ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2359 good T KOG1882 Signal transduction mechanisms Transcriptional regulator SNIP1, contains FHA domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2359 804422 805072 217
(217 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR016c [T] KOG1882 Transcriptional regulator SNIP1 contains FHA... 189 2e-48
At3g20550 [T] KOG1882 Transcriptional regulator SNIP1 contains F... 78 8e-15
HsM13375987 [T] KOG1882 Transcriptional regulator SNIP1 contains... 74 2e-13
Hs21314720 [T] KOG1882 Transcriptional regulator SNIP1 contains ... 74 2e-13
CE08529 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA... 73 3e-13
7288897 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA... 69 4e-12
>YLR016c [T] KOG1882 Transcriptional regulator SNIP1 contains FHA domain
Length = 204
Score = 189 bits (481), Expect = 2e-48
Identities = 102/202 (50%), Positives = 136/202 (66%), Gaps = 5/202 (2%)
Query: 18 KREGSRYRYDHETKRSRYEGAQKKVILPIFEPSGLLELESHQKKGIQLKHVEPKDAISPH 77
KR + Y H+ K+ + +Q I+P F PSGLLELES+ K+GI LKHVEP+DAISP
Sbjct: 6 KRPYNTRNYGHDDKKFK---SQYIDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPD 62
Query: 78 DFYKKLKVPKWDQIRYELVVYRKGVK--GEVSKTKLHDKSCYIIGRGLGQSLRRFESDGE 135
++ L + D+ YELV+YRK K G + L+ +SCY++GR LG SL D
Sbjct: 63 NYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRT 122
Query: 136 EIILADIPIQEESCSKEHCAVQFRQVGESLIPYLIDLDSSNGTCLNDSAVPSARYIELKS 195
EI++ADI I EE+ SK+HC +QFR V L Y++DLDSSNGTCLN+ +P ARYIEL+S
Sbjct: 123 EIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRS 182
Query: 196 SDIIHVSEDPNDSDYELIFLAV 217
D++ +SE D+DYELIF+ V
Sbjct: 183 GDVLTLSEFEEDNDYELIFMNV 204
>At3g20550 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA domain
Length = 314
Score = 78.2 bits (191), Expect = 8e-15
Identities = 56/171 (32%), Positives = 81/171 (46%), Gaps = 37/171 (21%)
Query: 38 AQKKVILPIFEPSGLLELESHQKKGIQLKHVEPKDAISPHDFYKKLKVPKWDQIRYELVV 97
A KK P FE SG L E+++ +GI L EP +A P + R+ L V
Sbjct: 154 AAKKKEEPSFELSGKLAEETNRYRGITLLFNEPPEARKPSE-------------RWRLYV 200
Query: 98 YRKGVKGEVSKTKLHDKSCYIIGRGLGQSLRRFESDGEEIILADIPIQEESCSKEHCAVQ 157
++ G LH +SCY+ GR E +ADIP SCSK+H +Q
Sbjct: 201 FKDGEPLN-EPLCLHRQSCYLFGR--------------ERRIADIPTDHPSCSKQHAVIQ 245
Query: 158 FRQV---------GESLIPYLIDLDSSNGTCLNDSAVPSARYIELKSSDII 199
+R++ G+ + PY++DL S+N T +N+S + RY EL D I
Sbjct: 246 YREMEKEKPDGMMGKQVKPYIMDLGSTNKTYINESPIEPQRYYELFEKDTI 296
>HsM13375987 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA domain
Length = 396
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/164 (32%), Positives = 79/164 (47%), Gaps = 38/164 (23%)
Query: 45 PIFEPSGLLELESHQKKGIQLKHVEPKDAISPHDFYKKLKVPKWDQIRYELVVYRKGVKG 104
P FE SG L +++ +G+ +K+ EP +A P K+ ++ + V+Y
Sbjct: 224 PSFELSGALLEDTNTFRGVVIKYSEPPEARIPK---KRWRLYPFKNDEVLPVMY------ 274
Query: 105 EVSKTKLHDKSCYIIGRGLGQSLRRFESDGEEIILADIPIQEESCSKEHCAVQFR----- 159
+H +S Y++GR RR +ADIPI SCSK+H Q+R
Sbjct: 275 ------IHRQSAYLLGRH-----RR---------IADIPIDHPSCSKQHAVFQYRLVEYT 314
Query: 160 ----QVGESLIPYLIDLDSSNGTCLNDSAVPSARYIELKSSDII 199
VG + PY+IDL S NGT LN+ + RY ELK D++
Sbjct: 315 RADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVL 358
>Hs21314720 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA domain
Length = 396
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/164 (32%), Positives = 79/164 (47%), Gaps = 38/164 (23%)
Query: 45 PIFEPSGLLELESHQKKGIQLKHVEPKDAISPHDFYKKLKVPKWDQIRYELVVYRKGVKG 104
P FE SG L +++ +G+ +K+ EP +A P K+ ++ + V+Y
Sbjct: 224 PSFELSGALLEDTNTFRGVVIKYSEPPEARIPK---KRWRLYPFKNDEVLPVMY------ 274
Query: 105 EVSKTKLHDKSCYIIGRGLGQSLRRFESDGEEIILADIPIQEESCSKEHCAVQFR----- 159
+H +S Y++GR RR +ADIPI SCSK+H Q+R
Sbjct: 275 ------IHRQSAYLLGRH-----RR---------IADIPIDHPSCSKQHAVFQYRLVEYT 314
Query: 160 ----QVGESLIPYLIDLDSSNGTCLNDSAVPSARYIELKSSDII 199
VG + PY+IDL S NGT LN+ + RY ELK D++
Sbjct: 315 RADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVL 358
>CE08529 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA domain
Length = 299
Score = 73.2 bits (178), Expect = 3e-13
Identities = 51/161 (31%), Positives = 78/161 (47%), Gaps = 42/161 (26%)
Query: 50 SGLLELESHQKKGIQLKHVEPKDAISPHDFYKKLKVPKWDQIRYELVVYRKGVKGEVSKT 109
SG L +++ +G+ +K+ EP +A P+ R+ L + KGE S
Sbjct: 136 SGALTEDTNTFRGVVIKYNEPPEAKKPN-------------ARWRLYPF----KGEESLQ 178
Query: 110 KL--HDKSCYIIGRGLGQSLRRFESDGEEIILADIPIQEESCSKEHCAVQFRQV------ 161
L H +S Y+IGR + +ADIP+ SCSK+H +QFR +
Sbjct: 179 VLYIHRQSAYLIGR--------------DHKIADIPVDHPSCSKQHAVLQFRSMPFTRDD 224
Query: 162 ---GESLIPYLIDLDSSNGTCLNDSAVPSARYIELKSSDII 199
++PY+IDL S NGT LN+ + RYIEL+ D++
Sbjct: 225 GTKARRIMPYIIDLGSGNGTFLNEKKIEPQRYIELQEKDML 265
>7288897 [T] KOG1882 Transcriptional regulator SNIP1 contains FHA domain
Length = 421
Score = 69.3 bits (168), Expect = 4e-12
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 42/166 (25%)
Query: 45 PIFEPSGLLELESHQKKGIQLKHVEPKDAISPHDFYKKLKVPKWDQIRYELVVYRKGVKG 104
P F SG L ++++ G+ +K+ EP +A P + R+ L + KG
Sbjct: 246 PNFGLSGALTEDTNKLNGVVVKYSEPPEARKP-------------KRRWRLYPF----KG 288
Query: 105 EVSKTKLH--DKSCYIIGRGLGQSLRRFESDGEEIILADIPIQEESCSKEHCAVQFRQV- 161
E + LH +SC+++GR + + D+ + SCSK+H A+Q+R V
Sbjct: 289 ETALPTLHIHRQSCFLVGR--------------DRKVVDLAVDHPSCSKQHAALQYRLVP 334
Query: 162 --------GESLIPYLIDLDSSNGTCLNDSAVPSARYIELKSSDII 199
G+ + YLIDLDS+NGT LN+ + + +Y EL D+I
Sbjct: 335 FEREDGSHGKRVRLYLIDLDSANGTFLNNKKIDARKYYELIEKDVI 380
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,681,945
Number of Sequences: 60738
Number of extensions: 602284
Number of successful extensions: 1388
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 7
length of query: 217
length of database: 30,389,216
effective HSP length: 102
effective length of query: 115
effective length of database: 24,193,940
effective search space: 2782303100
effective search space used: 2782303100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)