ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2900 good O KOG0185 Posttranslational modification, protein turnover, chaperones 20S proteasome, regulatory subunit beta type PSMB4/PRE4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2900 987844 988638 265
(265 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFR050c [O] KOG0185 20S proteasome regulatory subunit beta type ... 383 e-106
SPBC577.10 [O] KOG0185 20S proteasome regulatory subunit beta ty... 231 6e-61
Hs4506199 [O] KOG0185 20S proteasome regulatory subunit beta typ... 196 3e-50
At1g56450 [O] KOG0185 20S proteasome regulatory subunit beta typ... 159 5e-39
7296763 [O] KOG0185 20S proteasome regulatory subunit beta type ... 157 1e-38
ECU05g0290 [O] KOG0185 20S proteasome regulatory subunit beta ty... 125 5e-29
CE20761 [O] KOG0185 20S proteasome regulatory subunit beta type ... 112 4e-25
Hs4506201 [O] KOG0175 20S proteasome regulatory subunit beta typ... 59 9e-09
Hs4758970 [O] KOG0175 20S proteasome regulatory subunit beta typ... 54 3e-07
Hs22056396 [O] KOG0175 20S proteasome regulatory subunit beta ty... 54 3e-07
SPAC4A8.13c [O] KOG0175 20S proteasome regulatory subunit beta t... 53 4e-07
ECU02g0340 [O] KOG0180 20S proteasome regulatory subunit beta ty... 50 4e-06
CE17564 [O] KOG0173 20S proteasome regulatory subunit beta type ... 50 4e-06
CE25941 [O] KOG0174 20S proteasome regulatory subunit beta type ... 49 6e-06
>YFR050c [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 266
Score = 383 bits (984), Expect = e-106
Identities = 185/266 (69%), Positives = 223/266 (83%), Gaps = 1/266 (0%)
Query: 1 MNHDPFAWGRPSDEHYGAYNHAIAQASNNPKMNTQNPIITGTSVISIKYNNGVIVAADNL 60
MNHDPF+WGRP+D YGAYN IA A +P +NTQ PI+TGTSVIS+KY+NGVI+AADNL
Sbjct: 1 MNHDPFSWGRPADSTYGAYNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNL 60
Query: 61 GAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQYIQHLLDEMEIENNYDSAYADNEEQL 120
G+YGSLLRF ERLI VG NTVVG+SGDISDMQ+I+ LL ++ EN YD+ AD EE L
Sbjct: 61 GSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEAL 120
Query: 121 KPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTE-DGKPFLRYVNLLGVTYSSPTLATGFG 179
+PS++FEYL++VMYQRRSK++PLWNAIIV G + +G FLRYVNLLGVTYSSPTLATGFG
Sbjct: 121 EPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFG 180
Query: 180 AHLALPLLRKLVDTEKDVEKVNLDVAKKAILEAMKILYYRDARSSRKFSLAIIDNELGLN 239
AH+A PLLRK+VD E D+ K + VA++AI+ AM++LYYRDARSSR FSLAIID GL
Sbjct: 181 AHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLT 240
Query: 240 IEKDLQVENMSWEFAKDIRGYGTQKV 265
+K+LQVENM W+FAKDI+GYGTQK+
Sbjct: 241 FKKNLQVENMKWDFAKDIKGYGTQKI 266
>SPBC577.10 [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 262
Score = 231 bits (590), Expect = 6e-61
Identities = 122/261 (46%), Positives = 175/261 (66%), Gaps = 11/261 (4%)
Query: 8 WGRPSDEHYGAYNHAIAQASNNPKMNTQNPIITGTSVISIKYNNGVIVAADNLGAYGSLL 67
WG+P + + + ++++ P T PI+TG+SV+++K+ +GV++AADNL +YGSL
Sbjct: 10 WGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLA 69
Query: 68 RFTNEERLIKVGPNTVVGVSGDISDMQYIQHLLDEMEI-ENNYDSAYADNEEQLKPSFVF 126
RF + ERL KVG NT+VG GDISD Q IQ LL+++EI E NY YA L+PS++
Sbjct: 70 RFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYA-----LQPSYIH 124
Query: 127 EYLSSVMYQRRSKLDPLWNAIIVGGT--EDGKPFLRYVNLLGVTYSSPTLATGFGAHLAL 184
EYLS V+Y RR+KLDP WN +IV G E+ +P++ + +L G TYS+P +ATGF HLAL
Sbjct: 125 EYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLAL 184
Query: 185 PLLRKLVDTEKDVEKVNLDVAKKAILEAMKILYYRDARSSRKFSLAIIDNELGLNIEKDL 244
P+LRK D ++ + ++ + A+ I E M++L+YRDARS KFS+A I E G+ + D
Sbjct: 185 PMLRKATDDDR-WKTLSKESARATIDECMRVLFYRDARSLNKFSVATITPE-GIEFQTDQ 242
Query: 245 QVENMSWEFAKDIRGYGTQKV 265
V + W FA+ GYGTQ V
Sbjct: 243 SVSS-KWAFAEKQYGYGTQTV 262
>Hs4506199 [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 264
Score = 196 bits (498), Expect = 3e-50
Identities = 98/231 (42%), Positives = 150/231 (64%), Gaps = 9/231 (3%)
Query: 30 PKMNTQNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGD 89
P TQNP++TGTSV+ +K+ GV++AAD LG+YGSL RF N R+++V +T++G SGD
Sbjct: 42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGD 101
Query: 90 ISDMQYIQHLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIV 149
+D QY++ +L +M I D + P + +L+ MY RRSK++PLWN +++
Sbjct: 102 YADFQYLKQVLGQMVI----DEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVI 157
Query: 150 GGTEDGKPFLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAI 209
GG DG+ FL YV++LGV Y +P+LATG+GA+LA PLLR++++ + + + A+ +
Sbjct: 158 GGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTE---ARDLV 214
Query: 210 LEAMKILYYRDARSSRKFSLAIIDNELGLNIEKDLQVENMSWEFAKDIRGY 260
M++LYYRDARS +F A + E G+ IE L E +W+ A I G+
Sbjct: 215 ERCMRVLYYRDARSYNRFQTATV-TEKGVEIEGPLSTET-NWDIAHMISGF 263
>At1g56450 [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 246
Score = 159 bits (401), Expect = 5e-39
Identities = 83/221 (37%), Positives = 138/221 (61%), Gaps = 11/221 (4%)
Query: 34 TQNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDM 93
T P +TGTS+++IKY +GV++A+D G+YGS LR+ N ER+ +G ++++G SG+ISD
Sbjct: 24 TLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDF 83
Query: 94 QYIQHLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTE 153
Q I LDE+ + +N D+ L P + YL+ VMY RR+K +PLWN +++GG +
Sbjct: 84 QEILRYLDELTLNDNM----WDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVK 139
Query: 154 DGKPFLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAILEAM 213
+GK +L V+++GV++ +ATGFG HLA P+LR ++ ++ + K + + M
Sbjct: 140 NGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILR-----DEWHADLSFEDGVKLLEKCM 194
Query: 214 KILYYRDARSSRKFSLAIIDNELGLNIEKDLQVENMSWEFA 254
++L YRD + K +A I E G+ + + ++ WEF+
Sbjct: 195 RVLLYRDRSAINKLQIAKITEE-GVTVSQPYSLKTY-WEFS 233
>7296763 [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 268
Score = 157 bits (398), Expect = 1e-38
Identities = 85/222 (38%), Positives = 141/222 (63%), Gaps = 10/222 (4%)
Query: 40 TGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQYIQHL 99
TGTSV+ I+Y++GV++AAD L +YGS+ R+ N ER+ KV N ++G SGD +D+Q I+
Sbjct: 56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRN 115
Query: 100 LDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTE-DGKPF 158
+D+ IE+ D+ ++KP + +++ V+Y RRS+++PL+ ++VGG + +G P+
Sbjct: 116 IDQKMIEDQ----CCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPY 171
Query: 159 LRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAILEAMKILYY 218
L V+L G +Y +ATGF HLA+PL+R+ ++D V A + I M++LYY
Sbjct: 172 LANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVE---ASELIRTCMEVLYY 228
Query: 219 RDARSSRKFSLAIIDNELGLNIEKDLQVENMSWEFAKDIRGY 260
RD R+ ++++ + G +E QV N +W FA+ I+GY
Sbjct: 229 RDTRNISQYTVGVCSVN-GCGVEGPFQV-NENWTFAETIKGY 268
>ECU05g0290 [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 235
Score = 125 bits (315), Expect = 5e-29
Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 26/233 (11%)
Query: 30 PKMNTQNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGD 89
PKM +TGT+V+S +Y +G+I+ AD G+YG L + + +R+ KVG T++G+SG+
Sbjct: 8 PKMRD---FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGE 64
Query: 90 ISDMQYIQHLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIV 149
ISDMQY+ L + E+N ++ P + + ++Y RSK+ PL ++ V
Sbjct: 65 ISDMQYLVKTLTILTQEDN---------RRIDPKGYHKMIQRILYSARSKISPLNLSVCV 115
Query: 150 GG----------TEDGKPFLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEK 199
GG T + L VN LG Y S + TG G +L LP LR V+ + E+
Sbjct: 116 GGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGRE--EE 173
Query: 200 VNLDVAKKAILEAMKILYYRDARSSRKFSLAIIDNELGLNIEKDLQVENMSWE 252
+ + A + EAM+IL YRD +S + + +D++ G++I Q++ +W+
Sbjct: 174 IAREEAIGLVEEAMRILCYRDCNASNEIQVGYVDDQ-GVHISDPYQIKT-NWD 224
>CE20761 [O] KOG0185 20S proteasome regulatory subunit beta type PSMB4/PRE4
Length = 236
Score = 112 bits (281), Expect = 4e-25
Identities = 63/232 (27%), Positives = 121/232 (52%), Gaps = 21/232 (9%)
Query: 34 TQNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDM 93
T NP TGTSVI+++Y GV+V D + +YG + R+ N R KV N ++ GD +D
Sbjct: 10 TLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADF 69
Query: 94 QYIQHLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTE 153
++Q++++ + + ++ + P + YL+S++Y +R K++P+WN ++V G E
Sbjct: 70 HWLQNVIERQVL------LWKRFDQDIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVE 123
Query: 154 D--------GKPFLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTE--KDVEKVNLD 203
+ PF+ + G Y +ATG GA LL + V+ E K E ++ +
Sbjct: 124 EEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAF----LLNQAVEDEWRKKGEDLSRE 179
Query: 204 VAKKAILEAMKILYYRDARSSRKFSLAIIDNELGLNIEKDLQVENMSWEFAK 255
A+ + +++++ Y D + +F + +D G+ + K+ ++ W A+
Sbjct: 180 EAEAVLRKSLELTLYHDCVADNEFEIGRVDATEGVVLGKEEKIIG-DWSIAE 230
>Hs4506201 [O] KOG0175 20S proteasome regulatory subunit beta type
PSMB5/PSMB8/PRE2
Length = 263
Score = 58.5 bits (140), Expect = 9e-09
Identities = 48/206 (23%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 38 IITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQYIQ 97
++ GT+ ++ K+ +GVIVAAD+ G+ + +++I++ P + ++G +D + +
Sbjct: 56 MLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWE 115
Query: 98 HLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTEDGKP 157
LL N+E++ + + L++++YQ + L ++ G + P
Sbjct: 116 RLL-----ARQCRIYELRNKERISVAAASKLLANMVYQYKGM--GLSMGTMICGWDKRGP 168
Query: 158 FLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAILEAMKILY 217
L YV+ G S T + G G+ A ++ + + +VE+ D+A++AI +A
Sbjct: 169 GLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQA-YDLARRAIYQAT---- 223
Query: 218 YRDARSSRKFSLAIIDNELGLNIEKD 243
YRDA S +L + + + + D
Sbjct: 224 YRDAYSGGAVNLYHVREDGWIRVSSD 249
>Hs4758970 [O] KOG0175 20S proteasome regulatory subunit beta type
PSMB5/PSMB8/PRE2
Length = 272
Score = 53.5 bits (127), Expect = 3e-07
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 33 NTQNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISD 92
N Q + GT+ ++ K+ +GVI A D+ + GS + ++I++ P + +SG +D
Sbjct: 60 NVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAAD 119
Query: 93 MQYIQHLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGT 152
QY + LL Y N E++ S + LS++M Q R + ++I G
Sbjct: 120 CQYWERLL-----AKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWD 173
Query: 153 EDGKPFLRYVNLLGVTYSSPTLATGFG 179
+ G P L YV+ G S +TG G
Sbjct: 174 KKG-PGLYYVDEHGTRLSGNMFSTGSG 199
>Hs22056396 [O] KOG0175 20S proteasome regulatory subunit beta type
PSMB5/PSMB8/PRE2
Length = 276
Score = 53.5 bits (127), Expect = 3e-07
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 33 NTQNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISD 92
N Q + GT+ ++ K+ +GVI A D+ + GS + ++I++ P + +SG +D
Sbjct: 64 NVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAAD 123
Query: 93 MQYIQHLLDEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGT 152
QY + LL Y N E++ S + LS++M Q R + ++I G
Sbjct: 124 CQYWERLL-----AKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWD 177
Query: 153 EDGKPFLRYVNLLGVTYSSPTLATGFG 179
+ G P L YV+ G S +TG G
Sbjct: 178 KKG-PGLYYVDEHGTRLSGNMFSTGSG 203
>SPAC4A8.13c [O] KOG0175 20S proteasome regulatory subunit beta type
PSMB5/PSMB8/PRE2
Length = 272
Score = 53.1 bits (126), Expect = 4e-07
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 14/216 (6%)
Query: 41 GTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQYIQHLL 100
GT+ ++ +Y +G++V D+ + G L+ +++I++ P + ++G +D Q+ + +L
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 101 DEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTEDGKPFLR 160
ME + N+E + S + LS++ Y + L ++ GT G L
Sbjct: 121 G-MECRLH----QLRNKELISVSAASKILSNITYSYKGY--GLSMGTMLAGTGKGGTALY 173
Query: 161 YVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAILEAMKILYYRD 220
Y++ G + G G+ A +L + ++ L +A+++I+ A +RD
Sbjct: 174 YIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEA-LYLAQRSIVAAT----HRD 228
Query: 221 ARSSRKFSLAIIDNELGLNIEKDLQVENMSWEFAKD 256
A S +L ID E G + V+++ WE AKD
Sbjct: 229 AYSGGSVNLYHID-ENGWVFHGNFDVDSLIWE-AKD 262
>ECU02g0340 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 205
Score = 49.7 bits (117), Expect = 4e-06
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 41 GTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQYIQHLL 100
G S++++ + GV + D S+ + R+ ++GP VG+ + D Q +
Sbjct: 9 GGSILAMASSKGVAIMCDKRLGMSSITVSKDFTRIHRIGPRLYVGLPAFVPDTQVLLR-- 66
Query: 101 DEMEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGG-TEDGKPFL 159
+I NY+ +++ +++P + +S ++Y +R P A IV G T DGKP++
Sbjct: 67 ---KIRKNYNLFRLEHQREMEPEELSSMISFLLYSKRE--TPYITAPIVAGLTSDGKPYI 121
Query: 160 RYVNLLG 166
++ +G
Sbjct: 122 SGMDCIG 128
>CE17564 [O] KOG0173 20S proteasome regulatory subunit beta type
PSMB7/PSMB10/PUP1
Length = 277
Score = 49.7 bits (117), Expect = 4e-06
Identities = 41/198 (20%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 40 TGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQYIQHL 99
TGT+++++ + G+++ AD+ G+++ + E++ K+ + +G +D+ + +
Sbjct: 45 TGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKM 104
Query: 100 LDE----MEIENNYDSAYADNEEQLKPSFVFEYLSSVMYQRRSKLDPLWNAIIVGGTEDG 155
L +E+ + Q K +F Y + +++GG +
Sbjct: 105 LSGNLRLLELNTGRKARVITALRQAK-QHLFNYQGYI-----------GAYLLIGGVDPT 152
Query: 156 KPFLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAILEAMKI 215
P L + G T + P A G G++ A+ +L + D + D+ K D A+K + A++
Sbjct: 153 GPHLYMCSANGTTMAFPFTAQGSGSYAAITILER--DFKVDMTK---DEAEKLVQRALEA 207
Query: 216 LYYRDARSSRKFSLAIID 233
+ D S +L II+
Sbjct: 208 GMHGDNASGNSLNLVIIE 225
>CE25941 [O] KOG0174 20S proteasome regulatory subunit beta type
PSMB6/PSMB9/PRE3
Length = 239
Score = 49.3 bits (116), Expect = 6e-06
Identities = 49/210 (23%), Positives = 93/210 (43%), Gaps = 19/210 (9%)
Query: 35 QNPIITGTSVISIKYNNGVIVAADNLGAYGSLLRFTNEERLIKVGPNTVVGVSGDISDMQ 94
Q I TGT++I+++YN GV+V D+ + GS + ++ + N VV SG +D Q
Sbjct: 17 QEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQ 76
Query: 95 YIQHLLDEMEIENNYDSAYADNEEQLKPSFVF---EYLSSVMYQRRSKLDPLWNAIIVGG 151
I +I + Y E KP ++ + +Y R +L + ++ G
Sbjct: 77 AI------ADIAKYHIDVYTMTEN--KPVTIYRSSQIFRQFLYNYREQLSA--SVLVAGW 126
Query: 152 TEDGKPFLRYVNLLGVTYSSPTLATGFGAHLALPLLRKLVDTEKDVEKVNLDVAKKAILE 211
E+ + + + G + A+G G+ ++ +D++ + L+ K + +
Sbjct: 127 DEELGGQVYAIPIGGFVSRQRSTASGSGS----TFVQGFLDSQWR-PNLTLEECKAIVKQ 181
Query: 212 AMKILYYRDARSSRKFSLAIIDNELGLNIE 241
A+ + +RD S LA+I N+ G E
Sbjct: 182 AVGLATFRDGSSGGVVRLAVI-NKAGSQFE 210
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,192,774
Number of Sequences: 60738
Number of extensions: 678643
Number of successful extensions: 1802
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 14
length of query: 265
length of database: 30,389,216
effective HSP length: 104
effective length of query: 161
effective length of database: 24,072,464
effective search space: 3875666704
effective search space used: 3875666704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)