ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2533 good K KOG3901 Transcription Transcription initiation factor IID subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2533 864863 865339 159
(159 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML098w [K] KOG3901 Transcription initiation factor IID subunit 148 3e-36
SPCC1494.02c [K] KOG3901 Transcription initiation factor IID sub... 85 4e-17
At1g02680 [K] KOG3901 Transcription initiation factor IID subunit 79 2e-15
7298660 [K] KOG3901 Transcription initiation factor IID subunit 69 3e-12
Hs5032155 [K] KOG3901 Transcription initiation factor IID subunit 68 6e-12
CE02139_1 [K] KOG3901 Transcription initiation factor IID subunit 65 4e-11
ECU04g0950 [K] KOG3901 Transcription initiation factor IID subunit 58 6e-09
SPCC61.02 [K] KOG3902 Histone acetyltransferase PCAF/SAGA subuni... 54 9e-08
>YML098w [K] KOG3901 Transcription initiation factor IID subunit
Length = 167
Score = 148 bits (373), Expect = 3e-36
Identities = 67/117 (57%), Positives = 98/117 (83%), Gaps = 1/117 (0%)
Query: 1 MSRRIRKTSLFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKR 60
MSR+++KT+LF+KDV SL+YA+GDV QPL T+QC+DELV YL D+C NA+++AQ +R
Sbjct: 1 MSRKLKKTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQNSQR 60
Query: 61 NKIKVEDFRFVLRKDEVKLGRAEELIKMNKVITDARKQFDNSEGK-SLKRVKDDGDD 116
NK+++EDF+F LRKD +KLGRAEELI NK+IT+A+KQF+ ++ + SLKR +++ ++
Sbjct: 61 NKLRLEDFKFALRKDPIKLGRAEELIATNKLITEAKKQFNETDNQNSLKRYREEDEE 117
>SPCC1494.02c [K] KOG3901 Transcription initiation factor IID subunit
Length = 132
Score = 85.1 bits (209), Expect = 4e-17
Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 6 RKTSLFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKRNKIKV 65
R+ LF+KD+ SLMYAFGD P P++I ++E+VV Y++++C A A RNK+KV
Sbjct: 13 RRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAG--NRNKVKV 70
Query: 66 EDFRFVLRKDEVKLGRAEELIK 87
+DF+F LR D KLGR EEL++
Sbjct: 71 DDFKFALRDDPKKLGRVEELLR 92
>At1g02680 [K] KOG3901 Transcription initiation factor IID subunit
Length = 127
Score = 79.3 bits (194), Expect = 2e-15
Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 6 RKTSLFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTV--KRNKI 63
++ +LF K++ +MY FGD PLPE++ V+++VV Y++D+ + AQ + KR ++
Sbjct: 26 KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVEYVTDLVT---HKAQEIGSKRGRL 82
Query: 64 KVEDFRFVLRKDEVKLGRAEELIKMNKVITDARKQFDNSE 103
V+DF +++RKD KL R EL+ M + + ARK FD E
Sbjct: 83 LVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDE 122
>7298660 [K] KOG3901 Transcription initiation factor IID subunit
Length = 136
Score = 68.6 bits (166), Expect = 3e-12
Identities = 36/101 (35%), Positives = 60/101 (58%), Gaps = 8/101 (7%)
Query: 10 LFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKRNKIKVEDFR 69
LFSK++ +M+ FGD P ET+ +++LV+ Y+++ A +T +++VED
Sbjct: 37 LFSKELRCMMFGFGDDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRT---GRVQVEDII 93
Query: 70 FVLRKDEVKLGRAEELIKMNKVITDARKQFD-----NSEGK 105
F++RKD K R ++L+ MN+ + ARK FD +EGK
Sbjct: 94 FLVRKDPRKYARVKDLLTMNEELKKARKAFDEIKYVGTEGK 134
>Hs5032155 [K] KOG3901 Transcription initiation factor IID subunit
Length = 124
Score = 67.8 bits (164), Expect = 6e-12
Identities = 31/97 (31%), Positives = 60/97 (60%), Gaps = 3/97 (3%)
Query: 6 RKTSLFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKRNKIKV 65
++ LFSK++ +MY FGD P E++ +++LV+ +++++ A ++ +++V
Sbjct: 27 KRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG---RQGRVQV 83
Query: 66 EDFRFVLRKDEVKLGRAEELIKMNKVITDARKQFDNS 102
ED F++RKD K R ++L+ MN+ + ARK FD +
Sbjct: 84 EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA 120
>CE02139_1 [K] KOG3901 Transcription initiation factor IID subunit
Length = 135
Score = 65.1 bits (157), Expect = 4e-11
Identities = 29/101 (28%), Positives = 63/101 (61%), Gaps = 3/101 (2%)
Query: 7 KTSLFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKRNKIKVE 66
K + +D+ S++Y FGD +P +T+ ++ +V++Y+ ++C A + K +K+ +E
Sbjct: 25 KKHVLRRDLRSMVYGFGDDKEPYDKTLDTLEAIVLNYIKELCQLAM---KVGKPDKMALE 81
Query: 67 DFRFVLRKDEVKLGRAEELIKMNKVITDARKQFDNSEGKSL 107
D +++R+D K R ++L+ M++ + ARKQF++ + + L
Sbjct: 82 DIHYLIRRDPKKFSRVKDLLSMSEELKKARKQFEDMKPQFL 122
>ECU04g0950 [K] KOG3901 Transcription initiation factor IID subunit
Length = 103
Score = 57.8 bits (138), Expect = 6e-09
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 11 FSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKRNKIKVEDFRF 70
F KD+ +MY +GDV P +T + + V+ Y+S + N + AQ + K K ED +
Sbjct: 9 FMKDIKVMMYGYGDVVAPRYDTAEALHGYVLDYMSILLTNTHNMAQV--KGKTKTEDLLY 66
Query: 71 VLRKDEVKLGRAEELIKMNKVITDARKQFD 100
L++D K R L+ N+ I A+K F+
Sbjct: 67 YLKRDRKKYSRVRHLLITNEEIKLAKKAFE 96
>SPCC61.02 [K] KOG3902 Histone acetyltransferase PCAF/SAGA subunit SUPT3H/SPT3
Length = 307
Score = 53.9 bits (128), Expect = 9e-08
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 7 KTSLFSKDVGSLMYAFGDVAQPLPETIQCVDELVVSYLSDICANAYYSAQTVKRNKIKVE 66
+TS + ++ +M+ G+V PLPET Q V+EL+ + ++ A A I VE
Sbjct: 6 RTSKYRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVE 65
Query: 67 DFRFVLRKDEVKLGRAEELIKMNKVITDARKQFDN 101
D F++R D K+ R + + +V A++Q N
Sbjct: 66 DLFFLIRHDRAKVNRLKTYLSWKEVRKKAKEQDAN 100
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,108,680
Number of Sequences: 60738
Number of extensions: 266638
Number of successful extensions: 903
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 8
length of query: 159
length of database: 30,389,216
effective HSP length: 98
effective length of query: 61
effective length of database: 24,436,892
effective search space: 1490650412
effective search space used: 1490650412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)