ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3050 good U KOG3369 Intracellular trafficking, secretion, and vesicular transport Transport protein particle (TRAPP) complex subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3050 1034610 1034041 -190
(190 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR246w [U] KOG3369 Transport protein particle (TRAPP) complex s... 218 3e-57
SPBC3B9.12 [U] KOG3369 Transport protein particle (TRAPP) comple... 92 4e-19
7297443 [U] KOG3369 Transport protein particle (TRAPP) complex s... 86 4e-17
Hs7706667 [U] KOG3369 Transport protein particle (TRAPP) complex... 84 9e-17
At5g02280 [U] KOG3369 Transport protein particle (TRAPP) complex... 82 6e-16
CE07190 [U] KOG3369 Transport protein particle (TRAPP) complex s... 75 5e-14
>YDR246w [U] KOG3369 Transport protein particle (TRAPP) complex subunit
Length = 219
Score = 218 bits (556), Expect = 3e-57
Identities = 110/220 (50%), Positives = 153/220 (69%), Gaps = 32/220 (14%)
Query: 1 MAIQSVMIINKSGGLVYNHNFIEPKGTMNSNDYLILAGTLHSVFAIASQLTPKAVQISNK 60
MAI+++++INKSGGL+Y NF + +NSN+YLILA TLH VFAIASQLTPKA+Q++ +
Sbjct: 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQ 60
Query: 61 SSQKTETQVPYIPGIGVST-----------ENKMAPLQ-LGSFMGPDYFQEPFTNWNKSG 108
++ E +PYIP +G+S+ NK + LGSF G D+F+EPFTNWNKSG
Sbjct: 61 TN--IENTIPYIPYVGMSSNRSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSG 118
Query: 109 LRHMITDEFSMFLFQSLTGIKFVLISTN------------------NFRNNTSVSIAENI 150
LR + TD+F+MF++Q+LTG+KFV IS++ +N ++ IA+N
Sbjct: 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNF 178
Query: 151 LRKIYCIYSDYVMKDPFYSLDMPIRSELFDSNLKNLIESL 190
LRK+YC+YSDYVMKDP YS++MPIRS LFD +K ++E+L
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218
>SPBC3B9.12 [U] KOG3369 Transport protein particle (TRAPP) complex subunit
Length = 132
Score = 92.0 bits (227), Expect = 4e-19
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 56/187 (29%)
Query: 3 IQSVMIINKSGGLVYNHNFIEPKGTMNSNDYLILAGTLHSVFAIASQLTPKAVQISNKSS 62
+ +++IIN++G L++ F + N+YL+LAGT+H V AI++Q++P
Sbjct: 1 MHALIIINRAGSLIFQREFGSSPTALTPNEYLVLAGTIHGVHAISTQISP---------- 50
Query: 63 QKTETQVPYIPGIGVSTENKMAPLQLGSFMGPDYFQEPFTNWNKSGLRHMITDEFSMFLF 122
+PG SG++ + F+M +
Sbjct: 51 ---------LPG-------------------------------SSGIQLLEAGTFNMHIL 70
Query: 123 QSLTGIKFVLISTNNFRNNTSVSIAENILRKIYCIYSDYVMKDPFYSLDMPIRSELFDSN 182
Q+ TG+KFVL + N A L+K Y +YSDYV+K+PFY+L+MPI+ +LFD
Sbjct: 71 QTHTGMKFVLFTEKKTTN------ARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQ 124
Query: 183 LKNLIES 189
LK I+S
Sbjct: 125 LKRYIDS 131
>7297443 [U] KOG3369 Transport protein particle (TRAPP) complex subunit
Length = 219
Score = 85.5 bits (210), Expect = 4e-17
Identities = 58/170 (34%), Positives = 83/170 (48%), Gaps = 58/170 (34%)
Query: 18 NHNFIEPKGTMNSNDYLILAGTLHSVFAIASQLTPKAVQISNKSSQKTETQVPYIPGIGV 77
N F PK M +N+ + LA + +FAIASQL+P
Sbjct: 95 NLKFSRPK--MTTNEKIFLASMFYPLFAIASQLSP------------------------- 127
Query: 78 STENKMAPLQLGSFMGPDYFQEPFTNWNKSGLRHMITDEFSMFLFQSLTGIKFVLISTNN 137
EP SG+ + D F++ FQ+LTGIKF++IS
Sbjct: 128 ---------------------EP----KSSGIEILEADTFTLHCFQTLTGIKFIIIS--- 159
Query: 138 FRNNTSVSIAENILRKIYCIYSDYVMKDPFYSLDMPIRSELFDSNLKNLI 187
T ++ + +LRK+Y +YSDYV+K+PFYSL+MPIR ELFD+ L+ L+
Sbjct: 160 ---ETGLNGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDNKLQELL 206
>Hs7706667 [U] KOG3369 Transport protein particle (TRAPP) complex subunit
Length = 219
Score = 84.3 bits (207), Expect = 9e-17
Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 47/221 (21%)
Query: 1 MAIQSVMIINKSGGLVYNHNFIEPKGT--------------MNSNDYLILAGTLHSVFAI 46
MAI SV ++NK+GGL+Y + P+ ++ L+ G +
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 47 ASQLTPKAVQISNKSSQKTETQVPYI--------------PGIGVSTENKMAPL-----Q 87
+ L + ++ + + + + Y+ P + + + +A +
Sbjct: 61 HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 88 LGSFMGPDYFQEPFTNWNKSGLRHMITDEFSMFLFQSLTGIKFVLISTNNFRNNTSVSIA 147
+GS + P+ SG+ + TD F + +Q+LTGIKFV+++ + +
Sbjct: 121 IGSQLSPEQ--------GSSGIEMLETDTFKLHCYQTLTGIKFVVLA------DPRQAGI 166
Query: 148 ENILRKIYCIYSDYVMKDPFYSLDMPIRSELFDSNLKNLIE 188
+++LRKIY IYSD+ +K+PFYSL+MPIR ELFD NLK +E
Sbjct: 167 DSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>At5g02280 [U] KOG3369 Transport protein particle (TRAPP) complex subunit
Length = 141
Score = 81.6 bits (200), Expect = 6e-16
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 57/188 (30%)
Query: 2 AIQSVMIINKSGGLVYNHNFIEPKGTMNSNDYLILAGTLHSVFAIASQLTPKAVQISNKS 61
AI S+ IINKSGGL++ + KG M++ND L +A HS+ AI+ Q
Sbjct: 3 AIYSLYIINKSGGLIF-YKDCGTKGRMDTNDSLRVASLWHSMHAISQQ------------ 49
Query: 62 SQKTETQVPYIPGIGVSTENKMAPLQLGSFMGPDYFQEPFTNWNKSGLRHMITDEFSMFL 121
++P+ SG+ + D F +
Sbjct: 50 ---------------------LSPVN-----------------GCSGIELLEADTFDLHC 71
Query: 122 FQSLTGIKFVLISTNNFRNNTSVSIAENILRKIYCIYSDYVMKDPFYSLDMPIRSELFDS 181
FQSL G KF ++ E++LR IY +Y+DYV+K+PFY ++MPIR ELFD
Sbjct: 72 FQSLPGTKFFVVC------EPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRCELFDI 125
Query: 182 NLKNLIES 189
NL ++S
Sbjct: 126 NLTQAVQS 133
>CE07190 [U] KOG3369 Transport protein particle (TRAPP) complex subunit
Length = 224
Score = 75.1 bits (183), Expect = 5e-14
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 55/162 (33%)
Query: 27 TMNSNDYLILAGTLHSVFAIASQLTPKAVQISNKSSQKTETQVPYIPGIGVSTENKMAPL 86
T+++N+ +IL+ HS+F IA QL+P QK+
Sbjct: 107 TVSTNEKIILSSMFHSLFTIAVQLSP---------CQKS--------------------- 136
Query: 87 QLGSFMGPDYFQEPFTNWNKSGLRHMITDEFSMFLFQSLTGIKFVLISTNNFRNNTSVSI 146
SG+ + T +F +F QS TG+KFV+I++ S
Sbjct: 137 --------------------SGVEVLETTQFKLFCLQSRTGVKFVVITSA-----ASNIA 171
Query: 147 AENILRKIYCIYSDYVMKDPFYSLDMPIRSELFDSNLKNLIE 188
A+++L K+Y +Y+D+ +K+PFYS+DMPIR++ FD +K L+E
Sbjct: 172 ADSLLSKMYELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLE 213
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,685,551
Number of Sequences: 60738
Number of extensions: 411574
Number of successful extensions: 994
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 14
length of query: 190
length of database: 30,389,216
effective HSP length: 100
effective length of query: 90
effective length of database: 24,315,416
effective search space: 2188387440
effective search space used: 2188387440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)