ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2892 check: MH A KOG0952 RNA processing and modification DNA/RNA helicase MER3/SLH1, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2892 982040 985300 1087
(1087 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 934 0.0
SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box sup... 309 2e-83
YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 304 6e-82
Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 303 1e-81
7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 303 1e-81
Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 300 8e-81
Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 295 3e-79
At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 292 2e-78
SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 284 6e-76
At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 278 3e-74
ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 269 2e-71
CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 266 1e-70
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 266 2e-70
At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 266 2e-70
CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 263 8e-70
At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 262 2e-69
ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 172 3e-42
Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 138 4e-32
SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-... 131 7e-30
CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 127 7e-29
7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 127 1e-28
7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 124 6e-28
At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 123 1e-27
Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 118 6e-26
CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 115 4e-25
At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 114 6e-25
Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 112 2e-24
CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 112 2e-24
CE24303 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 111 5e-24
7294212 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 107 8e-23
7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 107 1e-22
ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 106 2e-22
YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 104 9e-22
SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD... 99 4e-20
Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 99 5e-20
At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 94 2e-18
ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 91 1e-17
At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 77 1e-13
YDR291w [A] KOG4150 Predicted ATP-dependent RNA helicase 77 2e-13
YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 74 2e-12
SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 D... 67 2e-10
CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 66 3e-10
At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 65 4e-10
CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily 65 8e-10
7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 61 8e-09
ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily 60 2e-08
SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily 54 1e-06
CE26682 [R] KOG0353 ATP-dependent DNA helicase 54 1e-06
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 52 5e-06
>YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1187
Score = 934 bits (2413), Expect = 0.0
Identities = 503/1089 (46%), Positives = 687/1089 (62%), Gaps = 44/1089 (4%)
Query: 32 KKPKIATLQKDPVNEIRLLPVSVLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSP 91
KKPK T++K + L ++LPDS + +F F FN+MQ+E+F +IY SNENCI++SP
Sbjct: 106 KKPKKVTIRKSAK---KCLSTTILPDSFRGVFKFTEFNKMQSEAFPSIYESNENCIISSP 162
Query: 92 TGSGKTVLFELAILNAMNRLDRPSS-VKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTS 150
TGSGKTVLFELAIL + + ++ K++YIAPTKSLC E Y+ W F+ LSVGMLTS
Sbjct: 163 TGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLSVGMLTS 222
Query: 151 DTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLE 210
DTSF E EK K NIII TPEKWD++TR+W+DY + F ++ LVLVDEIH ++E RG++LE
Sbjct: 223 DTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLE 282
Query: 211 VILTRMNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHV 270
VILTRMN+MCQN+R VA+SAT+PNI D+A WLKT +PA +L+FD+SYRQV L V
Sbjct: 283 VILTRMNTMCQNIRFVALSATVPNIEDLALWLKTNNE--LPANILSFDESYRQVQLTKFV 340
Query: 271 YSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNN 330
Y + N+FQ DA++N++L+E+I KH+ +PVLIFCPTR STI TA+ + L++H +
Sbjct: 341 YGYSFNCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFL-LNNHIFSK 399
Query: 331 TSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGV 390
S KR N DK L+E Q+GIAFHHAG+S+ DR+ +E +F G I +LCSTSTLAVGV
Sbjct: 400 -SKKRCNHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGV 458
Query: 391 NLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYEN 450
NLPAYLVIIKGT+ W+ + QEYS LD+LQMIGRAGRPQFET G A+I+TD ++ YEN
Sbjct: 459 NLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYEN 518
Query: 451 LLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRS 510
L+ GT LES LHLNL E++ AE +L ++ SI++A+NWL+NTFFY R+ KNPA Y +
Sbjct: 519 LIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAYQEVNR 578
Query: 511 SILTSDAE-CQLTHFCERTLKDLLSYKIILDNNGNLCASGYGQAMTRHYILGDTVKNIIR 569
+ E Q+ FC+ L L+ KII +NG ++ YG AMTRHYI +++K I
Sbjct: 579 YVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNGEYKSTAYGNAMTRHYISFESMKQFIN 638
Query: 570 SNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSKE 629
+ L +L +LA + EF +R++HNEKKL++EIN +PLL+YPF +KKQ I
Sbjct: 639 AKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLLKYPFLTEKKQSQIIDRVS 698
Query: 630 QKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCFIEKYDGDSL 689
QK+SLLIQYEL GLE+PSY+ A K HQTLVQDK LVFRH R+LKCM+D FIEK DG SL
Sbjct: 699 QKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKCMVDTFIEKSDGTSL 758
Query: 690 KSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCTFADMEKLTEQQIEYYLS 749
K+TLFLLRS+ G WE+TPM+LRQL TIGLVS+R+L+ HG+ +M L++ QIEYYL+
Sbjct: 759 KNTLFLLRSLNGHCWENTPMVLRQLKTIGLVSVRRLIRHGITNLEEMGHLSDTQIEYYLN 818
Query: 750 LRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEVQANFKSASWHGQQLCML 809
L+ GNG KIK+D+ ++P L++ +E + + ++FKVE+ A FKS+ WHGQ L +
Sbjct: 819 LKIGNGIKIKNDISLLPCLNIRTKLENCKIENEELWLTFKVEISATFKSSIWHGQHLSLD 878
Query: 810 IMLKTDTGILIDFRRTFLSKLKTPKAFRITIQVDRNTNFIEFVYSCEQIGGSNREIRYYL 869
I + +G LIDFRR ++KL++P+ FRI+ ++ IEF C++I G + I Y
Sbjct: 879 IETEKSSGELIDFRRLQVNKLQSPRGFRISAKISPKLEKIEFSIHCQEIAGLGKTIVYST 938
Query: 870 SNGCYDDMPKYSNVLEQIDSNQTGSFQTS-----------INYSDARETIXXXXXX---- 914
+ K N+ + ++S + F S +++ D E
Sbjct: 939 DHLASQFSAKTPNIRKDLNSLEKCLFYESSSDGEVGKTSRVSHKDGLEESLSSDDSILDY 998
Query: 915 -----XXXXXXXXXXXXXXXXXXXXXXXCDRSLLDNGNMKCHHTCKDKSTCRHLCCREGI 969
R + NGN +C H+CKDK+ CRHLCC+EGI
Sbjct: 999 LNERKKSSKAVESAAVIHPEAHSSSHFSNGRQVRSNGNYECFHSCKDKTQCRHLCCKEGI 1058
Query: 970 PRNTRRKASKQSMIKHTESVQQEEPSSSKDARN--DLQKGLSSSKSML--PNLDECQQME 1025
P ++ S+ ++ Q +P +K+ L+K L+S N D
Sbjct: 1059 PVKYIKEKGPSSIKPVSKPDQIRQPLLAKNINTTPHLEKRLNSKPKQWQEENTDIATVHT 1118
Query: 1026 PEPVLENPINSLPKVSSAQQTQK---------ITYIIXXXXXXXXXXFDTSLSDTQDADL 1076
+ N + + + +Q K I + +S+SD
Sbjct: 1119 LPSKIYNLSQQMSSMEAGEQVLKSGPENCPEIIPIDLESSDSYSSNTAASSISDPNGD-- 1176
Query: 1077 LNFLGSDIE 1085
L+FLGSDIE
Sbjct: 1177 LDFLGSDIE 1185
>SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1935
Score = 309 bits (791), Expect = 2e-83
Identities = 224/682 (32%), Positives = 349/682 (50%), Gaps = 64/682 (9%)
Query: 23 SNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSAQCIFPFENFNRMQTESFENIYRS 82
SN +T L +P T DPV E C F FN +QT+ F IY +
Sbjct: 1102 SNPITELLDLQPLPITALHDPVLE------------GICAKRFSFFNAVQTQFFHTIYHT 1149
Query: 83 NENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIM 142
+ N V +PTGSGKT+ ELA A++ + KV+YIAP K+L E+ + W + +
Sbjct: 1150 DTNIFVGAPTGSGKTMAAELATWRALHNYPKS---KVVYIAPMKALVKERVKDWGHRLVE 1206
Query: 143 ---LSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIH 199
+S+ LT DT+ +++ V ANIII TPEKWD ITR W ++ +SL+++DEIH
Sbjct: 1207 PMGISMIELTGDTN-PDVKAVTNANIIITTPEKWDGITRSWKSR-KYVQDVSLIILDEIH 1264
Query: 200 ILQEHRGSTLEVILTRMNSMC----QNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVL 255
+L RG LE+I++RMN + + +R++ +S + N +D+A+WL + +
Sbjct: 1265 LLGSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLN------IRDGLF 1318
Query: 256 AFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTI 315
F S R V L ++ F + M N + I HS +PVLIF +R+ T
Sbjct: 1319 NFRHSVRPVPLEIYIDGFPGRAYCPRMMS--MNKPAFQAIKTHSPTQPVLIFVSSRRQTR 1376
Query: 316 VTARHI----ALHDHE-----MNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRS 366
+TA+ + L D+ M+ + +++DK L GIA HHAGL+ DR
Sbjct: 1377 LTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRK 1436
Query: 367 VIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWS--INGSQEYSTLDILQMIGR 424
+ E+ F N +++L +TSTLA GVN PA+LVI+KGT + I G ++ D+LQM+GR
Sbjct: 1437 ISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGR 1496
Query: 425 AGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKS 484
AGRPQF+ G A I + + Y++ L +ES LH L ++ AEIA +I I+
Sbjct: 1497 AGRPQFDNSGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQG 1556
Query: 485 AMNWLKNTFFYRRYLKNPAHYSV---IRSSILTSDAECQLTHFCERTLKDLLSYKIILDN 541
AM++L T+FYRR +NP +Y + SI T ++ +T F E K Y++ N
Sbjct: 1557 AMDFLTCTYFYRRVHQNPVYYGADGDDQKSIDTYLSKLVVTAFNELE-KSACIYRV---N 1612
Query: 542 NGNLCASGYGQAMTRHYILGDTVKNIIRSNTSLKSLEV-LKILANASEFDSIRLKHNEKK 600
+ G+ ++ +Y+ T++N ++ T ++ L++LA ASEFD + ++HNE
Sbjct: 1613 EETYAPTTLGRIVSYYYLFHTTIRNFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDL 1672
Query: 601 LYREINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQ 660
+ EIN + L+Y + + K +L Q ++ L+ P V
Sbjct: 1673 INIEINKS--LKYSAACLN---LPMVDAHVKAFILTQAHMARLKLPV--------DDYVT 1719
Query: 661 DKMLVFRHAPRVLKCMIDCFIE 682
D V R+++ ID E
Sbjct: 1720 DTSTVLDQVIRIIQSYIDVSAE 1741
Score = 271 bits (693), Expect = 4e-72
Identities = 218/811 (26%), Positives = 392/811 (47%), Gaps = 100/811 (12%)
Query: 65 FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN-------AMNRLDRPSSV 117
++ NR+Q+ + Y++NEN ++ +PTG+GKT + LA+L +MN +D +
Sbjct: 275 YQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPL 334
Query: 118 -------KVLYIAPTKSLCNEKYQQWKSKFIMLSVGM--LTSDTSFTELEKVKAANIIIC 168
K++YIAP K+L E ++ + L + LT D T+ E + I++
Sbjct: 335 DVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTE-IAETQILVT 393
Query: 169 TPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNSMC----QNLR 224
TPEKWDV+TRK Q + LV++DE+H+L + RG+ +E ++ R + Q +R
Sbjct: 394 TPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIR 453
Query: 225 IVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYN--KFNNEFQ 282
IV +SAT+PN D+AD+L G+ F ++R + H K N
Sbjct: 454 IVGLSATLPNYLDVADFLGVNRYKGL----FYFSSAFRPCPIEQHFIGAKGSPKIVNSNI 509
Query: 283 MDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIA---LHDHE---MNNTSSKRS 336
+A F+ ++++LI + G V+IF +R+ TI +A+ + H+ E ++N+ ++
Sbjct: 510 DEACFD-KVLKLIQE---GHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKY 565
Query: 337 NI------KLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGV 390
++ K ++K+L E+ + + H+AG+ +DR + E F+ G +K+LC T+TLA GV
Sbjct: 566 SLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGV 625
Query: 391 NLPAYLVIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKY 448
NLPAY V+IKGT+++ + LD+LQ+ GRAGRPQFE+ A I+T Y
Sbjct: 626 NLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHY 685
Query: 449 ENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVI 508
+++ S +ES L +N+ AE++L ++T+I A++WL T+ Y R +NP Y +
Sbjct: 686 ISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIA 745
Query: 509 RSSI----LTSDAECQLTHFCERTLKD--LLSYKIILDNNGNLCASGYGQAMTRHYILGD 562
+ L +L L D ++ Y NG L G+ + +YI
Sbjct: 746 YDELVEDPLLGSKRRELVSVAAGRLADNQMIVYN---KKNGYLIPKDLGRIASNYYINYQ 802
Query: 563 TV---KNIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKK 619
TV N+++S S +++ +L+ SEF I+ + NE + + N +
Sbjct: 803 TVSTLNNLLKSKMS--EADIIALLSQCSEFSQIKSRENEHRELESLMEN-------SSPC 853
Query: 620 KQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDC 679
+ SI++ K+++++Q +S + TL D V ++A R+ + + +
Sbjct: 854 QLRDSISNTSGKVNVILQSYISRAHVEDF--------TLTSDTNYVAQNAGRITRALFEI 905
Query: 680 FIEKYDGDSLKSTLFLLRSVAGKGWE--------DTP--MILRQLNTIGLVSLRKLVSHG 729
+ + S + L L +S+ + W D P + ++ N G +SL +L
Sbjct: 906 AMSR-TWASAFTILSLNKSIDRRQWSFEHPLLQFDLPHDLAVKVENQCGSLSLEELSDMS 964
Query: 730 VCTFADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFK 789
D+ + G +K + +PLL++ +V+ +T+N + +
Sbjct: 965 TGELGDLIHNRKM------------GPTVKKFISKLPLLNI--NVDLLPLTKNVLRLVLN 1010
Query: 790 VEVQANFKSASWHGQQLCMLIMLKTDTGILI 820
+ N+ +HG I ++ G+ I
Sbjct: 1011 ITPNFNW-DMRYHGNSQMFWIFVEDSNGLEI 1040
>YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1967
Score = 304 bits (778), Expect = 6e-82
Identities = 243/788 (30%), Positives = 401/788 (50%), Gaps = 58/788 (7%)
Query: 15 DTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSA-QCIFPFENFNRMQT 73
++T ++F + L RP + TLQ + ++R LP S L + + I+PF+ FN MQT
Sbjct: 1093 ESTHAISFQH-LIRPFNE-----TLQTKLL-KLRPLPTSALQNPLIESIYPFKYFNPMQT 1145
Query: 74 ESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKY 133
+F +Y +NEN V SPTGSGKT++ ELAI +A K++YIAP K+L E+
Sbjct: 1146 MTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFP---GKKIVYIAPMKALVRERV 1202
Query: 134 QQWKSKFIMLS---VGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAIL 190
W+ K ++ V LT D S + + V A I+I TPEK+D I+R W +F +
Sbjct: 1203 DDWRKKITPVTGDKVVELTGD-SLPDPKDVHDATIVITTPEKFDGISRNWQTR-KFVQDV 1260
Query: 191 SLVLVDEIHILQEHRGSTLEVILTRMNSMC----QNLRIVAVSATIPNIHDIADWLKTGG 246
SL+++DEIH+L RG LE+I++RMN + Q +R++ +S + N +D+A WL
Sbjct: 1261 SLIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWL---- 1316
Query: 247 PTGVPAKVLA-FDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVL 305
GV L F S R V L+ ++ F + M + N + I +HS KP L
Sbjct: 1317 --GVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMKTM-NKPVFMAIKQHSPDKPAL 1373
Query: 306 IFCPTRQSTIVTARHIALHDHEMNNTSSKRSNI-----------KLQDKQLSEIAQKGIA 354
IF +R+ T +TA + +H M + + NI ++ D L Q GI
Sbjct: 1374 IFVASRRQTRLTALDL-IHLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLSLQFGIG 1432
Query: 355 FHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWS--INGSQE 412
HHAGL DRS+ F I++L +TSTLA GVNLPA+LVIIKGT+ + I G ++
Sbjct: 1433 LHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRD 1492
Query: 413 YSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVA 472
DILQM+GRAGRP ++T GTA++ T E + Y++ L +ES LH L +++ A
Sbjct: 1493 MDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGA 1552
Query: 473 EIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSILTSDAECQLTHFCERTLKDL 532
EI SIT+ + A+++L TF +RR NP +Y I T+ L+ + TL++L
Sbjct: 1553 EITSGSITNKQEALDFLSWTFLFRRAHHNPTYYG-IEDDTSTAGVSEHLSSLIDSTLENL 1611
Query: 533 LSYKIILDNNGNLCASGYGQAMTRHYILGDTVKNIIRS-NTSLKSLEVLKILANASEFDS 591
+ +L + ++ A+ + + +YI T++ +++ + EVL+ L+ A E++
Sbjct: 1612 RESQCVLLHGDDIVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNE 1671
Query: 592 IRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDA 651
+ ++ E + E++ T + + + K LL+Q LS ++ P
Sbjct: 1672 LPVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPI---- 1727
Query: 652 QKHHQTLVQDKMLVFRHAPRVLKCMIDCFIEKYDGDSLKSTLFLLRSV-AGKGWEDTPMI 710
+QD + V + R+L+ ID E ++ + + +++ + G +ED P
Sbjct: 1728 ----ADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDP-- 1781
Query: 711 LRQLNTIGLVSLRKLVSHGVCTFADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSL 770
++ + + LR++ + +E +Q+ + L+L + K L + L+
Sbjct: 1782 ---VSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGYKKLLNVFDQLTF 1838
Query: 771 EYSVEEKT 778
+ E T
Sbjct: 1839 GMTESEDT 1846
Score = 277 bits (709), Expect = 6e-74
Identities = 182/595 (30%), Positives = 308/595 (51%), Gaps = 43/595 (7%)
Query: 48 RLLPVSVLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNA 107
+LL +S L + +FP+E N++Q+ + Y++NEN ++ +PTG+GKT + L I+N
Sbjct: 268 KLLKISDLDHFCKTVFPYETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINT 327
Query: 108 M---------NRLD-RPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGM--LTSDTSFT 155
+ N +D + KV+Y+AP K+L E ++ K ++ + LT D T
Sbjct: 328 IKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLT 387
Query: 156 ELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR 215
+ E + A +I+ TPEKWDV+TRK + + L+++DE+H+L E RG +E ++ R
Sbjct: 388 KAE-ILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGPVIETLVAR 446
Query: 216 ----MNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVY 271
+ S +RI+ +SAT+PN D+AD+L G+ FD S+R L +
Sbjct: 447 TLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGM----FYFDQSFRPKPLEQQLL 502
Query: 272 SFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARH---IALHDHEM 328
K + + + +L +G V++F +R+ T+ +AR+ +A +HE+
Sbjct: 503 GCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEV 562
Query: 329 N--------NTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVL 380
+ RS +K +DK + EI Q G HHAG++ +DR++ E F +G IKVL
Sbjct: 563 DLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVL 622
Query: 381 CSTSTLAVGVNLPAYLVIIKGTRMWSI--NGSQEYSTLDILQMIGRAGRPQF-ETEGTAL 437
C T+TLA GVNLPA VIIKGT+++ G + D++Q+ GR GRP F GT +
Sbjct: 623 CCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGI 682
Query: 438 ILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRR 497
+ T + Y +L+ +ES L +N+ AEI+L S+T++ A+ WL T+ + R
Sbjct: 683 LCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVR 742
Query: 498 YLKNPAHYSVIRSSILTS----DAECQLTHFCERTLKDLLSYKIILDN-NGNLCASGYGQ 552
KNP Y + I + ++ R L L I+ D + + A G+
Sbjct: 743 MRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHAL--QMIVFDEVSMHFIAKDLGR 800
Query: 553 AMTRHYILGDTVKNIIR-SNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREIN 606
+ Y+L ++V+ + + +VL +++ +SEFD I+ + E K + ++
Sbjct: 801 VSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKELKRLS 855
>Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2136
Score = 303 bits (776), Expect = 1e-81
Identities = 239/823 (29%), Positives = 412/823 (50%), Gaps = 71/823 (8%)
Query: 45 NEIRLLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELA 103
+E +LLPV LP AQ F F+ NR+Q++ + ++EN ++ +PTG+GKT + +
Sbjct: 457 SEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMC 516
Query: 104 ILNAMNR---LDRPSSV---KVLYIAPTKSLCNEKYQQWKSKFIM--LSVGMLTSDTSFT 155
+L + + +D +V K++YIAP +SL E + + ++V LT D
Sbjct: 517 MLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLC 576
Query: 156 ELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR 215
+ E++ A II+CTPEKWD+ITRK + + ++ L+++DEIH+L + RG LE ++ R
Sbjct: 577 K-EEISATQIIVCTPEKWDIITRKGGERT-YTQLVRLIILDEIHLLHDDRGPVLEALVAR 634
Query: 216 ----MNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLA-FDDSYRQVVLRH-H 269
+ +++R++ +SAT+PN D+A +L+ PAK L FD+S+R V L +
Sbjct: 635 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVD-----PAKGLFYFDNSFRPVPLEQTY 689
Query: 270 VYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIA------- 322
V K FQ + N + E I +H+ VL+F +R+ T TAR I
Sbjct: 690 VGITEKKAIKRFQ---IMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKD 746
Query: 323 -----LHDHEMNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDI 377
L + + + + ++ +L ++ G A HHAG++ DR+++ED F + I
Sbjct: 747 TLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHI 806
Query: 378 KVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGT 435
+VL ST+TLA GVNLPA+ VIIKGT+++S + E LDILQM+GRAGRPQ++T+G
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 866
Query: 436 ALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFY 495
+++T G + Y +LL +ES + L + + AEI L ++ + K A+NWL + Y
Sbjct: 867 GILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLY 926
Query: 496 RRYLKNPAHYSV----IRSSILTSDAECQLTHFCERTL--KDLLSYKIILDNNGNLCASG 549
R L++P Y + ++ L L H L +L+ Y GN +
Sbjct: 927 IRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYD---KKTGNFQVTE 983
Query: 550 YGQAMTRHYILGDTVKNIIR-SNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINAN 608
G+ + +YI DTV+ + +L +E+ ++ + +SEF +I ++ EK +++
Sbjct: 984 LGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKL--- 1040
Query: 609 PLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRH 668
L R P K+ SI KI++L+Q +S L+ + L+ D + V +
Sbjct: 1041 -LERVPIPVKE----SIEEPSAKINVLLQAFISQLKLEGF--------ALMADMVYVTQS 1087
Query: 669 APRVLKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSH 728
A R+++ + + + + TL L + + + W+ + LRQ + ++K+
Sbjct: 1088 AGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQ-SMCPLRQFRKLPEEVVKKIEKK 1146
Query: 729 GVCTFADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSF 788
F + L +I + + P G I + + P LE SV + +T++ + V
Sbjct: 1147 NF-PFERLYDLNHNEIGELIRM-PKMGKTIHKYVHLFP--KLELSVHLQPITRSTLKVEL 1202
Query: 789 KVEVQANFKSASWHGQQLCMLIMLKTDTGILIDFRRTFLSKLK 831
+ + HG I+++ +I FL K K
Sbjct: 1203 TITPDFQW-DEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAK 1244
Score = 271 bits (693), Expect = 4e-72
Identities = 238/879 (27%), Positives = 416/879 (47%), Gaps = 83/879 (9%)
Query: 46 EIRLLPVSVLPDSA-----QCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLF 100
+++ LPVS L +SA Q FPF FN +QT+ F +Y S++N V +PTGSGKT+
Sbjct: 1303 DLQPLPVSALRNSAFESLYQDKFPF--FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICA 1360
Query: 101 ELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKF---IMLSVGMLTSDTSFTEL 157
E AIL L + S + +YI P ++L + Y W KF + V +LT +TS T+L
Sbjct: 1361 EFAILRM---LLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS-TDL 1416
Query: 158 EKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMN 217
+ + NIII TPEKWD+++R+W I +L +VDE+H++ G LEVI +RM
Sbjct: 1417 KLLGKGNIIISTPEKWDILSRRWKQRKNVQNI-NLFVVDEVHLIGGENGPVLEVICSRMR 1475
Query: 218 SMCQNL----RIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSF 273
+ + RIVA+S+++ N D+A WL + F + R V L H+ F
Sbjct: 1476 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS-----TFNFHPNVRPVPLELHIQGF 1530
Query: 274 YNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTA------------RHI 321
N + + ++ ++ + I KHS KPV++F P+R+ T +TA R
Sbjct: 1531 -NISHTQTRLLSMAKP-VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR 1588
Query: 322 ALHDHEMNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLC 381
LH E + KL D L E G+ + H GLS +R ++E F++G I+V+
Sbjct: 1589 FLHCTEKDLIPYLE---KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1645
Query: 382 STSTLAVGVNLPAYLVIIKGTRMWS--INGSQEYSTLDILQMIGRAGRPQFETEGTALIL 439
++ +L G+N+ A+LVII T+ ++ I+ +Y D+LQM+G A RP + EG +I+
Sbjct: 1646 ASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
Query: 440 TDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYL 499
++ ++ L +ES L + ++ AEI +I + + A+++L TF YRR
Sbjct: 1706 CQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMT 1765
Query: 500 KNPAHYSVIRSSILTSDAECQLTHFCERTLKDLLSYKII-LDNNGNLCASGYGQAMTRHY 558
+NP +Y++ I L+ E+TL DL K I +++ ++ G +Y
Sbjct: 1766 QNPNYYNL--QGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYY 1823
Query: 559 ILGDTVKNIIRS-NTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTD 617
I T++ S N K +++I++NA+E+++I ++H+E L R++
Sbjct: 1824 INYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK-------VP 1876
Query: 618 KKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMI 677
K K +LL+Q LS ++ + L D + A R+++ +
Sbjct: 1877 HKLNNPKFNDPHVKTNLLLQAHLSRMQLSA---------ELQSDTEEILSKAIRLIQACV 1927
Query: 678 DCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCTFADME 737
D + + L + V W L+QL +++ GV + D+
Sbjct: 1928 DVLSSNGWLSPALAAMELAQMVTQAMW-SKDSYLKQLPHFTSEHIKRCTDKGVESVFDIM 1986
Query: 738 KLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEVQANFK 797
++ +++ L L + P + L Y V +K ++ V V+++ +
Sbjct: 1987 EMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLE---R 2043
Query: 798 SASWHGQQLCMLIMLKTDTG---ILIDFRRTFLSKLKTPKAFRITIQVDRNTNFIEFVYS 854
G + L K + G ++ D + L +K R+T+Q ++FV
Sbjct: 2044 EEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIK-----RLTLQQKAKVK-LDFVAP 2097
Query: 855 CEQIGGSNREIRYYLSN---GCYDDMPKYSNVLEQIDSN 890
G++ Y++S+ GC D K+S +++ +++
Sbjct: 2098 AT---GAHNYTLYFMSDAYMGC-DQEYKFSVDVKEAETD 2132
>7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1809
Score = 303 bits (775), Expect = 1e-81
Identities = 221/728 (30%), Positives = 375/728 (51%), Gaps = 70/728 (9%)
Query: 7 ISSSNTSNDTT-FQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSA-QCIFP 64
+SS N TT L+F + L P P L +R LPVS L + + ++
Sbjct: 907 VSSDNWLGSTTCIPLSFQH-LVLPEHHPPLTELLP------LRPLPVSCLKNVVYESLYK 959
Query: 65 FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAP 124
F +FN +QT+ F +Y ++ N ++ +PTGSGKT++ E+AI A+N+ + KV+YIAP
Sbjct: 960 FTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPK---CKVVYIAP 1016
Query: 125 TKSLCNEKYQQWKSKFIMLSVGM----LTSDTSFTELEKVKAANIIICTPEKWDVITRKW 180
K+L E+ W+ +F S+G+ LT D + +++ ++ + +I+ TPEKWD I+R W
Sbjct: 1017 LKALVKERIADWEQRFQRSSLGLKVVELTGDVT-PDIQAIRESQLIVTTPEKWDGISRSW 1075
Query: 181 TDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNSMCQN----LRIVAVSATIPNIH 236
++ +SL+++DEIH+L E RG +EVI++R N + + +RIV +S + N
Sbjct: 1076 QTR-EYVQHVSLIVIDEIHLLGEDRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQ 1134
Query: 237 DIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELIN 296
D+A+WL + F S R V L+ H+ F K + A N + I
Sbjct: 1135 DLANWLGIN-----KMGLYNFKPSVRPVPLQVHINGFPGK--HYCPRMATMNRPTFQAIR 1187
Query: 297 KHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIKLQDKQLSEIAQK----- 351
+S +P ++F +R+ T +TA + + S+ + + + + ++ I Q
Sbjct: 1188 TYSPCEPTIVFVSSRRQTRLTALDLITF---VAGESNPKQFLHIPEDEIELILQNIREQN 1244
Query: 352 -------GIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRM 404
GI HHAGL DR +E+ F N I++L +T+TLA GVNLPA+LV+IKGT
Sbjct: 1245 LKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEY 1304
Query: 405 WS--INGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCL 462
+ + + D+LQM+GRAGRPQF+ EG A++L + + Y+ L +ES L
Sbjct: 1305 FDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSL 1364
Query: 463 HLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSILTSDAECQLT 522
L E+I AEI ++ S ++A+++L T+F+RR L+NP++Y + I + ++
Sbjct: 1365 LGVLPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQL--QDIEPENVNNFMS 1422
Query: 523 HFCERTLKDLLSYKIILDNNGNLCASGYGQAMTRHYILGDTVKNIIRS-NTSLKSLEVLK 581
+ ER + +L + +++ +G L + G+ + +Y+ T+K+ + + + +VL
Sbjct: 1423 NLVERVVYELSAAACLVERDGCLIPTFLGRISSYYYLSYRTMKHFLEDLQPGMNTKKVLL 1482
Query: 582 ILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELS 641
+A++ EFD + ++HNE K E+ R P + S S K LL+Q +
Sbjct: 1483 AIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSS-------SWDSSYTKTFLLLQAHFA 1535
Query: 642 GLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCFIEKYDGDSLKSTLF---LLRS 698
P + + D +A RV++ M+D E+ L +TL L++S
Sbjct: 1536 RQSLP--------NSDYLTDTKSALDNATRVMQAMVDYTAER---GWLSTTLVVQQLMQS 1584
Query: 699 VAGKGWED 706
V W D
Sbjct: 1585 VIQARWFD 1592
Score = 261 bits (668), Expect = 3e-69
Identities = 208/763 (27%), Positives = 364/763 (47%), Gaps = 63/763 (8%)
Query: 66 ENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMN-----RLDRPSSVKVL 120
+ NR+Q+ F Y SNEN +V +PTG+GKT + L+I++ + + K++
Sbjct: 111 KELNRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLEQGVINRDEFKIV 170
Query: 121 YIAPTKSLCNEKYQQWKS--KFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITR 178
YIAP K+L E + K + ++V LT D T+ E + A I++ TPEKWDV+TR
Sbjct: 171 YIAPMKALAAEMVDNFSKRLKSLQIAVRELTGDIQLTKAE-MAATQILVTTPEKWDVVTR 229
Query: 179 KWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNSMCQN----LRIVAVSATIPN 234
K + +++ L+++DE+H+L RG +E ++ R + ++ +RIV +SAT+PN
Sbjct: 230 KGSGDVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPN 289
Query: 235 IHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYN--KFNNEFQMDALFNTRLV 292
D+A +L+ G+ FD +R V L + + + MD + V
Sbjct: 290 YIDVAHFLRVNPMKGL----FYFDSRFRPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCV 345
Query: 293 ELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSS-------------KRSNIK 339
E++ + G +++F R +T+ TA ++ + NNTS+ RS +
Sbjct: 346 EMVQE---GHQIMVFVHARNATVRTA-NVIRELAQQNNTSALFLPKDSAAHGLATRSIQR 401
Query: 340 LQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVII 399
++KQL E+ G+A HHAG+ DR ++E F G I VL T+TLA GVNLPA+ VII
Sbjct: 402 SRNKQLVELFSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVII 461
Query: 400 KGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTST 457
+GT ++ + LD+LQ+ GRAGRPQF+ G I+T Y +LL
Sbjct: 462 RGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFP 521
Query: 458 LESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSI---LT 514
+ES LA+N+ AEI L +IT++ A+ WL T+ + R NP Y + S + T
Sbjct: 522 IESNFVNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVYGIEYSELEKDPT 581
Query: 515 SDAECQLTHFCERTLKDLLSYKIILDNNGNLCASGYGQAMTRHYILGDTVKNIIR-SNTS 573
+A + D ++ + G+ + YI DTV+
Sbjct: 582 LEARRRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFNELMKPF 641
Query: 574 LKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSKEQKIS 633
+ E+L +++ A EF ++++ +E + E+ P+ + + K++
Sbjct: 642 MTQAEILAMISQAQEFQQLKVRDDEMEELDELKNAYCKIKPYGGSE-------NVHGKVN 694
Query: 634 LLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCFIEKYDGDSLKSTL 693
+LIQ LS S+ +L D + + R+ + + + + + + L
Sbjct: 695 ILIQTYLSNGYVKSF--------SLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNML 746
Query: 694 FLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCTFADMEKLTEQQIEYYLSLRPG 753
L + + W D L+Q TI ++ KL G+ + + + ++++ +L
Sbjct: 747 QLCKMFERRQW-DFDCHLKQFPTINAETIDKLERRGLSVYR-LRDMEHRELKEWLRSNTY 804
Query: 754 NGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEVQANF 796
I+S +PLL +E S++ +T+ + + KV++ +F
Sbjct: 805 ADLVIRS-AHELPLLEVEASLQ--PITRTVLRI--KVDIWPSF 842
>Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1866
Score = 300 bits (768), Expect = 8e-81
Identities = 228/684 (33%), Positives = 355/684 (51%), Gaps = 64/684 (9%)
Query: 20 LNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSA-QCIFPFENFNRMQTESFEN 78
+NF + L P R P L P LP++ L A + ++ F +FN +QT+ F
Sbjct: 949 INFQH-LILPERHPPHTELLDLQP------LPITALGCKAYEALYNFSHFNPVQTQIFHT 1001
Query: 79 IYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKS 138
+Y ++ N ++ +PTGSGKTV ELAI N+ P+S K +YIAP K+L E+ WK
Sbjct: 1002 LYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKY--PTS-KAVYIAPLKALVRERMDDWKV 1058
Query: 139 KF---IMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLV 195
+ + V LT D + +++ + A++I+ TPEKWD ++R W + + ++++++
Sbjct: 1059 RIEEKLGKKVIELTGDVT-PDMKSIAKADLIVTTPEKWDGVSRSWQNR-NYVQQVTILII 1116
Query: 196 DEIHILQEHRGSTLEVILTRMNSMCQN----LRIVAVSATIPNIHDIADWLKTGGPTGVP 251
DEIH+L E RG LEVI++R N + + +RIV +S + N D+ADWL
Sbjct: 1117 DEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-----Q 1171
Query: 252 AKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTR 311
+ F S R V L H+ F + + A N + I HS KPVLIF +R
Sbjct: 1172 MGLFNFRPSVRPVPLEVHIQGFPGQ--HYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSR 1229
Query: 312 QSTIVTARHIA--LHDHE-----MNNTSSKRSNI--KLQDKQLSEIAQKGIAFHHAGLSM 362
+ T +TA + L E +N + NI ++D L GI HHAGL
Sbjct: 1230 RQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHE 1289
Query: 363 TDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQ--EYSTLDILQ 420
DR +E+ F N ++VL +TSTLA GVN PA+LVIIKGT + + ++ D+LQ
Sbjct: 1290 RDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQ 1349
Query: 421 MIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSIT 480
M+GRAGRPQF+ +G A+IL + ++ Y+ L +ES L L++++ AEIA +IT
Sbjct: 1350 MMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTIT 1409
Query: 481 SIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSILTSDAECQLTHFCERTLKDL-LSYKI-I 538
S + A++++ T+F+RR + NP++Y++ + L+H E++L +L LSY I I
Sbjct: 1410 SKQDALDYITWTYFFRRLIMNPSYYNL--GDVSHDSVNKFLSHLIEKSLIELELSYCIEI 1467
Query: 539 LDNNGNLCASGYGQAMTRHYILGDTVKNI-IRSNTSLKSLEVLKILANASEFDSIRLKHN 597
++N ++ YG+ + +Y+ TVK R + E+L IL++A E+ + ++HN
Sbjct: 1468 GEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHN 1527
Query: 598 EKKLYREI-NANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSG--LEYPSYKDAQKH 654
E + E+ P+ P S S K LL+Q LS L P Y
Sbjct: 1528 EDHMNSELAKCLPIESNPH--------SFDSPHTKAHLLLQAHLSRAMLPCPDYD----- 1574
Query: 655 HQTLVQDKMLVFRHAPRVLKCMID 678
D V A RV + M+D
Sbjct: 1575 -----TDTKTVLDQALRVCQAMLD 1593
Score = 266 bits (679), Expect = 2e-70
Identities = 218/781 (27%), Positives = 380/781 (47%), Gaps = 86/781 (11%)
Query: 66 ENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNR-----LDRPSSVKVL 120
+ NR+Q+ FE Y +NEN ++ +PTG+GKT + L +L+ + + + + + K++
Sbjct: 139 KRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIV 198
Query: 121 YIAPTKSLCNEKYQQWKSKFIMLSVGM--LTSDTSFTELEKVKAANIIICTPEKWDVITR 178
Y+AP K+L E + + L + + LT D ++ E ++ +++ TPEKWDV+TR
Sbjct: 199 YVAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRT-QMLVTTPEKWDVVTR 257
Query: 179 KWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR----MNSMCQNLRIVAVSATIPN 234
K I+ L+++DE+H+L E RG LE I+ R + S +RI+ +SAT+PN
Sbjct: 258 KSVGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPN 317
Query: 235 IHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFY--NKFNNEFQMDALFNTRLV 292
D+A +L G+ FD +R V L NK MD + ++
Sbjct: 318 YLDVATFLHVNPYIGL----FFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVL 373
Query: 293 ELINKHSKGKPVLIFCPTRQSTIVTAR----------HIAL------HDHEMNNTSSKRS 336
+ + G V++F R +T+ TA HI HD+ + +RS
Sbjct: 374 KQVKA---GHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRS 430
Query: 337 NIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYL 396
++KQ+ E+ G + HHAG+ DR+++E+ F+NG IKVL T+TLA GVNLPA+
Sbjct: 431 ----RNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHA 486
Query: 397 VIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKG 454
VIIKGT++++ + LD++Q+ GRAGRPQF+ G +I+T Y LL
Sbjct: 487 VIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQ 546
Query: 455 TSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSS--- 511
+ +ES +LA+N+ AEIAL ++T+++ A+ W+ T+ Y R NP Y + +
Sbjct: 547 RNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQI 606
Query: 512 --ILTSDAECQLTHFCERTLKDLLSYKIILDNNGNLCASGYGQAMTRHYILGDTVKNIIR 569
L E QL R L D + G ++ G+ + +YI +T++
Sbjct: 607 DPTLRKHRE-QLVIEVGRKL-DKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNE 664
Query: 570 SNTSLKSL-EVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSK 628
+ K+ ++ I++ A EFD I+++ E + + +N F + + +
Sbjct: 665 LFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSN------FCELSTP-GGVENS 717
Query: 629 EQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCFIEKYDGDS 688
KI++L+Q +S E S+ +L+ D V ++A R+++ + + + K +
Sbjct: 718 YGKINILLQTYISRGEMDSF--------SLISDSAYVAQNAARIVRALFEIALRK-RWPT 768
Query: 689 LKSTLFLLRSVAGK---GWEDTPMILRQLNTIGLVSLRKLVSH--GVCTFADMEKLTEQQ 743
+ L L V K GW LRQ + + L +L V DM K
Sbjct: 769 MTYRLLNLSKVIDKRLWGWASP---LRQFSILPPHILTRLEEKKLTVDKLKDMRKDEIGH 825
Query: 744 IEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEVQANFKSASWHG 803
I +++++ G K+K + IP + +E S++ +T+ + V+ + + +W+
Sbjct: 826 ILHHVNI----GLKVKQCVHQIPSVMMEASIQ--PITRTVLRVTLSI-----YADFTWND 874
Query: 804 Q 804
Q
Sbjct: 875 Q 875
>Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 731
Score = 295 bits (755), Expect = 3e-79
Identities = 171/402 (42%), Positives = 253/402 (62%), Gaps = 27/402 (6%)
Query: 83 NENCIVTSPTGSGKTVLFELAILNAMNRLDRP-SSVKVLYIAPTKSLCNEKYQQWKSKF- 140
+ N ++ +PTGSGKTV+FELAI + + P ++K++Y+AP K+LC++++ WK KF
Sbjct: 313 DRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFG 372
Query: 141 -IMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIH 199
I L+ LT DT +L +++ A+II+ TPEKWD +TRKW D ++ L L+DE+H
Sbjct: 373 PIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDN-SLVQLVRLFLIDEVH 431
Query: 200 ILQ-EHRGSTLEVILTRMN---SMCQNL---------RIVAVSATIPNIHDIADWLKTGG 246
I++ E+RG TLEV+++RM S+ Q L R VAVSATIPN DIA+WL G
Sbjct: 432 IVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGE 491
Query: 247 PTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNN-EFQMDALFNTRLVELINKHSKGKPVL 305
PA L D+S+R V L+ V F N EF+ D N ++ +I +S KP L
Sbjct: 492 R---PAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTL 548
Query: 306 IFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIK-----LQDKQLSEIAQKGIAFHHAGL 360
+FC TR+ + A + + D + T ++ ++ ++D +L +I + G A+HHAG+
Sbjct: 549 VFCATRKG-VQQAASVLVKDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGM 607
Query: 361 SMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQ 420
++DR V+E FT GD+ VL +TSTLA+GVNLPA+LV+IK T ++ +EYS DILQ
Sbjct: 608 ELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQ 667
Query: 421 MIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCL 462
MIGRAGRPQF+T TA+I+T +++KY +L T+ES +
Sbjct: 668 MIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSM 709
>At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1113
Score = 292 bits (748), Expect = 2e-78
Identities = 228/764 (29%), Positives = 376/764 (48%), Gaps = 72/764 (9%)
Query: 49 LLPVSVLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAM 108
L VS LP + + F F FN +Q+E F + S+ N I+++PTGSGKTVLFEL IL
Sbjct: 6 LKSVSDLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLF 65
Query: 109 NR--------LDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGML--TSDTSFTELE 158
++ L ++K +YI+P+K+L EK + W KF + L T D +
Sbjct: 66 SKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYSTK 125
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQ--FFAILSLVLVDEIHILQEHRGSTLEVILTRM 216
++ A+II+ TPEK+D ++R FF+ ++LVL+DE+H+L + RG+ LE I++R+
Sbjct: 126 NIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSRL 185
Query: 217 NSMCQN----------LRIVAVSATIPNIHDIADWLKTGGPT-GVPAKVLA-------FD 258
+ N +R++AVSATIPNI D+A+WLK PT G+ + ++ F
Sbjct: 186 KILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKV--PTAGIKSFIIVYLPMFYRFG 243
Query: 259 DSYRQVVLRHHVYSF-YNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVT 317
+ R V L V+ Y N+F + +++ +++L ++ + L Q+ +
Sbjct: 244 EEMRPVKLTTKVFGTGYAAAKNDFLFEKVYSFCILDLDSRAQEAAQKLA-----QTAMTY 298
Query: 318 ARHIALHDHEMNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDI 377
+ ++ DKQ+ +G G R++ E ++ +
Sbjct: 299 GYSNPFIKSREQLERLREASPMCSDKQMQSYILQG------GPQPRRRALPEWRYPS--- 349
Query: 378 KVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTAL 437
L + Y K W++ I+ + RAGRP F+ G +
Sbjct: 350 -YLHDQHSCPWNQPACTYSATRKKVTTWNM----------IVPLYYRAGRPPFDDTGMVI 398
Query: 438 ILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRR 497
I+T + YENLL G +ES L L E++ AEI +I+ I A+ W+K ++ Y R
Sbjct: 399 IMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVR 458
Query: 498 YLKNPAHYSVIRSSILTSDAECQLTHFCERTLKDLLSYKII-LDNNG-NLCASGYGQAMT 555
KNP +Y+ I+ I E L C + + +L Y++I D +G L G+ MT
Sbjct: 459 MKKNPENYA-IKKGIPKDRVEKHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPGRLMT 517
Query: 556 RHYILGDTVKNIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANP--LLRY 613
++Y+ +T+K II + TS E L I+ +A E I+L+ NEKK ++NA+ LR+
Sbjct: 518 KYYLKFETMKYIINTPTSYSLDEALHIVCHAEEISWIQLRRNEKKTLNDVNADKEGRLRF 577
Query: 614 PFTDKK-KQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRV 672
D K K+ I ++E+K+ +L L+G D H ++ QD + + R+
Sbjct: 578 HINDNKGKRKKRIQTREEKLFVLANDWLTG-------DPSVHDLSMTQDANSICSNGSRI 630
Query: 673 LKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCT 732
+CM + FI K + S+ L +S+ K W+D+P +L+QL IG+V+ + L S GV +
Sbjct: 631 ARCMKEYFIYKKNYKGTLSSTLLAKSLYQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRS 690
Query: 733 FADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEE 776
F + + ++IE + G IK L +P +E VEE
Sbjct: 691 FEALAEADPRRIEIVTGRKYPFGNTIKESLSSLP-PKVEIKVEE 733
>SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2176
Score = 284 bits (726), Expect = 6e-76
Identities = 230/822 (27%), Positives = 399/822 (47%), Gaps = 79/822 (9%)
Query: 48 RLLPVSVLPD-SAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN 106
RL+ + LP+ S Q ++ NR+Q+ + + ++EN ++ +PTG+GKT + L ILN
Sbjct: 499 RLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILN 558
Query: 107 AMNRLDRPS------SVKVLYIAPTKSLCNEKYQQWKSKFIM--LSVGMLTSDTSFTELE 158
+ + R + K++YIAP K+L E + + + V LT D+ T+ +
Sbjct: 559 ELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTK-Q 617
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRM-- 216
++ II+ TPEKWD+ITRK D + ++ LV++DE+H+L + RG LE I+ R+
Sbjct: 618 QISETQIIVTTPEKWDIITRKANDL-SYVNLVRLVIIDEVHLLHDERGPVLESIVARIFR 676
Query: 217 --NSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFY 274
+ +R+V +SAT+PN D+A +L G+ FD +YR L+
Sbjct: 677 HQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGL----FYFDSTYRPCPLKQEFIGIT 732
Query: 275 NKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHI---ALHD----HE 327
K F+ N E + +H+ VLIF +R+ T TAR I AL + H
Sbjct: 733 EK--TPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIGHL 790
Query: 328 MNNTSSKRSNIKLQ-----DKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCS 382
+ + ++ R ++ + D+ L ++ G A HHAG+ DR ED F +G I+VL S
Sbjct: 791 LRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVS 850
Query: 383 TSTLAVGVNLPAYLVIIKGTRMWSINGS--QEYSTLDILQMIGRAGRPQFETEGTALILT 440
T+TLA GVNLPA+ VIIKGT+++S E S D+LQM+GRAGRPQF+T G +I+T
Sbjct: 851 TATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIIT 910
Query: 441 DEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLK 500
+ Y +L+ +ES LA+ + AE++L ++ SI+ ++WL T+ Y R L+
Sbjct: 911 AHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLR 970
Query: 501 NPAHYSVIRSSILTSDAECQLTHFCERTLKDLL-SYKIILD---------NNGNLCASGY 550
+PA YSV E + + DLL S I+L+ +G L A+
Sbjct: 971 SPALYSV--------GPEYDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATEL 1022
Query: 551 GQAMTRHYILGDTV---KNIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINA 607
G+ +Y+ +++ ++ TS +E+ ++ + + EF I ++ EK ++
Sbjct: 1023 GKVAASYYVTHNSMAIYNRLLMQTTSF--IELFRVFSFSDEFKHIPVREEEKVELAKL-- 1078
Query: 608 NPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFR 667
L R P +++ + KI+ L+Q +S + LV D + V +
Sbjct: 1079 --LERVPIPIRER----LDEPAAKINALLQSYISRQRLDGF--------ALVADMVYVTQ 1124
Query: 668 HAPRVLKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVS 727
A R+++ + + + + +L + + + W T LRQ +R+ V
Sbjct: 1125 SAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLW-PTMSPLRQFPNCPSEVIRR-VE 1182
Query: 728 HGVCTFADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVS 787
+ L ++ + + P G ++ + +Q P LS+E V+ +T++ + V
Sbjct: 1183 KKEFPWQRYFDLDPAELGELVGV-PKEGRRVYNMVQSFPRLSVEAHVQ--PITRSLVRVE 1239
Query: 788 FKVEVQANFKSASWHGQQLCMLIMLKTDTGILIDFRRTFLSK 829
+ Q N+ + +++ D L+ + + FL K
Sbjct: 1240 LVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLK 1281
Score = 197 bits (502), Expect = 6e-50
Identities = 155/593 (26%), Positives = 296/593 (49%), Gaps = 49/593 (8%)
Query: 43 PVNEIRLLPVSVLPD-SAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLF 100
P+ +++ PVS L + S ++P F+ FN++QT+ F ++Y++N++ + +P GSGKTV
Sbjct: 1338 PLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCA 1397
Query: 101 ELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVG----MLTSDTSFTE 156
ELA+L+ ++ D ++V YIAP + + + +Y++W KF L G LT + S +
Sbjct: 1398 ELALLHHWSQEDYGTAV---YIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERS-QD 1453
Query: 157 LEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRM 216
L+ ++ A++I CTP +WD ++++W + + DE+ +L G E++++R+
Sbjct: 1454 LKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKV-DFYICDELQLLGGFYGPLYEIVISRI 1512
Query: 217 NSMC----QNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYS 272
M +N+R+V +S ++ N D+ +WL T P + F R L H+ S
Sbjct: 1513 RYMAVQLEKNIRVVGLSVSVANARDLGEWLGTS-----PQCIFNFSPKDRPNPLTIHLQS 1567
Query: 273 FYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQ-----STIVTARHIALHDHE 327
F + + M A+ L N S+ K ++F P R+ + + +A D
Sbjct: 1568 F-SITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEY 1626
Query: 328 MNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLA 387
+ + + K++D L + + GIA+ S D+++++ + +G IKVL ++ +
Sbjct: 1627 LFSLMENEAFNKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVI 1686
Query: 388 VGVNLPAYLVIIKGTRMWSINGSQ----EYSTLDILQMIGRAGRPQFETEGTALILTDEG 443
+ + VI+ GT+ + +G + +Y ++LQM+G +++T
Sbjct: 1687 YSLKAKSNAVIVMGTQYY--DGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTT 1744
Query: 444 SQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPA 503
+E Y+ L +ES L + L + V+EI+ +I S + A++WL ++ YRR + NPA
Sbjct: 1745 KKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPA 1804
Query: 504 HYSVIRSSILTSDAECQLTHFCERTLKDLLSYKII-LDNNGNLC--------ASGYGQAM 554
+Y + I L+ E T+ DL ++I +D+ + C AS YG
Sbjct: 1805 YYGL--QDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGIT- 1861
Query: 555 TRHYILGDTVKNIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINA 607
YI T + T +K L L+I+ +A+E++ + ++ E + I++
Sbjct: 1862 ---YITMQTFALSLSERTKMKGL--LEIVTSAAEYEQLPIRKYEDIVLERIHS 1909
>At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2172
Score = 278 bits (712), Expect = 3e-74
Identities = 212/701 (30%), Positives = 360/701 (51%), Gaps = 70/701 (9%)
Query: 48 RLLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN 106
+L+ +S LP+ AQ F + NR+Q++ + +N ++ +PTG+GKT + L IL+
Sbjct: 485 KLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILH 544
Query: 107 AMNRLDRPSSV------KVLYIAPTKSLCNEKYQQWKSKF--IMLSVGMLTSDTSFTELE 158
+ P K++Y+AP K+L E + ++V L+ D S T E
Sbjct: 545 QLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQE 604
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR--- 215
+K II+ TPEKWD+ITRK D + ++ L+++DEIH+L ++RG LE I+ R
Sbjct: 605 -IKETQIIVTTPEKWDIITRKSGDRT-YTQLVRLLIIDEIHLLDDNRGPVLESIVARTLR 662
Query: 216 -MNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVL-RHHVYSF 273
+ S +++R+V +SAT+PN D+A +L+ G+ FD SYR V L + ++
Sbjct: 663 QIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGL----FIFDRSYRPVPLGQQYIGIN 718
Query: 274 YNKFNNEFQ-MDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNT- 331
K FQ M+ + ++V + KH VLIF +R+ T TAR A+ D M N
Sbjct: 719 VKKPLRRFQLMNDICYQKVVAVAGKHQ----VLIFVHSRKETAKTAR--AIRDTAMANDT 772
Query: 332 --------SSKRSNIK-----LQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIK 378
S R +K L++ L E+ G A HHAGL+ TDR ++E++F G+++
Sbjct: 773 LSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQ 832
Query: 379 VLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTA 436
VL ST+TLA GVNLPA+ VIIKGT++++ + E S LD++QMIGRAGRPQ++ +G
Sbjct: 833 VLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEG 892
Query: 437 LILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYR 496
+I+T + Y L+ +ES LA+ + AEI L +I + + A +WL T+ Y
Sbjct: 893 IIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYV 952
Query: 497 RYLKNPAHYSV----IRSSILTSDAECQLTHFCERTL--KDLLSYKIILDNNGNLCASGY 550
R ++NP Y V + +L + L H L +L+ Y +G+ +
Sbjct: 953 RMVRNPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYD---RKSGHFQVTDL 1009
Query: 551 GQAMTRHYILGDTVKNIIRS-NTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANP 609
G+ + +YI T+ + ++ +E+ ++ + + EF + ++ +EK ++
Sbjct: 1010 GRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKL---- 1065
Query: 610 LLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHA 669
L R P K+ ++ KI++L+Q +S L+ +L D + + + A
Sbjct: 1066 LDRVPIPVKE----TLEDPSAKINVLLQVYISKLKLEGL--------SLTSDMVYITQSA 1113
Query: 670 PRVLKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWE-DTPM 709
R+L+ + + +++ + L L + V + W TP+
Sbjct: 1114 GRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPL 1154
Score = 268 bits (686), Expect = 3e-71
Identities = 199/660 (30%), Positives = 336/660 (50%), Gaps = 58/660 (8%)
Query: 46 EIRLLPVSVL--PDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELA 103
+++ LPV L P F++FN +QT+ F +Y +++N +V +PTGSGKT+ E A
Sbjct: 1328 DLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFA 1387
Query: 104 ILNAMNRLDRP-SSVKVLYIAPTKSLCNEKYQQWKSKF---IMLSVGMLTSDTSFTELEK 159
IL N L+ P S+++V+YIAP +++ E+++ W+ KF + L V LT +T +L+
Sbjct: 1388 ILR--NHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGET-LLDLKL 1444
Query: 160 VKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRM--- 216
++ III TPEKWD ++R+W ++ +SL +VDE+H++ G LEVI++RM
Sbjct: 1445 LEKGQIIISTPEKWDALSRRWKQR-KYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMRYI 1503
Query: 217 -NSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYN 275
+ + +RIVA+S ++ N D+ +W+ V F + R V L H++ +
Sbjct: 1504 SSQVGNKIRIVALSTSLANAKDLGEWIGASS-----CGVFNFPPNVRPVPLEIHIHGV-D 1557
Query: 276 KFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSS-- 333
+ E +M A+ ++ KP ++F PTR+ +TA + + H M+N S
Sbjct: 1558 ILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSH-MDNMKSPD 1616
Query: 334 ---------KRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTS 384
+ I++ ++ L E + GI + H GLS D+ ++ F G I+V +S
Sbjct: 1617 FLLGNLEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSS 1676
Query: 385 TLAVGVNLPAYLVIIKGTRMWS--INGSQEYSTLDILQMIGRAGRPQFETEGTALILTDE 442
+L G L A+LV++ GT + N +Y ++LQM+GR RP + G +I
Sbjct: 1677 SLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHA 1736
Query: 443 GSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNP 502
+E Y+ L +ES L L +N AE+ I + + A+++L +F YRR +NP
Sbjct: 1737 PRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNP 1796
Query: 503 AHYSVIRSSILTSDAECQLTHFCERTLKDL-LSYKIILDNNGNLCASGYGQAMTRHYILG 561
+Y+++ + L+ E TL DL +S I +DN +L G + +YI
Sbjct: 1797 NYYNLL--GVSHRHLSDHLSELVENTLSDLEVSKCIEIDNELDLSPLNLGMIASYYYINY 1854
Query: 562 DTVK---NIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDK 618
T++ +++ S T +K L L+IL +ASE+D I ++ E+ R + + R+ F +
Sbjct: 1855 TTIERFSSLLASKTKMKGL--LEILTSASEYDLIPIRPGEEDAVRRLINHQ--RFSFQNP 1910
Query: 619 KKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMID 678
+ T K S L+Q S QK LV D+ V A R+L+ M+D
Sbjct: 1911 R-----CTDPRVKTSALLQAHFS---------RQKISGNLVMDQCEVLLSATRLLQAMVD 1956
>ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1058
Score = 269 bits (687), Expect = 2e-71
Identities = 192/591 (32%), Positives = 314/591 (52%), Gaps = 49/591 (8%)
Query: 68 FNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKS 127
FN +Q+ F+ YRS+ N +V +PTGSGKT + L IL A+ + D KV+Y+ P ++
Sbjct: 106 FNAVQSRVFKPAYRSDGNMLVCAPTGSGKTDVALLCILRALKKGD-----KVVYVVPMRA 160
Query: 128 LCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFF 187
L E ++K K V T DT E V ++++ TPEK+DV TR+ + F
Sbjct: 161 LATEIALKYKKKLGGHRVVEYTGDTE-AGAEDVMRCDVVVSTPEKFDVATRR--QHSVFQ 217
Query: 188 AILSLVLVDEIHILQEHRGSTLEVILTRMNSMCQN----LRIVAVSATIPNIHDIADWLK 243
+ LV++DEIH+LQ+ RG +E I+ R+ + +RIV +SAT+PN D+ +L+
Sbjct: 218 GRIGLVVLDEIHMLQDDRGPVVETIVCRVLRHVELGQRLIRIVGLSATLPNYEDVGRFLR 277
Query: 244 TGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKP 303
V +FD YR V L+ V K + + D L ++ E + S GK
Sbjct: 278 A-------EHVFSFDQGYRPVPLKMSVIGMKRKSKPQLE-DELLQEKVREYL---SNGKQ 326
Query: 304 VLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIKLQDKQ--LSEIAQKGIAFHHAGLS 361
VL+F +R TI AR + +R N+K L E+ ++G+ HHAGL
Sbjct: 327 VLVFVHSRGDTIRIARLLG--------DEGERRNVKAGTVTGALLELVRRGVGVHHAGLP 378
Query: 362 MTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMW--SINGSQEYSTLDIL 419
R +ED+F ++VL +TSTLA GVNLPAY VIIKGTR + S G + LD+L
Sbjct: 379 RRIRLYMEDEFKRRGVRVLVTTSTLAWGVNLPAYAVIIKGTRFYDSSKGGFADVGILDVL 438
Query: 420 QMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSI 479
Q+ GRAGRPQF++ G ++T + Y +LLK + +ES L ++A+ + AEI L +I
Sbjct: 439 QIFGRAGRPQFDSRGEGCLITTGDKMDYYVSLLKNSRDVESRLLQHVADVMNAEIYLGTI 498
Query: 480 TSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSILTSDAECQLTHF----CERTLKDLLSY 535
+ +A+ WLK+TF Y R KNP +Y + R + D E L+ + C R L++
Sbjct: 499 EDVSTAVEWLKSTFMYVRMSKNPMYYGLSREDLY--DEERALSDYGILTCRR-LEECGMV 555
Query: 536 KIILDNNGN-----LCASGYGQAMTRHYILGDTVKNIIRSNTSLKSLE-VLKILANASEF 589
+I G+ C++ YG+ + +Y+ +T++ + ++ + +L++ A E
Sbjct: 556 RIYRQVAGDSRTWRFCSTEYGRVASMYYLSHETMEKWLEDIGNVYDEDSILRLCFEAREL 615
Query: 590 DSIRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYEL 640
++R + +++ +E+ + ++Y + + K LM++ K + ++ L
Sbjct: 616 SALRCRDEDEESIKELCEDLGIKYEVSVECK-LMALVKAHIKRHPVTRFSL 665
>CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1798
Score = 266 bits (680), Expect = 1e-70
Identities = 187/602 (31%), Positives = 320/602 (53%), Gaps = 57/602 (9%)
Query: 46 EIRLLPVSVLPDSA-QCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAI 104
++ LP+ L +S + I+ F+ FN +Q + F +Y+++++ ++ +PTGSGKT+ ELA+
Sbjct: 938 DLEPLPIKTLKNSKFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAM 997
Query: 105 LNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKF-------IMLSVGMLTSDTSFTEL 157
+ D P +KV+YIAP KSL E+ WK KF ++ G +T D
Sbjct: 998 FRLLQ--DHPG-MKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDP----- 1049
Query: 158 EKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMN 217
E++ A++I+I TPEKWD I+R W ++ + L+++DE+H+L RG+ LE I++R+
Sbjct: 1050 EELAASSILITTPEKWDGISRSWATR-EYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLK 1108
Query: 218 SMCQN-------LRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLA-FDDSYRQVVLRHH 269
+ + +R++ +S + N D+A+WL G+P + F S R V + H
Sbjct: 1109 MITRRSHVTEEPVRLLGLSTALANAGDVAEWL------GIPDEACYNFRPSVRPVPISVH 1162
Query: 270 VYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTAR---HIALHDH 326
+ F + + L N + I +S KPVLIF +R+ T +TA ++ + DH
Sbjct: 1163 IQGFPGQ--HYCPRMGLMNKPAYKAILTYSPRKPVLIFVSSRRQTRLTALAFVNLLIADH 1220
Query: 327 E------MNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVL 380
M+ + ++D+ L GI HHAGLS +R+++E F I+VL
Sbjct: 1221 NPKQWLNMDMLELEDLMAAIKDENLKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVL 1280
Query: 381 CSTSTLAVGVNLPAYLVIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTALI 438
+T+TLA G+N PA+LVI+KGT + + ++ D+LQM+GRAGRPQF+ A+I
Sbjct: 1281 IATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVI 1340
Query: 439 LTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRY 498
+ + Y+ L +ES L L ++ AEI+ +I S ++ + +L T+ YRR
Sbjct: 1341 YVQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQAIVEYLSKTYLYRRL 1400
Query: 499 LKNPAHYSVIRSSILTSDAECQLTHFCERTLKD-----LLSYKIILDNNGNLC-ASGYGQ 552
NP +Y L D+E + F + + D L S I +D+ ++ + G+
Sbjct: 1401 FANPNYYG------LEEDSEEAMLKFITKIVDDSVAELLASECIHVDSEQDVIKPTPCGR 1454
Query: 553 AMTRHYILGDTVKNIIRSNTSLKSLE-VLKILANASEFDSIRLKHNEKKLYREINANPLL 611
+ +Y+ +TV+ +++S S S+E +LKIL + E+ I ++HNE + E+ +
Sbjct: 1455 IASVYYLQHETVRFLVKSLHSGCSVENMLKILTDVPEYAEIPVRHNEDLINTELQKKLRI 1514
Query: 612 RY 613
R+
Sbjct: 1515 RF 1516
Score = 260 bits (665), Expect = 7e-69
Identities = 205/810 (25%), Positives = 380/810 (46%), Gaps = 65/810 (8%)
Query: 65 FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRP------SSVK 118
FE N +Q+ FE Y++ EN ++ +PTG+GKT + L ILN ++ K
Sbjct: 90 FEKLNVIQSIVFEQAYKTKENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFK 149
Query: 119 VLYIAPTKSLCNEKYQQWKSKF--IMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVI 176
++YIAP K+L E + + + + L V LT DT + E V +++ TPEKWDVI
Sbjct: 150 IIYIAPMKALATEMTESFGKRLAPLGLKVKELTGDTQLSRNE-VADTQMLVLTPEKWDVI 208
Query: 177 TRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNSMCQ----NLRIVAVSATI 232
TRK T ++ L+++DE+H+L + RG +E ++ R + +RIV +SAT+
Sbjct: 209 TRKSTSDNSLINVVRLLIIDEVHLLHDERGPVIETLVARTLRQVEMSQSGIRIVGLSATL 268
Query: 233 PNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLV 292
PN D+A +L+ G+ FD +R V L N + + N
Sbjct: 269 PNFIDVARFLRVNPYKGL----FFFDGRFRPVPLTQKFIGTRKAGNFRDNLTLMDNVCYD 324
Query: 293 ELINKHSKGKPVLIFCPTRQSTI-----VTARHIALHDHEM----NNTSSK------RSN 337
E+++ +G VL+F TR T AR L ++ + SSK N
Sbjct: 325 EVVDFVKRGHQVLVFVHTRNGTAKLGEAFCARASVLGQMDLFLPKDRASSKYIQADKAIN 384
Query: 338 IKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLV 397
I Q+S + Q+G+ HHAGL DR ++E F G + VL T+TLA GVNLPA+ V
Sbjct: 385 ICRNRAQISPLFQRGMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAV 444
Query: 398 IIKGTRMWSINGS--QEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGT 455
+IKGT ++ + LD+ Q+ GRAGRPQFE EG +I+T +KY +L
Sbjct: 445 VIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQ 504
Query: 456 STLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSI-LT 514
+ +ES + L +N+ AE+AL +++++ + WL T+ Y R LKNP Y + ++I
Sbjct: 505 NPIESQFYARLHDNLNAEVALGTVSTVDEGVEWLTYTYMYTRALKNPMAYGIAYNAIERD 564
Query: 515 SDAECQLTHFCERTLKDLLSYKIILDNNGN--LCASGYGQAMTRHYILGDTVKNI----- 567
+ + L K+I + L ++ G+ + Y+ +T++ +
Sbjct: 565 PNLRDHFGNVIREAAMQLDQNKMIRFDMATEYLNSTDLGRIASNFYVKYETIQLLNEAEK 624
Query: 568 -----IRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKKQL 622
+ + + V+ +++ ++EF +++ + E E+ + + +
Sbjct: 625 GVGLPVTFTSFMPDDMVIGLISMSTEFANLKCREEEIGDLEELMSYGCM------MNVRG 678
Query: 623 MSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCFIE 682
+ S K+++L+Q +S + L+ +++ V ++A R+ + M + ++
Sbjct: 679 GGLASVAGKVNVLLQSLIS--------RTSTRNSALMSEQLYVQQNAGRLCRAMFEMVLK 730
Query: 683 KYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGL-VSLRKLVSHGVCTFADMEKLTE 741
+ + L + + V + W + + + + I + ++ + + +D+ +L+
Sbjct: 731 NGWSQAANAFLGIAKCVEKQMWMNQCALRQFIQIINIPITWIEKIERKKARESDLLELSA 790
Query: 742 QQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEVQANFKSASW 801
+ + Y S +G ++ + L+ +P + ++ + T T + V+ N +
Sbjct: 791 KDLGYMFSC---DGDRLYTYLRYLPRMDVQAKFKPITYTIVQVEVTLTPTFIWNDQIHGK 847
Query: 802 HGQQLCMLIMLKTDTGILIDFRRTFLSKLK 831
GQQ L++ + ++I R + K+K
Sbjct: 848 SGQQSFYLVLENLNENLIIHQERIGIGKMK 877
>YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2163
Score = 266 bits (679), Expect = 2e-70
Identities = 228/819 (27%), Positives = 412/819 (49%), Gaps = 85/819 (10%)
Query: 43 PVNEIRLLPVSVLPDSAQCIFPFE---NFNRMQTESFENIYRSNENCIVTSPTGSGKTVL 99
PV + L ++ LPD Q FP + N +Q++ F + + N ++ +PTGSGKT +
Sbjct: 471 PVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNI 530
Query: 100 FELAILNAMNRLDRP-------SSVKVLYIAPTKSLCNEKYQQWKSK--FIMLSVGMLTS 150
L +L A++ P S+ K++YIAP K+L E+ ++++ + F+ + V LT
Sbjct: 531 ALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIKVAELTG 590
Query: 151 DTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLE 210
D+ + +++ +++ TPEKWD+ TR + ++ L+++DEIH+L + RG LE
Sbjct: 591 DSRLSR-KQIDETQVLVSTPEKWDITTRNSNNLA-IVELVRLLIIDEIHLLHDDRGPVLE 648
Query: 211 VILTRM---NSMCQNL-RIVAVSATIPNIHDIADWLKTGGPTGVPAKVLA-FDDSYRQVV 265
I+ R + Q RI+ +SAT+PN D+ +L+ VP + L FD S+R
Sbjct: 649 SIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLR------VPKEGLFYFDSSFRPCP 702
Query: 266 LRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIA--- 322
L + N+ ++ A+ + +++ ++G +++F +R+ T TA +
Sbjct: 703 LSQQFCGIKER-NSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKF 761
Query: 323 -----LHDHEMNNTSSKR----SNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFT 373
H N+ SK+ + D L ++ + GI HHAGL+ +DRS+ ED F
Sbjct: 762 AEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFA 821
Query: 374 NGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSIN-GS-QEYSTLDILQMIGRAGRPQFE 431
+G ++VL T+TLA GVNLPA+ VIIKGT ++S GS ++ S D+LQM+GRAGRP+++
Sbjct: 822 DGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYD 881
Query: 432 TEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKN 491
T G +I+TD+ + + Y ++L +ES L +N+ AE+ +I A+NWL
Sbjct: 882 TFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAY 941
Query: 492 TFFYRRYLKNPAHYSV-----------IRSSILTSDAECQLTHFCERTLKDLLSYKIILD 540
T+ Y R L +P Y V R S++ S A C L E L D + I
Sbjct: 942 TYLYVRMLASPMLYKVPDISSDGQLKKFRESLVHS-ALCILKE-QELVLYDAENDVIEAT 999
Query: 541 NNGNLCASGYGQAMTRHYILGDTVKNIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKK 600
+ GN+ +S Y ++ D + +T+ +++ +I + + EF + +++ EK+
Sbjct: 1000 DLGNIASSFY-----INHASMDVYNRELDEHTT--QIDLFRIFSMSEEFKYVSVRYEEKR 1052
Query: 601 LYREINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQ 660
+++ L + P ++ I K+++L+Q S L++ + L
Sbjct: 1053 ELKQL----LEKAPIPIRE----DIDDPLAKVNVLLQSYFSQLKFEGF--------ALNS 1096
Query: 661 DKMLVFRHAPRVLKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLV 720
D + + ++A R+L+ M + +++ G + L L +S K W T LRQ T +
Sbjct: 1097 DIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMW-PTNCPLRQFKTCPVE 1155
Query: 721 SLRKLVSHGVCTFADMEKLTEQQIEYYLSLRPGN-GYKIKSDLQMIPLLSLEYSVEEKTV 779
+++L + V + D +L E E ++R G ++ L+ P +S+ + + +
Sbjct: 1156 VIKRLEASTV-PWGDYLQL-ETPAEVGRAIRSEKYGKQVYDLLKRFPKMSV--TCNAQPI 1211
Query: 780 TQNAIHVSFKVEVQANF-KSASWHGQQLCMLIMLKTDTG 817
T++ + F +E+ A++ + HG L+ML+ G
Sbjct: 1212 TRSVMR--FNIEIIADWIWDMNVHGSLEPFLLMLEDTDG 1248
Score = 152 bits (385), Expect = 2e-36
Identities = 178/754 (23%), Positives = 333/754 (43%), Gaps = 79/754 (10%)
Query: 62 IFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLY 121
+F F+ FN++Q++ FE++Y SN++ V S G+GKT + ELA+LN R + + +Y
Sbjct: 1342 VFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHW----RQNKGRAVY 1397
Query: 122 IAPTKSLCNEKYQQWKSKFIMLS----VGMLTSDTSFTELEKVKAANIIICTPEKWDVIT 177
I P+ + W +F L+ + L +D S L+ + +++++ TP ++++++
Sbjct: 1398 INPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSL-NLKLLAKSHVLLATPVQFELLS 1456
Query: 178 RKWTDYPQFFAILSLVLVDEIH-ILQEHRGSTLEVILTRM----NSMCQNLRIVAVSATI 232
R+W + L L++ D+ H I Q G+ E +++RM + + +R V +S +
Sbjct: 1457 RRWRQRKNIQS-LELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCL 1515
Query: 233 PNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDAL---FNT 289
N D +W G T + + F S R L ++ SF + + F L F
Sbjct: 1516 ANARDFGEW---AGMT--KSNIYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQMAFEA 1570
Query: 290 RLVELINKHSKGKPVLIFCPTRQSTIVTA----RHIALHDHEMNNTSSKR---SNIKLQD 342
N++S +F P+R+ + A + + +M N ++ KL D
Sbjct: 1571 SAAAAGNRNSSS----VFLPSRKDCMEVASAFMKFSKAIEWDMLNVEEEQIVPYIEKLTD 1626
Query: 343 KQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGT 402
L + G+ + G++ D +++ + G + VL + + VII GT
Sbjct: 1627 GHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEVIILGT 1685
Query: 403 RMWSINGSQE----YSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTL 458
++ +G++ Y+ ++L+M+G A G LILT + Y+ L
Sbjct: 1686 NLY--DGAEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMKAYYKKFLIEPLPT 1742
Query: 459 ESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSILTSDAE 518
ES L + + + EIA + I S + ++W ++FYRR NP++Y V +S
Sbjct: 1743 ESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTS--PHGIS 1800
Query: 519 CQLTHFCERTLKDLL--SYKIILDNNGNLCASGYG--------------QAMTRHY-ILG 561
L++ E L DL+ S+ I D + A G + HY +
Sbjct: 1801 VFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSF 1860
Query: 562 DTVKNIIRSNTSLKSLE-VLKILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKK 620
T+++ + S ++ +L+ +L +L+ A EF+S+ L+ ++ L +++ LR+P
Sbjct: 1861 FTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFP------ 1914
Query: 621 QLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCF 680
+ S S K+ LL+Q S LE P D Q D + ++ ++D
Sbjct: 1915 EHTSSGSVSFKVFLLLQAYFSRLELP--VDFQ-------NDLKDILEKVVPLINVVVD-- 1963
Query: 681 IEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCTFADMEKLT 740
I +G +T L + +G D LRQ+ L K V T D+ L
Sbjct: 1964 ILSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALE 2023
Query: 741 EQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSV 774
+++ + L+L ++ + + P + L YS+
Sbjct: 2024 DEERDEILTLTDSQLAQVAAFVNNYPNVELTYSL 2057
>At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 2137
Score = 266 bits (679), Expect = 2e-70
Identities = 201/694 (28%), Positives = 346/694 (48%), Gaps = 59/694 (8%)
Query: 34 PKIATLQKDPVNEIRLLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPT 92
P T Q P +L+ + L D AQ F +++ NR+Q+ F+ +Y +NEN +V +PT
Sbjct: 475 PPTPTAQMKPGE--KLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPT 532
Query: 93 GSGKTVLFELAILNAMNRLDRP-----SSVKVLYIAPTKSLCNEKYQQWKSKFIMLS--V 145
G+GKT + +++L+ + + R + K++Y+AP K+L E + + L+ V
Sbjct: 533 GAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVV 592
Query: 146 GMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHR 205
LT D T+ E ++ +I+ TPEKWDVITRK +D ++ L+++DE+H+L + R
Sbjct: 593 KELTGDMQLTKTE-LEETQMIVTTPEKWDVITRKSSDMSMSM-LVKLLIIDEVHLLNDDR 650
Query: 206 GSTLEVILTR----MNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSY 261
G+ +E ++ R + S +RIV +SAT+P+ +A +L+ TG+ FD SY
Sbjct: 651 GAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGL----FYFDSSY 706
Query: 262 RQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTA--- 318
R V L Y + N + + L ++++ +G +IF +R+ T TA
Sbjct: 707 RPVPLAQQ-YIGITEHNFAARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKL 765
Query: 319 ----RHIALHDHEMNNTSS-----KRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIE 369
R D N T K+ +K ++K L + + G HHAG+ +DR++ E
Sbjct: 766 VDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTE 825
Query: 370 DKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSIN--GSQEYSTLDILQMIGRAGR 427
F++G +KVL T+TLA GVNLPA+ V+IKGT+++ G ++ LD++Q+ GRAGR
Sbjct: 826 RLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGR 885
Query: 428 PQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMN 487
PQF+ G +I+T Y LL +ES +L +N+ AE+ L ++T++K A
Sbjct: 886 PQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACA 945
Query: 488 WLKNTFFYRRYLKNPAHYSVIRSSILTSDA----ECQLTHFCERTLKDLLSYKIILDNNG 543
WL T+ R NP Y + I+ + + L R+L D + +G
Sbjct: 946 WLGYTYLSIRMKLNPLAYGIGWEEIIADPSLSLKQRALVADAARSL-DKAKMMRFDEKSG 1004
Query: 544 NLCASGYGQAMTRHYILGDTVKNIIRS-NTSLKSLEVLKILANASEFDSIRLKHNEKKLY 602
N + G+ + YI +V+ + E++ ++A++SEF++I ++ E+
Sbjct: 1005 NFYCTELGRVASHFYIQYSSVETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQ--- 1061
Query: 603 REINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDK 662
E+ P K ++K KIS+LIQ +S ++ +LV D
Sbjct: 1062 HELETLARSCCPLEVKG----GPSNKHGKISILIQLYISRGSIDAF--------SLVSDA 1109
Query: 663 MLVFRHAPRVLKCMIDCFIEKYDGDSLKSTLFLL 696
+ R+++ + + + K + TLF+L
Sbjct: 1110 SYISASLARIMRALFEICLRK---GWCEMTLFML 1140
Score = 264 bits (674), Expect = 6e-70
Identities = 234/824 (28%), Positives = 376/824 (45%), Gaps = 120/824 (14%)
Query: 5 YEISSSNTSNDTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSA-QCIF 63
+ +S S +T F ++F N L P + L P LPV+ L + + ++
Sbjct: 1288 HAVSDSWLHAETYFTISFHN-LALPEARTSHTELLDLKP------LPVTSLGNKLYESLY 1340
Query: 64 PFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIA 123
F +FN +QT+ F +Y ++ N +V +PTGSGKT+ ELA+L + +KV+YIA
Sbjct: 1341 KFSHFNPIQTQIFHVLYHTDNNVLVGAPTGSGKTISAELAMLRLFS---TQPDMKVVYIA 1397
Query: 124 PTKSLCNEKYQQWKSKFIM-LSVGMLTSDTSFT-ELEKVKAANIIICTPEKWDVITRKWT 181
P K++ E+ WK + L M+ +T +L + +A+III TPEKWD I+R W
Sbjct: 1398 PLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNW- 1456
Query: 182 DYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMN-SMCQNLRIVAVSATIPNIHDIAD 240
+ + LV++DEIH+L RG LE+ N SM + + + N D+AD
Sbjct: 1457 HTRSYVKKVGLVILDEIHLLGADRGPILELYHDTCNVSMVLVKSLYLFGSALANAGDLAD 1516
Query: 241 WLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSK 300
WL G + F S R V + H+ + K+ +M+++ N I HS
Sbjct: 1517 WLGVG-----EIGLFNFKPSVRPVPIEVHIQGYPGKYYCP-RMNSM-NKPAYAAICTHSP 1569
Query: 301 GKPVLIFCPTRQSTIVTA----RHIALHDHEMNNTSSKRSNI-----KLQDKQLSEIAQK 351
KPVLIF +R+ T +TA + A +H S ++ ++ D+ L Q
Sbjct: 1570 TKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEEDLQMVLSQITDQNLRHTLQF 1629
Query: 352 GIAFHHAGLSMTDRSVIEDKFTNGDI--------------------------------KV 379
GI HHAGL+ DRS +E+ FTN I +V
Sbjct: 1630 GIGLHHAGLNDHDRSAVEELFTNNKIQAISSTYSLCCLYRIHGYTFTLRLMMESMLPLQV 1689
Query: 380 LCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTAL 437
L STSTLA GVNLPA+LVIIKGT + + ++ +ILQM+GRAGRPQF+ G A+
Sbjct: 1690 LVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAV 1749
Query: 438 ILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRR 497
IL E + Y+ L +ES L L ++ AEI +I + + A+++L T+ +RR
Sbjct: 1750 ILVHEPKKSFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRR 1809
Query: 498 YLKNPAHYSVIRSSILTSDAECQ-LTHFCERTLKDLLSYKIILDNNGNLCASGYGQAMTR 556
+ NPA+Y + + + C L+ + T +DL + N ++ + G ++
Sbjct: 1810 LMANPAYYGLEGTQ---DETICSYLSRLVQTTFEDLEDSGCLKVNEDSVEPTMLGTIASQ 1866
Query: 557 HYILGDTVK---NIIRSNTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPLLRY 613
+Y+ TV + I +TSL++ L ILA ASE+D + ++HNE+ + ++ +RY
Sbjct: 1867 YYLCYMTVSMFGSNIGPDTSLEAF--LHILAGASEYDELPVRHNEENYNKTLSDR--VRY 1922
Query: 614 PFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVL 673
P + + K +LL Q
Sbjct: 1923 PVDNN-----HLDDPHVKANLLFQ------------------------------------ 1941
Query: 674 KCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCTF 733
MID S + + LL+ V W D L + + + L L + G+ T
Sbjct: 1942 -AMIDICANSGWLSSSLTCMRLLQMVMQGMWSDQDSSLWMIPCMNDLLLGSLTARGIHTL 2000
Query: 734 ADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEK 777
+ L + ++ P + ++ DLQ P + + +++K
Sbjct: 2001 HQLLNLPRETLQSVTENFPAS--RLSQDLQRFPRIQMNVRLQKK 2042
>CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2145
Score = 263 bits (673), Expect = 8e-70
Identities = 227/819 (27%), Positives = 395/819 (47%), Gaps = 70/819 (8%)
Query: 48 RLLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN 106
+L+ VS LP AQ F +++ NR+Q+ ++ RS E+ ++ +PTG+GKT + L +L
Sbjct: 454 KLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQ 513
Query: 107 AM-NRLDRPSSVK-----VLYIAPTKSLCNEKYQQWKSKFIM--LSVGMLTSDTSFTELE 158
+ N L SVK ++YIAP KSL E + + ++VG +T D ++ E
Sbjct: 514 EIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSK-E 572
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR-MN 217
+ A +I+CTPEK+DV+TRK + + ++ L+++DEIH+L + RG LE I+ R +
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKGGERA-YNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIR 631
Query: 218 SMCQN---LRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFY 274
M QN R+V +SAT+PN D+A +L+ P + FD+SYR V L
Sbjct: 632 QMEQNHDECRLVGLSATLPNYQDVATFLRVK-----PEHLHFFDNSYRPVPLEQQYIGVT 686
Query: 275 NKFNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHE------- 327
K + N + + I +H+ VL+F +R+ T TA+ I E
Sbjct: 687 EK--KALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAF 744
Query: 328 MNNTSSKRSNIKLQDKQ-----LSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCS 382
M S+ ++ + +Q L ++ G A HHAG++ DR+++ED F + I+VL S
Sbjct: 745 MREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFS 804
Query: 383 TSTLAVGVNLPAYLVIIKGTRMWSINGSQ--EYSTLDILQMIGRAGRPQFETEGTALILT 440
T+TLA GVNLPA+ VIIKGT++++ + E LDI+QM+GRAGRPQ++ G +++T
Sbjct: 805 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILIT 864
Query: 441 DEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLK 500
+ + Y +L+ +ES + L + + AE+ L +++S+ A NWL TF + R LK
Sbjct: 865 NHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLK 924
Query: 501 NPAHYSV----IRSSILTSDAECQLTHFCERTL--KDLLSYKIILDNNGNLCASGYGQAM 554
NP Y + R+ L L H L L+ Y +G + A+ G+
Sbjct: 925 NPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYD---KRSGIIQATELGRIA 981
Query: 555 TRHYILGDTVKNIIRSNT-SLKSLEVLKILANASEFDSIRLKHNEK-KLYREINANPLLR 612
+ Y ++++ + + +++ +I + +SEF + ++ EK +L + P+
Sbjct: 982 SHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI-- 1039
Query: 613 YPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRV 672
P + ++ K ++L+Q +S L+ + L D + V + A R+
Sbjct: 1040 -PIKE------NLDEASAKTNVLLQAYISQLKLEGF--------ALQADMVFVAQSAGRL 1084
Query: 673 LKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWEDTPMILRQLNTIGLVSLRKLVSHGVCT 732
+ + + + + + L L + V + W L Q I +R + +
Sbjct: 1085 FRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNP-LHQFKKIPSEVVRSIDKKNY-S 1142
Query: 733 FADMEKLTEQQIEYYLSLRPGNGYKIKSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEV 792
F + L + Q+ + + P G + ++ P L + ++ T T I ++ +
Sbjct: 1143 FDRLYDLDQHQLGDLIKM-PKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDF 1201
Query: 793 QANFKSASWHGQQLCMLIMLKTDTGILIDFRRTFLSKLK 831
+ + K HG I ++ G I FL K K
Sbjct: 1202 KWDEKV---HGSAEGFWIFIEDTDGEKILHHEFFLLKQK 1237
Score = 207 bits (526), Expect = 9e-53
Identities = 173/668 (25%), Positives = 320/668 (47%), Gaps = 71/668 (10%)
Query: 46 EIRLLPVSVLPDSA-QCIFP---FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFE 101
+++ LP+S + + Q +F F+ FN +QT+ F ++ SNEN IV +P GSGKT + E
Sbjct: 1296 DLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAE 1355
Query: 102 LAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKF---IMLSVGMLTSDTSFTELE 158
LA+L + K +YI P + + + Y WK + I ++ +LT + + +L+
Sbjct: 1356 LAVLR---HFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM-DLK 1411
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNS 218
+ +II TPE+WD I+R+W + L + D++H++ G+ EV+ +R
Sbjct: 1412 LAQRGQLIISTPERWDNISRRWKQRKSVQNV-KLFIADDLHMIGASNGAVFEVVCSRTRY 1470
Query: 219 MCQNL----RIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFY 274
+ L R+VA+S+++ N D+ WL + F S R V L + SF
Sbjct: 1471 ISSQLESAVRVVALSSSLTNARDLGMWLGCSA-----SATFNFMPSTRPVPLDLEIKSF- 1524
Query: 275 NKFNNEFQMDALFNTRLVELINKHS---KGKPVLIFCPTRQSTIVTA------------- 318
N +N + A+ + + I +H+ + KP L+F P R+ T A
Sbjct: 1525 NLSHNASRFAAM-ERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAP 1583
Query: 319 -RHIALHDHEMNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDI 377
R + L +H+ + + ++D+ L E G+ F H G + D +++ F + I
Sbjct: 1584 KRFLRLAEHD---DTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAI 1640
Query: 378 KVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGS----QEYSTLDILQMIGRAGRPQFETE 433
+V + + + AYLV++ T+ + NG ++Y D+L M+G A RP +++
Sbjct: 1641 QVCVVPRGMCYQIEMSAYLVVVMDTQFY--NGKYHVYEDYPIADMLHMVGLANRPILDSD 1698
Query: 434 GTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTF 493
+++ + Y+ L +ES L L ++ AEI +I + + A+++L T
Sbjct: 1699 AKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTL 1758
Query: 494 FYRRYLKNPAHYSVIRSSIL-TSDAECQLTHFCERTLKDLLSYK-IILDNNGNLCASGYG 551
YRR +NP +Y++ ++ SDA L+ E TLKDL + K I + + + + G
Sbjct: 1759 LYRRMTQNPNYYNLQGTTHRHLSDA---LSELVELTLKDLENSKCIAVKDEMDTVSLNLG 1815
Query: 552 QAMTRHYILGDTVKNIIRS-NTSLKSLEVLKILANASEFDSIRLKHNEKKLYREINANPL 610
+ +YI T++ S K+ +++I++ +SEF ++ ++H E + R++
Sbjct: 1816 MIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAE--- 1872
Query: 611 LRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLVFRHAP 670
R P K ++ T K++LLI LS ++ + L +D L+ A
Sbjct: 1873 -RLPGQLKNQK---FTDPHVKVNLLIHAHLSRVKLTA---------ELNKDTELIVLRAC 1919
Query: 671 RVLKCMID 678
R+++ +D
Sbjct: 1920 RLVQACVD 1927
>At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2171
Score = 262 bits (669), Expect = 2e-69
Identities = 231/900 (25%), Positives = 413/900 (45%), Gaps = 77/900 (8%)
Query: 7 ISSSNTSNDTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVL--PDSAQCIFP 64
+S ++T ++F + L P + P L P LPV+ L P+
Sbjct: 1295 VSDKWLGSETVLPVSFRH-LILPEKYPPPTELLDLQP------LPVTALRNPNYEILYQD 1347
Query: 65 FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRP-SSVKVLYIA 123
F++FN +QT+ F +Y +N+N +V +PTGSGKT+ E AIL N + P ++++V+YIA
Sbjct: 1348 FKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILR--NHHEGPDATMRVVYIA 1405
Query: 124 PTKSLCNEKYQQWKSKF---IMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKW 180
P +++ E+++ W+ KF + L V LT +T+ +L+ ++ III TPEKWD ++R+W
Sbjct: 1406 PLEAIAKEQFRIWEGKFGKGLGLRVVELTGETAL-DLKLLEKGQIIISTPEKWDALSRRW 1464
Query: 181 TDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRM----NSMCQNLRIVAVSATIPNIH 236
++ +SL +VDE+H++ G LEVI++RM + + +RIVA+S ++ N
Sbjct: 1465 KQR-KYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISSQVINKIRIVALSTSLANAK 1523
Query: 237 DIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELIN 296
D+ +W+ + F R V L H+ + + E +M A+ ++
Sbjct: 1524 DLGEWIGASSHG-----LFNFPPGVRPVPLEIHIQGV-DISSFEARMQAMTKPTYTAIVQ 1577
Query: 297 KHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTS-----SKRSNI-----KLQDKQLS 346
KP ++F PTR+ +TA + + H N S K + +++++ L
Sbjct: 1578 HAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDPFVEQIREETLK 1637
Query: 347 EIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWS 406
E GI + H GLS D+ ++ F G I+V +S+L G L A+LV++ GT+ +
Sbjct: 1638 ETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYD 1697
Query: 407 --INGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHL 464
N +Y D+LQM+GRA RP + G +I +E Y+ L +ES L
Sbjct: 1698 GRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPVESQLQH 1757
Query: 465 NLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIRSSILTSDAECQLTHF 524
L +N AE+ I + + A+++L TF YRR +NP +Y++ + L+
Sbjct: 1758 FLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNL--QGVSHRHLSDHLSEL 1815
Query: 525 CERTLKDLLSYKII-LDNNGNLCASGYGQAMTRHYILGDTVK---NIIRSNTSLKSLEVL 580
E TL DL + K I +++ L G + +YI T++ +++ S T +K L L
Sbjct: 1816 VENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKGL--L 1873
Query: 581 KILANASEFDSIRLKHNEKKLYREINANPLLRYPFTDKKKQLMSITSKEQKISLLIQYEL 640
+IL +ASE+D I ++ E+ R + + R+ F + K T K + L+Q
Sbjct: 1874 EILTSASEYDMIPIRPGEEDTVRRLINHQ--RFSFENPK-----CTDPHVKANALLQAHF 1926
Query: 641 SGLEYPSYKDAQKHHQTLVQDKMLVFRHAPRVLKCMIDCFIEKYDGDSLKSTLFLLRSVA 700
S Q L D+ V A R+L+ M+D + + + + V
Sbjct: 1927 S---------RQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVT 1977
Query: 701 GKGWEDTPMILRQLNTIGLVSLRKLVSHG--VCTFADMEKLTEQQIEYYLSLRPGNGYKI 758
WE M+L+ + ++ R + G + T D+ ++ +++ + L + I
Sbjct: 1978 QGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDI 2037
Query: 759 KSDLQMIPLLSLEYSVEEKTVTQNAIHVSFKVEVQANFKSASWHG-----------QQLC 807
P + L Y + V+ +V ++ + + + G ++
Sbjct: 2038 ARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGW 2097
Query: 808 MLIMLKTDTGILIDFRRTFLSKLKTPKAFRITIQVDRNTNFIEFVYSCEQIGGSNREIRY 867
L++ T T L+ +R L + K T + + C+ G ++E +
Sbjct: 2098 WLVVGDTKTNQLLAIKRVSLQR-KVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYSF 2156
Score = 260 bits (665), Expect = 7e-69
Identities = 213/705 (30%), Positives = 355/705 (50%), Gaps = 78/705 (11%)
Query: 48 RLLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN 106
+L+ ++ +PD AQ F + NR+Q++ ++ EN ++ +PTG+GKT + L IL
Sbjct: 484 KLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQ 543
Query: 107 A--MNRLD----RPSSVKVLYIAPTKSLCNEKYQQWKSKF--IMLSVGMLTSDTSFTELE 158
MNR K++Y+AP K+L E ++ + V L+ D S T E
Sbjct: 544 QLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGRE 603
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR--- 215
++ II+ TPEKWD+ITRK D + ++ L+++DEIH+L ++RG LE I+ R
Sbjct: 604 -IEETQIIVTTPEKWDIITRKSGDRT-YTQLVRLLIIDEIHLLHDNRGPVLESIVARTLR 661
Query: 216 -MNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVL-RHHVYSF 273
+ + +N+R+V +SAT+PN D+A +L+ G+ FD SYR V L + ++
Sbjct: 662 QIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGL----FKFDRSYRPVPLHQQYIGIS 717
Query: 274 YNKFNNEFQ-MDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTS 332
K FQ M+ L +++ KH VLIF +R+ T TAR A+ D M N +
Sbjct: 718 VKKPLQRFQLMNDLCYQKVLAGAGKHQ----VLIFVHSRKETSKTAR--AIRDTAMANDT 771
Query: 333 SKRSNIK--------------LQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIK 378
R + +++ L +I G A HHAGLS DR ++E F+ G ++
Sbjct: 772 LSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQ 831
Query: 379 VLCSTSTLAVGVNLPAYLVIIKGTRMWSINGS--QEYSTLDILQMIGRAGRPQFETEGTA 436
VL ST+TLA GVNLPA+ VIIKGT++++ E S LD++QM+GRAGRPQ++ G
Sbjct: 832 VLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEG 891
Query: 437 LILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYR 496
+I+T + Y +L+ +ES LA+ + AEI L ++ + + A +WL T+ Y
Sbjct: 892 IIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYI 951
Query: 497 RYLKNPAHYSVIRSSILTSDAECQLTHFCERTLKDLLSYKIILDNNGNLC----ASGY-- 550
R ++NP Y L DA + ER + S ILD N NL SGY
Sbjct: 952 RMVRNPTLYG------LAPDALAKDVVLEERRADLIHSAATILDKN-NLVKYDRKSGYFQ 1004
Query: 551 ----GQAMTRHYILGDTVKNIIRS-NTSLKSLEVLKILANASEFDSIRLKHNEKKLYREI 605
G+ + +YI T+ ++ +++ ++ + + EF + ++ +EK ++
Sbjct: 1005 VTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKL 1064
Query: 606 NANPLLRYPFTDKKKQLMSITSKEQKISLLIQYELSGLEYPSYKDAQKHHQTLVQDKMLV 665
L R P K+ ++ KI++L+Q +S L+ +L D + +
Sbjct: 1065 ----LDRVPIPIKE----TLEEPSAKINVLLQAYISQLKLEGL--------SLTSDMVYI 1108
Query: 666 FRHAPRVLKCMIDCFIEKYDGDSLKSTLFLLRSVAGKGWE-DTPM 709
+ A R+++ + + +++ + L L + V + W TP+
Sbjct: 1109 TQSAGRLVRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPL 1153
>ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1481
Score = 172 bits (436), Expect = 3e-42
Identities = 136/441 (30%), Positives = 228/441 (50%), Gaps = 49/441 (11%)
Query: 68 FNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKS 127
FN +Q+ +++ + + N +V +PTGSGKTV+ ++IL +R ++V YI P K+
Sbjct: 247 FNYIQSMVQDSVLKGDGNVLVCAPTGSGKTVIGMMSILR---EAERRKKMRVGYIVPMKA 303
Query: 128 LCNE---KYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRK---WT 181
L E +W S + +SV TSD ++ ++ +I+ TPEK+DV+TR W
Sbjct: 304 LAREICRTISRWFSGY-GISVVEHTSDV-YSGYAHLERTGVIVSTPEKFDVLTRNTDLWF 361
Query: 182 DYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADW 241
D LV++DEIH++ + RG+ +E ++ RM ++ RIV +SAT+PN D+ +
Sbjct: 362 D---------LVVIDEIHMVGDSRGAAVEAVVARM-AVRGGCRIVGLSATLPNYMDVGAF 411
Query: 242 LKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKG 301
+ P + F +R+ + + V N E +MD L L
Sbjct: 412 IGCNDPD-----IFYFGPEFRKSPIDYEVI---NVGAREREMDMTIEKVLENL----DSN 459
Query: 302 KPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLS 361
PVL+F +R + A I + M S +++ ++ E+ + + HHAGL
Sbjct: 460 GPVLVFVHSRNEALEVANEIRRY---MEKASDDGADVS---PEVRELLKHRVGIHHAGLD 513
Query: 362 MTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGS--QEYSTLDIL 419
R +ED + NG I V+ ST+TLA GVNLP VIIKGT ++ + S + ++++
Sbjct: 514 RKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKTVIIKGTEVYDASTSRWRPIKQIEMI 573
Query: 420 QMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCLHLNLAENIVAEIALNSI 479
QM GRAGR +G IL S ++ E L++ +++S L +L + + AEI + +
Sbjct: 574 QMFGRAGRS--GDDGCKGILI---SSKENEFLVQ--RSIDSRLLPSLCDCLNAEI-VKGM 625
Query: 480 TSIKSAMNWLKNTFFYRRYLK 500
+ ++W K+TF+Y R +K
Sbjct: 626 RRFEDMIDWFKHTFYYTRLVK 646
>Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2724
Score = 138 bits (348), Expect = 4e-32
Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 86/467 (18%)
Query: 84 ENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIML 143
+N + ++PT +GKT++ EL IL + + + K L+I P S+ EK +S F +
Sbjct: 242 KNLVYSAPTSAGKTLVAELLILKRVLEMRK----KALFILPFVSVAKEKKYYLQSLFQEV 297
Query: 144 SVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE 203
+ + S + + +I +CT E+ + + + + + +L +V+VDE+H+L +
Sbjct: 298 GIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKM-DLLGMVVVDELHMLGD 356
Query: 204 -HRGSTLEVILTRM---------------NSMCQNLRIVAVSATIPNIHDIADWLKTGGP 247
HRG LE++LT++ +S+ ++IV +SAT+PN+ +A WL
Sbjct: 357 SHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAE-- 414
Query: 248 TGVPAKVLAFDDSYRQVVLRHHV------YSFYNKFNNEFQM--------DALFNTRLVE 293
+ +R V L V Y K EF+ D + +
Sbjct: 415 --------LYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYET 466
Query: 294 LINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIK--------LQDKQL 345
+ + HS VL+FCP+++ A IA + +++ + +K L+ K+L
Sbjct: 467 ICDNHS----VLLFCPSKKWCEKLADIIAREFYNLHHQAEGEGLVKPSECPPVILEQKEL 522
Query: 346 SEIAQK------------------GIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLA 387
E+ + G+AFHHAGL+ +R +IE F G I+VL +TSTL+
Sbjct: 523 LEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLS 582
Query: 388 VGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEK 447
GVNLPA VII+ I G + L QM+GRAGR +T G+ LI + +
Sbjct: 583 SGVNLPARRVIIR----TPIFGGRPLDILTYKQMVGRAGRKGVDTVGSILICKNSEKSKG 638
Query: 448 YENLLKGTSTLESCLHLNLAENI-------VAEIALNSITSIKSAMN 487
L + SCL E + + EI + + S M+
Sbjct: 639 IALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMH 685
>SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1030
Score = 131 bits (329), Expect = 7e-30
Identities = 128/519 (24%), Positives = 238/519 (45%), Gaps = 81/519 (15%)
Query: 1 MSKEYEISSSNTSNDTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVS--VLPDS 58
++KEY +S S D + + N L + R A + ++ +P++ + D
Sbjct: 59 VNKEYAKNSLKLS-DAVSESKYLNPLLKDKRHDRSFALHKVVVPDDYDYIPLNKHIPSDP 117
Query: 59 AQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVK 118
+PFE + Q+ + + + R E+ +V++ T +GKTV+ E AI A+ R
Sbjct: 118 PAKTYPFE-LDPFQSTAIKCVERM-ESVLVSAHTSAGKTVIAEYAIAQALKNRQR----- 170
Query: 119 VLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITR 178
V+Y +P KSL N+KY++ S+F VG++T D S +A+ +I T E ++
Sbjct: 171 VIYTSPIKSLSNQKYRELLSEFG--DVGLMTGDVSINP-----SASCLIMTTE---ILRA 220
Query: 179 KWTDYPQFFAILSLVLVDEIHILQEH-RGSTLEVILTRMNSMCQNLRIVAVSATIPNIHD 237
+ ++ V+ DE+H +++ RG E L + +R + +SAT+PN
Sbjct: 221 MLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDA---IRFIFLSATLPNALQ 277
Query: 238 IADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVY-----SFY------NKFNNE-FQ--M 283
A W+ P V+ D YR L+H +Y Y NKF E F+ +
Sbjct: 278 FARWISEIHKQ--PCHVVYTD--YRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVL 333
Query: 284 DALFNTRLVELINKHSKG-------------------KPVLIFCPTRQSTIVTARHIALH 324
+ L ++ E +K SK P+++FC +++ + A
Sbjct: 334 EVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKL 393
Query: 325 DHEMNNTSSKRSNIKLQDKQLSEIAQ----------------KGIAFHHAGLSMTDRSVI 368
D +N+T +K ++ D ++++++ +GI HH+GL + ++
Sbjct: 394 D--LNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELV 451
Query: 369 EDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRP 428
E F G +++L +T T ++G+N+PA V+ + +S N + ++ + +QM GRAGR
Sbjct: 452 EILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRR 511
Query: 429 QFETEGTALILTDEGSQEKYENLLKG--TSTLESCLHLN 465
+T+G ++++ D+ E+ L L S HL+
Sbjct: 512 GIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHLS 550
>CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 923
Score = 127 bits (320), Expect = 7e-29
Identities = 127/526 (24%), Positives = 235/526 (44%), Gaps = 60/526 (11%)
Query: 7 ISSSNTSNDTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSAQCIF--- 63
+++ + ++D F L+F N + P +K P + L P LP+ ++
Sbjct: 107 LNNESENDDDPFGLSFRNEQVLMSKCAP---APEKRP-ETLTLDPSKCLPERDMEMYRKI 162
Query: 64 -PFENFNRMQTESF-ENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLY 121
+ F Q E + ENCI++ PTG+GKT++ E+ +L R + + + Y
Sbjct: 163 KKLDKFYDWQQECLSDKRLLDGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPY 222
Query: 122 IAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWT 181
+A + + ++ F + ++ F +++ K ++ + T EK +++
Sbjct: 223 VAIVQEKISA-LAPFEDAFGINIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLI 281
Query: 182 DYPQFFAILSLVLVDEIHILQEH-RGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIAD 240
Q + +V+VDE+H++ + RG+ LE +L + +IV +SAT+PNI D+
Sbjct: 282 TQGQLDRV-GMVVVDELHMIGDGGRGAILEQLLAKFLYKGTG-QIVGMSATLPNIDDLKF 339
Query: 241 WLKTGGPTGVPAKVLAFDDSYRQVVLRH--------HVYSFYNKFN--NEFQMDALFNTR 290
L+ + ++R V L H S N + + L +T
Sbjct: 340 ALRA----------FVYSTNFRPVELTEFVKIGQTMHQVSENGDLNPAGDLPTNNLKSTD 389
Query: 291 ---LVELINKHSKGKPVLIFCPTRQS----TIVTARHIALHDHEMNNTSSKR-------- 335
+ +L+ K +IFCP +++ ++ A+ + H + S
Sbjct: 390 PDGICQLLAKLIPKNSAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSD 449
Query: 336 SNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAY 395
++ + D L + G+A+HH+GL+ +R +E F G I V+C+TSTLA GVNLP
Sbjct: 450 NDDERMDAVLKQCILSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVR 509
Query: 396 LVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEK-YENLLKG 454
VIIK + G + LQM GRAGR F+T+G + + G +E+ + +LK
Sbjct: 510 RVIIKAPMV----GRERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLK- 564
Query: 455 TSTLESCLHLNLAENIVAEIALNSIT-----SIKSAMNWLKNTFFY 495
S + C+ +E + L+ + +I+ M ++ + FY
Sbjct: 565 -SDIPRCMSSLSSEESMGSFILDCVVLKLAENIEEIMTAVRYSLFY 609
>7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1051
Score = 127 bits (318), Expect = 1e-28
Identities = 130/444 (29%), Positives = 208/444 (46%), Gaps = 43/444 (9%)
Query: 81 RSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKF 140
R +N I PT GKT++ E+ +L + +R VL+I P S+ EK
Sbjct: 278 RQRKNLIYALPTSGGKTLVAEILMLRELLCRER----NVLFILPYVSIVQEKVSAMSPFA 333
Query: 141 IMLS--VGMLTSDTSFTELE-KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDE 197
I L V T+ + + K ++ I + EK V+ D + I LV+VDE
Sbjct: 334 IDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEI-GLVVVDE 392
Query: 198 IHILQEH-RGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWLK----TGGPTGVPA 252
+H++ E RG+TLE LT++ + N++IV +SATI N+ +I+ +L T G V
Sbjct: 393 LHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLNADVYTRGFRPVEL 452
Query: 253 KV-------LAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFNTRLVELINKHSKGKPVL 305
K L +S Q + V S ++N + L LI++ + L
Sbjct: 453 KEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLAGLISECAPEHCCL 512
Query: 306 IFCPTRQS----TIVTARHIALHDHEMNNTSSKRSNIKLQDKQ---LSEIAQK----GIA 354
+FCP+R++ ++ +R + H + S K + DK LS + K GIA
Sbjct: 513 VFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSPVLAKTLPYGIA 572
Query: 355 FHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYS 414
+HH+GL+ +R IE + G + V+C TSTLA GVNLPA VII+ + QE+
Sbjct: 573 YHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAPYV-----GQEFL 627
Query: 415 TL-DILQMIGRAGRPQFETEGTALILTDEG-----SQEKYENLLKGTSTLESCLHLNLAE 468
TL QM+GRAGR G ++++ Q + + K S+L+ + L
Sbjct: 628 TLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQS 687
Query: 469 NIVAEIALNSITSIKSAMNWLKNT 492
I++ + LN + + +N L N+
Sbjct: 688 LILSVVGLN-LAECRRDLNRLVNS 710
>7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2059
Score = 124 bits (312), Expect = 6e-28
Identities = 129/535 (24%), Positives = 244/535 (45%), Gaps = 75/535 (14%)
Query: 9 SSNTSNDTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSVLPDSAQCIFPFENF 68
+ N S+ + QL S + +R P+ + D +N +R + LP S Q + +
Sbjct: 171 TQNLSSMSPNQLRVSPNSSRIREAMPERPAMPLD-LNTLRSISAWNLPMSIQAEYKKKGV 229
Query: 69 NRM---QTESFENIYRSNENC--IVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIA 123
M Q E E+C + ++PT +GKT++ E+ +L + L+R KVL I
Sbjct: 230 VDMFDWQVECLSKPRLLFEHCNLVYSAPTSAGKTLVSEILMLKTV--LERGK--KVLLIL 285
Query: 124 PTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDY 183
P S+ EK + + +T ++ ++ ICT EK + I K +
Sbjct: 286 PFISVVREKMFYMQDLLTPAGYRVEGFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQ 345
Query: 184 PQFFAILSLVLVDEIHILQEH-RGSTLEVILTRMNSMCQN----LRIVAVSATIPNIHDI 238
+ I +V+VDE+H++ + RG LE++L ++ M + ++++ +SAT+ N+ +
Sbjct: 346 GKLETI-GMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENVQLL 404
Query: 239 ADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQM--DALFNTRLVELIN 296
WL + +YR V L+ + +++ ++ D L++ +
Sbjct: 405 QSWLDAE----------LYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLLKGLE 454
Query: 297 KHS------------KGKPVLIFCPTRQ------STIVTARHIALHDHEMNNTSSKRSNI 338
S +G V++FCP++ + TA H+ + + +R
Sbjct: 455 NDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQI---KSETVLGQRLRT 511
Query: 339 KLQDKQLSEIAQK------------------GIAFHHAGLSMTDRSVIEDKFTNGDIKVL 380
L + ++E+ Q+ AFHHAGL+ +R +IE F G +KVL
Sbjct: 512 NLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVL 571
Query: 381 CSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILT 440
+TSTL+ GVNLPA V+I+ + G ++ S+L QMIGRAGR +T G ++++
Sbjct: 572 VATSTLSSGVNLPARRVLIRS----PLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILIC 627
Query: 441 DEGSQEKYENL-LKGTSTLESCLHLNLAENI---VAEIALNSITSIKSAMNWLKN 491
+E + +L + + SCL ++ + ++ + E+ + + + K +++ N
Sbjct: 628 NEINARMGRDLVVSELQPITSCLDMDGSTHLKRALLEVISSGVANTKEDIDFFVN 682
>At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1548
Score = 123 bits (309), Expect = 1e-27
Identities = 108/397 (27%), Positives = 177/397 (44%), Gaps = 67/397 (16%)
Query: 161 KAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHIL-QEHRGSTLEVILTRMN-- 217
K ++ +CT EK + + + + + + L ++++DE+H++ +HRG LE++LT++
Sbjct: 54 KDTSVAVCTIEKANSLINRLLEEGRL-SELGIIVIDELHMVGDQHRGYLLELMLTKLRYA 112
Query: 218 ---------------------SMCQNLRIVAVSATIPNIHDIADWLKTGGPT-GVPAKVL 255
L+IV +SAT+PN+ +ADWL+ +
Sbjct: 113 AGEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQVSKTNHNLCVYAA 172
Query: 256 AFDDSYRQVVLRHHVY---SFYNK-------FNNEFQMDALFNTRLVELINKH-SKGKPV 304
+ +R V L ++ + YNK M +VEL N+ +G V
Sbjct: 173 LYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKDPDHIVELCNEVVQEGNSV 232
Query: 305 LIFCPTRQSTIVTARHIALH--------DHEMNNTSSKRSNIKLQ-------DKQLSEIA 349
LIFC +R+ TARHI+ D E + RS I D L E
Sbjct: 233 LIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPVLEETL 292
Query: 350 QKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSING 409
G+A+HHAGL++ +R ++E + G ++VL +TSTLA GVNLPA VI + + G
Sbjct: 293 PSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPMI----G 348
Query: 410 SQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGT-STLESCL--HLNL 466
QM GRAGR +T+G ++++ G ++ LL T L+SCL N
Sbjct: 349 RDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSEDKNG 408
Query: 467 AENIVAEIALNSITS--------IKSAMNWLKNTFFY 495
+ + E+ I ++ + W + T Y
Sbjct: 409 MTHAILEVVAGGIVQTAKDIHRYVRKFLEWNEETKLY 445
>Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1101
Score = 118 bits (295), Expect = 6e-26
Identities = 113/457 (24%), Positives = 206/457 (44%), Gaps = 61/457 (13%)
Query: 78 NIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWK 137
N + +N I + PT GKT++ E+ +L + + VL I P ++ EK
Sbjct: 347 NSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKD----VLMILPYVAIVQEKISGLS 402
Query: 138 SKFIMLSVGM---LTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVL 194
S I L + S F ++ + ++ I T EK + + + + L LV+
Sbjct: 403 SFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDS-LGLVV 461
Query: 195 VDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAK 253
VDE+H++ E RG+TLE+ L ++ + +I+ +SAT+ N+ D+ +L+
Sbjct: 462 VDELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQAE-------- 513
Query: 254 VLAFDDSYRQVVLRHH------VYSFYNKFNNEFQMDALFNTR------------LVELI 295
+ +R V L+ + +Y +K N L N + LV L+
Sbjct: 514 --YYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALV 571
Query: 296 NKHSKGKPVLIFCPTRQSTIVTARHIALH------DHEMNNTSSKRSNIK-LQDKQLSEI 348
+ L+FCP++++ A I H+ N+K + + L +
Sbjct: 572 TEVIPNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPV 631
Query: 349 AQK----GIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRM 404
++ G+A+HH+GL+ +R ++E+ ++ G + + TSTLA GVNLPA VI++ +
Sbjct: 632 LKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV 691
Query: 405 WSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKYENLLKGTSTLESCL-H 463
+ QMIGRAGR +T G ++++ E +++ L+ T LE+C H
Sbjct: 692 ----AKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELI--TKPLENCYSH 745
Query: 464 L------NLAENIVAEIALNSITSIKSAMNWLKNTFF 494
L + ++ I L T++ +++ TFF
Sbjct: 746 LVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFF 782
>CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1026
Score = 115 bits (288), Expect = 4e-25
Identities = 118/477 (24%), Positives = 214/477 (44%), Gaps = 85/477 (17%)
Query: 82 SNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFI 141
+N++ +V++ T +GKTV+ AI + R V+Y +P K+L N+KY++ + +F
Sbjct: 139 NNQSVLVSAHTSAGKTVVATYAIAKCLREKQR-----VIYTSPIKALSNQKYRELEEEF- 192
Query: 142 MLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHIL 201
VG++T D + A+ ++ T E ++ + + V+ DEIH +
Sbjct: 193 -KDVGLMTGDVTLNP-----DASCLVMTTE---ILRSMLYRGSEIMKEVGWVVYDEIHYM 243
Query: 202 QE-HRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDS 260
++ RG E + M+ +N++ +SATIPN A W+ + P V+ D
Sbjct: 244 RDKERGVVWEETIILMS---KNIKQAFLSATIPNARQFAQWVASIKQQ--PVNVVYTD-- 296
Query: 261 YRQVVLRHHVY-----SFYNKFN--NEFQMDAL----------------FNTR------- 290
YR L+H +Y Y N EF+ D FN R
Sbjct: 297 YRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSAGSFNKRRTGGGTQ 356
Query: 291 ----LVELINK--HSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKR--------- 335
++++I + G ++F +R+ A I+L D + N K
Sbjct: 357 GDSNVLKIIRSVASNDGLNCIVFSFSRKECESYA--ISLKDMDFNKDHEKGMVKSVYESA 414
Query: 336 -SNIKLQDKQLSEIA------QKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAV 388
+ + +D++L +I ++GI HH+GL + IE F G +KVL +T T ++
Sbjct: 415 IAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSM 474
Query: 389 GVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEG-SQEK 447
G+N+PA V+ R + + ++ ++ + +QM GRAGR + GT +++ D S +
Sbjct: 475 GLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADD 534
Query: 448 YENLLKGTSTLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFF--YRRYLKNP 502
+ ++KG + LN + + LN + A++W+ N F ++ Y K P
Sbjct: 535 AKQIIKGATD-----PLNSQFRLTYNMVLNLMRVEGMAVSWIINNSFHQFQSYAKIP 586
>At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 988
Score = 114 bits (286), Expect = 6e-25
Identities = 128/516 (24%), Positives = 231/516 (43%), Gaps = 100/516 (19%)
Query: 43 PVNEIRLLP-VSVLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFE 101
P N + L P V P + F ++F + +N E+ +V++ T +GKTV+
Sbjct: 45 PENYVPLAPSVHNKPPAKDFPFTLDSFQSEAIKCLDN----GESVMVSAHTSAGKTVVAS 100
Query: 102 LAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVK 161
AI ++ R V+Y +P K+L N+KY+ +K +F VG++T D +
Sbjct: 101 YAIAMSLKENQR-----VIYTSPIKALSNQKYRDFKEEFS--DVGLMTGDVTIDP----- 148
Query: 162 AANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLE--VILTRMNS 218
A+ ++ T E + K ++ + A ++ DE+H +++ RG E +++ NS
Sbjct: 149 NASCLVMTTEILRSMQYKGSEIMREVA---WIIFDEVHYMRDSERGVVWEESIVMAPKNS 205
Query: 219 MCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVY------- 271
R V +SAT+PN + ADW+ P ++ D YR L+H+V+
Sbjct: 206 -----RFVFLSATVPNAKEFADWVAKVHQQ--PCHIVYTD--YRPTPLQHYVFPAGGNGL 256
Query: 272 -------SFYNKFNNEFQMDALFNTRLVELINKHSKGK---------------------- 302
S +++ + + ++AL T E K GK
Sbjct: 257 YLVVDEKSKFHEDSFQKSLNALVPTN--ESDKKRDNGKFQKGLVIGKLGEESDIFKLVKM 314
Query: 303 -------PVLIFCPTRQSTIVTARHIAL----HDHEMNNT----SSKRSNIKLQDKQLSE 347
PV++F +++ A ++ D E + +S + DK+L +
Sbjct: 315 IIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQ 374
Query: 348 IA------QKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKG 401
++ ++GI HH+GL + VIE F G IK L +T T ++G+N+PA V+
Sbjct: 375 VSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTN 434
Query: 402 TRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKY-ENLLKGTS-TLE 459
R + + + S+ + +QM GRAGR + G +++ DE + +++LKG++ +L
Sbjct: 435 VRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLN 494
Query: 460 SCLHLNLAENIVAEIALNSITSIK-SAMNWLKNTFF 494
S HL+ + LN + + N L+N+FF
Sbjct: 495 SAFHLSY------NMLLNQLRCEEGDPENLLRNSFF 524
>Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1042
Score = 112 bits (281), Expect = 2e-24
Identities = 125/488 (25%), Positives = 214/488 (43%), Gaps = 90/488 (18%)
Query: 50 LPVSVLPDSAQCIFPF--ENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNA 107
LP+ A +PF + F R + +N N++ +V++ T +GKTV E AI A
Sbjct: 123 LPLKPRVGKAAKEYPFILDAFQREAIQCVDN----NQSVLVSAHTSAGKTVCAEYAIALA 178
Query: 108 MNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIII 167
+ R V++ +P K+L N+KY++ +F VG++T D + A+ ++
Sbjct: 179 LREKQR-----VIFTSPIKALSNQKYREMYEEF--QDVGLMTGDVTINP-----TASCLV 226
Query: 168 CTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIV 226
T E ++ + ++ V+ DEIH +++ RG E + + N+ V
Sbjct: 227 MTTE---ILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPD---NVHYV 280
Query: 227 AVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYS-------FYNKFNN 279
+SATIPN A+W+ P V+ D YR L+H+++ N
Sbjct: 281 FLSATIPNARQFAEWICHLHKQ--PCHVIYTD--YRPTPLQHYIFPAGGDGLHLVVDENG 336
Query: 280 EFQMDALFNTRLV------ELINKHSKGK-----------------------PVLIFCPT 310
+F+ D FNT + +L KG+ PV+IF +
Sbjct: 337 DFREDN-FNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFS 395
Query: 311 RQSTIVTARHIALHDHEMNNTSSKRSNIKL-----------QDKQLSEIA------QKGI 353
++ A + D NT ++ ++ +DK+L ++ ++GI
Sbjct: 396 KKDCEAYALQMTKLDF---NTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGI 452
Query: 354 AFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEY 413
HH GL + IE F+ G IK L +T T A+G+N+PA V+ R + +
Sbjct: 453 GIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWI 512
Query: 414 STLDILQMIGRAGRPQFETEGTALILTDEG-SQEKYENLLKGTS-TLESCLHL--NLAEN 469
S+ + +QM GRAGR + G +++ DE S + LLKG++ L S HL N+ N
Sbjct: 513 SSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLN 572
Query: 470 IVAEIALN 477
++ +N
Sbjct: 573 LLRVEEIN 580
>CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 273
Score = 112 bits (281), Expect = 2e-24
Identities = 90/277 (32%), Positives = 139/277 (49%), Gaps = 51/277 (18%)
Query: 192 LVLVDEIH-ILQEHRGSTLEVILTRM----NSMCQNLRIVAVSATIPNIHDIADWLKTGG 246
+++VDE+H + RG+ +E +L+++ S + +RI+ +SATIP ++ I WL
Sbjct: 1 MIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWLDG-- 58
Query: 247 PTGVPAKVLAFDDSYRQVVLRHHVY-------SFYNKFNNEFQMDALFNTRLVELINKHS 299
AKV F+ +R +VL++H+ S NK EF D L L+ + S
Sbjct: 59 -----AKV--FEARFRPIVLQNHIVIGSELRKSGDNKVLREFSEDPLI------LLTEES 105
Query: 300 --KGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSS-------KRSNIKL---------- 340
+ L+ ++ TA +IA HE+N T S +R+N L
Sbjct: 106 FRRNSQTLVMISSKLDAEKTALNIASRFHEINKTDSSLLEILKERANGLLFIKHGLERNG 165
Query: 341 -QDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVII 399
+D+ + G+A+HHAGL+M +R IE F +I +L +TSTLA GVNLPA V+I
Sbjct: 166 CKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLI 225
Query: 400 KGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTA 436
K G ++L+ QM+GRAGR T GT+
Sbjct: 226 KA----QPRGPSALTSLNYRQMVGRAGRTGHATRGTS 258
>CE24303 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1002
Score = 111 bits (278), Expect = 5e-24
Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 54/337 (16%)
Query: 48 RLLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN 106
++ VS LP A+ F +++ NR+Q+ ++ RS E+ ++ +PTG+GKT + L +L
Sbjct: 256 KITSVSELPKWAKPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVGLLTMLQ 315
Query: 107 AM-NRLDRPSSVK-----VLYIAPTKSLCNEKYQQWKSKFIM--LSVGMLTSDTSFTELE 158
+ N L SVK ++YIAPTKSL E + + ++VG +T + E
Sbjct: 316 EIGNHLAEDGSVKLEEFKIVYIAPTKSLVQEMVGSFSKRLAPFGITVGEMTGQMN---KE 372
Query: 159 KVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVI--LTRM 216
+ A +I+CTPEK+DV+TRK + + ++ L+++DEIH+L + RG LE I L R+
Sbjct: 373 QFMATQVIVCTPEKYDVVTRKGGERA-YNQMVRLLIIDEIHLLHDDRGPVLESIVQLFRI 431
Query: 217 NSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNK 276
M ++++ ++H FD+SYR V L+ + K
Sbjct: 432 RKMWRHVKT-------EHLH-------------------FFDNSYRPVPLKQQIIGVTEK 465
Query: 277 FNNEFQMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHE-------MN 329
N++ N + + I KH+ VL+F R+ T TA+ I E M
Sbjct: 466 -NDDSATSQAMNEAVYDKIMKHAGKSQVLVFVHYRKETTETAKAIRDACLEKDTLSAFMR 524
Query: 330 NTSSKRSNIKLQDKQ-----LSEIAQKGIAFHHAGLS 361
S+ ++ + +Q L ++ G A H+AG++
Sbjct: 525 EGSASTEILRTEAEQAKNLDLKDLLPYGFAIHNAGMN 561
>7294212 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 678
Score = 107 bits (268), Expect = 8e-23
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 17/179 (9%)
Query: 49 LLPVSVLPDSAQCIFP-FENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNA 107
L PV LP Q +F F+ NR+Q+ ++ S+EN ++ +PTG+GKT +A+L
Sbjct: 461 LQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKT---NVALLTM 517
Query: 108 MNRLDR---------PSSVKVLYIAPTKSLCNEKYQQWKSKFIM--LSVGMLTSDTSFTE 156
M + + K++Y+AP KSL E + + L+V LT D T
Sbjct: 518 MREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTR 577
Query: 157 LEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTR 215
E++ A +I+CTPEKWD+ITRK + F +++ LV++DEIH+L + RG LE ++ R
Sbjct: 578 -EQIAATQVIVCTPEKWDIITRKGGE-RTFVSLVRLVIIDEIHLLHDERGPVLEALVAR 634
>7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1055
Score = 107 bits (267), Expect = 1e-22
Identities = 123/493 (24%), Positives = 212/493 (42%), Gaps = 93/493 (18%)
Query: 47 IRLLPVSVLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILN 106
I L P S +P + + F + F R +N +++ +V++ T +GKTV+ E AI
Sbjct: 135 IPLKPFSGVP-AKEYPFVLDPFQRQAILCIDN----SQSVLVSAHTSAGKTVVAEYAIAK 189
Query: 107 AMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANII 166
++ R V+Y P K+L N+K++++ +F VG++T D + +A+ +
Sbjct: 190 SLAAKQR-----VIYTTPIKALSNQKFREFTDEF--KDVGLVTGDVTINP-----SASCL 237
Query: 167 ICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRI 225
I T E ++ + + V+ DEIH +++ RG E L + N+R
Sbjct: 238 IMTTE---ILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPD---NVRY 291
Query: 226 VAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVY-------SFYNKFN 278
V +SATIPN A+W+ P V+ D YR L+H+++
Sbjct: 292 VFLSATIPNARQFAEWVCHLHKQ--PCHVVYTD--YRPTPLQHYIFPAGGDGIHLIVDEK 347
Query: 279 NEFQMDALFNTRLVELINKHSKGK---------------------------------PVL 305
+F+ D F T + L N GK PV+
Sbjct: 348 GQFKEDN-FTTAMAVLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIMERNFAPVI 406
Query: 306 IFCPTRQSTIVTARHIA-----------LHDHEMNNTSSKRSNIKLQDKQLSEI------ 348
IF +++ + A +A L D NN + +D++L ++
Sbjct: 407 IFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTE---EDRRLPQVENVLPL 463
Query: 349 AQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSIN 408
++GI HH GL + IE F G IK L +T T A+G+N+PA V+ R +
Sbjct: 464 LRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK 523
Query: 409 GSQEYSTLDILQMIGRAGRPQFETEGTALILTDEG-SQEKYENLLKG-TSTLESCLHL-- 464
+ S+ + +QM GRAGR + +G +++ DE S ++++G + S HL
Sbjct: 524 KFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTY 583
Query: 465 NLAENIVAEIALN 477
N+ N++ +N
Sbjct: 584 NMVLNLLRVEEIN 596
>ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 933
Score = 106 bits (265), Expect = 2e-22
Identities = 102/418 (24%), Positives = 199/418 (47%), Gaps = 62/418 (14%)
Query: 56 PDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPS 115
P + +F ++F ++ S E +E+ +V++ T SGKTV+ E AI ++ S
Sbjct: 62 PAAKNYLFELDDFQKISVCSLER----DESVLVSAHTSSGKTVVAEYAIAMSLR-----S 112
Query: 116 SVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDV 175
+ +V+Y +P K+L N+KY++ S+F VG++T D + A+ ++ T E +
Sbjct: 113 NQRVVYTSPIKALSNQKYRELLSEF--SDVGLMTGDVTIN-----PTASCLVMTTE---I 162
Query: 176 ITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSATIPN 234
+ + + ++ DEIH +++ RG E + + +++R+V +SATIPN
Sbjct: 163 LRNMLYRGGEVVREIHWIIFDEIHYMRDKERGVVWEETIILLP---KHVRMVFLSATIPN 219
Query: 235 IHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQM-DALFN----T 289
+ A+W+ + + ++V+ + ++V H Y + N +++ DA F+
Sbjct: 220 ALEFAEWI-----SHIQSQVVHVVYTEKRVTPLVH----YFRSNKLYKIKDAKFHKSNFL 270
Query: 290 RLVELINKHSKGK------------PVLIFCPTRQSTIVTARHI---ALHDHEMNNTSSK 334
+ I K + G PV++F R+ A + L D E +
Sbjct: 271 SAMRSIRKRNVGPREVGEAIGDASLPVVVFSFKRKDCERFAMKLDGRYLTDEEARTVQTI 330
Query: 335 RSN----IKLQDKQLS------EIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTS 384
+N ++ +D+++ + +GI HH+GL + V+E F G +KVL +T
Sbjct: 331 FTNAIMSLRKEDREIPIIQNILPLLMRGIGIHHSGLLPIIKEVVEILFQEGLLKVLFATE 390
Query: 385 TLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDE 442
T ++G+N+PA V+ + + + S+ + +QM GRAGR ++ G + + E
Sbjct: 391 TFSIGLNMPAKSVVFTALKKFDGEAMRLVSSGEYIQMSGRAGRRGIDSMGIVISIISE 448
>YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1073
Score = 104 bits (259), Expect = 9e-22
Identities = 106/446 (23%), Positives = 197/446 (43%), Gaps = 90/446 (20%)
Query: 84 ENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIML 143
E+ +V++ T +GKTV+ E AI ++ R V+Y +P K+L N+KY++ ++F
Sbjct: 165 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-----VIYTSPIKALSNQKYRELLAEFG-- 217
Query: 144 SVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE 203
VG++T D + A ++ T E ++ + ++ V+ DE+H +++
Sbjct: 218 DVGLMTGDITINP-----DAGCLVMTTE---ILRSMLYRGSEVMREVAWVIFDEVHYMRD 269
Query: 204 -HRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYR 262
RG E + + +R V +SATIPN + A+W+ P ++ ++R
Sbjct: 270 KERGVVWEETIILLPD---KVRYVFLSATIPNAMEFAEWICK--IHSQPCHIVY--TNFR 322
Query: 263 QVVLRHHVY--------------SFYNKFNNEFQMDALFNT------------------- 289
L+H+++ S + + N + M ++ N
Sbjct: 323 PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYK 382
Query: 290 -------------RLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRS 336
++V++I K K PV++F +++ A ++ D N+ K +
Sbjct: 383 GGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLD--FNSDDEKEA 439
Query: 337 NIKL----------------QDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVL 380
K+ Q K + + ++GI HH+GL + VIE F G +KVL
Sbjct: 440 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 499
Query: 381 CSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILT 440
+T T ++G+N+PA V+ R W + S + +QM GRAGR + G +++
Sbjct: 500 FATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 559
Query: 441 DEGSQEKY-ENLLKG-TSTLESCLHL 464
DE + + + ++KG L+S HL
Sbjct: 560 DEKMEPQVAKGMVKGQADRLDSAFHL 585
>SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1117
Score = 99.0 bits (245), Expect = 4e-20
Identities = 111/476 (23%), Positives = 203/476 (42%), Gaps = 91/476 (19%)
Query: 53 SVLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLD 112
S +P + F + F + E E+ +V++ T +GKTV+ E A+ ++
Sbjct: 187 SPIPPARTYPFTLDPFQAVSIACIER----QESVLVSAHTSAGKTVVAEYAVAQSLRDKQ 242
Query: 113 RPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEK 172
R V+Y +P K+L N+KY++ ++F VG++T D + A ++ T E
Sbjct: 243 R-----VIYTSPIKALSNQKYRELLAEFG--DVGLMTGDVTINP-----DATCLVMTTE- 289
Query: 173 WDVITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSAT 231
++ + ++ V+ DEIH +++ RG E + + V +SAT
Sbjct: 290 --ILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSH---FVFLSAT 344
Query: 232 IPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVY--------------SFYNKF 277
IPN A+W+ P V+ D +R L+H+++ S + +
Sbjct: 345 IPNAMQFAEWITKIHRQ--PCHVVYTD--FRPTPLQHYLFPSGSDGIHLVVDEKSNFREE 400
Query: 278 NNEFQMDALFNTRLVELINKHSKGK------------------------------PVLIF 307
N + M AL + + +KG PV++F
Sbjct: 401 NFQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIVF 460
Query: 308 CPTRQSTIVTARHIALHDHEMNNTSSKR----------SNIKLQDKQLSEIA------QK 351
+++ A ++ D MN+ + + + + +D++L +I ++
Sbjct: 461 SFSKRECEALALQMSKLD--MNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRR 518
Query: 352 GIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQ 411
GI HH+GL + VIE F G +KVL +T T ++G+N+PA V+ R + +
Sbjct: 519 GIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFR 578
Query: 412 EYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKY-ENLLKG-TSTLESCLHLN 465
S + +QM GRAGR + G +++ DE +++LKG L+S HL+
Sbjct: 579 WISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLS 634
>Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1246
Score = 98.6 bits (244), Expect = 5e-20
Identities = 103/420 (24%), Positives = 181/420 (42%), Gaps = 89/420 (21%)
Query: 83 NENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIM 142
+++ V + T +GKTV+ E AI A + R +Y +P K+L N+K++ +++ F
Sbjct: 325 HDSVFVAAHTSAGKTVVAEYAIALAQKHMTR-----TIYTSPIKALSNQKFRDFRNTFG- 378
Query: 143 LSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQ 202
VG+LT D A+ +I T E + +D L V+ DE+H +
Sbjct: 379 -DVGLLTGDVQLHP-----EASCLIMTTEILRSMLYSGSDV---IRDLEWVIFDEVHYIN 429
Query: 203 E-HRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSY 261
+ RG E +L + ++ I+ +SAT+PN + ADW+ ++
Sbjct: 430 DVERGVVWEEVLIMLPD---HVSIILLSATVPNALEFADWIGRLKRR----QIYVISTVT 482
Query: 262 RQVVLRHHVYSFYNKFNNEFQMDALFNTRLV--------------ELINKHSKG------ 301
R V L H++++ N + ++ L ++R E ++KH++
Sbjct: 483 RPVPLEHYLFTG-NSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 541
Query: 302 -------------------------KPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRS 336
PV++F +R A + D TSS++S
Sbjct: 542 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDL---TTSSEKS 598
Query: 337 NIKL-----------QDKQL------SEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKV 379
I L D+QL SE+ +G+ HH+G+ + ++E F+ G +KV
Sbjct: 599 EIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKV 658
Query: 380 LCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALIL 439
L +T T A+GVN+PA V+ R + ++ + +QM GRAGR + GT ++L
Sbjct: 659 LFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILL 718
>At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 996
Score = 93.6 bits (231), Expect = 2e-18
Identities = 100/421 (23%), Positives = 185/421 (43%), Gaps = 88/421 (20%)
Query: 84 ENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIML 143
E+ +V++ T +GKT + E AI A R V+Y +P K+L N+KY++ + +F
Sbjct: 85 ESILVSAHTSAGKTAVAEYAIAMAFRDKQR-----VIYTSPLKALSNQKYRELQHEF--K 137
Query: 144 SVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE 203
VG++T D + + A+ ++ T E + + ++ + A V+ DEIH +++
Sbjct: 138 DVGLMTGDVTLSP-----NASCLVMTTEILRAMLYRGSEVLKEVA---WVIFDEIHYMKD 189
Query: 204 H-RGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYR 262
RG E + + +++V +SAT+ N + A+W+ P V+ D +R
Sbjct: 190 RERGVVWEESIIFLPPA---IKMVFLSATMSNATEFAEWICYLHKQ--PCHVVYTD--FR 242
Query: 263 QVVLRHHVYSFYN-------KFNNEFQMDALFNT-------------------------- 289
L+H+ + N +F+ D+
Sbjct: 243 PTPLQHYAFPMGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDGKKSANGKSGGRGAK 302
Query: 290 -----------RLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNI 338
++V++I + K +PV+IF +R+ A ++ D NT ++ +
Sbjct: 303 GGGGPGDSDVYKIVKMIMER-KFEPVIIFSFSRRECEQHALSMSKLDF---NTDEEKEVV 358
Query: 339 KL-----------QDKQLSEIA------QKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLC 381
+ +D+ L I Q+GIA HH+GL + ++E F G +K L
Sbjct: 359 EQVFNNAMQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALF 418
Query: 382 STSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTD 441
+T T A+G+N+PA V+ + W + + + + +QM GRAGR + G +I+ D
Sbjct: 419 ATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMID 478
Query: 442 E 442
E
Sbjct: 479 E 479
>ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 881
Score = 90.9 bits (224), Expect = 1e-17
Identities = 123/542 (22%), Positives = 233/542 (42%), Gaps = 85/542 (15%)
Query: 72 QTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNE 131
Q ++F + R++ + V++ T SGKT++ E AI L + + +Y +P K+L N+
Sbjct: 69 QRQAFYLLSRAS-SVFVSAHTSSGKTLVAEYAI-----SLSQIHGTRTIYTSPIKALSNQ 122
Query: 132 KYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTDYPQFFAILS 191
KY +K K+ VG++T D AA ++ T E + + D
Sbjct: 123 KYHDFKQKYD--DVGIITGDVQVNP-----AAKCLVMTTEILRNLVYRNGD---LLRDTE 172
Query: 192 LVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADWL-KTGGPTG 249
V+ DE+H + + RG E + + +++ + +SATIPN + ++W+ +T T
Sbjct: 173 FVVFDEVHYINDSERGVVWEECIIMIP---RHINFIMLSATIPNSLEFSEWVGRTKDKT- 228
Query: 250 VPAKVLAFDDSYRQVVLRHHVYSFYNKFN----------NEFQMDAL---------FNTR 290
+ S R V L H +Y + ++ + F+ D + +
Sbjct: 229 ----IYVISTSKRAVPLEHVIYCDWCVYSIDDGGGKRNASNFKGDLVPFSKKTRPTGKFK 284
Query: 291 LVELINKHSKGK--PVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIKL-------- 340
++++ N K K P + FC +++ A L +N+T S R +KL
Sbjct: 285 ILDVANFVVKKKLTPAIFFCFSKRKCEDYAE--ILRTLNLNDTKS-REEVKLFLSEATRC 341
Query: 341 ---QDKQLSEIAQ------KGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVN 391
+D+ L ++ G+A HH L + +E F+ +K+L +T T A+GVN
Sbjct: 342 LSPEDRNLPQVLSMSSMVLNGVAVHHGSLLPFVKECVELLFSMNLVKLLIATETFAMGVN 401
Query: 392 LPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDE-GSQEKYEN 450
+PA + + S+ + +QM GRAGR + GT +I + S +
Sbjct: 402 MPAKCCVFLSLSKIDGGVFRYISSGEYIQMSGRAGRRGMDAVGTVMIADPKMPSLSTIQG 461
Query: 451 LLKGTS-TLESCLHLNLAENIVAEIALNSITSIKSAMNWLKNTFFYRRYLKNPAHYSVIR 509
++ GT +L S L+ + I+L S ++ M R Y ++ + + R
Sbjct: 462 IIHGTPFSLSSQFRLSFG---LILISLRSNIRVEDLMR--------RSYGEHRSQRNYER 510
Query: 510 SSILTSDAECQLTHFCERTLKDLLSYKIILDNNGNLCASGYGQAMTRHYILGDTVKNIIR 569
S+ E C DL Y ++ +CA + + + +H++L + + +++
Sbjct: 511 DMKKLSELESVEEDVC-NVCGDLSKYIGAVE---EICARNW-KLIAKHHVLKEGSRVLLK 565
Query: 570 SN 571
+N
Sbjct: 566 NN 567
>At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1347
Score = 77.0 bits (188), Expect = 1e-13
Identities = 79/281 (28%), Positives = 125/281 (44%), Gaps = 27/281 (9%)
Query: 271 YSFYNKFNNEFQMDALFNTRLVELINKHSKGK--PVLIFCPTRQSTIVTARHIALHDHEM 328
YS ++ N F+ A N L LINK SK PV++FC ++ A AL ++
Sbjct: 610 YSGNSQNNGAFRRSAASNWLL--LINKLSKMSLLPVVVFCFSKNYCDRCAD--ALTGTDL 665
Query: 329 NNTSSKR----------SNIKLQDKQLSEIAQ------KGIAFHHAGLSMTDRSVIEDKF 372
++S K S +K D+ L ++ + +GI HHAGL + V+E F
Sbjct: 666 TSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEMLF 725
Query: 373 TNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFET 432
G IKVL ST T A+GVN PA V+ R + ++ + QM GRAGR +
Sbjct: 726 CRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDK 785
Query: 433 EGTALIL-TDEGSQEK-YENLLKGTST-LESCLHLNLAENIVAEIALNSITSIKSAMNWL 489
GT +++ DE E ++ G++T LES L ++ + ++ +
Sbjct: 786 TGTVVVMCRDEVPDESDLRRVIVGSATRLES--QFRLTYIMILHLLRVEELKVEDMLKRS 843
Query: 490 KNTFFYRRYLKNPAHYSVIRSSILTSDAECQLTHFCERTLK 530
F ++ L +I+ S+ T E L + R +K
Sbjct: 844 FAEFHAQKKLPEKQQLLMIKRSLPTKHIEIDLLIYSSRCIK 884
Score = 65.5 bits (158), Expect = 4e-10
Identities = 56/190 (29%), Positives = 92/190 (47%), Gaps = 23/190 (12%)
Query: 54 VLPDSAQCIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDR 113
++PD A FPFE + Q E+ + + E+ V + T +GKTV+ E A A R
Sbjct: 340 LVPDMA-IEFPFE-LDNFQKEAICCLEKG-ESVFVAAHTSAGKTVVAEYAFALATKHCTR 396
Query: 114 PSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKW 173
+Y AP K++ N+KY+ + KF VG+LT D S A+ +I T E
Sbjct: 397 -----AVYTAPIKTISNQKYRDFCGKF---DVGLLTGDVSIRP-----EASCLIMTTEIL 443
Query: 174 DVITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSATI 232
+ + D + V+ DE+H + + RG E ++ + +++ V +SAT+
Sbjct: 444 RSMLYRGAD---IIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLP---RHINFVLLSATV 497
Query: 233 PNIHDIADWL 242
PN + ADW+
Sbjct: 498 PNTFEFADWI 507
>YDR291w [A] KOG4150 Predicted ATP-dependent RNA helicase
Length = 1077
Score = 76.6 bits (187), Expect = 2e-13
Identities = 94/408 (23%), Positives = 183/408 (44%), Gaps = 70/408 (17%)
Query: 66 ENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPT 125
ENF Q ++ ++++ EN I+T+ T SGK+++++LA ++ + L P S +YI PT
Sbjct: 289 ENFYSHQADAINSLHQG-ENVIITTSTSSGKSLIYQLAAIDLL--LKDPEST-FMYIFPT 344
Query: 126 KSLCNEKYQQWK---SKFIMLSVGMLTSDTSFTELEK----VKAANIIICTPEKWDV-IT 177
K+L ++ + +K SK L ++ + TE E+ K A +I P+ I
Sbjct: 345 KALAQDQKRAFKVILSKIPELKNAVVDTYDGDTEPEERAYIRKNARVIFTNPDMIHTSIL 404
Query: 178 RKWTDYPQFFAILSLVLVDEIHILQEHRGSTLEVILTRMNSMC------QNLRIVAVSAT 231
++ F L LV+VDE+HI + GS + +++ R+ +C L+ ++ SAT
Sbjct: 405 PNHANWRHFLYHLKLVVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQFISCSAT 464
Query: 232 IPN----------IHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEF 281
+ + I+++ + G PTG V+ + +L H N
Sbjct: 465 LKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVV-----WNPPILPQHERKRENFIRESA 519
Query: 282 QMDALFNTRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIKLQ 341
++ LV+LI + + + FC R+ + + + NI ++
Sbjct: 520 KI-------LVQLILNNVR---TIAFCYVRRVCELLMKEV--------------RNIFIE 555
Query: 342 DKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAY-LVIIK 400
+ + + + + G S +DR IE + +G++K + ST+ L +G+++ V++
Sbjct: 556 TGREDLVTE--VMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMC 613
Query: 401 GTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGSQEKY 448
G + S + Q GRAGR ++ T ++ +D + Y
Sbjct: 614 GFPL---------SMANFHQQSGRAGRRNNDSL-TLVVASDSPVDQHY 651
>YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1287
Score = 73.6 bits (179), Expect = 2e-12
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 336 SNIKLQDKQLSEIA------QKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVG 389
+ +K +D+ L +I ++GIA HH GL + +IE F+ G IKVL +T T A+G
Sbjct: 669 TRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMG 728
Query: 390 VNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALIL 439
+NLP VI R NG +E + + QM GRAGR ++ GT +++
Sbjct: 729 LNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 778
Score = 70.5 bits (171), Expect = 1e-11
Identities = 51/192 (26%), Positives = 97/192 (49%), Gaps = 24/192 (12%)
Query: 54 VLPDSAQCIFPFENFNRMQTESFENIYR--SNENCIVTSPTGSGKTVLFELAILNAMNRL 111
++P+ A+ +PFE + T E +Y ++ V + T +GKTV+ E AI A +
Sbjct: 318 LIPNPARS-WPFE----LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM 372
Query: 112 DRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPE 171
K +Y +P K+L N+K++ +K F +++G++T D AN +I T E
Sbjct: 373 -----TKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQIN-----PDANCLIMTTE 422
Query: 172 KWDVITRKWTDYPQFFAILSLVLVDEIHILQEH-RGSTLEVILTRMNSMCQNLRIVAVSA 230
+ + D + V+ DE+H + + RG E ++ + Q+++ + +SA
Sbjct: 423 ILRSMLYRGAD---LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP---QHVKFILLSA 476
Query: 231 TIPNIHDIADWL 242
T+PN ++ A+W+
Sbjct: 477 TVPNTYEFANWI 488
>SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1213
Score = 67.0 bits (162), Expect = 2e-10
Identities = 36/107 (33%), Positives = 57/107 (52%)
Query: 334 KRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLP 393
K + Q ++ E+ +G+A HH GL + ++E F G +KVL +T T A+GVN+P
Sbjct: 597 KEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMP 656
Query: 394 AYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILT 440
A V+ GT+ ++ + Q GRAGR + GT +IL+
Sbjct: 657 AKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILS 703
Score = 63.9 bits (154), Expect = 1e-09
Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 46/294 (15%)
Query: 6 EISSSNTSNDTTFQLNFSNSLTRPLRKKPKIATLQKDPVNEIRLLPVSV----LPDSAQC 61
++ SSN + T +LN L K +I L D + + L P ++ PD A
Sbjct: 199 KVKSSNRNFVTIHELN--EHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLHKQPDYAHV 256
Query: 62 I---FPFENFNRMQTESF------------ENIYR--SNENCIVTSPTGSGKTVLFELAI 104
+ P ENF ++ E E IY ++ V + T +GKTV+ E AI
Sbjct: 257 VDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAI 316
Query: 105 LNAMNRLDRPSSVKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAAN 164
A + K +Y +P K+L N+K++ +K KF VG+LT D +
Sbjct: 317 ALAQKHM-----TKAIYTSPIKALSNQKFRDFKHKF--EDVGILTGDVQVN-----PEGS 364
Query: 165 IIICTPEKWDVITRKWTDYPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNL 223
++ T E + + D + V+ DE+H + + RG E ++ + ++
Sbjct: 365 CLLMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLP---PHV 418
Query: 224 RIVAVSATIPNIHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKF 277
++ +SAT+PN + A W+ G T + R V L H+++ N F
Sbjct: 419 TLILLSATVPNTKEFASWV---GRT-KKKNIYVISTLKRPVPLEHYLWVKQNMF 468
>CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1260
Score = 66.2 bits (160), Expect = 3e-10
Identities = 69/271 (25%), Positives = 125/271 (45%), Gaps = 33/271 (12%)
Query: 6 EISSSNTSNDTTFQLNFSNSLTRPLRKKPKIA---TLQKDPVNEIRLLPVSVLPDSAQCI 62
EI +T + + T P ++K + A L D +E + L ++ +
Sbjct: 228 EIEIPIIPGNTEKVIEIFGAATEPTKEKFEFAQRLVLSADEEDEYKRLVPTMARKYPFSL 287
Query: 63 FPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYI 122
PF+ + + E E+++ V + T +GKTV+ E AI L + + +Y
Sbjct: 288 DPFQQSSVLCMERGESLF-------VAAHTSAGKTVVAEYAIA-----LCQAHKTRAVYT 335
Query: 123 APTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTD 182
+P K+L N+K++ +K I VG++T D +AA +I+ T +++ +
Sbjct: 336 SPIKALSNQKFRDFKQ--IFGDVGLVTGDIQLHP----EAACLIMTT----EILRSMLYN 385
Query: 183 YPQFFAILSLVLVDEIHILQ-EHRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADW 241
+ L V+ DE+H + E RG E +L + + +++IV +SAT+PN + ADW
Sbjct: 386 GSEVIRDLEWVVFDEVHYINNEERGHVWEEVLIMLPA---HVKIVMLSATVPNCVEFADW 442
Query: 242 LKTGGPTGVPAKVLAFDDSYRQVVLRHHVYS 272
+ G V++ D R V L H +Y+
Sbjct: 443 V--GRIKNRKINVISTD--RRPVPLEHFLYT 469
Score = 60.5 bits (145), Expect = 1e-08
Identities = 37/126 (29%), Positives = 63/126 (49%), Gaps = 9/126 (7%)
Query: 338 IKLQDKQLSEIAQ------KGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVN 391
+K DK+L ++ +G A HH+G+ + V+E F G +K+L +T T A+GVN
Sbjct: 601 LKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVN 660
Query: 392 LPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILTDEGS---QEKY 448
+PA V+ + + + QM GRAGR + GT +I+ + + +
Sbjct: 661 MPARCVVFDSIMKHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVL 720
Query: 449 ENLLKG 454
+NL+ G
Sbjct: 721 KNLISG 726
>At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1171
Score = 65.5 bits (158), Expect = 4e-10
Identities = 42/112 (37%), Positives = 61/112 (53%), Gaps = 2/112 (1%)
Query: 351 KGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGS 410
+GIA HHAG +S IE+ F G +KV+ +T TLA G+N+PA +I + N
Sbjct: 496 RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNER 555
Query: 411 QEYSTLDILQMIGRAGRPQFETEG-TALILTD-EGSQEKYENLLKGTSTLES 460
E ++ QM GRAGR + +G T L+ T EG++E + + G L S
Sbjct: 556 IELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVS 607
Score = 63.2 bits (152), Expect = 2e-09
Identities = 50/188 (26%), Positives = 94/188 (49%), Gaps = 29/188 (15%)
Query: 63 FPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYI 122
F + F R+ E+F + +V++PT SGKT++ E A ++ + + R + Y
Sbjct: 153 FRIDKFQRLAIEAFLR----GSSVVVSAPTSSGKTLIAEAAAVSTVAKGRR-----LFYT 203
Query: 123 APTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTD 182
P K+L N+K+++++ F +VG+LT D++ K A I+I T E I R
Sbjct: 204 TPLKALSNQKFREFRETFGDDNVGLLTGDSAIN-----KDAQIVIMTTE----ILRNMLY 254
Query: 183 YPQFFAI-------LSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSATIPN 234
A + +++DE+H L + RG+ E I+ + ++++ +SAT+ N
Sbjct: 255 QSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCP---KEVQLICLSATVAN 311
Query: 235 IHDIADWL 242
++A W+
Sbjct: 312 PDELAGWI 319
>CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1714
Score = 64.7 bits (156), Expect = 8e-10
Identities = 37/114 (32%), Positives = 65/114 (56%), Gaps = 7/114 (6%)
Query: 327 EMNNTSSKRSNIKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTL 386
+M K + + + L ++ ++GI +HHAGL+ +R +E F +G++ VL STSTL
Sbjct: 1256 KMVERMQKGAKTRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTL 1315
Query: 387 AVGVNLPAYLVIIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALILT 440
++GVN+P V M+ ++ + + + L QM GRAGR F+ G + ++
Sbjct: 1316 SLGVNMPCKTV------MFGVD-TLQLTPLLYRQMSGRAGRRGFDHSGNVIFMS 1362
>7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 474
Score = 61.2 bits (147), Expect = 8e-09
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 21/181 (11%)
Query: 63 FPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYI 122
FPFE + Q ++ + + V + T +GKTV+ E AI L + + +Y
Sbjct: 259 FPFE-LDVFQKQAILKL-EQRQYVFVAAHTSAGKTVVAEYAIA-----LSKRDLTRTIYT 311
Query: 123 APTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAANIIICTPEKWDVITRKWTD 182
+P K+L N+KY+ ++ F VG++T D L+ A+ +I T E + +D
Sbjct: 312 SPIKALSNQKYRDFRKTF--KDVGLITGD-----LQIEPTASCLIMTTEILRSMLYCGSD 364
Query: 183 YPQFFAILSLVLVDEIHILQE-HRGSTLEVILTRMNSMCQNLRIVAVSATIPNIHDIADW 241
+ L V+ DE+H + RG E ++ + +++ I+ +SAT+PN ++ADW
Sbjct: 365 VTRD---LEWVIFDEVHYINNPERGHVWEEVIILLP---EHVNIIMLSATVPNTLELADW 418
Query: 242 L 242
+
Sbjct: 419 V 419
>ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1337
Score = 59.7 bits (143), Expect = 2e-08
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 338 IKLQDKQLSEIAQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLV 397
IK D + ++ +G+ HHA ++ RS++E F ++VL +T TLA+G+N+P V
Sbjct: 953 IKNTDFEFIDMLYRGMGVHHAHMNRKYRSLVEILFRQKHLQVLFATETLALGINMPCRTV 1012
Query: 398 IIKGTRMWSINGSQEYSTLDILQMIGRAGRPQFETEGTALIL 439
+ G S + ++ QM GRAGR F+T G + +
Sbjct: 1013 VFAG-------DSLQLDPMNYKQMAGRAGRRGFDTLGNVVFM 1047
>SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1717
Score = 54.3 bits (129), Expect = 1e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 351 KGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSINGS 410
+GI HH+GL+ R ++E F G + V+ +T TL++G+N+P V+ G S
Sbjct: 1223 RGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLG-------DS 1275
Query: 411 QEYSTLDILQMIGRAGRPQFETEG 434
+ + L+ Q GRAGR F+ G
Sbjct: 1276 LQLNALNFHQAAGRAGRRGFDLLG 1299
>CE26682 [R] KOG0353 ATP-dependent DNA helicase
Length = 674
Score = 53.9 bits (128), Expect = 1e-06
Identities = 79/373 (21%), Positives = 150/373 (40%), Gaps = 64/373 (17%)
Query: 63 FPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYI 122
F E F +Q + N S E+ +V TG GK++ ++L L A N L L +
Sbjct: 105 FHLEKFRPLQRAAI-NAVMSKEDAVVILSTGGGKSLCYQLPALLA-NGL-------ALVV 155
Query: 123 APTKSLCNEKYQQWKSKFIMLSVGMLTSDTSFTELEKVKAA--------NIIICTPEKWD 174
+P SL ++ Q +S + + L ++TS E ++V+ A ++ TPEK
Sbjct: 156 SPLISLVEDQILQLRS--LGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLA 213
Query: 175 VITRKWTDYPQFFAI--LSLVLVDEIHILQE--HRGSTLEVILTRMNSMCQNLRIVAVSA 230
+ + ++ L L+ +DE+H + H T L + + + I+ ++A
Sbjct: 214 KSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTA 273
Query: 231 TIPN--IHDIADWLKTGGPTGVPAKVLAFDDSYRQVVLRHHVYSFYNKFNNEFQMDALFN 288
T + + D+ D L G+ A L F + + L+ Y K +E +
Sbjct: 274 TATSNVLDDVKDML------GIQA-ALTFRAGFNRSNLK---YKVVQKPGSEDEC----T 319
Query: 289 TRLVELINKHSKGKPVLIFCPTRQSTIVTARHIALHDHEMNNTSSKRSNIKLQDKQLSEI 348
+ + I + G+ +I+C +R A+ + H + +
Sbjct: 320 EEIAKTIKRDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKH------------------ 361
Query: 349 AQKGIAFHHAGLSMTDRSVIEDKFTNGDIKVLCSTSTLAVGVNLPAYLVIIKGTRMWSIN 408
+HA + DRS + +G I+V+ +T +G++ P +I + SI
Sbjct: 362 -------YHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIE 414
Query: 409 GSQEYSTLDILQM 421
+ S +L+M
Sbjct: 415 NYYQASARILLRM 427
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 52.0 bits (123), Expect = 5e-06
Identities = 47/176 (26%), Positives = 83/176 (46%), Gaps = 20/176 (11%)
Query: 4 EYEISSSNTSN-DTTFQLNFSNSLTRPLRKKPKIATLQKDPVNE--IRLLPVSVLPDSAQ 60
EYE S S+ DT+ + N L L ++ K P++E I+LL
Sbjct: 103 EYEKKSKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGR----GVT 158
Query: 61 CIFPFENFNRMQTESFENIYRSNENCIVTSPTGSGKTVLFELAILNAMNR----LDRPSS 116
+FP +Q ++F +Y + I + TG+GKT F + ++ + R + + S
Sbjct: 159 YLFP------IQVKTFGPVYEGKD-LIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 211
Query: 117 VKVLYIAPTKSLCNEKYQQWKSKFIMLSVGMLTSDTSF-TELEKVK-AANIIICTP 170
KVL +APT+ L N+ + +K LSV TS+ +++ ++ +I++ TP
Sbjct: 212 PKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNGIDILVGTP 267
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,834,098
Number of Sequences: 60738
Number of extensions: 2535078
Number of successful extensions: 7947
Number of sequences better than 1.0e-05: 49
Number of HSP's better than 0.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7596
Number of HSP's gapped (non-prelim): 104
length of query: 1087
length of database: 30,389,216
effective HSP length: 117
effective length of query: 970
effective length of database: 23,282,870
effective search space: 22584383900
effective search space used: 22584383900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)