ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2950 good K KOG3473 Transcription RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2950 1000732 1000445 -96
(96 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL046c [K] KOG3473 RNA polymerase II transcription elongation f... 95 2e-20
Hs5032161 [K] KOG3473 RNA polymerase II transcription elongation... 60 5e-10
7302473 [K] KOG3473 RNA polymerase II transcription elongation f... 59 9e-10
CE27039 [K] KOG3473 RNA polymerase II transcription elongation f... 58 2e-09
At5g59140 [K] KOG3473 RNA polymerase II transcription elongation... 57 4e-09
SPBC1861.07 [K] KOG3473 RNA polymerase II transcription elongati... 56 7e-09
CE07568 [K] KOG3473 RNA polymerase II transcription elongation f... 55 2e-08
Hs18547827 [K] KOG3473 RNA polymerase II transcription elongatio... 54 4e-08
Hs18576145 [K] KOG3473 RNA polymerase II transcription elongatio... 52 2e-07
>YPL046c [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 99
Score = 94.7 bits (234), Expect = 2e-20
Identities = 46/94 (48%), Positives = 67/94 (70%), Gaps = 1/94 (1%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLESSFIESQGTIKLEEFDTRILDKVIEYMEYSY 63
++LVS ++R AM SPTLK M+E F ES+G I+L++FD+ IL+K +EY+ Y+
Sbjct: 6 VTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNL 65
Query: 64 KYKD-ADDDVEVPEFNVSPDISLDLLLAADYLGI 96
KY ++DD E+PEF + ++SL+LLLAADYL I
Sbjct: 66 KYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99
>Hs5032161 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 112
Score = 60.1 bits (144), Expect = 5e-10
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLES--SFIESQ-GTIKLEEFDTRILDKVIEYME 60
+ L+SS G V R+ A+ S T+K ML F E++ + E + +L KV Y
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 61 YSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y +Y ++ E+PEF ++P+I+L+LL+AA++L
Sbjct: 79 YKVRYTNSS--TEIPEFPIAPEIALELLMAANFL 110
>7302473 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 117
Score = 59.3 bits (142), Expect = 9e-10
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLES--SFIESQGT-IKLEEFDTRILDKVIEYME 60
+ L+SS G V R+ A+ S T++ ML F E++ + E + +L KV Y
Sbjct: 24 VKLISSDGHEFVVKREHALTSGTIRAMLSGPGQFAENEANEVHFREIPSHVLQKVCMYFT 83
Query: 61 YSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y +Y ++ E+PEF ++P+I+L+LL+AA++L
Sbjct: 84 YKVRYTNSS--TEIPEFPIAPEIALELLMAANFL 115
>CE27039 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 124
Score = 58.2 bits (139), Expect = 2e-09
Identities = 30/94 (31%), Positives = 53/94 (55%), Gaps = 5/94 (5%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLESSFIESQG---TIKLEEFDTRILDKVIEYME 60
+ LVSS + R++A+ S T++ ML + ++ + E + +L KV +Y
Sbjct: 31 VKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVVYFREIPSHVLQKVCQYFA 90
Query: 61 YSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y +Y A E+PEF + PD++L+LL+AA++L
Sbjct: 91 YKVRYTHAA--TEIPEFPIPPDVALELLMAANFL 122
>At5g59140 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 112
Score = 57.0 bits (136), Expect = 4e-09
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 2 EEISLVSSTGDSRTVNRDVAMQSPTLKRMLES--SFIESQ-GTIKLEEFDTRILDKVIEY 58
E + L+S G ++R+ AM S T++ ML S F ES+ G + + T IL+K+ +Y
Sbjct: 3 ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62
Query: 59 M------------EYSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y Y Y + D + EF++ P+++L+L++AA+YL
Sbjct: 63 FYWSLQYSSCIVFNYCYAYVPSFDRGKETEFHIEPELTLELMMAANYL 110
>SPBC1861.07 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 97
Score = 56.2 bits (134), Expect = 7e-09
Identities = 30/95 (31%), Positives = 58/95 (60%), Gaps = 5/95 (5%)
Query: 2 EEISLVSSTGDSRTVNRDVAMQSPTLKRML-ESSFIESQ-GTIKLEEFDTRILDKVIEYM 59
E + L+S G + +++A S T++ +L E F E+Q + +L+KV EY+
Sbjct: 4 EYVRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYL 63
Query: 60 EYSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y+Y+YK+ +++P+F++ P++ L+LL+ A+YL
Sbjct: 64 HYNYRYKN---QLDIPKFDIPPEMVLELLVTAEYL 95
>CE07568 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 163
Score = 55.1 bits (131), Expect = 2e-08
Identities = 30/94 (31%), Positives = 52/94 (54%), Gaps = 6/94 (6%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLESSFIE---SQGTIKLEEFDTRILDKVIEYME 60
+ LVS+ + R+VAM S +L+ + + ++ + T+ +F + IL KV Y+
Sbjct: 71 VKLVSNDDHEFIIKREVAMTSKSLRELFANPTVDLAAANNTVYFSDFQSHILQKVCHYLA 130
Query: 61 YSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y KY+ + P F++ PDI++DLL AA+ L
Sbjct: 131 YKTKYRHSR---VAPPFDIPPDIAMDLLAAANEL 161
>Hs18547827 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 96
Score = 53.9 bits (128), Expect = 4e-08
Identities = 31/94 (32%), Positives = 53/94 (55%), Gaps = 5/94 (5%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLES--SFIESQ-GTIKLEEFDTRILDKVIEYME 60
+ L+ S G V R+ A+ S +K ML S F E++ + E + +L KV Y
Sbjct: 3 VKLIPSDGHEFIVKREHALISGMIKAMLNSPGQFAENETNEVNFREIPSYVLSKVCMYFT 62
Query: 61 YSYKYKDADDDVEVPEFNVSPDISLDLLLAADYL 94
Y +Y ++ E+PEF ++P+I+L+LL+A ++L
Sbjct: 63 YKVRYTNSS--TEIPEFPITPEIALELLVAVNFL 94
>Hs18576145 [K] KOG3473 RNA polymerase II transcription elongation factor
Elongin/SIII subunit elongin C
Length = 222
Score = 51.6 bits (122), Expect = 2e-07
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 4 ISLVSSTGDSRTVNRDVAMQSPTLKRMLES---SFIESQGTIKLEEFDTRILDKVIEYME 60
+ L+SS G V R+ A+ S T+K L S + + E +R+L KV Y
Sbjct: 3 VKLISSDGHEFIVKREHALTSGTIKTTLGGPGQSAVNETNEVNFREIPSRVLSKVCTYFM 62
Query: 61 YSYKYKDADDDVEVPEFNVSPDISLDLLL 89
Y +Y ++ EVPE ++P+I+L+LL+
Sbjct: 63 YKVRYPNSS--TEVPELPIAPEIALELLM 89
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.133 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,336,644
Number of Sequences: 60738
Number of extensions: 196275
Number of successful extensions: 547
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 9
length of query: 96
length of database: 30,389,216
effective HSP length: 72
effective length of query: 24
effective length of database: 26,016,080
effective search space: 624385920
effective search space used: 624385920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)