D P V VI P + Y+HR GR AR EG S
Sbjct: 628 RNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLS 687
Query: 392 LIMLTPEEEEGFLKRLKT 409
L+++ PE+ F K KT
Sbjct: 688 LMLIGPEDVINFKKIYKT 705
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 131 bits (329), Expect = 4e-30
Identities = 110/408 (26%), Positives = 191/408 (45%), Gaps = 27/408 (6%)
Query: 13 KLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESI 72
KLIR +E + N + F++L + Q L+G+ F + ++IQ ++
Sbjct: 64 KLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENAL 123
Query: 73 PLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKLY-REKWTDMDGLGALIISPTRELAMQI 129
PL L +++ +++G+GKT AF++ ++ ++ K+ L +SPT ELA+Q
Sbjct: 124 PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ-----CLCLSPTYELALQT 178
Query: 130 YEVLSKIGK-HTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNL 188
+V+ ++GK + + G + ++IS I+IGTPG +L + + +
Sbjct: 179 GKVIEQMGKFYPELKLAYAVRGNKLE-RGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKI 236
Query: 189 QLLVLDEADRCL-DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVG 247
++ VLDEAD + G + I LP + Q LLFSAT S+ A+ K V
Sbjct: 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQ------KVVP 290
Query: 248 TMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVY 306
V+ T ++++Q Y+ D K L + + ++ ++F + K ++
Sbjct: 291 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350
Query: 307 ETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQV 366
K ++L L G R +++F + L +T+V ARGID V VI
Sbjct: 351 AELSKEGHQVAL--LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 408
Query: 367 DCPEDVD------TYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
D P D D TY+HR+GR RFGK G ++ M+ + L R++
Sbjct: 409 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 456
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 131 bits (329), Expect = 4e-30
Identities = 73/121 (60%), Positives = 91/121 (74%), Gaps = 4/121 (3%)
Query: 137 GKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEA 196
GK+ FSAGL+IGGK + E ERI+ INIL+ PGR+LQHMD+ V F+ + L +LVLDEA
Sbjct: 106 GKNHDFSAGLIIGGKYLKHEAERINNINILVCAPGRLLQHMDETVSFHATALLMLVLDEA 165
Query: 197 DRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSL--TDY--KQVGTMEVL 252
R LD+GF T++AII NLP RQTLLFSATQ+ S+ DLARLSL T+Y +Q+ MEV
Sbjct: 166 YRILDVGFADTMNAIIENLPKKRQTLLFSATQTISVKDLARLSLKNTEYVWQQMRRMEVY 225
Query: 253 N 253
N
Sbjct: 226 N 226
Score = 90.9 bits (224), Expect = 7e-18
Identities = 68/259 (26%), Positives = 117/259 (44%), Gaps = 37/259 (14%)
Query: 284 IKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHV 343
I +L K L S+ Q V + R +SL + +Q R E ++F R +
Sbjct: 180 IIENLPKKRQTLLFSATQTISVKDLAR-----LSLKNTEYVWQQMRRMEVYNEFVRKRAA 234
Query: 344 CLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
LF++DV ARG+DFP+V+W +Q DCPED +TYIHR GR AR+ ++G++L++L E+
Sbjct: 235 VLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYKEDGEALLILL-ASEKAI 293
Query: 404 LKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYIQKDKE 463
+++L K + + +D +LK Q+ +++ + Q KE
Sbjct: 294 VQQLLQKKVPIKEIKINPEKLIDIQKKLESFSAEDQDLKERAQR----FLQKMQKQPTKE 349
Query: 464 VFHFDKIPLEQFANSLGLPGAPKI--------------------KMRGMKSIEKAKELKN 503
+ + AN + P AP + K + + +AK++K
Sbjct: 350 L-------VMSQANKVTEPRAPSLTNDKVEEFRAFFNEKMSILQKAPSLPNTSEAKKIKE 402
Query: 504 TSRQLLTLAKANDEGDVIK 522
Q L + ++ D +K
Sbjct: 403 VPMQFLDRDEEEEDADFLK 421
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 130 bits (328), Expect = 6e-30
Identities = 115/435 (26%), Positives = 202/435 (46%), Gaps = 77/435 (17%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLK----------GHDVLGAAKTGSGKT 92
F L IS + ++ L++ + +Q +PL L+ G DV +A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 93 LAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVI---- 148
L+++IP+++ L + L ++I PTREL +Q+ +K ++ AGL +
Sbjct: 188 LSYVIPIVQCLSHRT---VPRLRCVVIVPTRELTVQV----AKTFEYYMSGAGLQVCAWT 240
Query: 149 GGKDVTFEKERIS------RINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDM 202
G K + E +++ RI++L+ TPGR++ H+ F+ +L+ +V+DEADR LD
Sbjct: 241 GQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQ 300
Query: 203 GFKRTLDAII-----------------------------------NNLPASRQTLLFSAT 227
F+ +D ++ LP+ Q L+FSAT
Sbjct: 301 SFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSAT 360
Query: 228 QSQSLDDLARLSLTDYK----QVGTMEVLNANSSS------ATPESLQQSYIEVPLPDKL 277
++ +A L L + + Q MEV + + P +LQ+ ++ V +K
Sbjct: 361 LTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVS-SEKP 419
Query: 278 DILFSFIKSHLKSKLIVFLSSSK---QVHFVYETFRK-LQPGISLMHLHGRQKQTARTET 333
+L+ I S + ++ F+ S++ ++H + E + L S + R +
Sbjct: 420 ILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKI 479
Query: 334 LDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLI 393
+ +F+ L +D++ARGID + VI D P V +Y+HR+GR AR G+EG +
Sbjct: 480 ISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWT 539
Query: 394 MLTPEEEEGFLKRLK 408
++ E F K +K
Sbjct: 540 LVQSHEGHHFSKLVK 554
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 130 bits (327), Expect = 8e-30
Identities = 91/314 (28%), Positives = 159/314 (49%), Gaps = 18/314 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D + + + + + F K T +Q E+IPL+L+G D++ A+TGSGKT A+LIP++E
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 103 LYREKWTDMD--GLGALIISPTRELAMQIYEVLSKI----GKHTTFSAGLVIGGKDVTFE 156
L ++K D + G+ AL++ PTRELA Q+Y VL K+ KH F + D
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRF-INVATNSSDTVQR 134
Query: 157 KERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP 216
+ +I+I TP R + H+ V L+ LV+DEAD L G+ + + +LP
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLP 193
Query: 217 ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDK 276
Q+ L SAT S+++ L +L V + A L Q ++ DK
Sbjct: 194 RGTQSFLMSATLSKNIASLQKL-------VCRNPFILAVKDKEASGKLTQYVVKCSEQDK 246
Query: 277 LDILFSFIKSHL-KSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLD 335
+ + +K L K K+++F++ + + + + F + Q G+ + L+ +R L+
Sbjct: 247 FLLAYILLKLRLIKGKILIFVNEINRCYRL-KLFLE-QFGLKSLVLNSELPVNSRLHILE 304
Query: 336 KFSRAQHVCLFSTD 349
++++ + + +TD
Sbjct: 305 QYNKGLYQIIIATD 318
Score = 54.7 bits (130), Expect = 5e-07
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 351 VARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEG 402
VARG+DF +V V+ D P + +YIHR+GR AR GK G ++ + P+ E G
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVG 437
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 130 bits (327), Expect = 8e-30
Identities = 108/407 (26%), Positives = 189/407 (45%), Gaps = 25/407 (6%)
Query: 13 KLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESI 72
KLIR +E + N + F++L + Q L+G+ F + ++IQ ++
Sbjct: 63 KLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENAL 122
Query: 73 PLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIY 130
P+ L +++ +++G+GKT AF++ ++ ++ L +SPT ELA+Q
Sbjct: 123 PMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQ----CLCLSPTYELALQTG 178
Query: 131 EVLSKIGK-HTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQ 189
+V+ ++GK + + G + ++IS I+IGTPG +L + + ++
Sbjct: 179 KVIEQMGKFYPELKLAYAVRGNKLE-RGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKIK 236
Query: 190 LLVLDEADRCL-DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGT 248
+ VLDEAD + G + I LP + Q LLFSAT S+ A+ K V
Sbjct: 237 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQ------KVVPD 290
Query: 249 MEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYE 307
V+ T ++++Q Y+ D K L + + ++ ++F + K ++
Sbjct: 291 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 350
Query: 308 TFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVD 367
K ++L L G R +++F + L +T+V ARGID V VI D
Sbjct: 351 ELSKEGHQVAL--LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 408
Query: 368 CPEDVD------TYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
P D D TY+HR+GR RFGK G ++ M+ + L R++
Sbjct: 409 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 455
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 130 bits (327), Expect = 8e-30
Identities = 103/391 (26%), Positives = 186/391 (47%), Gaps = 40/391 (10%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F +L + ++ LK + + + + T IQ +IPL L+G DV+ A+TGSGKT + +P+I+K
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 103 LYREKWTDMDG-LGALIISPTRELAMQIYEVLSKI----GKHTTFSAGLVIGGKDVTFEK 157
+ K + + A++++PT++L Q +V+ ++ GK A + D ++
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGK-VVRVADIADSSNDTVTQR 129
Query: 158 ERISRI-NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP 216
+S +I++ TP +L + + + +++ LV+DEAD G+++ +I +LP
Sbjct: 130 HALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLP 189
Query: 217 ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDK 276
Q +L SAT + DD+ R+ T+++ + L I DK
Sbjct: 190 PIYQAVLVSATLT---DDVVRMKGLCLNNPVTLKL--EEPELVPQDQLSHQRILAEENDK 244
Query: 277 LDILFSFIKSHL-KSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLD 335
IL++ +K L + K I+F++S + + V Q GI L+ R T+
Sbjct: 245 PAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLE--QFGIRACVLNSELPANIRIHTIS 302
Query: 336 KFSRAQHVCLFSTD-------------------------VVARGIDFPSVDWVIQVDCPE 370
+F++ + + ++D +RGIDF V+ VI D P
Sbjct: 303 QFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPR 362
Query: 371 DVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
DV +YIHR GR AR +G L ++ +E +
Sbjct: 363 DVTSYIHRAGRTARGNNKGSVLSFVSMKESK 393
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 129 bits (325), Expect = 1e-29
Identities = 103/385 (26%), Positives = 180/385 (46%), Gaps = 43/385 (11%)
Query: 36 KIAKANLFQDLPISEQTLKGLKEAA--FIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTL 93
K++ F DL + + L L+EAA ++ T +Q +IP L+G V+ AA+TGSGKTL
Sbjct: 121 KLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTL 180
Query: 94 AFLIPVIEKLYREKWTDMDGLGA---LIISPTRELAMQIYEVLSKIGKHTTFSAGLVI-- 148
++L+P++++L + D + A L++ P+RELA Q+ V +G+ S GL++
Sbjct: 181 SYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGR----SLGLLVRD 236
Query: 149 -----GGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG 203
G + + + R ++L+ TPG + + + + + L LVLDEAD LD
Sbjct: 237 LEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRL-ISLEQLSFLVLDEADTLLDES 295
Query: 204 FKRTLDAIINNL-----PAS--------RQTLLFSATQSQSLDDLARLSLTDYKQVGTME 250
F +D I+ PA Q +L AT + + L L +
Sbjct: 296 FLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQL----LNKVASPDAVT 351
Query: 251 VLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSK-------LIVFLSSSKQVH 303
+ ++ ++Q+++ + DK+ L +K +++ ++VF +SS V+
Sbjct: 352 TITSSKLHCIMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVN 411
Query: 304 FVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWV 363
++ + I + L G+ R F ++ L TD+ +RG+D V+ V
Sbjct: 412 WLGYILDDHK--IQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELV 469
Query: 364 IQVDCPEDVDTYIHRVGRAARFGKE 388
+ D P + YIHR GR R G E
Sbjct: 470 VNYDFPPTLQDYIHRAGRVGRVGSE 494
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 129 bits (324), Expect = 2e-29
Identities = 108/423 (25%), Positives = 194/423 (45%), Gaps = 24/423 (5%)
Query: 11 QRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRE 70
+R ++ RD ++ + F ++ SE +K LKE F + IQ
Sbjct: 344 RRSVVYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAM 403
Query: 71 SIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLG-----ALIISPTREL 125
+ + G + A ++GSGKTLA+L+PVI++L E+ +++ PT EL
Sbjct: 404 AFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAEL 463
Query: 126 AMQIYEVLSKIGKH-TTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGF 183
A Q+ I K F + +V GG + E + + +++LI TPGR M++ +
Sbjct: 464 ASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGI-L 522
Query: 184 NTSNLQLLVLDEADRCL-DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTD 242
SNL+ +LDE D D F+ L +IN+ P + Q L +AT + + D
Sbjct: 523 GLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPD 582
Query: 243 YKQVGTMEVLNANSS------SATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVF- 295
+ V V +++ + + + E +K L ++ + SK I+F
Sbjct: 583 CEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFC 642
Query: 296 --LSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ----HVCLFSTD 349
+ + ++V +++ + + + ++ H Q +R + +F+ +Q + L TD
Sbjct: 643 NKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTD 702
Query: 350 VVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGK-EGKSLIMLTPEEEEGFLKRLK 408
+RGIDF VD V+ D P D Y+ RVGR AR + +GK+ I + ++ G +R+
Sbjct: 703 RASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVV-GKQVGLARRII 761
Query: 409 TKN 411
+N
Sbjct: 762 ERN 764
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 127 bits (318), Expect = 8e-29
Identities = 102/390 (26%), Positives = 187/390 (47%), Gaps = 34/390 (8%)
Query: 36 KIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAF 95
+I + ++D + E LKG+ F + IQ+ +I + G D+ A++G+GKT AF
Sbjct: 33 QIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAF 92
Query: 96 LIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTF 155
+ ++ + D L+++ TRE+A Q +G L+ GG +
Sbjct: 93 AVAALQICDMSQ----DVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAA 148
Query: 156 EKERI-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINN 214
+K + + +I++GTPGR+ +HM + N++L V+DEAD L GF+ + +I
Sbjct: 149 DKVALEKKPHIVVGTPGRV-EHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRR 207
Query: 215 LPASR--QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP 272
+ Q +FSAT D L +++ + + +++ + T + ++Q +I++
Sbjct: 208 ITNKDEVQIAMFSATY-----DEEELRVSEEILINPV-IIDLRYNDQTLKGIRQYFIDLR 261
Query: 273 ------------LPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMH 320
L KL L+ + + IVF++S + VY+ + + L
Sbjct: 262 KEPPFRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECEL-- 319
Query: 321 LHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCP--EDVDTYIHR 378
+ Q R TL++F CL S+ +++RGID ++ V +D P E TYIHR
Sbjct: 320 ISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHR 379
Query: 379 VGRAARFGKEGKSLIMLTPEEEEGFLKRLK 408
+GR+ R+G++G ++ ++ E LK LK
Sbjct: 380 IGRSGRYGRKGIAINIVYEHE----LKNLK 405
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 126 bits (317), Expect = 1e-28
Identities = 104/379 (27%), Positives = 182/379 (47%), Gaps = 46/379 (12%)
Query: 80 DVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH 139
D+L A TGSGKTLA+ IP+++ L++ + ++ L +II PT+ L Q+Y L+K+ +
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQ---INRLRCIIIVPTKLLINQVYTTLTKLTQG 285
Query: 140 TTFSAGLVIGGKDVTFEKERISRI--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEAD 197
T+ + + E +++S + +ILI TPGR++ H++ N NL+ L++DEAD
Sbjct: 286 TSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMK-SINLKNLKFLIIDEAD 344
Query: 198 RCLDMGFKRTLDAIINNL--------PASRQTLLFSATQSQSLDDLARLSL--------- 240
R L+ F+ ++++L P + ++FSAT + + + L L+L
Sbjct: 345 RLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQ 404
Query: 241 TD--YKQVGTMEVLNANSSSATPE--------SLQQSYIEVPLPDKLDILFSFIKSHLK- 289
TD Y+ + N N +A S+ Q P+ K+ I +S ++
Sbjct: 405 TDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRL 464
Query: 290 SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR----AQHVCL 345
SKL+ + S+ V + + L +S+ ++ + + + FS A L
Sbjct: 465 SKLLQLICESRSQSSVLKNLQNL--AVSINSVNSNNSKAENKKIVANFSHHSESAGITIL 522
Query: 346 FSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLK 405
+TD+++RGID + VI D P Y+HRVGR AR + G + +L E F
Sbjct: 523 ITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFD 582
Query: 406 RLKT------KNIEPSRLN 418
L K+++P L+
Sbjct: 583 DLNKDLDRDGKSVQPLELD 601
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 125 bits (315), Expect = 2e-28
Identities = 100/350 (28%), Positives = 165/350 (46%), Gaps = 21/350 (6%)
Query: 46 LPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY- 104
+PI + L+ E F T IQ +G ++ G A TG+GKTLAFL+P++ ++
Sbjct: 1 MPI-KPALQAQFEQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDP 59
Query: 105 REKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRI- 163
+ K T + LI++P++ELAMQ V + G S +IGG + + +++ +
Sbjct: 60 KVKQTQV-----LILAPSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDK 114
Query: 164 -NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTL 222
+I++GT GR+L +D + LQ ++ DEAD L + +L A+ LP Q
Sbjct: 115 PHIVVGTLGRVLTMLDGGA-LKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLG 173
Query: 223 LFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFS 282
LFSAT L +A EV + + P ++ + V K +L
Sbjct: 174 LFSATSGVDLKYVA--------DTFGQEVRPVSVGTDAPAAITHEFQYVDQKAKASLLIQ 225
Query: 283 FIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQH 342
++ K + +VF ++ + + T R + + + + +Q R + L F + +
Sbjct: 226 LARN--KQQALVFFNTISGLVNMQATLRHAHASVMSIGSNDK-RQVQRADALRLFKKGEV 282
Query: 343 VCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSL 392
L TDV ARG+D + V+ P+ TYIHR GR R GK G+ L
Sbjct: 283 SLLLVTDVAARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGRMGKPGRVL 332
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 125 bits (314), Expect = 2e-28
Identities = 123/434 (28%), Positives = 208/434 (47%), Gaps = 59/434 (13%)
Query: 6 KHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLK-EAAFIKL 64
K + ++ E + IK + + Y A+ F+DL +S + +KGL E F K
Sbjct: 60 KEEEKPDSILEEPEDSNIKAVTSGDTPYT----SASRFEDLNLSPELMKGLYVEMKFEKP 115
Query: 65 TEIQRESIPLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKL---YREKWTDMDGLGALII 119
++IQ S+P+ + ++ A GSGKT F++ ++ ++ RE AL I
Sbjct: 116 SKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQ-------ALCI 168
Query: 120 SPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-----INILIGTPGRIL 174
PTRELA Q EVL K+GK T +A L + D T +R +++IGTPG +
Sbjct: 169 CPTRELANQNMEVLQKMGKFTGITAELAV--PDSTRGAPAATRGAPVSAHVVIGTPGTLK 226
Query: 175 QHMD-QAVGFNTSNLQLLVLDEADRCLDM-GFKRTLDAI---INNLPASRQTLLFSATQS 229
+ M + +G N +L++LV DEAD L GF+ I I + + Q LLFSAT +
Sbjct: 227 KWMAFKRLGLN--HLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFN 284
Query: 230 QSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPL-PDKLDILFSFIKSHL 288
+++ D ++ D Q L +S++Q + P +K+++ IK +
Sbjct: 285 ETVKDFVARTVKDPNQ------LFVKREDLALDSVKQYKVVCPKEQNKIEV----IKDQI 334
Query: 289 K-----SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHV 343
+ I+F+ + V++ ++ G + +HG ++ R + + +F
Sbjct: 335 MELGDIGQTIIFVKTKASAQKVHKALAEM--GYDVTSVHGNLTESDRDKIVKEFKECLTQ 392
Query: 344 CLFSTDVVARGIDFPSVDWVIQVDCP-------EDVDTYIHRVGRAARFGKEGKSLIMLT 396
L +TDV+ARG D V+ V+ + P D + Y+HRVGRA RFG++G +L
Sbjct: 393 VLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLL 452
Query: 397 PEEEEGFLKRLKTK 410
++G+ K + K
Sbjct: 453 ---DDGWDKEVMEK 463
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 125 bits (313), Expect = 3e-28
Identities = 94/364 (25%), Positives = 181/364 (48%), Gaps = 23/364 (6%)
Query: 46 LPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYR 105
+ + E+ L+G+ F K + IQ+ ++ G DV ++ GSGKT+ LI +++ +
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60
Query: 106 EKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINI 165
E L ++++P R +A + +E L +G++ +A + G D T E ++IS ++
Sbjct: 61 ED----AHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATCL--GFDTTAENDKIS--HV 112
Query: 166 LIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFS 225
L+GTP L ++ +TS +++ VLDEAD L GFK + + ++P Q +L S
Sbjct: 113 LMGTPKDFLSNIPS----DTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLLS 168
Query: 226 ATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDILFSFI 284
AT + D+ + D + +L T E ++Q YI V + K + L +
Sbjct: 169 ATMPSEVLDVTNRFMRD-----PIRIL-VKKDELTLEGIRQFYINVQKDEWKFNCLCDLL 222
Query: 285 KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVC 344
K+ +++ ++F ++ ++V + E + I + HG + R + + F+
Sbjct: 223 KTSRETQALIFCNTRRRVTQLTEQLMSIP--IKVSCFHGNMEHNEREDMVKDFNSRNTRV 280
Query: 345 LFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFL 404
L +TD++ARG++ +I D +++ Y+ R GR FG +G + T E + L
Sbjct: 281 LVTTDLMARGMNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFT-ENDISDL 338
Query: 405 KRLK 408
K+++
Sbjct: 339 KKIE 342
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 121 bits (303), Expect = 5e-27
Identities = 107/387 (27%), Positives = 171/387 (43%), Gaps = 63/387 (16%)
Query: 80 DVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH 139
D+ + TGSGKTL++ +P+++ L + L AL++ PTR+LA+Q+ +V I
Sbjct: 26 DICVNSPTGSGKTLSYALPIVQLLASRP---VRCLRALVVLPTRDLALQVKDVFDAIAPA 82
Query: 140 TTFSAGLVIGGKDVTFEKERI----------------------SRINILIGTPGRILQHM 177
S G +G + E ++ S ++IL+ TPGR++ H+
Sbjct: 83 VGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHI 142
Query: 178 DQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLL-----FSATQSQSL 232
+ GF +L+ LV+DE DR L ++ L ++ S +L F + SL
Sbjct: 143 NNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSL 202
Query: 233 DDLARLSLT------DYKQVGTMEVLNANSSSATPESLQQSYIEVPL-----------PD 275
+ R S+ Y ++ M VL+A + P L Q + PL P+
Sbjct: 203 QTVRRQSVERGFKGKPYPRLVKM-VLSATLTQ-DPSKLIQLDLHHPLFMTTGGSRYRLPE 260
Query: 276 KLDILFSFIKSHLKSKLIVFLSSS----KQVHFV--YETFRKL--------QPGISLMHL 321
KL+ L ++ +K +V L S K + F ET R+L P I
Sbjct: 261 KLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEY 320
Query: 322 HGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGR 381
G Q+ R++ L F + L ++D + RG+D V VI D P T+IHR GR
Sbjct: 321 SGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGR 380
Query: 382 AARFGKEGKSLIMLTPEEEEGFLKRLK 408
AR G+ G+ +L+ E F K L+
Sbjct: 381 TARAGQAGRCFTLLSNHEVRRFSKLLE 407
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 120 bits (302), Expect = 6e-27
Identities = 103/380 (27%), Positives = 174/380 (45%), Gaps = 24/380 (6%)
Query: 46 LPISEQTLKGLKEAAFIKL-TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLY 104
+ I Q L+ L+ IKL T IQ++ +P+ L AA+TG GKT+ +L+P+++KL
Sbjct: 113 MQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLL 172
Query: 105 REKWTDMDGLGA---LIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE-RI 160
+++ L LI++P RELA QI V K+ + T ++GG +
Sbjct: 173 QKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQF 232
Query: 161 SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLP---- 216
++IL+ T G + + + + + ++ LVLDEAD LD F L + P
Sbjct: 233 EEVDILVATLGALSKLVTTGI-YRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLV 291
Query: 217 ----ASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP 272
A Q +L SAT + ++ + V T+ + + + Q ++ +
Sbjct: 292 QKEDAGTQMILASATMPTNTREILHKVI----DVDTIREVVSPHLHRLMSHVTQKFLRLS 347
Query: 273 LPDKLDILFSFIKSHLKSK--LIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTAR 330
D+ L S +K L + LIVF + S FV G++ ++L+G R
Sbjct: 348 KADRPATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNN--SGVNCLNLNGDMLMKIR 405
Query: 331 TETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGK 390
++F L +TDV +RG+D V+ D P V YIHR GR R G K
Sbjct: 406 LGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDK 465
Query: 391 SLI--MLTPEEEEGFLKRLK 408
+L+ +++ E ++R++
Sbjct: 466 ALVTNLISSRREIDVVQRIE 485
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 120 bits (301), Expect = 8e-27
Identities = 112/350 (32%), Positives = 161/350 (46%), Gaps = 44/350 (12%)
Query: 21 QKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHD 80
QK+ KVE P +A + F+ LP + LK + T IQR S + G D
Sbjct: 683 QKVVASTGKVEI--PDMASFDGFKVLP--QDLHDNLKRMKMNRPTPIQRASFFPIMHGDD 738
Query: 81 VLGAAKTGSGKTLAFLIPVIEKLYREKWTDMD------GLGALIISPTRELAMQIYEVLS 134
V+ A TGSGKTLAFLIP + KL E D D LI++PTREL Q +
Sbjct: 739 VVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTAR 798
Query: 135 KIGKHTTFSAGLVIGGKDVTFEKERI---SRINILIGTPGRILQHMDQAVGFNTSNLQLL 191
++ T GL GG + + S++NIL+ T GR LQ A + S ++ +
Sbjct: 799 QLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGR-LQDFVNAGEVSLSKMKYI 857
Query: 192 VLDEADRCLD-MGFKRTLDAIINNLPASR--QTLLFSATQSQSL--DDLARLSLTDYKQV 246
VLDEADR +D + F + II + P R QT+LFSA+ S+ L DDL + Y
Sbjct: 858 VLDEADRMVDSIDFGEEVSKIIGS-PGERTQQTVLFSASFSEDLQSDDLPKFVKEGY--- 913
Query: 247 GTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFI------------KSHLKSKLIV 294
+L + E + Q + VP +K D ++ + K K ++
Sbjct: 914 ---TMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLI 970
Query: 295 FLSSSKQVHFVYETFRKL--QPGISLMHLHGRQKQTARTETLDKFSRAQH 342
F++S K +T L G+S + +H Q Q R TLD F R ++
Sbjct: 971 FVNSVK----FCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKY 1016
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 117 bits (292), Expect = 9e-26
Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 37/328 (11%)
Query: 114 LGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRI--NILIGTPG 171
L L+++PTRELA+Q+ L K+T + GG V ++ER+ R +I++ TPG
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVA-KQERVLRQCPDIVVATPG 399
Query: 172 RILQHMDQAVGF--NTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS------RQTLL 223
R+ + Q ++ LV+DE DR ++ G L +++ L + RQ +
Sbjct: 400 RLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFV 459
Query: 224 FSATQS----------------------QSLDDLARLSLTDYKQVGTMEVLNANSSSATP 261
+SAT + Q++D SL + + ++++ SS T
Sbjct: 460 YSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIE-SLIEELGISQPKIVDITSSQQTA 518
Query: 262 ESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHL 321
++L +S + P+ K L+ FI+ H + IVF +S V + F L + + L
Sbjct: 519 QTLTESRLLCPIDHKDYHLYYFIQRH-PGRTIVFCNSIDCVKRLATLFGLLD--CNPLPL 575
Query: 322 HGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGR 381
H Q R + L++F + L +TDV ARG+D P+V+ VI P + Y+HR GR
Sbjct: 576 HANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGR 635
Query: 382 AARFGKEGKSLIMLTPEEEEGFLKRLKT 409
AR K G +++ + P E + ++K KT
Sbjct: 636 TARANKHGITVMFMEPGEVKSYVKLYKT 663
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 116 bits (291), Expect = 1e-25
Identities = 100/375 (26%), Positives = 170/375 (44%), Gaps = 37/375 (9%)
Query: 61 FIKLTEIQRESIPLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALI 118
F + ++IQ ++P+ L +++ +++G+GKT AF++ ++ ++ + L
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ----CLC 58
Query: 119 ISPTRELAMQIYEVLSKIGKHTT-------FSAGLVIGGKDVTFEKERISRINILIGTPG 171
++PT ELA+Q V+ ++GK + G D+T + I+IGTPG
Sbjct: 59 LAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQ--------IIIGTPG 110
Query: 172 RILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPASRQTLLFSATQSQ 230
+L + + + +++ VLDEAD +D GF I LP+ Q LLFSAT
Sbjct: 111 TVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFED 170
Query: 231 SLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP-LPDKLDILFSFIKSHLK 289
S+ A + D V+ T +++Q Y+ DK L + S
Sbjct: 171 SVWHFAERIIPD------PNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITI 224
Query: 290 SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTD 349
+ I+F + + ++ T +Q G + L G R + +F + L +T+
Sbjct: 225 GQAIIFCQTRRNAKWL--TVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 282
Query: 350 VVARGIDFPSVDWVIQVDCP------EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
V ARGID V V+ D P D +TY+HR+GR RFGK+G + M+ +E
Sbjct: 283 VCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSL 342
Query: 404 LKRLKTKNIEPSRLN 418
+K N +LN
Sbjct: 343 MKIQDHFNSSIKQLN 357
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 115 bits (288), Expect = 3e-25
Identities = 100/375 (26%), Positives = 169/375 (44%), Gaps = 37/375 (9%)
Query: 61 FIKLTEIQRESIPLSLKG--HDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALI 118
F + ++IQ ++P+ L +++ +++G+GKT AF++ ++ ++ + L
Sbjct: 3 FNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ----CLC 58
Query: 119 ISPTRELAMQIYEVLSKIGKHTT-------FSAGLVIGGKDVTFEKERISRINILIGTPG 171
++PT ELA+Q V+ ++GK + G D+T + I+IGTPG
Sbjct: 59 LAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQ--------IIIGTPG 110
Query: 172 RILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPASRQTLLFSATQSQ 230
+L + + + +++ VLDEAD +D GF I LP+ Q LLFSAT
Sbjct: 111 TVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFED 170
Query: 231 SLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVP-LPDKLDILFSFIKSHLK 289
S+ A + D V+ T +++Q Y+ DK L + S
Sbjct: 171 SVWHFAERIIPD------PNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITI 224
Query: 290 SKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTD 349
+ I+F + + ++ T +Q G + L G R +F + L +T+
Sbjct: 225 GQAIIFCQTRRNAKWL--TVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTN 282
Query: 350 VVARGIDFPSVDWVIQVDCP------EDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
V ARGID V V+ D P D +TY+HR+GR RFGK+G + M+ +E
Sbjct: 283 VCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSL 342
Query: 404 LKRLKTKNIEPSRLN 418
+K N +LN
Sbjct: 343 MKIQDHFNSSIKQLN 357
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 108 bits (269), Expect = 4e-23
Identities = 101/371 (27%), Positives = 171/371 (45%), Gaps = 67/371 (18%)
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRE 124
T++QR IP L G V ++TGSGKTL++++P I L + L+I PTRE
Sbjct: 80 TDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLL------ESGDKRLLVIVPTRE 133
Query: 125 LAMQIYEVLSKIGKHTTFSAGL-----VIGGKDVTFEKERISR-INILIGTPGRILQHMD 178
L Q+ +V K FS GL + G + ++ ++SR ++ I TPGR+ + ++
Sbjct: 134 LVSQVGQVFRK------FSEGLLRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELLE 187
Query: 179 -QAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLAR 237
+++G + +V+DEADR + + + I+ + +
Sbjct: 188 LKSIG----GFEYVVVDEADRLMQHDIRSDVTFILERMKPEVASFF-------------- 229
Query: 238 LSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKS----------- 286
S T ++ G +L N S +++ ++ V +K+ +L + S
Sbjct: 230 -SATPFEWSGGTRILVGNVSVG--RDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGV 286
Query: 287 -----HLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
+K K+IVF +S + +++ FR+L + LH R+ R ++ +
Sbjct: 287 DRNGLEVK-KIIVFCNSIRTCENLHKRFRQL------LVLHSRRTMQERKAVIEALE-GE 338
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L +TD+ RGID VD V+ D P VD Y+HR GR R ++G +L M+ E+ E
Sbjct: 339 RAVLIATDLGGRGIDIKDVDLVVNYDLPRAVDGYVHRCGRTGR-QRKGMALSMICREDRE 397
Query: 402 GF--LKRLKTK 410
LKRL K
Sbjct: 398 ILPKLKRLVEK 408
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 103 bits (256), Expect = 1e-21
Identities = 95/378 (25%), Positives = 176/378 (46%), Gaps = 46/378 (12%)
Query: 73 PLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEV 132
P L+ DV AA TGSGKT+ +++PV+ + + L A+I+ P + L QI +
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKP---SKILQAVILVPVQTLVAQIVDE 310
Query: 133 LSKIGKHTTFSAGLVIGGKDVTFEKERISRI----NILIGTPGRILQHMDQAVG--FNTS 186
+ + + + + G + FEKE N+++ TP R++QH+ + + S
Sbjct: 311 FKRWNDESGVAKVVSLSGAN-DFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLS 369
Query: 187 NLQLLVLDEADRCLDMGFKRTLD------------AIINNLPASR---QTLLFSATQSQS 231
L+ L++DEADR + + LD A + ++ R Q ++ SAT S+
Sbjct: 370 KLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKD 429
Query: 232 LDDLARLSL----------TDYKQV--GTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
+++L +L K + G +V + + A P S+ +
Sbjct: 430 VEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLA 489
Query: 280 LFSFIKSHLKSKLIVFL----SSSKQVHFVYETFR-KLQPGISLMHLHGRQKQTARTETL 334
++ I + ++ ++F+ SS++ H + E + + + L G++ R + L
Sbjct: 490 VYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKR----RYKML 545
Query: 335 DKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM 394
+KF++ ++ L +DV+ARG D VD VI + P D ++HR GR R G++G + +
Sbjct: 546 EKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISV 605
Query: 395 LTPEEEEGFLKRLKTKNI 412
E + F+K LK N+
Sbjct: 606 GDKESKRLFVKMLKVTNL 623
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 94.7 bits (234), Expect = 5e-19
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 11/217 (5%)
Query: 177 MDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAII--NNLPASRQ--TLLFSATQSQSL 232
MDQ + + LVLDEADR LDMGF+ + I+ N +P+ + T +FSAT + +
Sbjct: 1 MDQGL-IGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEI 59
Query: 233 DDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKL 292
LA+ L + L +T E++ Q + V +K L + + S L
Sbjct: 60 QLLAQDFLKE-----NYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSL 114
Query: 293 IVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVA 352
+ +K+ + Q ++ +HG KQ R + LD F L +T V A
Sbjct: 115 TLVFVETKRGASDLAYYLNRQ-NYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAA 173
Query: 353 RGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
RG+D P+V VI D P DVD Y+HR+GR R G G
Sbjct: 174 RGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVG 210
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 93.2 bits (230), Expect = 1e-18
Identities = 93/324 (28%), Positives = 140/324 (42%), Gaps = 61/324 (18%)
Query: 65 TEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRE 124
T IQR++IPL L+ ++G +TGSGKTL +LIP I++ + G L+I PT+E
Sbjct: 31 TPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQRA-------ISGEKTLVIVPTKE 83
Query: 125 LAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFN 184
L +Q VL ++ + + L I I TPG+I
Sbjct: 84 LVIQARRVLKRLARGIEEAWKL------------------IEICTPGKI----------E 115
Query: 185 TSNLQLLVLDEADRCL-DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDY 243
+ +LV+DE DR L + K D I +L S Q + FSAT L D+
Sbjct: 116 GMSADMLVVDEIDRILEEPSLKSVFDRINESL--SCQKVFFSAT------------LPDH 161
Query: 244 KQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVH 303
M+V+ + E+++ + +P K L + K IVF ++ V
Sbjct: 162 PL--NMKVVEI--ETRINETVKHFFFYIPSESKEAALLRILDK--TRKTIVFAATKYAVE 215
Query: 304 FVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWV 363
+ E K ++ AR F+ ++ L TDV ARG+D P +D V
Sbjct: 216 LLLEILNK--NNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDVAARGLDIPYLDTV 273
Query: 364 IQVD-CPEDVDTYIHRVGRAARFG 386
+ D C D T++HRVGR G
Sbjct: 274 VNYDLC--DERTFLHRVGRVRGMG 295
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 91.3 bits (225), Expect = 5e-18
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 148 IGGKDVTFEKERISR-INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKR 206
+GG + + E +++ INI++ T GR+L HM GF NLQ LV+DEADR LD+GF+
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 60
Query: 207 TLDAIINNLPASRQTLLFSATQSQSLDDLARLSL 240
L II L RQT+LFSATQ+Q ++DLAR+SL
Sbjct: 61 ELKQIIKLLLTHRQTMLFSATQTQKVEDLARISL 94
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 90.9 bits (224), Expect = 7e-18
Identities = 59/205 (28%), Positives = 112/205 (53%), Gaps = 11/205 (5%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F+D + + L+ + + F +E+Q E IP ++ G DVL AK+G GKT F++ +++
Sbjct: 46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 103 LYREKWTDMDG-LGALIISPTRELAMQIYEVLSKIGKH-TTFSAGLVIGGKDVTFEKERI 160
+ ++G + L++ TRELA QI + + K+ + + GG + ++E +
Sbjct: 106 I-----EPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL 160
Query: 161 SR--INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLD-MGFKRTLDAIINNLPA 217
+ ++++GTPGRIL + + F+ N++ VLDE D+ L+ + +R + I P
Sbjct: 161 KKNCPHVVVGTPGRILA-LVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 219
Query: 218 SRQTLLFSATQSQSLDDLARLSLTD 242
+Q ++FSAT S+ + + R + D
Sbjct: 220 EKQCMMFSATLSKDIRPVCRKFMQD 244
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 89.0 bits (219), Expect = 3e-17
Identities = 88/336 (26%), Positives = 149/336 (44%), Gaps = 58/336 (17%)
Query: 116 ALIISPTRELAMQIYEVLSKIGKHTT---FSAGLVIGGKDVTFEKERISR-INILIGTPG 171
A+I+ P+RELA Q Y + K H + + L+IGG + +K ++ + +I++GTPG
Sbjct: 289 AIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPG 348
Query: 172 RILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR------QTLLFS 225
R+ + ++ + T + + VLDEAD L G+ +D + +P Q ++ S
Sbjct: 349 RLEEMINSGLVLLT-HCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCS 407
Query: 226 AT-QSQSLDDLAR------------------------LSLTDYKQVGTMEVL-------- 252
AT + + +A + L D + T + L
Sbjct: 408 ATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDG 467
Query: 253 -----NANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYE 307
N + + + E+L Q+ + K + I H + I+F + + + E
Sbjct: 468 VHDRDNVHPGNHSKETLSQAVKLL----KGEYCVHAIDKHNMDRAIIFCRTKQDCDNL-E 522
Query: 308 TFRKLQPG--ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQ 365
F + + G S + LHG +K R E L+ F R Q L TDV ARG+D + ++I
Sbjct: 523 RFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMIN 582
Query: 366 VDCPEDVDTYIHRVGRAARFGKEGK--SLIMLTPEE 399
V P+D Y+HR+GR R + G SL+ PE+
Sbjct: 583 VTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEK 618
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 88.6 bits (218), Expect = 3e-17
Identities = 89/347 (25%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 116 ALIISPTRELAMQIYEVLSKIGKHTT---FSAGLVIGGKDVTFEKERISR-INILIGTPG 171
ALI+ P+RELA Q + + K+ L+IGG + + ++I++GTPG
Sbjct: 289 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG 348
Query: 172 RILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR------QTLLFS 225
R L + N S ++ LVLDEAD L G+ ++ + N +P Q ++ S
Sbjct: 349 R-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
Query: 226 ATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFI- 284
AT D+ +LS K + ++ + P+++ ++ VP+ K D L+ +
Sbjct: 408 ATLHSF--DVKKLS---EKIMHFPTWVDLKGEDSVPDTVH--HVVVPVNPKTDRLWERLG 460
Query: 285 KSHLK--------------------SKLIVFLSSSKQVHFVYETFRKLQPGI-------- 316
KSH++ S+ I L V + E K+ I
Sbjct: 461 KSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE--HKMDQAIIFCRTKID 518
Query: 317 ----------------------SLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARG 354
S + LHG +K R + L++F + L TDV ARG
Sbjct: 519 CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARG 578
Query: 355 IDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
ID V +VI V P++ Y+HR+GR R + G ++ ++ E+E+
Sbjct: 579 IDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK 625
Score = 57.4 bits (137), Expect = 8e-08
Identities = 31/71 (43%), Positives = 45/71 (62%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F ++ + + + ++E ++ T+IQ ESIPL L G DVL AA+TGSGKT AF IPVI+
Sbjct: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI 63
Query: 103 LYREKWTDMDG 113
+Y +G
Sbjct: 64 VYETLKDQQEG 74
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 87.8 bits (216), Expect = 6e-17
Identities = 80/351 (22%), Positives = 134/351 (37%), Gaps = 69/351 (19%)
Query: 53 LKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMD 112
L+ + + + + T IQR++IP L+ D++G + + VI + RE W
Sbjct: 320 LEVIDKCGYKESTPIQRQAIPFGLQNRDIIGRDRQVWEAARYPTVAVIGGISREDW---- 375
Query: 113 GLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGR 172
L++G I+I TPG
Sbjct: 376 ------------------------------GFRLLMG-------------CEIVIATPGH 392
Query: 173 ILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSL 232
++ ++ S +VLDEADR +D+GF+ + I+ ++P S A +S
Sbjct: 393 LIDVLENRY-LVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMPQSE------ARHDESE 445
Query: 233 DDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKL 292
D L+ N S P + + +K L +K +
Sbjct: 446 DPEKMLA-------------NFESGKRKPHERVEQVFLMSESEKRKKLLEILKQGFDPAI 492
Query: 293 IVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVA 352
+F++ K + ++ K+ G + LHG + Q R L L +TDV
Sbjct: 493 TIFVNQKKGCDVLAKSLEKM--GYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDVAG 550
Query: 353 RGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGF 403
GID V V+ D +++D YIHR+GR + GK G ++ LT E+ F
Sbjct: 551 HGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFLTKEDSAVF 601
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 85.9 bits (211), Expect = 2e-16
Identities = 71/337 (21%), Positives = 148/337 (43%), Gaps = 18/337 (5%)
Query: 53 LKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMD 112
L+ L++ + T IQ ++ ++ +G +++ + G+GKTL +L+P I K++ ++
Sbjct: 44 LQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQH 103
Query: 113 GLG--ALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTP 170
G LI+ RE A+ + + ++G E ++L+ +
Sbjct: 104 KKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNSQWQGHAE----CDLLVASA 159
Query: 171 GRILQHMDQAVGF-NTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQS 229
GR+LQ +D LVLD DR +D+G + + ++ L Q ++ S + S
Sbjct: 160 GRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRPHAQLIVSSTSWS 219
Query: 230 QSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFS-----FI 284
+L +A L Y + E+ N+ ++++Q V K++ L +
Sbjct: 220 SNLKRMANKFLGQYTAIRVGEI---NNIGVRLQNIRQRVEVVNGLSKVERLMKELTAIYD 276
Query: 285 KSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVC 344
S + K+++++ K V + + R P +HG + + F +
Sbjct: 277 TSDIPGKVVIYVKRQKVVEELVDLIRNCVP---CEGIHGGRTAQENQGIIHDFGTGAYNI 333
Query: 345 LFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGR 381
+ +T + + +D P + +VI D P+++D Y+ R+ R
Sbjct: 334 IVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSR 370
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 85.5 bits (210), Expect = 3e-16
Identities = 121/479 (25%), Positives = 194/479 (40%), Gaps = 104/479 (21%)
Query: 24 KDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAF---------------------- 61
KD+E ++ N I K + F L I +KE
Sbjct: 81 KDVEMNMDSTNKLIQKISNFDQLLILPPVRDAVKEIISKESLKLQDSRKKTSENIIPSPI 140
Query: 62 --IKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYR------EKWTDMDG 113
+ + I + + L+ H + AA+TGSGKT+A+LIP+I+ L R E W +
Sbjct: 141 QTVAIKRISKNLMDPKLQIHAI--AAETGSGKTMAYLIPLIDYLKRQELETPELWETLRK 198
Query: 114 ---LGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEK--ERI-SRINILI 167
+ ++I+ PT EL Q+YE +SK T K ++ E I +RI+IL+
Sbjct: 199 NVLIRSIILVPTHELVDQVYETVSK--TKTLLGLNSFKWDKATSYRDLLENIKNRIDILV 256
Query: 168 GTPGRILQ----HMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLL 223
TPG++L M S + +VLDEAD LD + + I +P +
Sbjct: 257 TTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNINHLIF 316
Query: 224 FSATQSQSLD-DLARLSLT----------------DYKQVGT-------------MEVLN 253
SAT Q + + RL T D+K + + + L
Sbjct: 317 CSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSALSPFKGSKIKALAQTLY 376
Query: 254 ANSSSATPESLQQSYI-----EVPLPDKLDILFSFIKSHL------------KSKLIVFL 296
A S+ T ++ I + +P+ +++L + K++ FL
Sbjct: 377 AISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEERSEKIMPFL 436
Query: 297 SSSKQVHFVYETFRKLQPGISLMHLH--------GRQKQTARTETLDKFSRAQHVCLFST 348
S + + V + P SL G+ K T T +++ HV L +T
Sbjct: 437 SPPRPLSEV--VAQSTSPPTSLKKFEIPDSNIVIGKLKNTNSNGTAPS-NKSLHV-LVTT 492
Query: 349 DVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRL 407
D++ARG++F V V+ D P+ IHRVGR AR K+G + MLT + + + K L
Sbjct: 493 DLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARM-KQGGRVFMLTDSKTKSWAKAL 550
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 81.3 bits (199), Expect = 5e-15
Identities = 76/298 (25%), Positives = 126/298 (41%), Gaps = 51/298 (17%)
Query: 95 FLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVT 154
F I V E + DG A+I++PTRELAMQ Y+ +K K GG ++
Sbjct: 98 FYIEVRENPLEAPLEEGDGPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGIS 157
Query: 155 FEKERISR-INILIGTPGRILQHMDQAVG--FNTSNLQLLVLDEADRCLDMGFKRTLDAI 211
+ + R I++ TPGR++ + G N + LVLDEADR GF+
Sbjct: 158 EQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFE------ 211
Query: 212 INNLPASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNAN-SSSATPESLQQSYIE 270
QVG V+ ++ + +A + Q +++
Sbjct: 212 --------------------------------PQVGGKSVVCSDITQNAVICAEHQKFLK 239
Query: 271 VPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTAR 330
+ L++L + + + IVF+ ++ + + + S+ LHG Q R
Sbjct: 240 L-----LELLGMY---YDEGSSIVFVDKQEKADDIVDQLMRTGYN-SVASLHGGIDQHDR 290
Query: 331 TETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKE 388
++ F L +T V ARG+D ++ V+ DCP + Y+HRVGR R G++
Sbjct: 291 DSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 348
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 80.9 bits (198), Expect = 7e-15
Identities = 41/70 (58%), Positives = 50/70 (70%)
Query: 171 GRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQ 230
GR+L HM GF NLQ LV+DEADR LD+GF+ L II L RQT+LFSATQ+Q
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTHRQTMLFSATQTQ 91
Query: 231 SLDDLARLSL 240
++DLAR+SL
Sbjct: 92 KVEDLARISL 101
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 76.6 bits (187), Expect = 1e-13
Identities = 66/288 (22%), Positives = 133/288 (45%), Gaps = 25/288 (8%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ + E L G+ K + IQ+ +I ++G+ V+ A++G+GK F I ++ +
Sbjct: 79 FDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISILHQ 138
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR 162
+ L + T+ L I +V+ +G H S IGG +V E +++
Sbjct: 139 I------------ELDVKATQAL---IQKVVIALGDHMDASCHTCIGGTNVHAEVQKLQM 183
Query: 163 I--NILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQ 220
+I++GTPG + ++ + +++ VLD+ D L GFK + I L ++ Q
Sbjct: 184 EAPHIIVGTPGHVFDMLNWRY-LSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQELNSNTQ 242
Query: 221 TLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD-KLDI 279
+L SAT + ++ + + ++ + T E + Q YI + + KLD
Sbjct: 243 VVLPSATMPSDVLEVTKKFMREHIWI------LVKKEELTLEGICQFYINMEREEWKLDT 296
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQ 327
L ++ ++ ++FL++ ++ ++ + +S MH QK+
Sbjct: 297 LGDLYETLTIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 76.3 bits (186), Expect = 2e-13
Identities = 94/419 (22%), Positives = 172/419 (40%), Gaps = 56/419 (13%)
Query: 35 PKIAKANLFQDLPIS-------EQTLKGLKEAAFIKL-------TEIQRESI-----PLS 75
PKI+ A++F L S + LK + I L +EI+ S+ PL+
Sbjct: 15 PKISYASVFSTLKPSFFHSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPLT 74
Query: 76 LKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSK 135
L+ GSGKTL +L+ + + ++ + A+I+ PTREL MQ+ +V
Sbjct: 75 LR------QICQGSGKTLTYLLLIFSLINPQR----SSVQAVIVVPTRELGMQVTKVARM 124
Query: 136 IGKHTTFSAG-----LVIGGKDVTFEKE--RISRINILIGTPGRILQHMDQAVGFNTSNL 188
+ + ++ G + K + IL+ T + +++ + F ++
Sbjct: 125 LAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHI-FRIDSV 183
Query: 189 QLLVLDEADRCL----DMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARLSLTDYK 244
++LV+DE D +G R L ++ RQT+ SA+ Q + +
Sbjct: 184 RVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCD-KRQTVFASASIPQHKHFVHDCIQQKWT 242
Query: 245 QVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQ--- 301
+ + V + ++ P L ++ +K +L + ++S I+F+ +
Sbjct: 243 KRDVVHV-HVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSK 301
Query: 302 -------VHFVYETFRKLQPG-ISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVAR 353
+ E + G + ++ L G +R +L + + L STD+ AR
Sbjct: 302 KAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAAR 361
Query: 354 GIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIM--LTPEEEEGFLKRLKTK 410
GID P + D P+ V Y+HR GRA R + I+ L EE L+R + +
Sbjct: 362 GIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYENE 420
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 74.7 bits (182), Expect = 5e-13
Identities = 90/361 (24%), Positives = 154/361 (41%), Gaps = 57/361 (15%)
Query: 68 QRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAM 127
Q+ IP LK +V+ A TGSGKTL++ +P++E L I+ P + L
Sbjct: 52 QKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEMARGR------SLFGAILVPGKPLVR 105
Query: 128 QIYEVLSKIGKHTTFSAGLVIGG--KDVTFE----------------KERISR-----IN 164
Q+Y V+ +I KH V G +D E +ERI+
Sbjct: 106 QVYRVVREI-KHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRASAR 164
Query: 165 ILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASR-QTLL 223
+LIGTP +L M + N+ LV+DEAD ++ +I++ +
Sbjct: 165 VLIGTPRSVLGLMSMS---EIRNVTHLVIDEADLLINPETVGVFASILSVIEMEDIHISC 221
Query: 224 FSATQSQSLDDLARL--SLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILF 281
FSAT ++ + ++ S+T + V + +++ T ++ L
Sbjct: 222 FSATMNEYVSEVIETVKSITKIRVV-SKRLIDHEFVFGTSRKIKHL-----------SLL 269
Query: 282 SFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQ 341
I ++S ++F+ K + + G S ++ R+ Q E LD F +
Sbjct: 270 QIIADGIESPTLIFVKDEKTGEAL-----SMLLGKSAVY---REDQEGSGEVLDGFRLKK 321
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
LF+TD ++RGIDF ++ VI D P ++HR+GR R +G+ + + E+
Sbjct: 322 IWYLFTTDSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRINR-NCQGQKIYTIYSSEDF 380
Query: 402 G 402
G
Sbjct: 381 G 381
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 74.3 bits (181), Expect = 6e-13
Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 48/372 (12%)
Query: 64 LTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREK--WTDMDGLGA---LI 118
L +Q++SI +L A TG GKT AFLIP IE RE+ T++ + LI
Sbjct: 115 LNAVQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILI 174
Query: 119 ISPTRELAMQIY---EVLSKIGKHTTFSAGLVIGGKDVTFEKERIS------RINILIGT 169
++ T L Q++ EVL + +I +D+ EK S + +I T
Sbjct: 175 LANTNSLVEQLFNRCEVLLGL-----IDMEDIIPIRDIKIEKLVASYQFTKDQCDIAFCT 229
Query: 170 PGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMG-FKRTLDAIINNLPA----SRQTLLF 224
G++ ++ NL++++LDE+D+ +D+ F +D +++ L + Q+ F
Sbjct: 230 MGKLKASIEDKT-ILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFF 288
Query: 225 SATQSQSLDDLARLSLTDYKQVG----------------TMEVLN-----ANSSSATPES 263
SA+ +++ D L+ + +G T V+ N + P
Sbjct: 289 SASHNRNEDGSIALTSRQSRMLGENPWSLIHCPRLPGYITQRVIRIGGQRVNDIHSNPWI 348
Query: 264 LQQSYIEVPLPDKLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHG 323
++ + I L D L + S + K + +F + +V + T Q G + +
Sbjct: 349 VKMNIICKLLDDDLKEMGSTKEGPWKHTIAIFCETVSRV--IQVTMALRQMGYNFKPVCS 406
Query: 324 RQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAA 383
+ + TL+ + T++++RGID SV I ++ D +Y+HR+GR
Sbjct: 407 SVLKQQQAITLNDLEFCNIHGVVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMHRIGRVG 466
Query: 384 RFGKEGKSLIML 395
R G G++ +++
Sbjct: 467 RDGCGGRATVLI 478
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 72.4 bits (176), Expect = 2e-12
Identities = 81/349 (23%), Positives = 140/349 (39%), Gaps = 60/349 (17%)
Query: 117 LIISPTRELAMQIYEVLSKIG--------KHTTFSAGLVIGGKDVTFEKERISRINILIG 168
+I+ PTREL Q ++ + + T +AG + T E + +I++G
Sbjct: 309 VILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLE----TGCDIVVG 364
Query: 169 TPGRILQHMDQAVGFNTSNLQLLVLDEADRCL--DMGFKRTLDAIINNLP------ASRQ 220
TP R+ + T NLQ +V+DE D+ L +++I LP RQ
Sbjct: 365 TPSRVFDLIHTGK-LATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQ 423
Query: 221 TLLFSAT-----------QSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYI 269
+ SAT + S L D V+ +S + ++Q +
Sbjct: 424 VIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQ 483
Query: 270 EVPLPD--------------------------KLDILFSFIKSHLKSKLIVFLSSSKQVH 303
+V L D K + I + K IVF + +Q
Sbjct: 484 QVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTKQQCD 543
Query: 304 FVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWV 363
+ + Q +S LHG + R +L+ F + L +DVVARG+D V +V
Sbjct: 544 HMEHFLQ--QNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVPFV 601
Query: 364 IQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEEGFLKRLKTKNI 412
I V P++ Y+HR+GR R + G S+ +++ EE+ + + +++ +
Sbjct: 602 ISVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEEKAWYHKCRSRGV 650
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 65.1 bits (157), Expect = 4e-10
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 28 TKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKT 87
T+ ++ ++ N L + L + E + K + Q ESIP++L G D+L AK
Sbjct: 36 TQTQQQTNQLKNTNTIIALNHKRRLLMRIFEMGWKKPSPFQEESIPIALSGRDILARAKN 95
Query: 88 GSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKH-----TTF 142
G+GK+ A IP++++L +K D + ++I PT A+Q+ ++ ++ KH
Sbjct: 96 GTGKSSAHDIPLLKRLDLKK----DTIQTIVIVPTGGPALQVSQICIQVSKHMGGVKVVM 151
Query: 143 SAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAV 181
+ G G DV ++++I PGRIL + + V
Sbjct: 152 TTGGTNSGDDVL---RLDDTVHMVIAAPGRILNLIKKGV 187
>Hs22041318 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 260
Score = 64.3 bits (155), Expect = 7e-10
Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 59/288 (20%)
Query: 220 QTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI 279
+T+ FSATQ+Q L+DLAR+S K+ ++ + ++AT +SL++ Y+
Sbjct: 2 ETMPFSATQTQKLEDLARISPKKKKKEQMYAGVDNDKATATVDSLKRGYV---------- 51
Query: 280 LFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSR 339
+++KL V ++HF F GI
Sbjct: 52 --------VQAKLRV------ELHFFQ--FCNADSGI----------------------- 72
Query: 340 AQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAAR-FGKEGKSLIMLTPE 398
TD R +D P W++Q P+D Y+HR G AR + G +L+ P
Sbjct: 73 ------LCTDEAGRELDIPG--WIVQYYPPDDPKEYVHRRGTIARDLNERGHALLSFCP- 123
Query: 399 EEEGFLKRLKTKNIEPSRLNXXXXXXXXXXXXXXXXXFKDPELKYLGQKAFISYVRSIYI 458
EE GF+ LK + S + K+ L Q+A+ SY+R
Sbjct: 124 EELGFVCYLKQPKVPLSEFDFSWPKISDIQSWFVKLMKKNYFLHKSAQEAYKSYIRVNDS 183
Query: 459 QKDKEVFHFDKIPLEQFANSLGLPGAPKIKMRGMKSIEKAKELKNTSR 506
+++F+ + + L Q A S G P + + + K K+ SR
Sbjct: 184 HSLRQIFNVNNLNLPQVALSFGFKVPPSVDVNVNSNEGKHKKRGGESR 231
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 64.3 bits (155), Expect = 7e-10
Identities = 36/101 (35%), Positives = 58/101 (56%), Gaps = 12/101 (11%)
Query: 41 NLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI 100
+LF DL + E + +K A + + T +Q+ SIP G D++ A+TGSGKT AFL+P++
Sbjct: 363 SLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLV 422
Query: 101 EKLYRE-------KWTDMDGL-----GALIISPTRELAMQI 129
+ ++ T G AL++SPTREL++Q+
Sbjct: 423 NAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 62.8 bits (151), Expect = 2e-09
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 43 FQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEK 102
F D+ +SE L+G+ K + IQ+ +I +KG+ V+ A++G+GK F I ++++
Sbjct: 18 FDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQQ 77
Query: 103 LYREKWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERI 160
+ D+ AL+++PT+ELA QI +V+ +G + S I G ++ E +++
Sbjct: 78 IE----LDLKATQALLLAPTQELAQQIQKVVMALGDYMGASCHACIRGTNMRAEVQKL 131
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 61.2 bits (147), Expect = 6e-09
Identities = 66/277 (23%), Positives = 112/277 (39%), Gaps = 19/277 (6%)
Query: 121 PTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISR-INILIGTPGRILQHMDQ 179
P +E + YE + K +V G D+ + + + ++L+ TPG ++ M++
Sbjct: 196 PQQENWLYRYEEVRKFSYQPRVHPCVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMER 255
Query: 180 A-VGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINN----LPASRQTLLFSATQSQSLDD 234
+G + + LVLDEADR LDMGF + I+ L ++FSAT +
Sbjct: 256 GKIGLDFC--KYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQM 313
Query: 235 LARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKLIV 294
LAR L +Y + V +T E++ Q + V PDK L + + K L +
Sbjct: 314 LARDFLDEYIFLAVGRV------GSTSETITQEVVWVEEPDKRSFLLDLLNAPGKDSLTL 367
Query: 295 FLSSSKQVHFVYETF--RKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVVA 352
+K+ E F ++ P S +HG Q Q R ++ +
Sbjct: 368 VFVETKKGEDSLENFLYHEVYPCTS---IHGDQSQRDREGGPSSVLLGENPNSSGYSCGS 424
Query: 353 RGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEG 389
+ D P D++ Y+ +G G +G
Sbjct: 425 MKTRHFKCETCFNFDLPSDIEEYVPCIGCTGCVGIQG 461
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 59.7 bits (143), Expect = 2e-08
Identities = 39/129 (30%), Positives = 62/129 (47%), Gaps = 6/129 (4%)
Query: 264 LQQSYIEVPLPDKLDILFSFIKSHLKS---KLIVFLSSSKQVHFVYETFRKLQPGISLMH 320
L+Q ++EV + ++D L +K++ + + +VF ++ + V V + K I
Sbjct: 396 LKQKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKAS--IQCYR 453
Query: 321 LHGRQKQTARTETLDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVG 380
H K R L F V + TD ARG+D P+V VIQ D ++HR+G
Sbjct: 454 YHKNHKLDERANILADFRETGGVFV-CTDAAARGVDVPNVSHVIQADFASSAVDFLHRIG 512
Query: 381 RAARFGKEG 389
R AR G+ G
Sbjct: 513 RTARAGQYG 521
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 58.9 bits (141), Expect = 3e-08
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 59/244 (24%)
Query: 156 EKERISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNL 215
+K ++ +I++GTPGR+ ++ + +++ VLDEAD L FK + I L
Sbjct: 53 QKLQMEAPHIIMGTPGRVSDMLNWRY-LSPKYIKMFVLDEADEMLSHRFKDQICDIFQML 111
Query: 216 PASRQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPD 275
++ Q +L SAT S D
Sbjct: 112 NSNTQVVLL---------------------------------SATIPS-----------D 127
Query: 276 KLDILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLD 335
L++ F++ ++ + K+ + F ++ +HG Q R +
Sbjct: 128 VLEVTKKFMRDPIRILV-------KKEELTLKDF-------TVSAMHGDMDQKERDVVMR 173
Query: 336 KFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIML 395
++ L +TD++ RGID + VI D P + + YIHR+GR +FG +G ++ M+
Sbjct: 174 EYRSGSSRVLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVAINMV 233
Query: 396 TPEE 399
++
Sbjct: 234 AEDK 237
>At3g02060 [A] KOG0344 ATP-dependent RNA helicase
Length = 822
Score = 57.0 bits (136), Expect = 1e-07
Identities = 72/301 (23%), Positives = 124/301 (40%), Gaps = 54/301 (17%)
Query: 113 GLGALIISPTRELAMQIYEVLS-KIGKHTTFSAGLVI-----GGKDVTFEKERISRINIL 166
G A++++PT LA Q Y+V+S + + GL+ K+ E + +NI+
Sbjct: 318 GKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNII 377
Query: 167 IGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSA 226
+GT + + SNL LLV+DE R G K+ I + S L SA
Sbjct: 378 VGTHSLLGSRVVY------SNLGLLVVDEEQR---FGVKQKEK--IASFKTSVDVLTLSA 426
Query: 227 TQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDI---LFSF 283
T + L+LT ++ S I P P+++ I L SF
Sbjct: 427 TP---IPRTLYLALTGFRDA--------------------SLISTPPPERIPIKTHLSSF 463
Query: 284 IKSHLKSKLIVFLSSSKQVHFVYETFRKLQ----------PGISLMHLHGRQKQTARTET 333
K + + L QV +V + L+ P I + HG+Q ET
Sbjct: 464 RKEKVIEAIKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEET 523
Query: 334 LDKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRV-GRAARFGKEGKSL 392
+++F++ + L T++V G+D + + +I D + ++++ GR R KE +
Sbjct: 524 MERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAY 583
Query: 393 I 393
+
Sbjct: 584 L 584
>ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase
Length = 766
Score = 56.2 bits (134), Expect = 2e-07
Identities = 83/345 (24%), Positives = 139/345 (40%), Gaps = 41/345 (11%)
Query: 68 QRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAM 127
QRE I L G DV TG GK++ + +P + DG+ +++SP L
Sbjct: 242 QREVIQACLSGKDVFVLMPTGGGKSICYQLPALV---------YDGI-TIVVSPLLSLVQ 291
Query: 128 -QIYEVLSKIGKHTTFSAGLVIGGKDVTFE----KERISRINILIGTPGRILQ--HMDQA 180
QI +L K ++ L +D+ F+ E I +I + TP I + H
Sbjct: 292 DQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYV--TPELIAKSGHFHDV 349
Query: 181 VG--FNTSNLQLLVLDEADRCLDMGFK-----RTLDAIINNLPA-SRQTLLFSATQSQSL 232
+ L+ V+DEA G + L ++ P+ L +ATQ +
Sbjct: 350 LSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVEM 409
Query: 233 DDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSHLKSKL 292
D L L + + T ++ S+ + S +E LDI SF+++H
Sbjct: 410 DILENLGI---RGCETFKMSFNRSNLRYEVRAKTSTVE------LDIA-SFVQTHFPDCC 459
Query: 293 -IVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFSRAQHVCLFSTDVV 351
I++ +S K+ + E KL + H + R +K++R + + +T
Sbjct: 460 GIIYCTSKKECEMISE---KLGKYMGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAF 516
Query: 352 ARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLT 396
GID V +VI P+ ++ Y GRA R G E ++ T
Sbjct: 517 GMGIDKKDVRFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYT 561
>YMR190c [L] KOG0351 ATP-dependent DNA helicase
Length = 1447
Score = 55.8 bits (133), Expect = 2e-07
Identities = 94/398 (23%), Positives = 165/398 (40%), Gaps = 45/398 (11%)
Query: 13 KLIRERDSQKIKDLETKVEE---YNPKIAKANLFQDL-----PISEQTLKGLKEAAFIK- 63
K+ RE+ S KD E ++ + ++K+NL P S++ L L E +
Sbjct: 619 KIKREKSSVSQKDEEDDFDDDFSLSDIVSKSNLSSKTNGPTYPWSDEVLYRLHEVFKLPG 678
Query: 64 LTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTR 123
Q E++ +L+G DV TG GK+L + +P + K + T ++ISP
Sbjct: 679 FRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGT------TIVISPLI 732
Query: 124 ELAM-QIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRI--LQHMDQA 180
L Q+ +L+K K + FS+ + TF ++++ +P I + +A
Sbjct: 733 SLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISASEQCKRA 792
Query: 181 VG--FNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSATQSQSLDDLARL 238
+ + L +V+DEA + G ++ + L F + + +A L
Sbjct: 793 ISRLYADGKLARIVVDEAHCVSNWG---------HDFRPDYKELKFFKREYPDIPMIA-L 842
Query: 239 SLTDYKQVGTMEVLNANSSSATPESLQQS------YIEVPLPDKLDI--LFSFIKSHLKS 290
+ T +QV M++++ N P L+QS Y EV K I + +KS K+
Sbjct: 843 TATASEQV-RMDIIH-NLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKN 900
Query: 291 KL-IVFLSSSKQVHFVYETFRKLQ-PGISLMHLHGRQKQTARTETLDKFSRAQHVCLFST 348
+ I++ S K +T ++Q GI + H + R + + + +T
Sbjct: 901 QTGIIYCHSKKSCE---QTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICAT 957
Query: 349 DVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFG 386
GID P V +V P ++ Y GRA R G
Sbjct: 958 VAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDG 995
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 52.0 bits (123), Expect = 3e-06
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 284 IKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGI--SLMHLHGRQKQTARTETLDKFSRAQ 341
+ S + + I+F + K V T + P I + LHG Q+ R TL F
Sbjct: 561 VYSGSEGRAIIFCETRKNV-----TEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREDS 615
Query: 342 HVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPEEEE 401
L +T+V A + P VD VIQ P+DV+ IHR G R G +G + + E+EE
Sbjct: 616 FKVLVATNVAAHSLHIPEVDLVIQHSPPQDVEARIHRSGCTGRAG-QGFVYVFINQEKEE 674
>At1g27880 [L] KOG0351 ATP-dependent DNA helicase
Length = 941
Score = 50.8 bits (120), Expect = 8e-06
Identities = 83/413 (20%), Positives = 164/413 (39%), Gaps = 48/413 (11%)
Query: 4 KQKHNTQQRKLIRERDSQKIKDLETKVEEYNPKIAKANLFQDLPISEQTLKGLKEAAF-- 61
K+K + + E +S K +E + + + A L S++ L L +
Sbjct: 208 KKKEADGDGESLLEEESDLQKQIEDEANGFISSVEDAILAVKTEASDENLTKLLNLVYGY 267
Query: 62 IKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISP 121
+ Q ++I + L G + TG+GK+L + IP + + G+ L++SP
Sbjct: 268 DSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI---------LPGI-TLVVSP 317
Query: 122 TRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAV 181
L + + L I K S+ T K + I +L +P R+L ++
Sbjct: 318 LVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLNVEFLSM 377
Query: 182 GFNTSNLQLLVLDEADR-----------CLDMGFKRTLDAIINNLPAS---RQTLLFSAT 227
+ ++ L+V+DEA CL + L+ N P+ + ++LFS
Sbjct: 378 FRMSLSVSLVVVDEAHCVSECIYCLSLFCLSWLLRAILNRSHNFRPSYMRLKASMLFSEL 437
Query: 228 QSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLDILFSFIKSH 287
+++ + L++T T++ + ++ + +Q+S + D ++ S ++
Sbjct: 438 KAECI-----LAMTATATTMTLQAVMSSLEIPSTNLIQKSQLR----DNFELSVSLSGAN 488
Query: 288 LKSKLIVFLSSS--KQVH-------FVYET---FRKLQPG-ISLMHLHGRQKQTARTETL 334
L++ + S K++ F YET + L+ I+ H R
Sbjct: 489 RMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQ 548
Query: 335 DKFSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGK 387
+ F + + +T G+D V VI P ++ Y+ +GRA R G+
Sbjct: 549 ESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGR 601
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,995,170
Number of Sequences: 60738
Number of extensions: 1790674
Number of successful extensions: 7032
Number of sequences better than 1.0e-05: 244
Number of HSP's better than 0.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5928
Number of HSP's gapped (non-prelim): 332
length of query: 770
length of database: 30,389,216
effective HSP length: 114
effective length of query: 656
effective length of database: 23,465,084
effective search space: 15393095104
effective search space used: 15393095104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)