ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2389 good J KOG1068 Translation, ribosomal structure and biogenesis Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2389 814510 813776 -245
(245 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR195w [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 382 e-106
SPAC3G9.10c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex s... 186 2e-47
At3g61620 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex sub... 147 2e-35
Hs9506689 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex sub... 143 3e-34
7298022 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 138 6e-33
CE20469 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 124 1e-28
Hs17402904 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex su... 63 3e-10
At3g46210 [J] KOG1069 Exosomal 3'-5' exoribonuclease complex sub... 63 3e-10
ECU09g0830 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex su... 61 2e-09
Hs9910360 [J] KOG1069 Exosomal 3'-5' exoribonuclease complex sub... 60 3e-09
CE26236_1 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex sub... 59 6e-09
SPBC211.08c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex s... 58 1e-08
SPBC115.01c [J] KOG1069 Exosomal 3'-5' exoribonuclease complex s... 54 2e-07
7293727 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 54 2e-07
At5g14580 [R] KOG1067 Predicted RNA-binding polyribonucleotide n... 52 8e-07
CE02146 [J] KOG1069 Exosomal 3'-5' exoribonuclease complex subun... 50 2e-06
>YGR195w [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 246
Score = 382 bits (980), Expect = e-106
Identities = 181/244 (74%), Positives = 221/244 (90%)
Query: 1 MSRFEIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPS 60
MSR EIYSPEGLR+DGRRWNELR F SINTHP+AADGSSY+EQGNNKIITLV GP+EP
Sbjct: 1 MSRLEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPR 60
Query: 61 SRSQVNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRT 120
+SQ++T +A L+V++N+TKF+K ERSKSSHKNERR LE Q SLVR FEKN+ML++YPRT
Sbjct: 61 LKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRT 120
Query: 121 SIDVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEEN 180
ID+++H L+ DGGI+G+++NGITLALIDAGI+M+D++SG+SVGLYDTTPLLD NSLEEN
Sbjct: 121 VIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
Query: 181 AMSSVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKHGKTRV 240
AMS+VT+G +GKSEKLSLL+VEDK+PLDRLE+V+AIGIAG HR+RDLMD+ELRKH + RV
Sbjct: 181 AMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRV 240
Query: 241 ENSS 244
N+S
Sbjct: 241 SNAS 244
>SPAC3G9.10c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 242
Score = 186 bits (473), Expect = 2e-47
Identities = 100/244 (40%), Positives = 153/244 (61%), Gaps = 2/244 (0%)
Query: 1 MSRFEIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPS 60
MS FEI S EGLR DGRRW+E+R+F C I P+ +GS+++E GN K++ +V GP EP
Sbjct: 1 MSHFEILSLEGLRNDGRRWDEMRNFQCRIGIEPSE-NGSAFIELGNTKVLCIVDGPSEPV 59
Query: 61 SRSQVNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRT 120
+S+ + ++V IN+ F+ ++ K K++RR +L TFE+ + LYPR+
Sbjct: 60 IKSKARADRTFVNVEINIASFSTID-VKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRS 118
Query: 121 SIDVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEEN 180
I V +H LQ DG ++ + +N TLALIDAGI + DFV + G+ ++ LLDLNSLEE+
Sbjct: 119 QISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEES 178
Query: 181 AMSSVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKHGKTRV 240
A+S +T+ +G +K+ + +E + LD LESVM + IAG+ I + M +R+ K +
Sbjct: 179 ALSWLTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSAKPAL 238
Query: 241 ENSS 244
+ S
Sbjct: 239 ASLS 242
>At3g61620 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 241
Score = 147 bits (370), Expect = 2e-35
Identities = 86/235 (36%), Positives = 137/235 (57%), Gaps = 5/235 (2%)
Query: 5 EIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQ 64
E +PEGLR+DGRR+NE+R + + ADGS+ E GN K+I V GP+E ++SQ
Sbjct: 2 EYVNPEGLRLDGRRFNEMRQIVAEVGV-VSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60
Query: 65 VNTKQ-ATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSID 123
A + ++ +F+ +R + K +RR+ E + +T E ++ L P + ID
Sbjct: 61 QKKNDHAVVLCEYSMAQFSTGDRRRQ--KFDRRSTELSLVIRQTMEACILTELMPHSQID 118
Query: 124 VQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEENA-M 182
+ + LQ DGG A +N TLAL DAGI M D S G ++TPLLDLN +E++A
Sbjct: 119 IFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGG 178
Query: 183 SSVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKHGK 237
+ VT+G + K +K+SLL ++ K+P++ E+V A+ G I + + + L+++ K
Sbjct: 179 ADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTK 233
>Hs9506689 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 245
Score = 143 bits (360), Expect = 3e-34
Identities = 85/237 (35%), Positives = 131/237 (54%), Gaps = 4/237 (1%)
Query: 1 MSRFEIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQE-P 59
M+ E+ S +G RVDGRR ELR + A DGS+Y+EQGN K + +V GP E
Sbjct: 1 MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQA-DGSAYIEQGNTKALAVVYGPHEIR 59
Query: 60 SSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPR 119
SR++ +A ++ + F+ ER + H +R++ E L +TFE ++ L+PR
Sbjct: 60 GSRARALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPR 118
Query: 120 TSIDVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEE 179
+ ID+ V LQ DGG A +N TLA++DAGI M DFV S G D T L DL+ +EE
Sbjct: 119 SQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
Query: 180 NAMS-SVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKH 235
A + + + S +++LL ++ ++ D LE V+ + L+D+ +R+H
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQH 235
>7298022 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 246
Score = 138 bits (348), Expect = 6e-33
Identities = 76/235 (32%), Positives = 133/235 (56%), Gaps = 8/235 (3%)
Query: 3 RFEIYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSR 62
++++ S +GLR+DGRR +ELR C + DGS+Y+EQGN K++ V GP +
Sbjct: 4 KYDLLSEQGLRLDGRRPHELRRIKCKLGVFEQP-DGSAYMEQGNTKVLAAVYGPHQAKG- 61
Query: 63 SQVNTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSI 122
N ++ ++ + F+ ER K+ + +R++LE++ L + + LYPR+ I
Sbjct: 62 ---NQTESVINCQYSQATFSTAER-KNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQI 117
Query: 123 DVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTT-PLLDLNSLEE-N 180
D+ V LQ DG LN TLALIDAGI + +F+ + L + PL D++ EE +
Sbjct: 118 DIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVS 177
Query: 181 AMSSVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKH 235
+T+ + +EK++ L + ++ +D LE+V+ +AG IRD+++ +++H
Sbjct: 178 GGPKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEH 232
>CE20469 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 240
Score = 124 bits (311), Expect = 1e-28
Identities = 73/210 (34%), Positives = 121/210 (56%), Gaps = 4/210 (1%)
Query: 6 IYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQV 65
I S G R+DGRR ++R+ N + + NA +GS YLE GN K++ V GP E S ++
Sbjct: 3 IISEHGFRIDGRRPAQIRNINTRLGLNRNA-EGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61
Query: 66 NTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQ 125
K A + + TKF+ +ER K+ + +R++ E L + FE ++ +PR+ +D+
Sbjct: 62 EDKCAIVC-QYSATKFSGLER-KNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 126 VHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEE-NAMSS 184
+Q DG L A +N +LAL DAGI M S + G+ D P++DL S EE + +
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 185 VTIGTIGKSEKLSLLMVEDKVPLDRLESVM 214
VT+ TI +++ L+ +++++ +D L +VM
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVM 209
>Hs17402904 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 272
Score = 63.2 bits (152), Expect = 3e-10
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 36 ADGSSYLEQGNNKIITLVAGPQEPSSRSQVN-----------TKQATLSVTINLTKFAKM 84
A GS+YLE G K++ V+GP++ + + L FA
Sbjct: 49 AKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGR 108
Query: 85 ERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLNGIT 144
R E R L +L E + L YPR ++V L+ G L A L
Sbjct: 109 RRRAPPGGCEERELA--LALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAA 166
Query: 145 LALIDAGIAMYDFVSGVSVGLYD---TTPLLDLNSL-EENAMSSVTIGTIGKSEKLSLLM 200
LAL DAG+ MYD V G + L T LLD L EE A + +T+ + +++ L+
Sbjct: 167 LALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLL 226
Query: 201 VEDKVPL-DRLESVMAIGIAGTHRIRDLMDKELRKHGKTR 239
+ L + + +G+ G R+ ++ + L + + R
Sbjct: 227 GSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSLVRAARRR 266
>At3g46210 [J] KOG1069 Exosomal 3'-5' exoribonuclease complex subunit Rrp46
Length = 239
Score = 63.2 bits (152), Expect = 3e-10
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 13 RVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATL 72
R DGR N+LR CS N + GS+ QG+ K++ V GP+ + +++ N ++A
Sbjct: 5 REDGRTPNQLRPLACSRNIL-HRPHGSASWSQGDTKVLAAVYGPKAGTKKNE-NAEKACF 62
Query: 73 SVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLD 132
V +S K E+ E++ L RT + +L + P T+ V + + D
Sbjct: 63 EVIWK-------PKSGQIGKVEK---EYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDD 112
Query: 133 GGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPL-LDLNSLEENAMSS 184
G +L +N AL+DAGI M + L + L LD N LEE M++
Sbjct: 113 GSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTA 165
>ECU09g0830 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 209
Score = 60.8 bits (146), Expect = 2e-09
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 30/226 (13%)
Query: 6 IYSPEGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQV 65
+ S EG R DGRR NELR + G + QGN ++ + +GP+E
Sbjct: 2 LVSEEGFREDGRRPNELRRIEAT--KRRIGEKGRVDMRQGNTQVSVICSGPREIGK---- 55
Query: 66 NTKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQ 125
LSV + ++ E +E+R E++ L+ F L+ P S+D+Q
Sbjct: 56 ------LSVGVEFYAVSRQEPV-----SEKRASEYEGLLLDIFGDVLL----PEASVDIQ 100
Query: 126 VHALQLDGGILGAMLNGITLALIDAGIAMYD--FVSGVSVGLYDTTPLLDLNSLEEN-AM 182
V + G +L M+N TL L G+ + D + S V+ G +DL S EE+ +
Sbjct: 101 VIVREDGGSLLSTMINCTTLCLSYFGMPLVDMCYSSAVAEG------CVDLASTEESQRV 154
Query: 183 SSVTIGTIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLM 228
VT+ + + + L + +V RL++ + I + I + +
Sbjct: 155 PVVTVAYLMNRKSILYLSLSGRVACSRLQASVLDAIGACNAIGECL 200
>Hs9910360 [J] KOG1069 Exosomal 3'-5' exoribonuclease complex subunit Rrp46
Length = 235
Score = 60.1 bits (144), Expect = 3e-09
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 17/221 (7%)
Query: 22 LRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKF 81
LR F C N + DGS+ QG+ ++ V GP E ++ K ATL V +
Sbjct: 28 LRHFACEQNLL-SRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNK-ATLEVILR---- 81
Query: 82 AKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLN 141
K+ + K+ R + T E ++ L+PRTSI V + + G +L LN
Sbjct: 82 PKIGLPGVAEKSRERLIR------NTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLN 135
Query: 142 GITLALIDAGIAMYDFVSGVSVGL-YDTTPLLDLNSLEENAMSSVTIGTIGKSEKLSLLM 200
+AL+DAG+ M GV+ L D T +LD S +E +V + E+ LLM
Sbjct: 136 AACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVER-KLLM 194
Query: 201 VEDK---VPLDRLESVMAIGIAGTHRIRDLMDKELRKHGKT 238
K + + + A A H R + R++ K+
Sbjct: 195 SSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSKS 235
>CE26236_1 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 252
Score = 58.9 bits (141), Expect = 6e-09
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 35 AADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNE 94
A DGS Y E GN +++ + GP + K +TI L ++
Sbjct: 49 AQDGSGYAEFGNTRVLAQITGPDGDGKWEEDRAK-----ITIELKGI----------EDS 93
Query: 95 RRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLNGITLALIDAGIAM 154
+ E++A L + YP I++++ L DGG+L L+ +TLA+ +GI
Sbjct: 94 VKVAEYRAQLASAVSAVIFASKYPGKVIEIEITVLSDDGGVLSTALSAVTLAISHSGIEN 153
Query: 155 YDFVSGVSVGL-YDTTPLLDLNSLE-ENAMSSVTIGTIGKSEKLSLLMVEDKVPLDRLES 212
++ V V + D L D ++ E E A+ VT + + + + + ++PL S
Sbjct: 154 MGLMASVHVAMNSDGECLTDPSTSESEGAIGGVTFAFVPNLGQTTCVDIYGRIPLKSTSS 213
Query: 213 VM 214
++
Sbjct: 214 LL 215
>SPBC211.08c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 257
Score = 58.2 bits (139), Expect = 1e-08
Identities = 40/130 (30%), Positives = 65/130 (49%), Gaps = 6/130 (4%)
Query: 36 ADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNER 95
A GSSY E KI V+GP+ S++ A L+ L+ F+ R E
Sbjct: 48 AVGSSYFESEKIKIACTVSGPRP--SKTFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEE 105
Query: 96 RTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLDGGI--LGAMLNGITLALIDAGIA 153
++ + + +++LHLYP++SIDV + ++ DG + L A ++ + A+ DA I
Sbjct: 106 KS--YSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLAAAISCASSAIADANID 163
Query: 154 MYDFVSGVSV 163
D V+G SV
Sbjct: 164 CIDLVTGSSV 173
>SPBC115.01c [J] KOG1069 Exosomal 3'-5' exoribonuclease complex subunit Rrp46
Length = 226
Score = 54.3 bits (129), Expect = 2e-07
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 36 ADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNER 95
+DGSS +QG+ ++I V GP + R + +AT+ V +
Sbjct: 10 SDGSSEWKQGSARVICGVNGPIDVKIRDE-RLNKATVEVLVQPVS------------GVA 56
Query: 96 RTLEWQAS--LVRTFEKNLMLHLYPRTSIDVQVHALQLDG-GILGAMLNGITLALIDAGI 152
TLE S +V E + L+ YPRT I V + ++ DG L A++NG LAL+DAGI
Sbjct: 57 ETLEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGI 116
Query: 153 AMYDFVSGVSVGLYD--TTPLLDLNSLEENAMSSVTIGTIGKSEKLSLLMVEDKVPLDRL 210
++ ++ + T D++ S +TI SE L+ +E P+
Sbjct: 117 SLKYIPCAINCHWKNKITQDEPDVDGTINKLESIITICYSISSEPAKLIFLETAGPIPEE 176
Query: 211 ESVMAIGIAGTH 222
+ + A H
Sbjct: 177 DFFRVLETAPLH 188
>7293727 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 326
Score = 53.9 bits (128), Expect = 2e-07
Identities = 34/129 (26%), Positives = 62/129 (47%), Gaps = 4/129 (3%)
Query: 38 GSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKFAKMERSKSSHKNERRT 97
GS+Y+E GN K++ +VA P+E S L+ +N F+ + S + ER
Sbjct: 62 GSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLD-SVPERERHL 120
Query: 98 LEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLNGITLALIDAGIAMYDF 157
+ L + E + + +D++V L DG +L +N +AL++ GI+ YD
Sbjct: 121 ---SSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDL 177
Query: 158 VSGVSVGLY 166
++ + +Y
Sbjct: 178 ITASTACIY 186
>At5g14580 [R] KOG1067 Predicted RNA-binding polyribonucleotide
nucleotidyltransferase
Length = 991
Score = 52.0 bits (123), Expect = 8e-07
Identities = 47/163 (28%), Positives = 73/163 (43%), Gaps = 13/163 (7%)
Query: 10 EGLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKI---ITLVAGPQEPSSRSQVN 66
+G RVDGR +E+R C + P A GS+ +G+ ++ +TL A + S S V
Sbjct: 361 DGFRVDGRHVDEVRPIYCESHYLP-ALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVG 419
Query: 67 TKQATLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTS----I 122
+ + + + E K N R + EK L+ L P + I
Sbjct: 420 PPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLA-----EKALLAVLPPEEAFPYTI 474
Query: 123 DVQVHALQLDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGL 165
+ + DG A + G ++AL+DAGI + V+GVSVGL
Sbjct: 475 RINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGL 517
>CE02146 [J] KOG1069 Exosomal 3'-5' exoribonuclease complex subunit Rrp46
Length = 214
Score = 50.4 bits (119), Expect = 2e-06
Identities = 42/171 (24%), Positives = 76/171 (43%), Gaps = 14/171 (8%)
Query: 22 LRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATLSVTINLTKF 81
LR C ++ NA DGS+ QG I +GP + + +K + ++T++++
Sbjct: 5 LREMRCELSFLKNA-DGSACFSQGATCIWASCSGPGDVHA-----SKASDEAMTLDISYR 58
Query: 82 AKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLDGGILGAMLN 141
A +K + N + T + L L+P T+I V VH +Q DG + +N
Sbjct: 59 ANCGDNKFNVLNN--------IIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAIN 110
Query: 142 GITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEENAMSSVTIGTIGK 192
G AL+D G+ GV + ++D + +E A + + ++ K
Sbjct: 111 GACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCK 161
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,185,788
Number of Sequences: 60738
Number of extensions: 495390
Number of successful extensions: 1370
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 16
length of query: 245
length of database: 30,389,216
effective HSP length: 104
effective length of query: 141
effective length of database: 24,072,464
effective search space: 3394217424
effective search space used: 3394217424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)