ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2706 good O KOG2581 Posttranslational modification, protein turnover, chaperones 26S proteasome regulatory complex, subunit RPN3/PSMD3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2706 924498 922981 -506
(506 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER021w [O] KOG2581 26S proteasome regulatory complex subunit RP... 562 e-160
Hs4506229 [O] KOG2581 26S proteasome regulatory complex subunit ... 264 2e-70
7298530 [O] KOG2581 26S proteasome regulatory complex subunit RP... 251 2e-66
At1g75990 [O] KOG2581 26S proteasome regulatory complex subunit ... 241 2e-63
At1g20200 [O] KOG2581 26S proteasome regulatory complex subunit ... 237 4e-62
CE00101 [O] KOG2581 26S proteasome regulatory complex subunit RP... 200 5e-51
ECU05g1540 [O] KOG2581 26S proteasome regulatory complex subunit... 75 2e-13
Hs4502975 [OT] KOG2582 COP9 signalosome subunit CSN3 51 4e-06
>YER021w [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 523
Score = 562 bits (1449), Expect = e-160
Identities = 285/514 (55%), Positives = 388/514 (75%), Gaps = 15/514 (2%)
Query: 6 MDIDSVPEAAVDNNSN---EDAVVDKLLEILKQVSKSTLSMDSRYVWKSLRDFAALRHD- 61
MD+DS + ++ E+ V +LL++L ++SK+TL++D RY+W+SL+D ++LR+
Sbjct: 8 MDVDSSGVNDLHHSEKKYAEEDQVQELLKVLNEISKTTLTLDPRYIWRSLKDLSSLRNQE 67
Query: 62 -VTVENTSILVNLVYPDDSSYKKYLLKTIHPTSRPKVENAVKFREEYPASLYQLQQDGTS 120
+ E VN++YPD SS+KK LLK I + V + + R YPAS Y + + +
Sbjct: 68 LLNAETLCFTVNVLYPDSSSFKKNLLKFITSNHKSSVPGSAELRNSYPASFYSVNTEKKT 127
Query: 121 LDVSSEVNSFVHYIVQSLLLDSNRIDELQQFNKTHVIPQVLKQYNNRNLDLINAKIWFYI 180
++V++E+N F+H +VQ L DS +++L +FN+ VIP +L YN R+L+LINAK+WFYI
Sbjct: 128 IEVTAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYI 187
Query: 181 N-------RANELTSTPNDSSLL-AEMMQYLKSATLKHDNETKATLITSILRQYLRLGEI 232
R++E ++ N + +L + MM++LK A+LKHDNETKA LI ILR +L GE+
Sbjct: 188 YLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEV 247
Query: 233 ELAADFVSKVEFPSGDNVSSPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNS 292
+ A+DF+SK+E+P D VSS LEARY+FYLSKI+AIQLDYS ++EY+I+A+RKAPH S
Sbjct: 248 DSASDFISKLEYPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306
Query: 293 LGFLQQANKLQCCIQLLMGDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSK 352
LGFLQQ+NKL CCIQLLMGDIPEL+FFHQ ++KSLLPYYH+TKAVKLGDL FT +++K
Sbjct: 307 LGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITK 366
Query: 353 YKKELVQDSNYQLCVRLRSNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTVEYMISRA 412
YK+ L++D YQLCVRLRSNVIKTGIR+ISLTYKKISL+DICLKL+LDSEQTVEYM+SRA
Sbjct: 367 YKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRA 426
Query: 413 IRDGVIEAKINHEEGYIETSELLNVYSTKQPQQVFDERIRFVNHLHSDYVTGMRFP-DSR 471
IRDGVIEAKINHE+G+IET+ELLN+Y ++ PQQVFDERI+F N LH +Y+ MR+P D +
Sbjct: 427 IRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPEDKK 486
Query: 472 EEDNSKKLSDESLETTMDLNSMNLSDFDSDLDDV 505
+ N K + E+ + T+D + M+ SDLDD+
Sbjct: 487 TQQNEKSENGENDDDTLDGDLMDDMSDISDLDDL 520
>Hs4506229 [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 534
Score = 264 bits (675), Expect = 2e-70
Identities = 165/492 (33%), Positives = 274/492 (55%), Gaps = 22/492 (4%)
Query: 14 AAVDNNSNE--DAVVDKLLEILKQVSKSTLSMDSRYVWKSLRDFAALRHDVTVENTSILV 71
AAV+++ E ++ + E +KQ+ K+ + R+V ++LR + + V
Sbjct: 58 AAVEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAV 117
Query: 72 NLVYPDDSSYKKYLLKTIHPTSRPKVENAVKFREEYPASLYQLQQDGTSLDVSSEVNSFV 131
+ +++ + +LL + + + + R AS L EV +++
Sbjct: 118 QGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLP----------EVEAYL 167
Query: 132 HYIVQSLLLDSNRIDELQQFNKTHVIPQVLKQYNNRNLDLINAKIWFYINRANELTSTPN 191
+V +++S R E Q+ + + Q + N R LDL+ AK ++Y R E +
Sbjct: 168 QLLVVIFMMNSKRYKEAQKISDD--LMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLD 225
Query: 192 DSSLLAEMMQYLKSATLKHDNETKATLITSILRQYLRLGEIELAADFVSKVEFPSGDNVS 251
+ + + L++ATL+HD + +ATL+ +LR YL + A VSK FP N +
Sbjct: 226 --VVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNN 283
Query: 252 SPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAP-HTKNSLGFLQQANKLQCCIQLLM 310
ARY +Y +I AIQL+YS++ + +ALRKAP HT ++GF Q +KL ++LL+
Sbjct: 284 E--WARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHT--AVGFKQTVHKLLIVVELLL 339
Query: 311 GDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSKYKKELVQDSNYQLCVRLR 370
G+IP+ F Q L++SL+PY+ +T+AV+ G+L F Q L ++ ++ D Y L +RLR
Sbjct: 340 GEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLR 399
Query: 371 SNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTVEYMISRAIRDGVIEAKINHEEGYIE 430
NVIKTG+RMISL+Y +ISL DI KL LDS + E+++++AIRDGVIEA INHE+GY++
Sbjct: 400 HNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQ 459
Query: 431 TSELLNVYSTKQPQQVFDERIRFVNHLHSDYVTGMRFPDSREEDNSKKLSDESLETTMDL 490
+ E++++YST++PQ F +RI F +H+ V MRFP + + + DL
Sbjct: 460 SKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDL 519
Query: 491 N-SMNLSDFDSD 501
+ +++ D D
Sbjct: 520 EFAKEMAEDDDD 531
>7298530 [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 494
Score = 251 bits (640), Expect = 2e-66
Identities = 161/492 (32%), Positives = 266/492 (53%), Gaps = 28/492 (5%)
Query: 6 MDIDSVPEAAVDNNSNED-AVVDKLLEILKQVSKSTLSMDSRYVWKSLRDFAALRHDVTV 64
M++D E D N+D A V ++ E ++Q+ K S +SR++ + LR+ R +
Sbjct: 14 MEVDPTAETLADEKKNQDVAAVQEIREQIRQIEKGVASKESRFILRVLRNLPNTRRKLNG 73
Query: 65 ENTSILVNLVYPDDSSYKKYLLKTIHPTSRPKVENAVKFREEYPASLYQLQQDGTSLDVS 124
L +YP + + + P VE + P +Q T ++
Sbjct: 74 VVFRNLAQSIYPAGADREAAV------ALMPAVEKDATELPDVPK-----KQVATKAPIA 122
Query: 125 SEVNSFVHYIVQSLLLDSNRIDELQQFNKTHVIPQVLKQYNNRNLDLINAKIWFYINRAN 184
EV+++ + ++ L+D++ D + + + N R LDLI AK +FY +R
Sbjct: 123 -EVDAYFYLLLLVKLIDAS--DLKRAGISADALMAKISIQNRRTLDLIGAKSYFYFSRVA 179
Query: 185 ELTSTPNDSSLLAEMMQYLKSATLKHDNETKATLITSILRQYLRLGEIELAADFVSKVEF 244
EL ++ + + + L++ATL++D E +A LI +LR YL + A V K +
Sbjct: 180 ELKNSLE--GIRSFLHARLRTATLRNDFEGQAVLINCLLRNYLHYALYDQADKLVKKSVY 237
Query: 245 PSGDNVSSPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNSLGFLQQANKLQC 304
P ++ S+ AR+ +YL +I A +L+YS +H++++ ALRK+P ++GF Q KL
Sbjct: 238 P--ESASNNEWARFLYYLGRIKAAKLEYSDAHKHLVQALRKSPQHA-AIGFRQTVQKLII 294
Query: 305 CIQLLMGDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSKYKKELVQDSNYQ 364
++LL+G+IPE F Q GL +SL Y+ +T+AV+LG+L F +S+Y + D +
Sbjct: 295 VVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLDHTFT 354
Query: 365 LCVRLRSNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTVEYMISRAIRDGVIEAKINH 424
L +RLR NVIKT IR I L+Y +IS +DI +L LDS + E+++S+AIRDGVIEA ++
Sbjct: 355 LIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAEDAEFIVSKAIRDGVIEATLDP 414
Query: 425 EEGYIETSELLNVYSTKQPQQVFDERIRFVNHLHSDYVTGMRFP--------DSREEDNS 476
+ ++ + E ++YST++PQ F ERI F +LH+ V MR+P +S EE
Sbjct: 415 AQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQSVKAMRYPPKSYGKDLESAEERRE 474
Query: 477 KKLSDESLETTM 488
++ D L M
Sbjct: 475 REQQDLELAKEM 486
>At1g75990 [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 487
Score = 241 bits (614), Expect = 2e-63
Identities = 139/360 (38%), Positives = 220/360 (60%), Gaps = 15/360 (4%)
Query: 125 SEVNSFVHYIVQSLLLDSNRIDELQQFNKTHVIPQVLKQYNNRNLDLINAKIWFYINRAN 184
+E+ + ++IV L+D + +E + + + LK N R +D+I +K++FY + +
Sbjct: 114 AELEIYCYFIVLLFLIDQKKYNEAKVCSTASIAR--LKSVNRRTVDVIASKLYFYYSLSY 171
Query: 185 ELTSTPND-SSLLAEMMQYLKSATLKHDNETKATLITSILRQYLRLGEIELAADFVSKVE 243
ELT ND + + + ++ SATL+HD + TL+ +LR YL + A SK
Sbjct: 172 ELT---NDLAEIRSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKA- 227
Query: 244 FPSGDNVSSPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNSLGFLQQANKLQ 303
P + S+ RY FYL KI IQL+Y+ + E ++ A RKAP SLGF Q NK
Sbjct: 228 -PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA--SLGFRIQCNKWA 284
Query: 304 CCIQLLMGDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSKYKKELVQDSNY 363
++LL+G+IPE + F QKG+EK+L PY+ +T AV++GDL LF + K+ K +D +
Sbjct: 285 IIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTH 344
Query: 364 QLCVRLRSNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTV---EYMISRAIRDGVIEA 420
L VRLR NVI+TG+R IS++Y +ISL+D+ KL L+S V E ++++AIRDG I+A
Sbjct: 345 NLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDA 404
Query: 421 KINHEEGYIETSELLNVYSTKQPQQVFDERIRFVNHLHSDYVTGMRFPDS--REEDNSKK 478
I+H+ G + + E ++YST +PQ F+ RI F ++H++ V +RFP + RE+++ +K
Sbjct: 405 TIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHREKESEEK 464
>At1g20200 [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 488
Score = 237 bits (604), Expect = 4e-62
Identities = 140/383 (36%), Positives = 220/383 (56%), Gaps = 18/383 (4%)
Query: 116 QDGTSLDVSSEVNSFVHYIVQSLLLDSNRIDELQQFNKTHVIPQVLKQYNNRNLDLINAK 175
Q S + +E+ + ++IV L+D + +E + + + LK N R +D+I ++
Sbjct: 106 QAAPSKHLPAELEIYCYFIVLLFLIDQKKYNEAKACSSASIAR--LKNVNRRTIDVIASR 163
Query: 176 IWFYINRANELTSTPNDSSLLAEMMQYLKSATLKHDNETKATLITSILRQYLRLGEIELA 235
++FY + + E T + + + ++ SATL+HD + TL+ +LR YL + A
Sbjct: 164 LYFYYSLSYEQTG--DLAEIRGTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQA 221
Query: 236 ADFVSKVEFPSGDNVSSPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNSLGF 295
SK P + S+ RY FYL KI IQL+Y+ + E ++ A RKAP +LGF
Sbjct: 222 EKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIA--ALGF 277
Query: 296 LQQANKLQCCIQLLMGDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSKYKK 355
Q NK ++LL+G+IPE + F QKG+EK+L PY+ +T AV++GDL LF K+
Sbjct: 278 RIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLD 337
Query: 356 ELVQDSNYQLCVRLRSNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTV---EYMISRA 412
QD + L VRLR NVI+TG+R IS++Y +ISL D+ KL L+SE V E ++++A
Sbjct: 338 TFAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKA 397
Query: 413 IRDGVIEAKINHEEGYIETSELLNVYSTKQPQQVFDERIRFVNHLHSDYVTGMRFP---- 468
IRDG I+A I+H+ G + + E ++YST +PQ F+ RI F ++H++ V +RFP
Sbjct: 398 IRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTH 457
Query: 469 ---DSREEDNSKKLSDESLETTM 488
+S E+ +K +E L M
Sbjct: 458 KEKESDEKRRERKQQEEELAKHM 480
>CE00101 [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 504
Score = 200 bits (508), Expect = 5e-51
Identities = 146/508 (28%), Positives = 250/508 (48%), Gaps = 48/508 (9%)
Query: 4 DAMDIDSVPEAAVDNNSNEDAVVDKLLEILKQVSKSTLSMDSRYVWKSLRDFAALRHDVT 63
+A+ ++++ E + E+ ++ ++L++L + K
Sbjct: 32 NAIAVENIKEQLAALDKGEEHLITRVLQVLPKTRKQI----------------------- 68
Query: 64 VENTSILVNLV---YPDDSSYKKYLLKTIHPTSRPKVENAVKFREEYPASLYQLQQDGTS 120
N ++L LV D+ + + +LK +H T P + V+ + ++
Sbjct: 69 --NDNVLYKLVSSHLSSDAQFAEGMLKYLHYT--PAADTEVQPMDTSNVKTKSPKKGVKP 124
Query: 121 LDVSSEVNSFVHYIVQSLLLDSNRIDELQQFNKTHVIPQVLKQYNNRNLDLINAKIWFYI 180
+ S E + ++ +V L + E + + + ++ R LD + AK +++
Sbjct: 125 VFASPESDCYLRLLVLLHLYAQKKNTEALALGENQLTS--IYNFDRRTLDGLAAKTLYFL 182
Query: 181 NRANELTSTPNDSSLLAEMMQYLKSATLKHDNETKATLITSILRQYLRLGEIELAADFVS 240
E D + L++ATL++ +E++A LI +LR YL + + AA VS
Sbjct: 183 CVIYEREGRLFDHQ--GFLNSRLRTATLRNFSESQAVLICWLLRCYLINRQYQSAAHLVS 240
Query: 241 KVEFPSGDNVSSPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNSLGFLQQAN 300
KV FP DN S+ ARY +Y +I A+QLDY+ + Y + A RKAP + ++GF Q
Sbjct: 241 KVAFP--DNASNNDLARYMYYQGRIKALQLDYNSAAGYFLQAQRKAPQ-EGAIGFKQAVQ 297
Query: 301 KLQCCIQLLMGDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSKYKKELVQD 360
K I LL G+IP+ + F Q K L Y +++ V+ GD+ F +L ++K + D
Sbjct: 298 KWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLEQFKTQFEAD 357
Query: 361 SNYQLCVRLRSNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTVEYMISRAIRDGVIEA 420
L VRLR NVIKT I+ ISL Y +I +KDI KL++ +E EY++++AI DG I+A
Sbjct: 358 DTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITNETETEYIVAKAIADGAIDA 417
Query: 421 KINHE----EGYIETSELLNVYSTKQPQQVFDERIRFVNHLHSDYVTGMRFPDSREEDNS 476
I + Y+++SE ++Y T +PQ FD RIR+ LH+ V +R+P
Sbjct: 418 VITSDVRDGPRYMQSSETADIYRTSEPQAHFDTRIRYCLELHNQAVKALRYPP------K 471
Query: 477 KKLSDESLETTMDLNSMNLSDFDSDLDD 504
KK++ E++E + L +F +L D
Sbjct: 472 KKIAVETIEQAREREQQEL-EFAKELAD 498
>ECU05g1540 [O] KOG2581 26S proteasome regulatory complex subunit RPN3/PSMD3
Length = 376
Score = 75.1 bits (183), Expect = 2e-13
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 31/248 (12%)
Query: 177 WFYINRANELTSTPNDSSLLAEMMQYLKSATLKHDNETKATLITSILRQYLRLGEIELAA 236
+ Y+ R NE D+S L ++ K NE ++IT+ L L +I
Sbjct: 104 FLYLARKNEC----QDNSALFSLLVTNKEL----GNEYTVSVITNCLLDMLIGNKI---- 151
Query: 237 DFVSKVEFPSGDN--VSSPLEARYYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNSLG 294
F DN V++ +ARY +Y I ++ DY + + + + + + LG
Sbjct: 152 -------FQRIDNSIVTTSEQARYNYYNGIIFMVEGDYESALKCFHTCVILSTNRDLVLG 204
Query: 295 FLQQANKLQCCIQLLMGDIPELTFFHQKGLEKSLLPYYHITKAVKLGDLNLFTQSLSKYK 354
A K LL D + + SL Y+ + AVK D+ F ++L K
Sbjct: 205 ----AEKRVILCMLLSSD-----YSIPYPCKPSLRIYFKLASAVKRADIKKFEETLESNK 255
Query: 355 KELVQDSNYQLCVRLRSNVIKTGIRMISLTYKKISLKDICLKLHLDSEQTVEYMISRAIR 414
EL+ Y + RL NVI+ GIR IS+ Y +IS +DI L ++S + VEY++ R IR
Sbjct: 256 DELMSQGLYFVAKRLSQNVIQEGIRKISVVYSRISYEDIAHILGINSGE-VEYLVKRTIR 314
Query: 415 DGVIEAKI 422
G+I+ K+
Sbjct: 315 KGLIKGKV 322
>Hs4502975 [OT] KOG2582 COP9 signalosome subunit CSN3
Length = 403
Score = 51.2 bits (121), Expect = 4e-06
Identities = 36/176 (20%), Positives = 81/176 (45%), Gaps = 5/176 (2%)
Query: 258 YYFYLSKIHAIQLDYSQSHEYVISALRKAPHTKNSLGFLQQANKLQCCIQLLMGDIPELT 317
YY+Y I+ ++ ++ + A+ P S L+ K +L+G + +L
Sbjct: 164 YYYYGGMIYTGLKNFERALYFYEQAIT-TPAMAVSHIMLESYKKYILVSLILLGKVQQLP 222
Query: 318 FFHQKGLEKSLLP----YYHITKAVKLGDLNLFTQSLSKYKKELVQDSNYQLCVRLRSNV 373
+ + + + + P Y+ + + + + ++K+ + +D+N L + S++
Sbjct: 223 KYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSL 282
Query: 374 IKTGIRMISLTYKKISLKDICLKLHLDSEQTVEYMISRAIRDGVIEAKINHEEGYI 429
K I+ ++ T+ +SL+D+ ++ L Q E + I DG I A IN ++G +
Sbjct: 283 YKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMV 338
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,297,102
Number of Sequences: 60738
Number of extensions: 1161162
Number of successful extensions: 3836
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3804
Number of HSP's gapped (non-prelim): 9
length of query: 506
length of database: 30,389,216
effective HSP length: 111
effective length of query: 395
effective length of database: 23,647,298
effective search space: 9340682710
effective search space used: 9340682710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)