ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV2387   suspect: LH   Y     KOG2992  Nuclear structure                                              Nucleolar GTPase/ATPase p130

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV2387 811234  813693 820  
         (820 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKR092c [Y] KOG2992 Nucleolar GTPase/ATPase p130                       56   2e-07
SPBC1711.05 [Y] KOG2992 Nucleolar GTPase/ATPase p130                   52   3e-06

>YKR092c [Y] KOG2992 Nucleolar GTPase/ATPase p130
          Length = 406

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 70/322 (21%), Positives = 129/322 (39%), Gaps = 32/322 (9%)

Query: 67  SNNIAKSSSPDPSIGTCLRSDSLNTSVRSGNKSVNDDLDSLMHQISQEMTAKDEDVNNTS 126
           S++ + SSS   S  +    +S ++S  S + S +D  DS   + S   ++     +++S
Sbjct: 31  SSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSS 90

Query: 127 DPEDEDDAELKVSKTGYFAAYVNDEDTDDRESVKSDIESAKLAESATEINKTDNAKXXXX 186
           D E   +++   S +   ++  +DE + + ES   D    +  ES  E  K         
Sbjct: 91  DSESSSESDSSSSGSSSSSSSSSDESSSESES--EDETKKRARESDNEDAK--------- 139

Query: 187 XXXXXXXXXXKRAKVEVEPVQIVNVGEESFKGDDSEAESVKRADVEVEPFKIVSAEEEPL 246
                     K+AK E E     +  E S  G  S +ES   ++ + +     S+     
Sbjct: 140 --------ETKKAKTEPES---SSSSESSSSGSSSSSESESGSESDSDS----SSSSSSS 184

Query: 247 KGDDTEVELFKNAASEVETSQISVELQDEMIDPTTEIPSRIQGDVAISD-DKGSKDAVDE 305
              +++ E    ++S   +S  S +      D +++  S      + SD D  S  + D 
Sbjct: 185 SDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDS 244

Query: 306 DNWSKSDSHPESIGSQDKEEMPPSSINSLPSE----SQLSIQHSKEGDSNDSDSLLNGYG 361
           D+   SDS   S  S D+     SS +   S+    S+L  + +   +S   ++  +   
Sbjct: 245 DSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASSNE 304

Query: 362 SEPSLMKDNASPVKLRKTSKTD 383
           S PS    ++S  KL   + TD
Sbjct: 305 STPS-ASSSSSANKLNIPAGTD 325


>SPBC1711.05 [Y] KOG2992 Nucleolar GTPase/ATPase p130
          Length = 451

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 66/306 (21%), Positives = 121/306 (38%), Gaps = 30/306 (9%)

Query: 29  SASKANYDGADWD-AYSSNSEDEGLTNNIPQLPQVNIPESNNIAKSSSPDPSIGTCLRSD 87
           S+S+A+  G+  D + SS+SE E  +            E N+ + SSS   S  +   SD
Sbjct: 98  SSSEASGSGSSSDESDSSSSESESSS------------EDNDSSSSSSDSESESSSEDSD 145

Query: 88  SLNTSVRSGNKSVNDDLDSLMHQISQEMTAKDEDVNNTSDPEDEDDAELKVSKTGYFAAY 147
           S ++S  S ++S ++  DS     S E  +  ED +++S   D +            ++ 
Sbjct: 146 SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 205

Query: 148 VNDEDTDDRESVKSDIESAKLAESATEINKTDNAKXXXXXXXXXXXXXXKRAKVEVEPVQ 207
            ++ ++    S  S   S+  +ES++E N + ++                 +  + E   
Sbjct: 206 DSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSE--- 262

Query: 208 IVNVGEESFKGDDSEAESVKRADVEVEPFKIVSAEEEPLKGDDTEVELFKNAASEVETSQ 267
                E S K  DS + S   +D E +     S  E     +D++      ++S    S 
Sbjct: 263 ----SESSSKDSDSSSNS---SDSEDDSSSDSSDSESESSSEDSD----STSSSSDSDSS 311

Query: 268 ISVELQDEMIDPTTEIPSRIQGDVAISDDKGSKDAVDEDNWSKSDSHPESIGSQDKEEMP 327
            S E  +   D TT      Q     +  + S    DED+   S  H +S+  + +++  
Sbjct: 312 SSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDS---SKIHDKSLKRKHEDDES 368

Query: 328 PSSINS 333
            +S  S
Sbjct: 369 STSTKS 374


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.303    0.123    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,851,466
Number of Sequences: 60738
Number of extensions: 2140479
Number of successful extensions: 8077
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7970
Number of HSP's gapped (non-prelim): 20
length of query: 820
length of database: 30,389,216
effective HSP length: 115
effective length of query: 705
effective length of database: 23,404,346
effective search space: 16500063930
effective search space used: 16500063930
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)