ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV2970 check: MH A KOG0127 RNA processing and modification Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV2970 1005079 1007133 685
(685 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 785 0.0
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 301 2e-81
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 179 1e-44
7291833 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 122 1e-27
At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 101 3e-21
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 79 3e-14
CE18105 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 78 4e-14
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 75 3e-13
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 71 5e-12
At4g24770 [R] KOG0118 FOG: RRM domain 71 5e-12
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 68 4e-11
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 67 1e-10
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 66 2e-10
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 66 2e-10
At5g50250 [R] KOG0118 FOG: RRM domain 66 2e-10
At2g35410 [R] KOG0118 FOG: RRM domain 65 3e-10
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 64 8e-10
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 63 1e-09
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 63 2e-09
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 63 2e-09
Hs14719414 [R] KOG0118 FOG: RRM domain 62 2e-09
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 5e-09
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 6e-09
At2g37220 [R] KOG0118 FOG: RRM domain 61 6e-09
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 60 8e-09
SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily) 60 1e-08
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 60 1e-08
Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 59 2e-08
CE11598 [R] KOG0118 FOG: RRM domain 59 2e-08
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 58 4e-08
SPAC328.05 [R] KOG0118 FOG: RRM domain 58 5e-08
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 58 5e-08
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 58 5e-08
Hs4502847 [R] KOG0118 FOG: RRM domain 57 9e-08
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 57 9e-08
YNL004w [R] KOG0118 FOG: RRM domain 57 1e-07
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 57 1e-07
Hs4504445 [R] KOG0118 FOG: RRM domain 56 2e-07
Hs14043070 [R] KOG0118 FOG: RRM domain 56 2e-07
Hs13650572 [R] KOG0118 FOG: RRM domain 56 2e-07
SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM... 56 2e-07
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 56 2e-07
At3g23830 [R] KOG0118 FOG: RRM domain 56 2e-07
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 56 2e-07
At3g52380 [R] KOG0118 FOG: RRM domain 55 3e-07
At1g17640 [R] KOG0118 FOG: RRM domain 55 3e-07
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 55 3e-07
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 55 4e-07
CE28911 [R] KOG0118 FOG: RRM domain 55 4e-07
Hs22049560 [R] KOG0118 FOG: RRM domain 55 5e-07
Hs17458873 [R] KOG0118 FOG: RRM domain 55 5e-07
Hs5803137 [R] KOG0118 FOG: RRM domain 54 8e-07
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 54 8e-07
CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily) 54 8e-07
At1g34140 [R] KOG0118 FOG: RRM domain 54 8e-07
Hs14043072 [R] KOG0118 FOG: RRM domain 54 1e-06
At5g40490 [R] KOG0118 FOG: RRM domain 54 1e-06
7290796 [R] KOG0118 FOG: RRM domain 53 1e-06
Hs17462157 [R] KOG0118 FOG: RRM domain 53 2e-06
Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 53 2e-06
Hs13654587 [R] KOG0118 FOG: RRM domain 53 2e-06
7290149 [R] KOG0118 FOG: RRM domain 53 2e-06
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 52 2e-06
Hs4504447 [R] KOG0118 FOG: RRM domain 52 2e-06
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 52 2e-06
At3g15010 [R] KOG0118 FOG: RRM domain 52 2e-06
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 52 3e-06
At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 5e-06
Hs17446941 [R] KOG0118 FOG: RRM domain 51 7e-06
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 50 9e-06
At4g39260 [R] KOG0118 FOG: RRM domain 50 9e-06
At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein 50 9e-06
At1g54080 [R] KOG0118 FOG: RRM domain 50 9e-06
>YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 685
Score = 785 bits (2028), Expect = 0.0
Identities = 401/616 (65%), Positives = 465/616 (75%), Gaps = 23/616 (3%)
Query: 9 DEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDT 68
D+GLD+KTLFVR +P + TDE+ +FFS F+PIKHAV+VKD SRGFGFVSFAVEDDT
Sbjct: 20 DDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDT 79
Query: 69 KTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNV---KDEEESKPEDD 125
K AL +ARKTKF G +LR+DIAKRR+RS+ + E S+ S + + +E+E + +
Sbjct: 80 KEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGE 139
Query: 126 NDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRIS 185
+ ++KGKPKLIIRNMPWSCRDP KLKKIFG YGTVVEATIPRKRDG+LCGFAFVTM +IS
Sbjct: 140 DSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKIS 199
Query: 186 NCKAAIEGTKDLKIDGRKVAVDFAIQKNRWEDYKNEHKELXXXXXXXXXXXXXXXXXXXX 245
NC+ A+E TKDLKIDGRKVAVDFA+QKNRWEDYK E+
Sbjct: 200 NCRIALENTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPEMNDKDDNESGNEDAEE----- 254
Query: 246 XXXXXXXXXXNQDDKEKEEKSDIVLDSDXXXXXXXXXXXQDTVKKNRKEDFSIFVRNVPY 305
N DD+E E + + D +N++EDFS+FVRNVPY
Sbjct: 255 ----------NHDDEEDENEEE-----DRQVDQASKNKESKRKAQNKREDFSVFVRNVPY 299
Query: 306 DATQESLERHFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYNDCLNNAPATGSTSL 365
DAT+ESL HF FG VKYALPVIDK TGLAKGTAFVAF+ + YN+C+ NAPA GSTSL
Sbjct: 300 DATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNAPAAGSTSL 359
Query: 366 LISDDVSPEYVYEGRVLAISPTLDRESAGRMFERNAEKRKEVLGKAPGEKDRRNLYLLNE 425
LI DDV PEYVYEGRVL+I+PTL RE AGRM E+NA KRKE LGKAPGEKDRRNLYLLNE
Sbjct: 360 LIGDDVMPEYVYEGRVLSITPTLVREDAGRMAEKNAAKRKEALGKAPGEKDRRNLYLLNE 419
Query: 426 GRIVAGSKLSQLLTPADMEVREKSYKLRVEQLKKNPTLHLSMTRLAIRNIPRAMTEKGLK 485
GR+V GSK++ LLT DME+REKSYKLRVEQLKKNP+LHLSMTRLAIRN+PRAM +K LK
Sbjct: 420 GRVVEGSKMADLLTNTDMEIREKSYKLRVEQLKKNPSLHLSMTRLAIRNLPRAMNDKALK 479
Query: 486 ALARKAVVEFAKEVNENKRHALNKEEIVRSTKEKYKFMSEEEIEAQKKKDKKQGIVRQSK 545
ALARKAVVEFA EV +RH L+KEEI+RSTKEKYKFM +EIEAQKKKDKK G+V+Q+K
Sbjct: 480 ALARKAVVEFATEVKNKERHPLSKEEIIRSTKEKYKFMGPDEIEAQKKKDKKSGVVKQAK 539
Query: 546 IIMEIKXXXXXXXXXXXFVEFRDHKAALMCLRWLNAHEVSRDEILEGLTDDEKKQLDADS 605
+IME+K FVEFRDHK ALM LRWLN H V+ DEILEGL DDEKKQ+D D
Sbjct: 540 VIMEVKGSTAGRSRGYGFVEFRDHKNALMGLRWLNCHAVTSDEILEGLNDDEKKQVDNDL 599
Query: 606 FKKRRLVVEFAIENAN 621
K RRL VEFAIEN+N
Sbjct: 600 GKGRRLCVEFAIENSN 615
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 301 bits (771), Expect = 2e-81
Identities = 200/639 (31%), Positives = 317/639 (49%), Gaps = 72/639 (11%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQ 74
TLFVR + F++ ++ NFFS PIKHAV+V + E G +RG+GFV+F++ +D + A +
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 75 ARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPK 134
+ K GR+LR+D A R+RS D +++K +P+
Sbjct: 66 LKNKKLHGRILRLDFATPRKRSE-----------------VDTDQNKAVKKTIRQDNRPR 108
Query: 135 LIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGT 194
LIIRN+PWS + P L+ F +G V E IP K GR+CGFAFV M + A+
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 195 KDLKIDGRKVAVDFAIQKNRWE-------DYKNEHKELXXXXXXXXXXXXXXXXXXXXXX 247
+IDGR +AVD+A+ K+ +E + E+KE
Sbjct: 169 NGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEE 228
Query: 248 XXXXXXXXNQDDKEKEEKSDIVLDSDXXXXXXXXXXXQDTVKKNRKEDFSIFVRNVPYDA 307
+ +EE S++ D ++ N + ++FVRN+ ++
Sbjct: 229 VDGHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFEC 288
Query: 308 TQESLERHFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYNDCLNNA---PATGST- 363
T++ L HF FGP+ YA V D T + G F+ FR E +CL A P T
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQLPTQEPTE 348
Query: 364 -------SLLI-----SDDVSPEYVYEGRVLAISPTLDRESAGRMFERNAEKRKEVLGKA 411
S+L+ +D VS ++ GR+L ++ + R+ A + +++ ++RK+ +GK
Sbjct: 349 AEKRFLPSVLVDEGIDTDSVSSRFLLHGRLLKVTSAVTRKEASDINQKSLQERKQKMGKG 408
Query: 412 PGEKDRRNLYLLNEGRIVAGSKLSQLLTPADMEVREKSYKLRVEQLKKNPTLHLSMTRLA 471
DRR+L+LLNEG+I A L L+ D +R +S R + L+KNPTLHLS+ RL+
Sbjct: 409 ---VDRRHLFLLNEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLS 465
Query: 472 IRNIPRAMTEKGLKALARKAVVEFAKEVNENKRHALNKEEIVRSTKEKYKFMSEEEIEA- 530
IRNI R + K L L R+A+ F +V++ R + +E EE ++
Sbjct: 466 IRNISRHIDPKILAMLGRQAIRGFMDDVSKGLRANITEE--------------EENLDKG 511
Query: 531 -QKKKDKKQGIVRQSKIIMEIKXXXXXXXXXXXFVEFRDHKAALMCLRWLNAHEVSRDEI 589
+ K+ K G+++Q+K+ E + F++F HK ALM LRWLN E++ +I
Sbjct: 512 HRLKRGKSGGVLKQAKV--ETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
Query: 590 LEG---------LTDDEKKQLDADSFKKRRLVVEFAIEN 619
++ + + + +D + + RRL+VEFAIEN
Sbjct: 570 IDAEIEWARKHKIPEPQLPNIDYND-RPRRLIVEFAIEN 607
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 179 bits (454), Expect = 1e-44
Identities = 151/537 (28%), Positives = 242/537 (44%), Gaps = 92/537 (17%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTALNQ 74
TLFV +P + E+ FSQ P+K +V + G A RGFG+V+F++ +D + AL +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 75 ARKTKFMGRLLRIDIAKRRERSRGK-KDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKP 133
T F G + + +AK++ R++ K K +E S P K E ++K D K
Sbjct: 65 I--TTFEGCKINVTVAKKKLRNKTKEKGKNENSECP-----KKEPKAKKAKVADK---KA 114
Query: 134 KLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEG 193
+LIIRN+ + C + LK +F +G V+E IPRK DG++ GF FV + A++G
Sbjct: 115 RLIIRNLSFKCSEDD-LKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKG 173
Query: 194 TKDLKIDGRKVAVDFAIQKNRWED------------YKNEHKELXXXXXXXXXXXXXXXX 241
+I GR VAVD+A+ K++++D ++++H+E
Sbjct: 174 MNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEEN 233
Query: 242 XXXXXXXXXXXXXXNQDDKEKE-----------------------------------EKS 266
+ +D+E+E E+S
Sbjct: 234 DDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEES 293
Query: 267 DIVLD------SDXXXXXXXXXXXQDTVKKNRK------EDFSIFVRNVPYDATQESLER 314
D + D SD Q + KK RK E ++F+RN+ +D+ +E L
Sbjct: 294 DSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGE 353
Query: 315 HFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYNDCLNNAPATGSTSLLISDDVSPE 374
FG +KY V+ +T +KG AF F +++A CL A L D
Sbjct: 354 LLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLD----- 408
Query: 375 YVYEGRVLAISPTLDRESAGRMFERNAEKRKEVLGKAPGEKDRRNLYLLNEGRIVAGSKL 434
GR L + + R+ A ++ K K+ G RNLYL EG I AG+K
Sbjct: 409 ----GRQLKVDLAVTRDEAAKL---QTTKVKKPTG-------TRNLYLAREGLIRAGTKA 454
Query: 435 SQLLTPADMEVREKSYKLRVEQLKKNPTLHLSMTRLAIRNIPRAMTEKGLKALARKA 491
++ ++ ADM RE+ ++L Q K+ + +S TRL + N+P+A+ +K L+ L A
Sbjct: 455 AEGVSAADMAKRER-FELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSA 510
>7291833 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1045
Score = 122 bits (307), Expect = 1e-27
Identities = 109/414 (26%), Positives = 177/414 (42%), Gaps = 49/414 (11%)
Query: 99 KKDADEVSSAPSVDNVKDEE----ESKPEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIF 154
K DA E S P K + E+ K + +LI+RN+ + + + L++ F
Sbjct: 238 KDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQKKRARLIVRNISYKSTEDS-LREHF 296
Query: 155 GLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKDLKIDGRKVAVDFAIQKNR 214
G +GT+ + I ++ DG+L G AFV I+ AI + ++ GRKV VD+A+ K+
Sbjct: 297 GQWGTLEDVHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDE 356
Query: 215 W------------EDYKNEHKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQDDKEK 262
+ + K E KE +D+++
Sbjct: 357 YVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDS 416
Query: 263 EEKSDIVLDSDXXXXXXXXXXXQDTVKKNRKEDFS--------IFVRNVPYDATQESLER 314
E D D D D R++ S +F++NVP+DA L +
Sbjct: 417 GESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRK 476
Query: 315 HFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYNDCLNNAPATGSTSLLISDDVSPE 374
FG V YA+ +G +KGTAFV F+++++ + CL E
Sbjct: 477 ACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCL---------------QAGTE 521
Query: 375 YVYEGRVLAISPTLDRESAGRMFERNAEKRKEVLGKAPGEKDRRNLYLLNEGRIVAGSKL 434
+ VL P L RE E +++ +E K KD RNLYL EG I+AG+K
Sbjct: 522 FKLMDEVLDPHPALSRE------EMKSKQSQE--NKKDDAKDSRNLYLAREGLIMAGAKA 573
Query: 435 SQLLTPADMEVREKSYKLRVEQLKKNPTLHLSMTRLAIRNIPRAMTEKGLKALA 488
+ ++ +DM R + +++ Q+ KN +S RL+I N+P+ + LK +A
Sbjct: 574 ADGVSASDMAKRHELEQVKT-QVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMA 626
>At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1003
Score = 101 bits (252), Expect = 3e-21
Identities = 80/294 (27%), Positives = 139/294 (47%), Gaps = 67/294 (22%)
Query: 294 EDF--SIFVRNVPYDATQESLERHFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYN 351
+DF ++F+RN+P+D T+E +++ F VFG V+ V+ K T +GTAFV F++ DA
Sbjct: 557 DDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASV 616
Query: 352 DCLNNAPATGSTSLLISDDVSPEYVYEGRVLAISPTLDRESAGRMFERNAEKRKEVLGKA 411
++ A +L+ +GR L + + +++A + + E++
Sbjct: 617 AAISAADTASGVGVLL----------KGRQLNVMRAVGKKAAKDIELKKTEEK------- 659
Query: 412 PGEKDRRNLYLLNEGRIVAGSKLSQLLTPADMEVREKSYKLRVEQLKKNPTLHLSMTRLA 471
D RNLYL EG+I+ + ++ ++ DM+ R + ++ +++ L ++P H+S TRL
Sbjct: 660 --NVDHRNLYLAKEGQILDDTPAAEGVSAEDMDKRRRLHENKMKML-QSPNFHVSRTRLV 716
Query: 472 IRNIPRAMTEKGLKALARKAVVEFAKEVNENKRHALNKEEIVRSTKEK-----YKFMSEE 526
I N+P++M K L L AV R+TK+K KF+ E
Sbjct: 717 IYNLPKSMNPKQLNRLLVDAVTS-------------------RATKQKPCIRQIKFLQNE 757
Query: 527 EIEAQKKKDKKQGIVRQSKIIMEIKXXXXXXXXXXXFVEFRDHKAALMCLRWLN 580
+ K+ +G+ FVEF +H+ AL+ LR LN
Sbjct: 758 KKGKVDTKNYSRGV---------------------AFVEFTEHEHALVALRVLN 790
Score = 55.5 bits (132), Expect = 3e-07
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTALNQ 74
T+ V G+P+ T+ + FS+ P++ +V + G RGF FV FA+++D A+
Sbjct: 21 TVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIEL 80
Query: 75 ARKTKFMGRLLRIDIAKRRE--RSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
+ GR + + A R + R K A+ +S + D++ S PE D + +
Sbjct: 81 KNGSTVGGRRITVKQAAHRPSLQERRTKAAEGISVPDNSQGQSDKDTSIPETDEKVSPPE 140
Query: 133 PKL 135
KL
Sbjct: 141 KKL 143
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 78.6 bits (192), Expect = 3e-14
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 3 DKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSF 62
D++ D ++V+ + TD+ FSQ+ + V+++DG G SRGFGFV+F
Sbjct: 190 DERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNF 249
Query: 63 AVEDDTKTA------LNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKD 116
++ K A L K F+G+ L+ D +RRE + +K +D + P++
Sbjct: 250 CNPENAKKAMESLCGLQLGSKKLFVGKALKKD--ERREMLK-QKFSDNFIAKPNM----- 301
Query: 117 EEESKPEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGF 176
L ++N+ S + T+L++IFG YG +V A + +GR GF
Sbjct: 302 --------------RWSNLYVKNLSESMNE-TRLREIFGCYGQIVSAKVMCHENGRSKGF 346
Query: 177 AFVTMNRISNCKAAIEGTKDLKIDGRKVAVDFAIQK 212
FV + K A +DG+ + V A +K
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
Score = 51.2 bits (121), Expect = 5e-06
Identities = 49/200 (24%), Positives = 78/200 (38%), Gaps = 35/200 (17%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
L+V+ + T F F I +V++ G S+GFGFV F E +A +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN-GQSKGFGFVQFDTEQSAVSARSALH 172
Query: 77 KTKFMGRLLRI-DIAKRRERSR--GKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKP 133
+ G+ L + + ER+ G +D+ V ++ V D+
Sbjct: 173 GSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDD---------------- 216
Query: 134 KLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEG 193
C L +F YGTV + R GR GF FV N K A+E
Sbjct: 217 ----------C-----LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 194 TKDLKIDGRKVAVDFAIQKN 213
L++ +K+ V A++K+
Sbjct: 262 LCGLQLGSKKLFVGKALKKD 281
>CE18105 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 406
Score = 78.2 bits (191), Expect = 4e-14
Identities = 77/321 (23%), Positives = 131/321 (39%), Gaps = 30/321 (9%)
Query: 134 KLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLC-GFAFVTMNRISNCKAAI 191
+LIIRN+P+ + L+ + G VE +P R D + C GF F+ ++ +
Sbjct: 96 RLIIRNLPFKTKKED-LQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGR 154
Query: 192 EGTKDLKIDGRKVAVDFAIQKNRWEDYKNEHKELXXXXXXXXXXXXXXXXXXXXXXXXXX 251
E K+ GR VA D+A+ K+ +E +E K+
Sbjct: 155 EFFNTNKVLGRSVAADWALDKDTYETNAHEEKQHLKKVVKVEKDEKPEEKSKKFDEEEGE 214
Query: 252 XXXXNQDDK----EKEEKSDIVLDSDXXXXXXXXXXXQDTVKKNRKEDFSIFVRNVPYDA 307
+D E E S+ D + Q ++ E +F+RN+ YD
Sbjct: 215 EESEGSEDGSEAFEASEASEDDEDDEEPAKKPKNPKAQLKTDESITEGKVVFLRNLSYDT 274
Query: 308 TQESLERHFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYNDCLNNAPATGSTSLLI 367
+E ++ FG + A+ K++G +KGTAFV F + ++C+
Sbjct: 275 KEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCI------------- 321
Query: 368 SDDVSPEYVYEGRVLAISPTLDRESAGRMFERNAEKRKEVLGKAPGEKDRRNLYLLNEGR 427
+ V + + R++ + + R+ A A+ KE L K P KD+RNL L G
Sbjct: 322 -EGVEDGVIIDNRLVKANLAIPRKEA-------ADMEKEKLTKVP--KDKRNLRLARFGL 371
Query: 428 IVAGSKLSQLLTPADMEVREK 448
I G+ + ++ D RE+
Sbjct: 372 IRDGTAAAAGMSKDDAAKRER 392
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 75.5 bits (184), Expect = 3e-13
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
L+V+ + E+TDE+F F++F PI A + KD +G +GFGFV++ +D A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 77 KTKFMGRLLRIDIA-KRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
++ G L + A K+ ER K E + E+ +K + N L
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEA--------YRLEKMAKYQGVN--------L 324
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTK 195
++N+ S D KL++ F YGT+ A + R +G+ GF FV + AI
Sbjct: 325 FVKNLDDSV-DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 196 DLKIDGRKVAVDFAIQKN 213
+ G+ + V A +K+
Sbjct: 384 QQIVAGKPLYVAIAQRKD 401
Score = 64.7 bits (156), Expect = 4e-10
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
+F++ + + ++ + FS F I + I D G S+GFGFV F E K A++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK---P 133
G LL + E+ AP + S+ E D+ L + K
Sbjct: 188 -----GMLL---------------NGQEIYVAPHL--------SRKERDSQLEETKAHYT 219
Query: 134 KLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEG 193
L ++N+ D + +++F +G +V A++ + DG+L GF FV + + A+E
Sbjct: 220 NLYVKNINSETTD-EQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 194 TKDLKIDGRKVAVDFAIQKN 213
D +++G K+ V A +KN
Sbjct: 279 LNDSELNGEKLYVGRAQKKN 298
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 71.2 bits (173), Expect = 5e-12
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 16/196 (8%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++V+ + +TD++ N F ++ I AV++KDGEG S+GFGFV+F DD A+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
KF + + A+ KK E + E K + N L
Sbjct: 277 GHKFDDKEWYVGRAQ-------KKSERETELRVRYEQNLKEAADKFQSSN--------LY 321
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
++N+ S D KLK+IF +GTV + + R +G G FV A+
Sbjct: 322 VKNLDPSISD-EKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSG 380
Query: 197 LKIDGRKVAVDFAIQK 212
I+ + + V A +K
Sbjct: 381 KMIESKPLYVAIAQRK 396
Score = 56.6 bits (135), Expect = 1e-07
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 44/208 (21%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
+F++ + + + FS F I + D G S+G+GFV +A E+ + A+ +
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 77 ------KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNV--KDEEESKPEDDNDL 128
K ++G LR R+ER D ++ NV K+ ES +DD
Sbjct: 186 GMLLNDKQVYVGPFLR-----RQER-------DSTANKTKFTNVYVKNLAESTTDDD--- 230
Query: 129 MKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCK 188
LK FG YG + A + + +G+ GF FV +
Sbjct: 231 ---------------------LKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 189 AAIEGTKDLKIDGRKVAVDFAIQKNRWE 216
A+E K D ++ V A +K+ E
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERE 297
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 71.2 bits (173), Expect = 5e-12
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
LFV + ++ + F Q ++ A ++ + E SRGFGFV+ + D+ +TA+ +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
+ GRLL ++ A R S+PE + + ++
Sbjct: 212 NRYDLNGRLLTVNKAAPR-------------------------GSRPERAPRVYEPAFRV 246
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRD-GRLCGFAFVTMNRISNCKAAIEGT 194
+ N+PW D +L+++F +G VVEA + R+ GR GF FVTM+ + AI
Sbjct: 247 YVGNLPWDV-DNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 195 KDLKIDGRKVAVDFAIQK 212
++GR + V+ A ++
Sbjct: 306 DGQNLEGRAIRVNVAEER 323
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 68.2 bits (165), Expect = 4e-11
Identities = 50/196 (25%), Positives = 87/196 (43%), Gaps = 16/196 (8%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++++ + E T++EF + F QF I +VKD RGFGFV++A + + A+++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
++ G+ L + A+ KK E + +K E+ +K + N L
Sbjct: 323 DKEYKGKKLYVGRAQ-------KKHEREEELRKRYEQMKLEKMNKYQGVN--------LF 367
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
I+N+ D +LK F +GT+ A I G+ GF FV A+
Sbjct: 368 IKNLQDEV-DDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQ 426
Query: 197 LKIDGRKVAVDFAIQK 212
+ G+ + V A +K
Sbjct: 427 RMLAGKPLYVALAQRK 442
Score = 54.3 bits (129), Expect = 6e-07
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 1 MSDKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFV 60
M +K+ K +G++L F++ + E DE FS F I A I+ D +G S+GFGFV
Sbjct: 353 MKLEKMNKYQGVNL---FIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFV 409
Query: 61 SFAVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDA 102
+ ++ A+ + + G+ L + +A+R+E R + +A
Sbjct: 410 CYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEA 451
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 66.6 bits (161), Expect = 1e-10
Identities = 53/198 (26%), Positives = 88/198 (43%), Gaps = 35/198 (17%)
Query: 15 KTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQ 74
KTL + + + +T+E F + + IK + ++ G S+G+ F+ FA +D K ALN
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 75 ARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPK 134
K + GR +R+++ +G + + S PS
Sbjct: 543 CNKREIEGRAIRLEL-------QGPRGSPNARSQPS----------------------KT 573
Query: 135 LIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGT 194
L ++ + + T LK+ F G+V + + G GF FV N + KAA E
Sbjct: 574 LFVKGLSEDTTEET-LKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 195 KDLKIDGRKVAVDFAIQK 212
+D +IDG KV +D+A K
Sbjct: 631 EDGEIDGNKVTLDWAKPK 648
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 65.9 bits (159), Expect = 2e-10
Identities = 49/208 (23%), Positives = 88/208 (41%), Gaps = 14/208 (6%)
Query: 5 KVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAV 64
K + + GL +FV+ E+ FS+F I AV++ D +G +GFGFV+FA
Sbjct: 228 KELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFAD 287
Query: 65 EDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPED 124
+D A+ + + G ++ + + +++S + A +K E + +
Sbjct: 288 QDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEA-----LKQERVQRYQG 342
Query: 125 DNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRI 184
N L ++N+ D L+ F +GT+ A + +GR GF FV +
Sbjct: 343 VN--------LYVKNIEEDLND-DGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKP 393
Query: 185 SNCKAAIEGTKDLKIDGRKVAVDFAIQK 212
AA+ I + + V A +K
Sbjct: 394 EEATAAVTDMNSKMIGAKPLYVALAQRK 421
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 65.9 bits (159), Expect = 2e-10
Identities = 49/208 (23%), Positives = 88/208 (41%), Gaps = 14/208 (6%)
Query: 5 KVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAV 64
K + + GL +FV+ E+ FS+F I AV++ D +G +GFGFV+FA
Sbjct: 228 KELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFAD 287
Query: 65 EDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPED 124
+D A+ + + G ++ + + +++S + A +K E + +
Sbjct: 288 QDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEA-----LKQERVQRYQG 342
Query: 125 DNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRI 184
N L ++N+ D L+ F +GT+ A + +GR GF FV +
Sbjct: 343 VN--------LYVKNIEEDLND-DGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKP 393
Query: 185 SNCKAAIEGTKDLKIDGRKVAVDFAIQK 212
AA+ I + + V A +K
Sbjct: 394 EEATAAVTDMNSKMIGAKPLYVALAQRK 421
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 65.9 bits (159), Expect = 2e-10
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
LFV +P++ + F Q ++ + ++ + + SRGFGFV+ + ++ + A+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
+ GR L ++ R RG S+PE + ++
Sbjct: 175 NSFEVNGRRLTVN----RAAPRG---------------------SRPERQPRVYDAAFRI 209
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRD-GRLCGFAFVTMNRISNCKAAIEGT 194
+ N+PW D +L+++F +G VV+A + R+ GR GF FV M+ + AI
Sbjct: 210 YVGNLPWDV-DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 195 KDLKIDGRKVAVDFAIQKNR 214
++GR + V+ A ++ R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>At2g35410 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 65.1 bits (157), Expect = 3e-10
Identities = 47/212 (22%), Positives = 94/212 (44%), Gaps = 23/212 (10%)
Query: 3 DKKVIKDEGLDLKT-LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVS 61
++K + + +LK LFV +P+ + + F Q + + I++ +G +RGF FV+
Sbjct: 82 EEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVT 141
Query: 62 FAVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESK 121
A ++ + A+++ + GR++ + A+R ++ K D S AP
Sbjct: 142 MASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPG----------- 190
Query: 122 PEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGL--YGTVVEATIPRKRDGRLCGFAFV 179
+ KL + N+ W R T L+++F + V + +GR G+ FV
Sbjct: 191 --------DTRHKLYVSNLAWKARS-THLRELFTAADFNPVSARVVFADPEGRSSGYGFV 241
Query: 180 TMNRISNCKAAIEGTKDLKIDGRKVAVDFAIQ 211
+ + AI +I GR + + F+++
Sbjct: 242 SFATREEAENAITKLNGKEIMGRPITLKFSLR 273
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 63.9 bits (154), Expect = 8e-10
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQ 74
+++V PF++T+EE GNFFS I + IV D E G RGF F+ FA E + A+ Q
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 75 ARKTKFMGRLLRIDIAKR 92
+F GR LR+++A +
Sbjct: 66 MNGAEFNGRPLRVNLANK 83
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 63.2 bits (152), Expect = 1e-09
Identities = 47/196 (23%), Positives = 86/196 (42%), Gaps = 16/196 (8%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++V+ + +TD+E F Q+ I AV+++DG+G SR FGFV+F +D A+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
KF + + A+ KK E+ + + + +K + N L
Sbjct: 287 GKKFDDKEWYVGKAQ-------KKSERELELSRRYEQGSSDGGNKFDGLN--------LY 331
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
++N+ + D KL+++F +GT+ + R G G FV + S +
Sbjct: 332 VKNLDDTVTD-EKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 197 LKIDGRKVAVDFAIQK 212
+ G+ + V A +K
Sbjct: 391 KMVGGKPLYVALAQRK 406
Score = 55.5 bits (132), Expect = 3e-07
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
LFV+ + ++ FS I + D G SRG+GFV F ED K A+ +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 77 ------KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMK 130
K F+G LR K+E ES D MK
Sbjct: 196 GKVLNDKQIFVGPFLR----------------------------KEERESAA----DKMK 223
Query: 131 GKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAA 190
+ ++N+ + D +LK FG YG++ A + R DG+ F FV + A
Sbjct: 224 FT-NVYVKNLSEATTDD-ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARA 281
Query: 191 IEGTKDLKIDGRKVAVDFAIQKNRWE 216
+E K D ++ V A +K+ E
Sbjct: 282 VEALNGKKFDDKEWYVGKAQKKSERE 307
Score = 54.3 bits (129), Expect = 6e-07
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 8 KDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDD 67
K +GL+L +V+ + TDE+ F++F I +++D G S+G GFV+F+ +
Sbjct: 324 KFDGLNL---YVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASE 380
Query: 68 TKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPS 110
LN+ G+ L + +A+R+E R K A P+
Sbjct: 381 ASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPA 423
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 62.8 bits (151), Expect = 2e-09
Identities = 42/156 (26%), Positives = 78/156 (49%), Gaps = 17/156 (10%)
Query: 7 IKDEGLD--LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFA 63
++D +D L+++FV +P+E+T+E+ + FS+ P+ +V D E G +G+GF +
Sbjct: 6 VRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 64 VEDDTKTALNQARKTKFMGRLLRIDIA---KRRERSRGKKDADEVSSAPSVDNVKDEEES 120
++ +A+ +F GR LR+D A K +E + V +P + + E+
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAP 125
Query: 121 K----------PEDDNDLMKGKPKLIIRNMPWSCRD 146
+ PE +LMK + KL ++N P R+
Sbjct: 126 ESISKAVASLPPEQMFELMK-QMKLCVQNSPQEARN 160
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 62.8 bits (151), Expect = 2e-09
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++V+ +P E TD+E F ++ I AV++KD G SR FGFV+F + A+ +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
+L + R++ K D +E ++ + E + + ++G L
Sbjct: 287 GISLGEDVLYVG------RAQKKSDREE--------ELRRKFEQERISRFEKLQGS-NLY 331
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
++N+ S D KLK++F YG V + G GF FV SN + A+ K+
Sbjct: 332 LKNLDDSVND-EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVA---YSNPEEALLAMKE 387
Query: 197 L--KIDGRK 203
+ K+ GRK
Sbjct: 388 MNGKMIGRK 396
Score = 53.5 bits (127), Expect = 1e-06
Identities = 48/207 (23%), Positives = 83/207 (39%), Gaps = 38/207 (18%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
+F++ + ++ FS F I + D G S+G+GFV F E+ + A+++
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 77 ------KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMK 130
K F+G +R R++R+R E + PS NV
Sbjct: 194 GMLLNDKQVFVGHFVR-----RQDRAR-----SESGAVPSFTNV---------------- 227
Query: 131 GKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAA 190
++N+P D +LKK FG YG + A + + + G F FV A
Sbjct: 228 -----YVKNLPKEITD-DELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 281
Query: 191 IEGTKDLKIDGRKVAVDFAIQKNRWED 217
+E + + + V A +K+ E+
Sbjct: 282 VEKMNGISLGEDVLYVGRAQKKSDREE 308
>Hs14719414 [R] KOG0118 FOG: RRM domain
Length = 283
Score = 62.4 bits (150), Expect = 2e-09
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
+FV G+ F++ + + FFSQ+ +K IV D G S+G+GFV+F ++D + L +A
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94
Query: 77 KTKFMGRLLRIDIAKRRER 95
K + + L I A R+++
Sbjct: 95 KLNYKDKKLNIGPAIRKQQ 113
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 61.2 bits (147), Expect = 5e-09
Identities = 50/183 (27%), Positives = 77/183 (41%), Gaps = 18/183 (9%)
Query: 10 EGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTK 69
E + ++V+ + +DEE F +F VI++DGEG S+GFGFV+F DD
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 70 TALNQARKTKFMGRLLRIDIA-KRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDL 128
A++ F + + A K+ ER K E S + D K + N
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAAD--------KSQGSN-- 328
Query: 129 MKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCK 188
L ++N+ S D KL++ F +GT+ + R G G FV +
Sbjct: 329 ------LYVKNLDESVTD-DKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEAT 381
Query: 189 AAI 191
AI
Sbjct: 382 RAI 384
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 60.8 bits (146), Expect = 6e-09
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 15 KTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQ 74
KTL + + + +T+E F + + IK + ++ G S+G+ F+ FA +D K ALN
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 75 ARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPK 134
K + GR +R+++ +G + + S PS
Sbjct: 543 CNKREIEGRAIRLEL-------QGPRGSPNARSQPS----------------------KT 573
Query: 135 LIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGT 194
L ++ + + T LK+ F G+V + + G GF FV N + K A+E
Sbjct: 574 LFVKGLSEDTTEET-LKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKEAME-- 628
Query: 195 KDLKIDGRKVAVDFAIQK 212
D +IDG KV +D+A K
Sbjct: 629 -DGEIDGNKVTLDWAKPK 645
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 60.8 bits (146), Expect = 6e-09
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 12/200 (6%)
Query: 13 DLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDG-EGASRGFGFVSFAVEDDTKTA 71
DLK LFV +PF + F ++ ++ D G SRGFGFV+ + + + A
Sbjct: 90 DLK-LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 72 LNQARKTKFMGRLLRIDIA-KRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMK 130
Q + GR LR++ +R G S S S N
Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN---- 204
Query: 131 GKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRD-GRLCGFAFVTMNRISNCKA 189
++ + N+ W D L+ +F G VVEA + RD GR GF FVT + +
Sbjct: 205 ---RVYVGNLSWGV-DDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260
Query: 190 AIEGTKDLKIDGRKVAVDFA 209
AI+ +DGR++ V A
Sbjct: 261 AIKSLDGADLDGRQIRVSEA 280
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 60.5 bits (145), Expect = 8e-09
Identities = 47/200 (23%), Positives = 84/200 (41%), Gaps = 17/200 (8%)
Query: 13 DLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTAL 72
+ ++++ E DE FSQF +++D G S+GFGFVS+ +D A+
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
+ + G+++ + A+ KK + + +K E S+ + N
Sbjct: 249 EEMNGKEISGKIIFVGRAQ-------KKVERQAELKRKFEQLKQERISRYQGVN------ 295
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIE 192
L I+N+ D KL+K F +G++ A + DGR GF FV + A+
Sbjct: 296 --LYIKNLD-DTIDDEKLRKEFSPFGSITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 193 GTKDLKIDGRKVAVDFAIQK 212
+ + + V A +K
Sbjct: 352 EMNGRIVGSKPLYVALAQRK 371
>SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 833
Score = 60.1 bits (144), Expect = 1e-08
Identities = 48/206 (23%), Positives = 83/206 (39%), Gaps = 29/206 (14%)
Query: 10 EGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVI------VKDGEGASRGFGFVSFA 63
E LD T++V+ + F + EEF F AVI + G+ S GFGFV F
Sbjct: 614 ESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFK 673
Query: 64 VEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPE 123
+ A++ G L I ++ + + V+ ++ SKP+
Sbjct: 674 DKASAVAAMHAMNGFVLDGHKLEIKLSHQ--------------GVDAAAEVRKQDSSKPK 719
Query: 124 DDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNR 183
K++I+N+P+ ++ + G YG + +P+K D GFAF
Sbjct: 720 GT--------KILIKNLPFEATKKD-VQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVT 770
Query: 184 ISNCKAAIEGTKDLKIDGRKVAVDFA 209
A+ K+ + GR + + +A
Sbjct: 771 AREAANAMRALKNTHLLGRHLVLQYA 796
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 60.1 bits (144), Expect = 1e-08
Identities = 30/79 (37%), Positives = 48/79 (59%), Gaps = 1/79 (1%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQ 74
+++V PF++T+++ GN+FSQ + + IV D E G RGF FV F E + A++Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 75 ARKTKFMGRLLRIDIAKRR 93
F GR LR+++A+ R
Sbjct: 65 FNGVDFNGRALRVNLAQNR 83
>Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 268
Score = 58.9 bits (141), Expect = 2e-08
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 31/171 (18%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTAL 72
L+ LF+ G+ FE+TDE + F Q+ + V+++D SRGFGFV++A ++ A+
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
N AR K GR++ A RE S+ + DA V +K++ E
Sbjct: 73 N-ARPHKVDGRVVEPKRAVSREDSQ-RPDAHLTVKKIFVGGIKEDTEEH----------- 119
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLCGFAFVTMN 182
L+ F YG + I R G+ GFAFVT +
Sbjct: 120 ----------------HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
>CE11598 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 58.9 bits (141), Expect = 2e-08
Identities = 33/88 (37%), Positives = 53/88 (59%), Gaps = 2/88 (2%)
Query: 9 DEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDD 67
D L+ LF+ G+ ++TDE+ GN+FSQ+ P+ A++++D SRGFGFV+FA
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 68 TKTALNQARKTKFMGRLLRIDIAKRRER 95
++A+N R K G+ + A RE+
Sbjct: 124 AESAMND-RPHKLGGKTVDSKRAIPREQ 150
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 58.2 bits (139), Expect = 4e-08
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 7 IKDEGLD--LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFA 63
++D +D L+++FV +P+E+T+E+ + FS+ + +V D E G +G+GF +
Sbjct: 6 VRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 64 VEDDTKTALNQARKTKFMGRLLRIDIA---KRRERSRGKKDADEVSSAPSVDNVKDEEES 120
++ +A+ +F GR LR+D A K +E + A + +P D + E+
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAP 125
Query: 121 K----------PEDDNDLMKGKPKLIIRNMPWSCRD 146
+ PE +LMK + KL ++N R+
Sbjct: 126 ESITRAVASLPPEQMFELMK-QMKLCVQNSHQEARN 160
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 57.8 bits (138), Expect = 5e-08
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 16/199 (8%)
Query: 15 KTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQ 74
+ ++V + ++ E F Q + + I+ G S+G + ++ ++ +TA+
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKT 125
Query: 75 ARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESK-------PEDDND 127
KFMGRL+ I R +R + + S + N KD E + N
Sbjct: 126 LSNQKFMGRLVYI----REDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNP 181
Query: 128 LMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNC 187
L L+ N+ W LK +F G+V+ A I ++GR G V M+ +
Sbjct: 182 LYSFPRTLLPYNVRWQ-----DLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEA 236
Query: 188 KAAIEGTKDLKIDGRKVAV 206
AI+ + GR + V
Sbjct: 237 MHAIQMLHNTDFMGRTLEV 255
Score = 51.6 bits (122), Expect = 4e-06
Identities = 46/188 (24%), Positives = 74/188 (38%), Gaps = 22/188 (11%)
Query: 22 VPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQARKTKFM 81
+P+ ++ + F Q + A I + EG SRG G V + + A+ T FM
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 82 GRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLIIRNMP 141
GR L + R +R K D V A D + + N+P
Sbjct: 250 GRTLEV----RLDRFAHHKIEDLVYHAYPHGPCSD-----------------CIYVGNLP 288
Query: 142 WSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKDLKIDG 201
W+ D L +F G+V+ A I + GR GF V ++ ++IE + G
Sbjct: 289 WATSD-RNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGG 347
Query: 202 RKVAVDFA 209
R + + +A
Sbjct: 348 RPLQLSYA 355
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 57.8 bits (138), Expect = 5e-08
Identities = 47/209 (22%), Positives = 95/209 (44%), Gaps = 28/209 (13%)
Query: 8 KDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGA----SRGFGFVSFA 63
++E L TLF++ + F++T+E+ FS+ +K I K A S GFGFV +
Sbjct: 723 EEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYR 782
Query: 64 VEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPE 123
+ + AL Q + G L + I++R ++ P+V + ++ + +
Sbjct: 783 KPEQAQKALKQLQGHVVDGHKLEVRISER-------------ATKPAVTLARKKQVPRKQ 829
Query: 124 DDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLC--GFAFVTM 181
+ K+++RN+P+ +++++F +G + +P+K G GF FV
Sbjct: 830 TTS-------KILVRNIPFQAHS-REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 881
Query: 182 NRISNCKAAIEG-TKDLKIDGRKVAVDFA 209
+ K A + GR++ +++A
Sbjct: 882 LTKQDAKRAFNALCHSTHLYGRRLVLEWA 910
Score = 55.5 bits (132), Expect = 3e-07
Identities = 46/180 (25%), Positives = 80/180 (43%), Gaps = 12/180 (6%)
Query: 2 SDKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVS 61
++K + E T+ +RG PF T++ F + P+ IV++ G G+ FV
Sbjct: 281 TEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYIFVD 339
Query: 62 FAVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESK 121
F+ E++ K AL + + GR + + K ++G S + +EEE
Sbjct: 340 FSNEEEVKQAL-KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDL 398
Query: 122 PEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIP-RKRDGRLCGFAFVT 180
E +L +RN+P++ + L+K+F YG + E P + GFAF+T
Sbjct: 399 AESG--------RLFVRNLPYTSTE-EDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 57.8 bits (138), Expect = 5e-08
Identities = 47/209 (22%), Positives = 95/209 (44%), Gaps = 28/209 (13%)
Query: 8 KDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGA----SRGFGFVSFA 63
++E L TLF++ + F++T+E+ FS+ +K I K A S GFGFV +
Sbjct: 723 EEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYR 782
Query: 64 VEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPE 123
+ + AL Q + G L + I++R ++ P+V + ++ + +
Sbjct: 783 KPEQAQKALKQLQGHVVDGHKLEVRISER-------------ATKPAVTLARKKQVPRKQ 829
Query: 124 DDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLC--GFAFVTM 181
+ K+++RN+P+ +++++F +G + +P+K G GF FV
Sbjct: 830 TTS-------KILVRNIPFQAHS-REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 881
Query: 182 NRISNCKAAIEG-TKDLKIDGRKVAVDFA 209
+ K A + GR++ +++A
Sbjct: 882 LTKQDAKRAFNALCHSTHLYGRRLVLEWA 910
Score = 55.5 bits (132), Expect = 3e-07
Identities = 46/180 (25%), Positives = 80/180 (43%), Gaps = 12/180 (6%)
Query: 2 SDKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVS 61
++K + E T+ +RG PF T++ F + P+ IV++ G G+ FV
Sbjct: 281 TEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYIFVD 339
Query: 62 FAVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESK 121
F+ E++ K AL + + GR + + K ++G S + +EEE
Sbjct: 340 FSNEEEVKQAL-KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDL 398
Query: 122 PEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIP-RKRDGRLCGFAFVT 180
E +L +RN+P++ + L+K+F YG + E P + GFAF+T
Sbjct: 399 AESG--------RLFVRNLPYTSTE-EDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 57.0 bits (136), Expect = 9e-08
Identities = 37/93 (39%), Positives = 50/93 (52%), Gaps = 7/93 (7%)
Query: 9 DEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGA-SRGFGFVSFAVEDD 67
DEG LFV G+ F++ ++ FS++ I V+VKD E SRGFGFV+F DD
Sbjct: 4 DEG----KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 68 TKTALNQARKTKFMGRLLRIDIAKRR--ERSRG 98
K A+ GR +R+D A + RSRG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 57.0 bits (136), Expect = 9e-08
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQ 74
+++V VP++ T+EE GN+F+ + + IV D E G RGF FV F+ E + A+ Q
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 75 ARKTKFMGRLLRIDIAKR 92
F GR LR++ A +
Sbjct: 67 LNGVAFNGRNLRVNYANK 84
>YNL004w [R] KOG0118 FOG: RRM domain
Length = 429
Score = 56.6 bits (135), Expect = 1e-07
Identities = 53/193 (27%), Positives = 80/193 (40%), Gaps = 23/193 (11%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQA 75
++FV + ++ST E+ FFSQ + A I+ G RG G V F DD A+ Q
Sbjct: 137 SIFVGNLTYDSTPEDLTEFFSQIGKVVRADII-TSRGHHRGMGTVEFTNSDDVDRAIRQY 195
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKP-- 133
FM R + + + P +N+K E K D +L +
Sbjct: 196 DGAFFMDRKIFV----------------RQDNPPPSNNIK---ERKALDRGELRHNRKTH 236
Query: 134 KLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEG 193
++I++N+P S + LK IF G V A + DG G V+ I + AIE
Sbjct: 237 EVIVKNLPASV-NWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEK 295
Query: 194 TKDLKIDGRKVAV 206
I+G + V
Sbjct: 296 YNGYSIEGNVLDV 308
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 56.6 bits (135), Expect = 1e-07
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++V+ + DE+ FF + I ++ +G S+GFGFV+F + + A+ QA
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV-QAL 243
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
K MG + +A+ ++++ +++ +K + E + ++ + G L
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQE------------LKRKFEELKQKRHESVFGV-NLY 290
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
++N+ + D +L+ F YG + A + +GR GF FV N S A+
Sbjct: 291 VKNLDDTI-DDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNG 349
Query: 197 LKIDGRKVAVDFAIQK 212
+ + + V A +K
Sbjct: 350 RVVGSKPLYVALAQRK 365
Score = 54.3 bits (129), Expect = 6e-07
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 30/212 (14%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
+F++ + ++ + FS F I + D +G S+G+GFV F E+ T++++
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
G+ ++ + K R +K+ E A NV + ++ DD
Sbjct: 152 GMLLNGK--KVYVGKFIPRKEREKELGE--KAKLFTNVYVKNFTEDFDDE---------- 197
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGT-- 194
KLK+ F YG + + K DG+ GF FV +AA++
Sbjct: 198 ------------KLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 195 KDLKIDGRKVAVDFAIQK-NRWEDYKNEHKEL 225
KD+ +G+ + V A +K R ++ K + +EL
Sbjct: 246 KDMG-EGKSLYVARAQKKAERQQELKRKFEEL 276
>Hs4504445 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 56.2 bits (134), Expect = 2e-07
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTAL 72
L+ LF+ G+ FE+TDE + F Q+ + V+++D SRGFGFV++A ++ A+
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
N AR K GR++ A RE S+ + A V +K++ E
Sbjct: 73 N-ARPHKVDGRVVEPKRAVSREDSQ-RPGAHLTVKKIFVGGIKEDTEEH----------- 119
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLCGFAFVTMN 182
L+ F YG + I R G+ GFAFVT +
Sbjct: 120 ----------------HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
>Hs14043070 [R] KOG0118 FOG: RRM domain
Length = 372
Score = 56.2 bits (134), Expect = 2e-07
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTAL 72
L+ LF+ G+ FE+TDE + F Q+ + V+++D SRGFGFV++A ++ A+
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
N AR K GR++ A RE S+ + A V +K++ E
Sbjct: 73 N-ARPHKVDGRVVEPKRAVSREDSQ-RPGAHLTVKKIFVGGIKEDTEEH----------- 119
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLCGFAFVTMN 182
L+ F YG + I R G+ GFAFVT +
Sbjct: 120 ----------------HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
>Hs13650572 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 56.2 bits (134), Expect = 2e-07
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTAL 72
L+ LF+ G+ FE+TDE + F Q+ + V+++D SRGFGFV++A ++ A+
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
N AR K GR++ A RE S+ + A V +K++ E
Sbjct: 73 N-ARPHKVDGRVVEPKRAVSREDSQ-RPGAHLTVKKIFVGGIKEDTEEH----------- 119
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLCGFAFVTMN 182
L+ F YG + I R G+ GFAFVT +
Sbjct: 120 ----------------HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
>SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 55.8 bits (133), Expect = 2e-07
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 7 IKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDG-EGASRGFGFVSFAVE 65
+ +E D +T+FV + T E +FF Q P++ A IV+D G S+G +V F E
Sbjct: 232 LSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE 291
Query: 66 DDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDD 125
D + A+ + K + +G + + + + E++R ++A E++ A S +
Sbjct: 292 DSVQAAIALSGK-RLLGLPVIVQLTE-AEKNRKAREAAELARAASAEIPFH--------- 340
Query: 126 NDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRIS 185
+L + N+ ++ D +K IF +G + + R R GF ++
Sbjct: 341 --------RLCVSNIHFNLTD-EDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPI 391
Query: 186 NCKAAIEGTKDLKIDGRKVAV 206
+ + A+E + GR + V
Sbjct: 392 SARNALEKMNGFDLAGRNMRV 412
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 55.8 bits (133), Expect = 2e-07
Identities = 48/196 (24%), Positives = 87/196 (43%), Gaps = 20/196 (10%)
Query: 16 TLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQ 74
T+FV + + D+ G F ++ I A ++ DG+ G S+G+G+V F + K A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 75 ARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPK 134
+ GR++ +D++ R A+ A ++ S+P D
Sbjct: 324 NGTKEIDGRMVNLDLSNPR-------PANPQPYAQQRAGNFGDQLSEPSD---------T 367
Query: 135 LIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPR-KRDGRLCGFAFVTMNRISNCKAAIEG 193
+ + N+ ++ + L FG G + +P + GRL GF +VT + I + K +E
Sbjct: 368 VFVGNLSFNATE-DDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 194 TKDLKIDGRKVAVDFA 209
I GR +DF+
Sbjct: 427 NGHF-IAGRPCRLDFS 441
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/78 (35%), Positives = 43/78 (54%), Gaps = 1/78 (1%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
LFV G+ + + D F+ F + A ++ D E G SRGFGFVSF+ ED A+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 76 RKTKFMGRLLRIDIAKRR 93
+ GR +R+++A R
Sbjct: 97 DGKELNGRQIRVNLATER 114
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 55.8 bits (133), Expect = 2e-07
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 21/189 (11%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++V+ +P E ++E F +F I AV+++D G SR FGFV+F + +A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE--- 287
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
K G L D+ + + +E+ + + E+S+ + L
Sbjct: 288 --KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN----------LY 335
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
++N+ S D KLK++F YG V + + G GF FV SN + A+ +
Sbjct: 336 LKNLDDSV-DDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA---YSNPEEALRALSE 391
Query: 197 L--KIDGRK 203
+ K+ GRK
Sbjct: 392 MNGKMIGRK 400
Score = 55.1 bits (131), Expect = 4e-07
Identities = 48/207 (23%), Positives = 81/207 (38%), Gaps = 38/207 (18%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
+F++ + ++ FS F I + D G S+G+GFV F E+ + A+++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 77 ------KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMK 130
K F+G +R R+ER+R DE P N +K
Sbjct: 198 GMLMNDKQVFVGHFIR-----RQERAR------------------DENTPTPRFTNVYVK 234
Query: 131 GKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAA 190
PK I +L+K FG +G + A + R + G F FV +A
Sbjct: 235 NLPKEI---------GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASA 285
Query: 191 IEGTKDLKIDGRKVAVDFAIQKNRWED 217
+E + + + V A +K+ E+
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREE 312
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 55.5 bits (132), Expect = 3e-07
Identities = 47/201 (23%), Positives = 89/201 (43%), Gaps = 21/201 (10%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDG-EGASRGFGFVSFAVEDDTKTALNQA 75
L+V +P+ T E F + + IV D SRGFGFV+ ++ K A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKP-K 134
++ GR ++++ E RG ++ + +K D+N P K
Sbjct: 178 NSSQIGGRTVKVNFP---EVPRGGEN--------------EVMRTKIRDNNRSYVDSPHK 220
Query: 135 LIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRD-GRLCGFAFVTMNRISNCKAAIEG 193
+ N+ W+ LK FG V+ A + +R+ GR GF F++ N ++A+
Sbjct: 221 VYAGNLGWNLTSQG-LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 194 TKDLKIDGRKVAVDFAIQKNR 214
++++GR + ++ A ++ +
Sbjct: 280 MNGVEVEGRALRLNLASEREK 300
>At1g17640 [R] KOG0118 FOG: RRM domain
Length = 369
Score = 55.5 bits (132), Expect = 3e-07
Identities = 54/203 (26%), Positives = 86/203 (41%), Gaps = 31/203 (15%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDG-EGASRGFGFVSFAVEDDTKTALNQA 75
LFV GV +E+T E F N+F +F + +VI+ D G RGFGFV+FA + L +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEED 127
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
++D+ +R RG KD D +K +++ K+
Sbjct: 128 HVIDDR----KVDL--KRTLPRGDKDTD----------IKAVSKTR------------KI 159
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIP-RKRDGRLCGFAFVTMNRISNCKAAIEGT 194
+ +P + +LK F +YG ++E I GR GF FVT +
Sbjct: 160 FVGGLP-PLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 195 KDLKIDGRKVAVDFAIQKNRWED 217
K ++ ++V + A K D
Sbjct: 219 KVHELGDKQVEIKRAEPKRTGRD 241
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 55.5 bits (132), Expect = 3e-07
Identities = 35/117 (29%), Positives = 63/117 (52%), Gaps = 5/117 (4%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTAL 72
++++FV +P+E+T+E+ FS+ P+ +V D E G +GFGF + ++ +A+
Sbjct: 15 MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAM 74
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLM 129
+ GR LR+D A E+SR + ++ P V+N E +PED +L+
Sbjct: 75 RNLNGYEIGGRTLRVDNA-CTEKSR--MEMQQLLQGPQVENPYG-EPCEPEDAPELI 127
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 55.1 bits (131), Expect = 4e-07
Identities = 45/213 (21%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 13 DLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTAL 72
+ ++++ + DE + F +F P ++ D G S+GFGFVSF +D + A+
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
++ + G+ + + A+ KK + + + +K + ++ + N
Sbjct: 249 DEMNGKELNGKQIYVGRAQ-------KKVERQTELKRTFEQMKQDRITRYQVVN------ 295
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIE 192
L ++N+ D +L+K F +GT+ A + GR GF FV + A+
Sbjct: 296 --LYVKNLDDGI-DDERLRKAFSPFGTITSAKV-MMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 193 GTKDLKIDGRKVAVDFAIQKNRWEDY-KNEHKE 224
+ + + V A +K + Y NE+ +
Sbjct: 352 EMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
>CE28911 [R] KOG0118 FOG: RRM domain
Length = 394
Score = 55.1 bits (131), Expect = 4e-07
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 8 KDEGLDLKTLFVRGVPFESTDEEFGNFFS-QFSPIKHAVIVKDGE-GASRGFGFVSFAVE 65
K+ G D+ +FV +PFE T++ FFS Q P++ IV+D + G +GF FV+F +
Sbjct: 240 KEFGKDM-AIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQD 298
Query: 66 DDTKTALN---------QARKTKFM--GRLLRIDIAKRRERSRGKKDADEVSSA--PSVD 112
AL+ R TK M G L +I AK+R S GKK+ +E++
Sbjct: 299 SSVSLALSMETIKMEKRDLRITKVMKKGHLTKIQTAKKR-TSHGKKNQNEITGKLHKFKF 357
Query: 113 NVKDEEESKPEDDNDLMKGKPKLIIR 138
+ K E ++ D L K K I +
Sbjct: 358 STKKERTTEQNDRRALKKSAKKAIAK 383
>Hs22049560 [R] KOG0118 FOG: RRM domain
Length = 222
Score = 54.7 bits (130), Expect = 5e-07
Identities = 32/89 (35%), Positives = 51/89 (56%), Gaps = 2/89 (2%)
Query: 10 EGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDT 68
E L+ LF+ G+ FE+T+E + F Q+ + V+++D SRGFGFV++A ++
Sbjct: 9 EPKQLRKLFIGGLSFETTNESLRSHFEQWGTLMDCVVMRDPNTKCSRGFGFVTYATVEEV 68
Query: 69 KTALNQARKTKFMGRLLRIDIAKRRERSR 97
A+N AR K GR++ A RE S+
Sbjct: 69 DAAMN-ARPHKVDGRVVESKRAVSREDSQ 96
>Hs17458873 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 54.7 bits (130), Expect = 5e-07
Identities = 39/128 (30%), Positives = 63/128 (48%), Gaps = 3/128 (2%)
Query: 10 EGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDT 68
E L+ LF+ G+ FE++DE + Q+ + V+++D SRGFGFV + ++
Sbjct: 9 EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV 68
Query: 69 KTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDL 128
A+N AR K GR++ A RE S+ + A V +K++ E P D
Sbjct: 69 DAAMN-ARPHKMGGRVVEPKTAVSREDSQ-RPGAYLTVKKIFVGGIKEDTEEHPLRDYYE 126
Query: 129 MKGKPKLI 136
GK ++I
Sbjct: 127 QYGKTEVI 134
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 53.9 bits (128), Expect = 8e-07
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
LFV G+ F + ++ + FS F PI V+VKD E SRGFGF++F + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 76 RKTKFMGRLLRIDIAKRRER 95
GR +R+D A + R
Sbjct: 68 NGESLDGRQIRVDHAGKSAR 87
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 53.9 bits (128), Expect = 8e-07
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 12 LDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTA 71
L+ ++V+ +P + ++ + FSQF + +++D G SR FGFV+F ++ + A
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 72 LNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKG 131
+ + GRLL A++R + + +K E +D +G
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQ--------------NELKRRFEQMKQDRLRRYQG 293
Query: 132 KPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR 169
L ++N+ S D KL+K F YG + A R+R
Sbjct: 294 -VNLYVKNLDDSI-DDDKLRKEFSPYGVITSAKKRRQR 329
>CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 872
Score = 53.9 bits (128), Expect = 8e-07
Identities = 55/234 (23%), Positives = 94/234 (39%), Gaps = 31/234 (13%)
Query: 2 SDKKVIKDEGLDLKTLFVRGVPFESTD--------EEFGNFFSQFSPIKHAVIVKDGEGA 53
S KK + E TLFV+ + F++TD + +G+ K + +
Sbjct: 628 SSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPL 687
Query: 54 SRGFGFVSFAVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDN 113
S GFGFV F D KTAL + G L + I+ R +G E
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENADKGALKRKE--------- 738
Query: 114 VKDEEESKPEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRK--RDG 171
VK +E+ + KL++RN+P+ +++ +F +G V IP+K +
Sbjct: 739 VKQKEQGE----------CTKLLVRNLPFEA-SVKEVETLFETFGAVKTIRIPKKPGQKQ 787
Query: 172 RLCGFAFVTMNRISNCKAAIEG-TKDLKIDGRKVAVDFAIQKNRWEDYKNEHKE 224
+ GF FV A + + GR++ +++A E+ + + E
Sbjct: 788 QHRGFGFVDFISADEAHRAFDSLVHSTHLYGRRLVLEWAKDDETVEELREKTAE 841
Score = 50.8 bits (120), Expect = 7e-06
Identities = 40/161 (24%), Positives = 65/161 (39%), Gaps = 20/161 (12%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
L V+ +P T+++ FF ++ I A + EG RGF FV F E AL ++
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Query: 77 KTKFMGRLLRI-------DIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLM 129
+T F + L + D K R S+ KD+ ++EE+ P ++
Sbjct: 65 QTFFNSKKLTVEECRPFGDANKPRAWSKYAKDSSAYKRTHG-----EKEEANPGKSDETE 119
Query: 130 KGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRD 170
+ PK +D K + G VVE + +D
Sbjct: 120 EPAPK--------KQKDDAKFDQFLEAKGVVVEKEVKLSKD 152
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 53.9 bits (128), Expect = 8e-07
Identities = 41/153 (26%), Positives = 73/153 (46%), Gaps = 17/153 (11%)
Query: 9 DEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDT 68
D+ ++V+ + +TD + F +F I AV++KDGEG SR FGFV+F +
Sbjct: 113 DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAA 172
Query: 69 KTALNQARKTKFMGRLLRIDIAKRR-ERSRGKKDADEVSSAPSVDNVKDEEESKPEDDND 127
TA+ + + L + A+R+ R+ K E+ ++D + K +
Sbjct: 173 VTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKI-----IRDMKTRKGMN--- 224
Query: 128 LMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTV 160
L ++N+ S D TKL+++F +GT+
Sbjct: 225 -------LYVKNLDDSV-DNTKLEELFSEFGTI 249
>Hs14043072 [R] KOG0118 FOG: RRM domain
Length = 353
Score = 53.5 bits (127), Expect = 1e-06
Identities = 36/113 (31%), Positives = 57/113 (49%), Gaps = 3/113 (2%)
Query: 8 KDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVED 66
K E + LF+ G+ FE+T+E N++ Q+ + V+++D SRGFGFV+F+
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 67 DTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEE 119
+ A+ AR GR++ A RE S GK A V +K++ E
Sbjct: 74 EVDAAM-AARPHSIDGRVVEPKRAVAREES-GKPGAHVTVKKLFVGGIKEDTE 124
>At5g40490 [R] KOG0118 FOG: RRM domain
Length = 423
Score = 53.5 bits (127), Expect = 1e-06
Identities = 29/81 (35%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
Query: 15 KTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTALN 73
K +FV G+P D+EF FF QF +K I++D G SRGFGFV++ ED L
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 74 QARKTKFMGRLLRIDIAKRRE 94
+ + + G + I A+ ++
Sbjct: 190 KGNRIELSGTQVEIKKAEPKK 210
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 53.1 bits (126), Expect = 1e-06
Identities = 49/187 (26%), Positives = 77/187 (40%), Gaps = 36/187 (19%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
L V +P + TD E F PI I++D + G S G+ FV F E D++ A+
Sbjct: 87 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 146
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
+ L++ A+ P +++KD L
Sbjct: 147 NGITVRNKRLKVSYAR-----------------PGGESIKDTN----------------L 173
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIPR-KRDGRLCGFAFVTMNRISNCKAAIEGT 194
+ N+P + D +L IFG YG++V+ I R K GR G AFV N+ + AI
Sbjct: 174 YVTNLPRTITDD-QLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 232
Query: 195 KDLKIDG 201
++ +G
Sbjct: 233 NNVIPEG 239
>Hs17462157 [R] KOG0118 FOG: RRM domain
Length = 163
Score = 52.8 bits (125), Expect = 2e-06
Identities = 32/101 (31%), Positives = 55/101 (53%), Gaps = 4/101 (3%)
Query: 1 MSDKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGF 59
+ K E L+ LF+ + FE+ DE + F Q+ + V+++D SRGFGF
Sbjct: 28 LKSKSESPKEPEQLRKLFIGELSFETADESLRSHFEQWGMLMDCVVMRDPNTKCSRGFGF 87
Query: 60 VSFAVEDDTKTALNQARKTKFMGRLL--RIDIAKRRERSRG 98
V++A ++ A+N AR K GR++ + D+ +R ++RG
Sbjct: 88 VTYATVEEVDAAMN-ARPHKVDGRVVEPKSDLKRRFSKNRG 127
>Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 52.8 bits (125), Expect = 2e-06
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTAL 72
L+ LF+ G+ FE+TDE + F Q + V+++D S GFGFV++A + + A+
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKCSTGFGFVTYATVKEVEAAM 72
Query: 73 NQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGK 132
N AR K GR++ A RE S+ + A V +K++ E
Sbjct: 73 N-ARPQKVDGRVVEPKRAVSREDSQ-RPGAHLTVKKIFVGGIKEDTEEH----------- 119
Query: 133 PKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLCGFAFVTMN 182
L+ F YG + I R G+ GFAFVT +
Sbjct: 120 ----------------HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
>Hs13654587 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 52.8 bits (125), Expect = 2e-06
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 31/181 (17%)
Query: 4 KKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSF 62
K E L+ LF+ G+ FE+TDE + F Q+ + V+++D SRGFGFV++
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 63 AVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKP 122
A ++ A+N K GR++ A RE S+ + A V +K++ E
Sbjct: 63 ATVEEVDAAMN-TTPHKVDGRVVEPKRAVSREDSQ-RPGAHLTVKKIFVGGIKEDTEEH- 119
Query: 123 EDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKR-DGRLCGFAFVTM 181
L+ F YG + I R G+ GFAFVT
Sbjct: 120 --------------------------HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
Query: 182 N 182
+
Sbjct: 154 D 154
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 52.8 bits (125), Expect = 2e-06
Identities = 48/187 (25%), Positives = 77/187 (40%), Gaps = 36/187 (19%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
L + +P + TD E N FS PI I++D + G S G+GFV + E D++ A+ +
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
+ L++ A+ P ++KD L
Sbjct: 155 NGFYVRNKRLKVSYAR-----------------PGGQSIKD----------------TNL 181
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIPR-KRDGRLCGFAFVTMNRISNCKAAIEGT 194
+ N+ + D L +IF YG +V+ I R K GR G AFV N+ + AI+
Sbjct: 182 YVINLSRNIND-DMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKAL 240
Query: 195 KDLKIDG 201
+ +G
Sbjct: 241 NNTVPEG 247
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 4 KKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSF 62
+ + ++E +FV GVP + T+EEF NFF+QF + A ++ D + G RGFGFV++
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 63 AVEDDTKTALNQ 74
E + ++Q
Sbjct: 296 ENESAVEATMSQ 307
>Hs4504447 [R] KOG0118 FOG: RRM domain
Length = 341
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 15 KTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKD-GEGASRGFGFVSFAVEDDTKTALN 73
+ LF+ G+ FE+T+E N++ Q+ + V+++D SRGFGFV+F+ + A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 67
Query: 74 QARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEE 119
AR GR++ A RE S GK A V +K++ E
Sbjct: 68 AARPHSIDGRVVEPKRAVAREES-GKPGAHVTVKKLFVGGIKEDTE 112
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 52.4 bits (124), Expect = 2e-06
Identities = 43/196 (21%), Positives = 83/196 (41%), Gaps = 15/196 (7%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQAR 76
++V+ E F++F I ++ EG S+GFGFV+FA ++ +TA+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQALH 273
Query: 77 KTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKLI 136
+ G L++ + + +++S + +K + E + +G L
Sbjct: 274 DSTIEGTDLKLHVCRAQKKSERHAE------------LKKKHEQHKAERMQKYQG-VNLY 320
Query: 137 IRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIEGTKD 196
++N+ + D LKK F YG + A + +GR GF FV + +A+
Sbjct: 321 VKNLDETV-DDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNS 379
Query: 197 LKIDGRKVAVDFAIQK 212
+ + + V A +K
Sbjct: 380 KMVCSKPLYVAIAQRK 395
>At3g15010 [R] KOG0118 FOG: RRM domain
Length = 404
Score = 52.4 bits (124), Expect = 2e-06
Identities = 52/209 (24%), Positives = 87/209 (40%), Gaps = 35/209 (16%)
Query: 5 KVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDG-EGASRGFGFVSFA 63
++ D + + LF+RG+ ++T E + FS + ++ A+++ D G S+G+GFV+F
Sbjct: 65 RLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFM 124
Query: 64 VEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPE 123
D AL + K K GR+ +A + G + AD
Sbjct: 125 HVDGALLALKEPSK-KIDGRVTVTQLAASGNQGTGSQIAD-------------------- 163
Query: 124 DDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIP-RKRDGRLCGFAFVTMN 182
K+ + N+P+ +L F YG V E + K G+ GFA
Sbjct: 164 ------ISMRKIYVANVPFD-MPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYK 216
Query: 183 RISNCKAAIEGTKDLKIDGR----KVAVD 207
+AA+ + IDG+ K+AVD
Sbjct: 217 TAEGAQAALADPVKV-IDGKHLNCKLAVD 244
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 52.0 bits (123), Expect = 3e-06
Identities = 51/213 (23%), Positives = 90/213 (41%), Gaps = 29/213 (13%)
Query: 2 SDKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHA-VIVKDGEGASRGFGFV 60
S+KK +E + T+FV + + DE F + A VI + G SRG+G+V
Sbjct: 155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYV 214
Query: 61 SFAVEDDTKTALNQARKTKFMGRLLRIDIAKRR---ERSRGKKDADEVSSAPSVDNVKDE 117
F + + A+ + + + GR + D++ + R KK D
Sbjct: 215 DFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGD-------------- 260
Query: 118 EESKPEDDNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLYGTVVEATIP-RKRDGRLCGF 176
S+P D L + N+ ++ D + ++F +G VV IP + GF
Sbjct: 261 TPSEPSD---------TLFLGNLSFNA-DRDAIFELFAKHGEVVSVRIPTHPETEQPKGF 310
Query: 177 AFVTMNRISNCKAAIEGTKDLKIDGRKVAVDFA 209
+V + + + K A++ + ID R V +DF+
Sbjct: 311 GYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
>At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 599
Score = 51.2 bits (121), Expect = 5e-06
Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 28/208 (13%)
Query: 15 KTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALNQ 74
KTLFV +P+E+ +FF + + ++ + +G G GFV FA ++ + AL +
Sbjct: 55 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQK 114
Query: 75 ARKTKFMGRLLRIDIAKRR----------ERSRGKKDADEVSSAPSVDNVKDEEESKPED 124
+ +D+A ++ + KD + S P +E+E P
Sbjct: 115 KNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPI-----EEDERPPNS 169
Query: 125 DNDLMKGKPKLIIRNMPWSCRDPTKLKKIFGLY---GTVVEATIPRKRDGRLCGFAFVTM 181
++ L + N+ TK+ IF + G VV + +G+ G+ FV
Sbjct: 170 VEEV------LFVANL----SPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEF 219
Query: 182 NRISNCKAAIEGTKDLKIDGRKVAVDFA 209
K A+E + K+ +D A
Sbjct: 220 ASADETKKALENKNGEYLHDHKIFIDVA 247
>Hs17446941 [R] KOG0118 FOG: RRM domain
Length = 192
Score = 50.8 bits (120), Expect = 7e-06
Identities = 36/123 (29%), Positives = 63/123 (50%), Gaps = 4/123 (3%)
Query: 14 LKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGEGASRGFGFVSFAVEDDTKTALN 73
++ L++RG+ FE+TDE F Q+ + + +SRGFGFV+ A ++ + A+N
Sbjct: 69 VRKLYIRGLSFETTDESLMGHFEQWGRL--TLTDYPNTNSSRGFGFVTNATVEEVEAAMN 126
Query: 74 QARKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKP 133
AR K GR+++ A RE S+ + V +K++ E + D+ GK
Sbjct: 127 -ARPHKVNGRVVKPKRAVSREDSQ-RAGVHLTVKKVFVGGIKEDTEEHHQRDDFRQFGKT 184
Query: 134 KLI 136
++I
Sbjct: 185 EVI 187
>Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 351
Score = 50.4 bits (119), Expect = 9e-06
Identities = 35/147 (23%), Positives = 68/147 (45%), Gaps = 13/147 (8%)
Query: 1 MSDKKVIKDEGLDLKTLFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGF 59
++DK E D +F+ G+P+E T+ + FSQ+ I + +V+D + G S+GF F
Sbjct: 22 VADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCF 81
Query: 60 VSFAVEDDTKTALNQARKTKFMGRLLRIDIAKRRERSRGKKDADEV------------SS 107
+ + + T A++ K GR +R+D + ++ D+V +
Sbjct: 82 LCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTP 141
Query: 108 APSVDNVKDEEESKPEDDNDLMKGKPK 134
+PS+ ++E+ + D + K K
Sbjct: 142 SPSLSESSEDEKPTKKHKKDKKEKKKK 168
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 50.4 bits (119), Expect = 9e-06
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 18 FVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQAR 76
FV G+ + + DE+ FSQF + + I+ D E G SRGFGFV+F E + A+ +
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 77 KTKFMGRLLRIDIAKRRERSRG 98
+ GR++ ++ A+ R G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGG 90
>At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 674
Score = 50.4 bits (119), Expect = 9e-06
Identities = 25/59 (42%), Positives = 36/59 (60%)
Query: 297 SIFVRNVPYDATQESLERHFGVFGPVKYALPVIDKETGLAKGTAFVAFRSEDAYNDCLN 355
+IFV NV + AT++SL RHF FG V A V D TG G+A++ F ++A + L+
Sbjct: 517 TIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 50.4 bits (119), Expect = 9e-06
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 3/177 (1%)
Query: 17 LFVRGVPFESTDEEFGNFFSQFSPIKHAVIVKDGE-GASRGFGFVSFAVEDDTKTALNQA 75
+FV + E TD + FS F+ A ++ D + G SRGFGFVSF + D +TA+N+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 76 RKTKFMGRLLRIDIAKRRERSRGKKDADEVSSAPSVDNVKDEEESKPEDDNDLMKGKPKL 135
R +R + A + K + + S + N E+ + + D + P+
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTN-GSSEDGRELSNEDAPENNPQF 268
Query: 136 IIRNMPWSCRDPTKLKKIFGLYGTVVEATIPRKRDGRLCGFAFVTMNRISNCKAAIE 192
+ + T+L + L+ T+ I R R GF FV N AI+
Sbjct: 269 TTVYVGNLSPEVTQL-DLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQ 324
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,160,114
Number of Sequences: 60738
Number of extensions: 1423142
Number of successful extensions: 8943
Number of sequences better than 1.0e-05: 73
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 8557
Number of HSP's gapped (non-prelim): 349
length of query: 685
length of database: 30,389,216
effective HSP length: 113
effective length of query: 572
effective length of database: 23,525,822
effective search space: 13456770184
effective search space used: 13456770184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)