ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIV2970.1   suspect: Pn  R     KOG4407   General function prediction only                               Predicted Rho GTPase-activating protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV2970.1 1005221 1005042 -60  
         (60 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE26357 [R] KOG4407 Predicted Rho GTPase-activating protein            28   2.3  
CE06007_1 [J] KOG1247 Methionyl-tRNA synthetase                        27   5.2  
Hs5454074 [K] KOG1878 Nuclear receptor coregulator SMRT/SMRTER c...    27   6.8  

>CE26357 [R] KOG4407 Predicted Rho GTPase-activating protein
          Length = 1388

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 2/45 (4%)

Query: 14  KKLPNSSSVDSNGTPRTNNVFRSRPSS--LITFLSLITDILSTNL 56
           ++  ++SSVDSN       + R+RP S  L T  S+  D+LS+++
Sbjct: 235 RQTSSNSSVDSNHNEAMKMIRRARPKSYVLATSASMNEDVLSSSI 279


>CE06007_1 [J] KOG1247 Methionyl-tRNA synthetase
          Length = 754

 Score = 26.9 bits (58), Expect = 5.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 1   MTITACLIGENWEKKLPNSSSVD 23
           ++IT C++G+NW K   N  +V+
Sbjct: 299 LSITKCVLGDNWTKWWKNPENVE 321


>Hs5454074 [K] KOG1878 Nuclear receptor coregulator SMRT/SMRTER contains
            Myb-like domains
          Length = 2517

 Score = 26.6 bits (57), Expect = 6.8
 Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 5/29 (17%)

Query: 17   PNSSSVDSNG-----TPRTNNVFRSRPSS 40
            P+ SSV S G     TP TN V+  RPSS
Sbjct: 2428 PSVSSVHSEGDCNRRTPLTNRVWEDRPSS 2456


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,734,825
Number of Sequences: 60738
Number of extensions: 116399
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 30,389,216
effective HSP length: 36
effective length of query: 24
effective length of database: 28,202,648
effective search space: 676863552
effective search space used: 676863552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)