ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3033 good A KOG0953 RNA processing and modification Mitochondrial RNA helicase SUV3, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3033 1026586 1028838 751
(751 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL029w [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box sup... 718 0.0
SPAC637.11 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box ... 359 1e-98
At5g39840 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box s... 324 3e-88
Hs4507315 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box s... 258 2e-68
At4g14790 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box s... 246 9e-65
CE19689 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box sup... 241 2e-63
7296874 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box sup... 182 2e-45
>YPL029w [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 737
Score = 718 bits (1854), Expect = 0.0
Identities = 362/688 (52%), Positives = 474/688 (68%), Gaps = 12/688 (1%)
Query: 39 FTSPKWLVNKPKFMHLPEEEQRGVSVIPLKFDPKDSKLVENNAYLNDDEFRKNLNNALTL 98
F W+V +PKF++LP+ E + + F+ +S NN YL D F+ NL+ A+
Sbjct: 37 FHDKDWIVKRPKFLNLPKNEHSKLDIFQFNFNKSES----NNVYLQDSSFKDNLDKAMQF 92
Query: 99 VHSNLLTGYTEFDVSNSNATWLRLREFLYQEXXXXXXXXXXXXXXXXXXXXXKPTNPKEL 158
++++ L+ V N WL+LR+++YQ+ P++P L
Sbjct: 93 IYNDKLSSLDAKQVPIKNLAWLKLRDYIYQQLKDPKLQAKTYVPSVSEIIH--PSSPGNL 150
Query: 159 VQHLLSVDQISADTWKSILQ---RQEFSTVDQYYFILKNYFSFIKEQEIIPQMTPSWSLV 215
+ L++ ++IS WKS+L+ +T+D++ +L+ F + EQEI+P MT +
Sbjct: 151 ISLLINCNKISNLVWKSVLKYSLSNNITTLDKFIHVLQQTFDHVYEQEILPMMTNTDDTD 210
Query: 216 D-RGLDISNPSEWFPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLRLLAR 274
+DI+NP+EWFPEARK++R IIMH+GPTNSGKTY ALQKLK+ RGYYAGPLRLLAR
Sbjct: 211 GAHNVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAR 270
Query: 275 EVYDRFQNEGIRCNLLTGEEVIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQMLS 334
EVYDRF E IRCNLLTGEEVI DLD GN AGLTSGTVEM+P+N+ FD+ VLDE+QM+S
Sbjct: 271 EVYDRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMS 330
Query: 335 EKDRGWAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLEVEHQP 394
+ DRGWAWTNA+LGV +KE+HLCGE+SVLPL+ IVK+TGD L +N YERLGKL VE +P
Sbjct: 331 DGDRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKP 390
Query: 395 LANGLKGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKLFNSGE 454
+ +G+KGL+ GDCV+AFSKK ILDLKL+IEK+TNLKVAV+YGSLPPETRV+QA LFN+GE
Sbjct: 391 IKDGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNGE 450
Query: 455 YDILVASDAIGMGLNLSINRVVFTASYKFNGVEVVPLTFSNIKQIXXXXXXXXXXXXXXS 514
YDI+VASDAIGMGLNLSI+RVVFT + K+NG E++ +T S IKQI
Sbjct: 451 YDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGG 510
Query: 515 SKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPTDELVNDLLSYYPPGMKLTVLLN 574
+ G +T+ + +L+ VRK I AP++YL+ AV WPTDE+ L++ +PPG +VLL
Sbjct: 511 VPQ--GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQ 568
Query: 575 KFKTDILKSSTKSFELSYIDDKSKVVSTFEDMRGLTLKDKLRLSNAPVRINPMVMNIFKK 634
++ KSS F LS + K KV+ FE M + DKL+LSNAPV+ PMV F K
Sbjct: 569 TISDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDMPMVTKAFTK 628
Query: 635 FCETIAERRTMSLLNYPLPFLMLHSRHIKDENVSLEFYEEFHQLINLYCWLHIRYPNLFV 694
FCETIA+R T LL+Y LPF +L I +E+ SLE YE + +I LY WL RYPN F+
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRYPNYFI 688
Query: 695 DYESAIDIKNHCEMMIFKKLEFLKKNPY 722
D ESA D+K CEM+IF+KL+ LKKNPY
Sbjct: 689 DMESAKDLKYFCEMIIFEKLDRLKKNPY 716
>SPAC637.11 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 647
Score = 359 bits (921), Expect = 1e-98
Identities = 212/532 (39%), Positives = 306/532 (56%), Gaps = 16/532 (3%)
Query: 191 ILKNYFSFIKEQEIIPQMTPSWSLVDRGLDISNPSEWFPEARKLKRTIIMHVGPTNSGKT 250
+L Y +++ QE I + P L + D+ NP EW+P ARKL+R IIMHVGPTNSGKT
Sbjct: 129 LLSEYRKYVRYQERIEETRPD--LQKQLTDLKNPIEWYPGARKLRRHIIMHVGPTNSGKT 186
Query: 251 YNALQKLKNCPRGYYAGPLRLLAREVYDRFQNEGIRCNLLTGEEVIEDLDAMGNPAGLTS 310
+ AL++LK C +G +AGPLRLLA E+Y+R Q GI CNL TGEE+ D + S
Sbjct: 187 HRALERLKTCKKGIFAGPLRLLAHEIYNRLQANGIACNLYTGEEIRNDYPF----PQVVS 242
Query: 311 GTVEMIPLNRDFDICVLDEVQMLSEKDRGWAWTNAILGVRAKEIHLCGEESVLPLMDKIV 370
TVEM L+ FD+ V+DE+QM+++ RG+AWT +LG++AKEIHLCGEESV+ L+ I
Sbjct: 243 CTVEMCNLSTTFDVAVIDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEESVVKLVRSIA 302
Query: 371 KLTGDTLVVNRYERLGKLEVEHQPLANGLKGLKSGDCVIAFSKKSILDLKLRIEKETNLK 430
K+T D V RYERL L V + L L LK GDCV+AFS+K+I LK +I++ K
Sbjct: 303 KMTQDDFTVYRYERLNPLHVAEKSLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKK 362
Query: 431 VAVVYGSLPPETRVKQAKLFNSGEYD--ILVASDAIGMGLNLSINRVVFTASYKFNGVEV 488
AV+YGSLPPE R +QA LFNS D IL+ASDAIGMGLNL + R+VF+ KF+GV
Sbjct: 363 SAVIYGSLPPEVRNQQASLFNSKSSDENILLASDAIGMGLNLGVKRIVFSDLKKFSGVST 422
Query: 489 VPLTFSNIKQIXXXXXXXXXXXXXXSSKESIGHVTAIDEDILRDVRKGINAPIQYLEKAV 548
+ + IKQI SK+S G VT + + + + +N P + L A
Sbjct: 423 IDIPVPQIKQI----AGRAGRHNPNGSKQSAGIVTTLYQKDFAKLNRAMNLPTKNLFNAC 478
Query: 549 VWPTDELVNDLLSYYPPGMKLTVLLNKFKTDILKSSTKSFELSYIDDKSKVVSTFEDMRG 608
+ D+L LS + + ++ +++ L +T F +S + ++ + ++G
Sbjct: 479 IGAKDDLFFRYLSLFSDDIPQKLIFDRYFK--LAKTTTPFVVSEGALSTFIIEYLDHIKG 536
Query: 609 LTLKDKLRLSNAPVRINPMVMNIF-KKFCETIAERRTMSLLNYPLPFLMLHSRHIKDENV 667
LT+KDK++L PV + +F ++ IA+ + + + + L + R I
Sbjct: 537 LTIKDKIKLLGCPVLKHSKYAPLFIREIGCVIAQGKRLQIYDLKSVPLEILERGIPTTET 596
Query: 668 SLEFYEEFHQLINLYCWLHIRYPNLFVDYESAIDIKNHCEMMIFKKLEFLKK 719
L+ E+ H+LI Y W IRYP + + +A K E + K + L+K
Sbjct: 597 ELQQLEQLHKLIVAYMWASIRYPAI-LQNGAAEKTKAIAEAFLIKGISKLQK 647
>At5g39840 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 776
Score = 324 bits (831), Expect = 3e-88
Identities = 202/530 (38%), Positives = 292/530 (54%), Gaps = 29/530 (5%)
Query: 213 SLVDRGLDISNPSEWFPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLRLL 272
S+VD D++ P+ WFP AR +KR I+ H GPTNSGKTYNALQ+ G Y PLRLL
Sbjct: 252 SIVDTA-DLTKPATWFPFARAMKRKIVYHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLL 310
Query: 273 AREVYDRFQNEGIRCNLLTGEEVIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQM 332
A EV+D+ GI C+LLTG+E A S TVEM+ + +++ VLDE+QM
Sbjct: 311 AMEVFDKVNALGIYCSLLTGQE-----KKYVPFANHVSCTVEMVSTDELYEVAVLDEIQM 365
Query: 333 LSEKDRGWAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLEVEH 392
+++ RG AWT A+LG++A EIHLCG+ SVL ++ K+ TGD LV YER L VE
Sbjct: 366 MADPSRGHAWTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEHYERFKPLVVEA 425
Query: 393 QPLANGLKGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKLFN- 451
+ L LK +KSGDCV+AFS++ I ++K+ IEK TN + V+YG+LPPETR +QAKLFN
Sbjct: 426 KTLLGELKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPETRRQQAKLFND 485
Query: 452 -SGEYDILVASDAIGMGLNLSINRVVFTASYKFNGVEVVPLTFSNIKQIXXXXXXXXXXX 510
EYD+LVASDA+GMGLNL+I RVVF + K+NG ++VP+ S +KQI
Sbjct: 486 QENEYDVLVASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQI-------AGRA 538
Query: 511 XXXSSKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPTDELVNDLLSYYPPGMKLT 570
S+ G T + + L + + + P + K ++P E + +L + P M +
Sbjct: 539 GRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFFEQI-ELFAAQVPDMAFS 597
Query: 571 VLLNKFKTDILKSSTKSFELSYIDDKSKVVSTFEDMRGLTLKDKLRLSNAPVRI-NPMVM 629
LL F S+ L D KV + E + GL+L+D+ APV I NP M
Sbjct: 598 NLLEHFGKHCRLDG--SYFLCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRAM 655
Query: 630 NIFKKFCETIAERRTMSLLNYPLPFLMLHSRHIKDENVSLEFYEEFHQLINLYCWLHIRY 689
+ +F + ++ N P+ M + + L E HQ++++Y WL ++
Sbjct: 656 HNLYRFASSYSQ-------NMPVNVAMGIPKSSAKSDAQLLDLESRHQILSMYLWLSNQF 708
Query: 690 PNLFVDYESAIDIKNHCEMMIFKKLEFLKKNPYKKFNKRSQSKNSSPKNR 739
F E + + ++ E L K +K +K + K ++R
Sbjct: 709 EENFPFVEKVEAMATNIAELLG---ESLSKASWKMESKEEKVKGQMKEDR 755
>Hs4507315 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 786
Score = 258 bits (660), Expect = 2e-68
Identities = 170/501 (33%), Positives = 271/501 (53%), Gaps = 28/501 (5%)
Query: 220 DISNPSEWFPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLRLLAREVYDR 279
D+ P W+P+AR ++R II H GPTNSGKTY+A+QK + G Y GPL LA E++++
Sbjct: 184 DLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLTSLAHEIFEK 243
Query: 280 FQNEGIRCNLLTGEEVIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQMLSEKDRG 339
G+ C+L TGEE + + G A S TVEM + +++ V+DE+QM+ + RG
Sbjct: 244 SNAAGVPCDLETGEERV-TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 302
Query: 340 WAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLEVEHQPLANGL 399
WAWT A+LG+ A+E+HLCGE + + L+ +++ TG+ + V Y+RL + V L L
Sbjct: 303 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHAL-ESL 361
Query: 400 KGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKLFN--SGEYDI 457
L+ GDC++ FSK I + +IE L+ AV+YGSLPP T++ QAK FN + I
Sbjct: 362 DNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI 420
Query: 458 LVASDAIGMGLNLSINRVVFTASYK-----FNGVEVVPLTFSNIKQIXXXXXXXXXXXXX 512
LVA+DAIGMGLNLSI R++F + K E+ P+T S QI
Sbjct: 421 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQI-------AGRAGR 473
Query: 513 XSSKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPTDELVNDLLSYYPPGMKLTVL 572
SS+ G VT ++ + L +++ + P+ + A + PT E + ++ +Y+ P L+ L
Sbjct: 474 FSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQI-EMFAYHLPDATLSNL 532
Query: 573 LNKFKTDILKSSTKSFELSYIDDKSKVVSTFEDMRGLTLKDKLRLSNAPV-RINPMVMNI 631
++ F D + + F + D K + L+L+ + AP+ + P V +
Sbjct: 533 IDIF-VDFSQVDGQYFVCNM--DDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSS 589
Query: 632 FKKFCETIA--ERRTMSLLNYPLPFLMLHSRHIKDENVSLEFYEEFHQLINLYCWLHIRY 689
+F + E T + L + + +L ++IKD L E H +++LY WL R+
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKD----LMDLEAVHDVLDLYLWLSYRF 645
Query: 690 PNLFVDYESAIDIKNHCEMMI 710
++F D D++ + +I
Sbjct: 646 MDMFPDASLIRDLQKELDGII 666
>At4g14790 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 442
Score = 246 bits (628), Expect = 9e-65
Identities = 146/343 (42%), Positives = 209/343 (60%), Gaps = 26/343 (7%)
Query: 220 DISNPSEWFPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLRLLAREVYDR 279
D++ P W+P ARK KR +I+HVGPTNSGKTY+AL+ L+ G Y GPLRLLA EV R
Sbjct: 113 DLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAKR 172
Query: 280 FQNEGIRCNLLTGEEVIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQ------ML 333
+ C+L+TG+E +DL A + TVEM + +D ++DE+Q L
Sbjct: 173 LNKANVPCDLITGQE--KDL---VEGATHKAVTVEMADVTSVYDCAIIDEIQASLARLWL 227
Query: 334 SEKDR----GWAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLE 389
+ R G+A+T A+LG+ A E+HLCG+ +V+PL++ I+K+TGD + V+ YERL L
Sbjct: 228 KKSTRTFCLGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPLV 287
Query: 390 VEHQPLANGLKGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKL 449
P+++ + +K+GDC++ FS+K I K IE+ +VVYGSLPPETR QA
Sbjct: 288 PLKVPVSS-VSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATR 346
Query: 450 FN--SGEYDILVASDAIGMGLNLSINRVVFTASYKFNGVEVVPLTFSNIKQIXXXXXXXX 507
FN + ++D+LVASDAIGMGLNL+I+R++F+ K++G E LT S IKQI
Sbjct: 347 FNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQI-------A 399
Query: 508 XXXXXXSSKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVW 550
SK IG VT + ++ L + + +P LE A +W
Sbjct: 400 GRAGRFQSKFPIGEVTCLHKEDLPLLHSSLKSPSPILE-ANLW 441
>CE19689 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 721
Score = 241 bits (616), Expect = 2e-63
Identities = 165/551 (29%), Positives = 278/551 (49%), Gaps = 51/551 (9%)
Query: 220 DISNPSEWFPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLRLLAREVYDR 279
D++ P W+PEAR + R I H GPTNSGKTY+AL++ + GPL+LLA EV+ R
Sbjct: 173 DLTRPHNWYPEARSVTRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLAAEVFHR 232
Query: 280 FQNEGIRCNLLTGEEVIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQMLSEKDRG 339
GI C+L+TGEE D +P+ S TVEM+ ++ V+DE+QML ++ RG
Sbjct: 233 TNELGIPCDLVTGEERRFAKD-NHHPSQHLSSTVEMLSTQMRVEVAVIDEIQMLRDEQRG 291
Query: 340 WAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLEVEHQPLANGL 399
WAWT A+LG A EIHLCGE + + ++ K+++ G+T+ V YER L + + +
Sbjct: 292 WAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIADKAI-ESY 350
Query: 400 KGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKLFN--SGEYDI 457
++ GDC++ FSK+SI ++E E +K AV+YG LPP T++ QA FN E ++
Sbjct: 351 SNIEPGDCIVCFSKRSIFFNSKKLE-ENGIKPAVIYGDLPPGTKLAQAAKFNDPDDECNV 409
Query: 458 LVASDAIGMGLNLSINRVVFTASYKFNGVEVVPLTFSNIK---QIXXXXXXXXXXXXXXS 514
LVA+DAIGMGLNL+I RV+F + + E++P T++ ++ +
Sbjct: 410 LVATDAIGMGLNLNIRRVIFNSCTR--QTELLP-TYAALQIAGRAGRFGTAYANGVATTM 466
Query: 515 SKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPTDELVNDLLSYYPPGMKLTVLLN 574
KE +G + AI ++ I+ + + PT + + + S++ P LL+
Sbjct: 467 RKEDLGTLKAI-----------LSEKIEPIANVGIAPTYDQI-ETFSFHLPQASFVRLLD 514
Query: 575 KFKTDILKSSTKSFELSYIDDKSKVVSTFEDMRGLTLKDKLRLSNAPV-----RINPMVM 629
F + S F + D + ++ D L LK + +P+ R + + +
Sbjct: 515 LF-VSVCSVSDHFFICTVYD--MRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFV 571
Query: 630 NIFKKFC--ETIAERRTMSLLNY-PLPFLMLHSRHIKDENVSLEFYEEFHQLINLYCWLH 686
+ ++F + + + +L + P P L+ L E+ +++++ Y WL
Sbjct: 572 KMARRFSTGQALTYEWLIDMLEWPPKPATTLN---------ELSLLEQNYEILDQYMWLS 622
Query: 687 IRYPNLFVDYESAIDIKNHCEMMIFKKLEFL--------KKNPYKKFNKRSQSKNSSPKN 738
+R+P++ D + H + MI + +E ++ +K S+ K +P
Sbjct: 623 MRFPDMLPDEPRVREASKHLDSMIQEGVESFMSLLSVGATESKAAGSSKSSEGKRENPSK 682
Query: 739 RYATKKSYRSN 749
K + RS+
Sbjct: 683 SEREKPNKRSS 693
>7296874 [A] KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily
Length = 711
Score = 182 bits (462), Expect = 2e-45
Identities = 135/433 (31%), Positives = 219/433 (50%), Gaps = 56/433 (12%)
Query: 228 FPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLR-----LLAREVYDRFQN 282
FP + +T+ H+ + K + L++ P +Y+ LLA EVY++
Sbjct: 131 FPYFLRHAKTVFPHLDCMDDLKKISDLRQ----PANWYSNARAITRKILLATEVYNKANE 186
Query: 283 EGIRCNLLTGEE----VIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQMLSEKDR 338
G C+L+TGEE + E L PA + TVEM +N +++ V+DE+Q + + R
Sbjct: 187 RGTPCDLVTGEERKFGISESL-----PANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQR 241
Query: 339 GWAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLEVEHQPLANG 398
GWAWT A LG+ A E+H+CGE L L+ KI + TG+T+ V Y+RL +L VE+ L +
Sbjct: 242 GWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTGETVEVRLYDRLTELTVENTALGS- 300
Query: 399 LKGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKLFN--SGEYD 456
L + GDC++ FSK I + IE +VAV+YG LPP T++ QA FN +
Sbjct: 301 LDNIVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPANSCK 359
Query: 457 ILVASDAIGMGLNLSINRVVFTASYK-----FNGVEVVPLTFSNIKQIXXXXXXXXXXXX 511
++VA+DAIGMGLNLSI R++F + K E+ ++ S+ QI
Sbjct: 360 VMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQI-------AGRAG 412
Query: 512 XXSSKESIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPTDELVNDLLSYYPPGMKLTV 571
++ G+VTA + L+ +++ + + +++A + PT + + +L +Y+ P L+
Sbjct: 413 RFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQI-ELYAYHLPSSSLSN 471
Query: 572 LLNKFKTDILKSSTKSFELSYIDDKSKVVSTFEDMR---------GLTLKDKLRLSNAPV 622
L++ F L +DD + ED + L L+ + AP+
Sbjct: 472 LMDIF-----------VNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFCCAPI 520
Query: 623 -RINPMVMNIFKK 634
R P V ++F K
Sbjct: 521 NRKMPFVCSMFLK 533
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,863,408
Number of Sequences: 60738
Number of extensions: 1918563
Number of successful extensions: 5813
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5774
Number of HSP's gapped (non-prelim): 7
length of query: 751
length of database: 30,389,216
effective HSP length: 114
effective length of query: 637
effective length of database: 23,465,084
effective search space: 14947258508
effective search space used: 14947258508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)