ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2631.1 suspect: Pn TZ KOG3632 Cytoskeleton Peripheral benzodiazepine receptor PRAX-1
r_klactIV2631.1 suspect: Pn TZ KOG3632 Signal transduction mechanisms Peripheral benzodiazepine receptor PRAX-1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2631.1 898798 898962 55
(55 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs14760799 [TZ] KOG3632 Peripheral benzodiazepine receptor PRAX-1 32 0.16
YOR109w [U] KOG0566 Inositol-145-triphosphate 5-phosphatase (syn... 29 1.1
At1g18050_2 [A] KOG0007 Splicing factor 3a subunit 1 29 1.4
CE28520 [TU] KOG3895 Synaptic vesicle protein Synapsin 28 3.1
Hs12965189 [R] KOG4339 RPEL repeat-containing protein 27 5.3
At4g10840 [Z] KOG1840 Kinesin light chain 27 5.3
Hs4885173 [S] KOG2129 Uncharacterized conserved protein H4 27 6.9
7298300 [LD] KOG4139 Protein kinase essential for the initiation... 27 6.9
Hs7706549 [D] KOG0600 Cdc2-related protein kinase 26 9.0
Hs4885379 [B] KOG4012 Histone H1 26 9.0
Hs4885377 [B] KOG4012 Histone H1 26 9.0
CE26916 [AK] KOG0132 RNA polymerase II C-terminal domain-binding... 26 9.0
7293038 [T] KOG3570 MAPK-activating protein DENN 26 9.0
>Hs14760799 [TZ] KOG3632 Peripheral benzodiazepine receptor PRAX-1
Length = 1052
Score = 32.0 bits (71), Expect = 0.16
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 18 VKMEPPATPPFKSSISAPGLLTSKE-RMTINLGDAKKSL 55
V EPPA PP ++S+ +L KE RM + LG K+L
Sbjct: 315 VGWEPPAVPPGWGTVSSYNVLVDKETRMNLTLGSRTKAL 353
>YOR109w [U] KOG0566 Inositol-145-triphosphate 5-phosphatase (synaptojanin)
INP51/INP52/INP53 family
Length = 1107
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 8 SISSPNLKTPVKMEPPATPPFKSSISAPGLLTSKER 43
S S +K PV PP PP S+SAP TSKE+
Sbjct: 952 SQSRTPIKKPVLRPPP--PPAHKSVSAPAPSTSKEK 985
>At1g18050_2 [A] KOG0007 Splicing factor 3a subunit 1
Length = 146
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 4 PGLISISSPNLKTPVKMEPPATPPFKSSISAPGLLTSKERMTINLGD 50
PG S P +K P PP PP K + P +T KE TI GD
Sbjct: 99 PGFASDQKPTMKYP----PP--PPRKYAAILPEWITGKELETIKEGD 139
>CE28520 [TU] KOG3895 Synaptic vesicle protein Synapsin
Length = 401
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 6 LISISSPNLKTPVKMEPPATPPFKSSIS 33
L ++ +P + +P+ EPPAT P S+++
Sbjct: 294 LRALVAPRITSPIAAEPPATSPTTSAVT 321
>Hs12965189 [R] KOG4339 RPEL repeat-containing protein
Length = 654
Score = 26.9 bits (58), Expect = 5.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 11 SPNLKTPVKMEPPATPPF 28
SP L T + EPP TPPF
Sbjct: 296 SPPLPTHIPPEPPRTPPF 313
>At4g10840 [Z] KOG1840 Kinesin light chain
Length = 609
Score = 26.9 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 3 IPGLISISSPNLKTPVKMEPPATPPFKSSISAP 35
+PGL+S+ +P+ P+++ P T P + P
Sbjct: 4 MPGLVSVKTPSDTPPLRVAVPDTQPLSNPPRTP 36
>Hs4885173 [S] KOG2129 Uncharacterized conserved protein H4
Length = 585
Score = 26.6 bits (57), Expect = 6.9
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 11 SPNLKTPVKMEPPATPP 27
SPN +TPV+ PP PP
Sbjct: 431 SPNTQTPVQPPPPPPPP 447
>7298300 [LD] KOG4139 Protein kinase essential for the initiation of DNA
replication
Length = 1711
Score = 26.6 bits (57), Expect = 6.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 9 ISSPNLKTPVKMEPPATPPFKSSISAPGLLTSKERMTINLGDAKKSL 55
+++P LKTP+K EP A +++ S + R + + K +
Sbjct: 1074 VAAPKLKTPIKQEPVAPSSPRTTRSQAATPVEELRFATEISETVKRM 1120
>Hs7706549 [D] KOG0600 Cdc2-related protein kinase
Length = 1490
Score = 26.2 bits (56), Expect = 9.0
Identities = 14/36 (38%), Positives = 16/36 (43%)
Query: 2 TIPGLISISSPNLKTPVKMEPPATPPFKSSISAPGL 37
T P L +I+SP P PP TPP P L
Sbjct: 525 TPPPLPTIASPPPPLPTTTPPPQTPPLPPLPPIPAL 560
>Hs4885379 [B] KOG4012 Histone H1
Length = 219
Score = 26.2 bits (56), Expect = 9.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 2 TIPGLISISSPNLKTPVKMEP---------PATPPFKSSISAPGLLTSKERMTINLGDAK 52
T P + +P KTPVK + A+ P S + + SKER ++L K
Sbjct: 4 TAPAAPAAPAPAEKTPVKKKARKSAGAAKRKASGPPVSELITKAVAASKERSGVSLAALK 63
Query: 53 KSL 55
K+L
Sbjct: 64 KAL 66
>Hs4885377 [B] KOG4012 Histone H1
Length = 221
Score = 26.2 bits (56), Expect = 9.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 2 TIPGLISISSPNLKTPVKMEPP----------ATPPFKSSISAPGLLTSKERMTINLGDA 51
T P +I +P KTPVK + A+ P S + + SKER ++L
Sbjct: 4 TAPLAPTIPAPAEKTPVKKKAKKAGATAGKRKASGPPVSELITKAVAASKERSGVSLAAL 63
Query: 52 KKSL 55
KK+L
Sbjct: 64 KKAL 67
>CE26916 [AK] KOG0132 RNA polymerase II C-terminal domain-binding protein
RA4 contains RPR and RRM domains
Length = 988
Score = 26.2 bits (56), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 6 LISISSPNLKTPVKMEPPATPPFKSSIS 33
+ISI PN++ PV PP PF+ ++
Sbjct: 656 VISIPPPNIQPPVPHPPPMGFPFQHQLT 683
>7293038 [T] KOG3570 MAPK-activating protein DENN
Length = 2075
Score = 26.2 bits (56), Expect = 9.0
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 6 LISISS--PNLKTPVKM---EPPATPPFKSSISAPG 36
L SISS P L+TP+ PPA PP +IS G
Sbjct: 1919 LASISSPPPKLRTPMSAPPGPPPAIPPRTGAISRSG 1954
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.309 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,582,426
Number of Sequences: 60738
Number of extensions: 118080
Number of successful extensions: 496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 14
length of query: 55
length of database: 30,389,216
effective HSP length: 31
effective length of query: 24
effective length of database: 28,506,338
effective search space: 684152112
effective search space used: 684152112
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)