ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV2946   suspect: LH   S     KOG2612  Function unknown                                               Predicted integral membrane protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV2946 998670  998960 97   
         (97 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPL047w [S] KOG2612 Predicted integral membrane protein               116   6e-27

>YPL047w [S] KOG2612 Predicted integral membrane protein
          Length = 99

 Score =  116 bits (290), Expect = 6e-27
 Identities = 51/94 (54%), Positives = 74/94 (78%)

Query: 4  SLTTDSVADSIYQNILTSIIQDIISRQTVKRKLLKLQFPDAKPYYADPSGTLDIHGKAKQ 63
          ++T DS+++ I  N+LT++IQDI++R+T +++LLK ++PD + YY DP+G+LDI+G  KQ
Sbjct: 5  TITIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQ 64

Query: 64 ADSAVYIECNVCGREVSGNRFAAHLVRCLSRGRR 97
           +S+ YI C  CGR+VS NR AAHL RCLSRG R
Sbjct: 65 QESSQYIHCENCGRDVSANRLAAHLQRCLSRGAR 98


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,327,185
Number of Sequences: 60738
Number of extensions: 185957
Number of successful extensions: 566
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 1
length of query: 97
length of database: 30,389,216
effective HSP length: 73
effective length of query: 24
effective length of database: 25,955,342
effective search space: 622928208
effective search space used: 622928208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)