ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV2897   suspect: LH   R     KOG4197  General function prediction only                               FOG: PPR repeat

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV2897 985655  987415 587  
         (587 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09190 [R] KOG4197 FOG: PPR repeat                                  68   3e-11

>At1g09190 [R] KOG4197 FOG: PPR repeat
          Length = 999

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 47/146 (32%), Positives = 79/146 (53%), Gaps = 9/146 (6%)

Query: 82  AMKRFKLICEDFGVPETGVRVVATEATREALNSQEFIDAIYDSTGWDVEILTKEEEGRIG 141
           ++++FK +     V    +R VATEA R A N +EF+DA+++  G  V++L+ EEE R+ 
Sbjct: 70  SLRKFKSLILSHHVSGDRIRCVATEALRRAENQEEFVDAVFEDVGLKVDVLSGEEEARLV 129

Query: 142 AYGVISSFNTV--SGLYIDLGGGSTQLSWIKCVNGEITQSSTPVSLPFGAGALTRRMKFE 199
             GV+        S L +D+GGGST+    KC  G++      VSL  G   LT+   F 
Sbjct: 130 YLGVLQFLPVFEKSVLCVDIGGGSTEFVVGKC--GDV---KLAVSLKLGHVNLTQ--MFM 182

Query: 200 SKHVLLQEIVDAYKSAVTKIGIPKEM 225
              + L+E+ D  + A+ +  + +++
Sbjct: 183 KNGIGLKEMRDYIRHAIDESRLAEKL 208


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,272,706
Number of Sequences: 60738
Number of extensions: 1492824
Number of successful extensions: 3381
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3379
Number of HSP's gapped (non-prelim): 1
length of query: 587
length of database: 30,389,216
effective HSP length: 112
effective length of query: 475
effective length of database: 23,586,560
effective search space: 11203616000
effective search space used: 11203616000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)