ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3111 suspect: LH R KOG4198 General function prediction only RNA-binding Ran Zn-finger protein and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3111 1053660 1051768 -631
(631 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL167c [R] KOG4198 RNA-binding Ran Zn-finger protein and relate... 403 e-112
SPAC17H9.04c [R] KOG4198 RNA-binding Ran Zn-finger protein and r... 215 2e-55
>YDL167c [R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins
Length = 719
Score = 403 bits (1036), Expect = e-112
Identities = 212/416 (50%), Positives = 268/416 (63%), Gaps = 25/416 (6%)
Query: 1 MFYVLFECETVYSEEAPKDHTMISSIAYQIISVETLKPIWEEARRHSIDA---THSLKNT 57
M YV+ E + + + PKD I++IA+QI++ ETL + SI+ T SL++
Sbjct: 1 MHYVVLELQVAHLPDTPKDQCRIANIAFQIVNAETLVCHYGTNSLPSIEVNGTTKSLESA 60
Query: 58 IQSMENAVMENVAGEEFVLCSLNSTWDLRVTLSRQARDESWLLPSFLQHPKVFDLWREVD 117
+ ++ + + + ++FVL SL STW +RVTL RQARD+ ++L S+LQHPKVFDLW+E D
Sbjct: 61 MVQLDKDIHDVIGNDDFVLVSLYSTWHIRVTLPRQARDDGFILTSYLQHPKVFDLWKEFD 120
Query: 118 RWYRNHPEQYEKGTDRXXXXXXXXXXXXQRNKHKLVKSIDALLVFLNIDLDNKSTTDQRM 177
RW NHPE G + N K K +D ++ R+
Sbjct: 121 RWCVNHPEIL--GQKKAISNNNCNTKSISINAAKNTKDLDEIV---------------RI 163
Query: 178 EQVNIDKNSFETLPSIQQCEK----VLFKLHRNCTSDNDQTLVLTHPFDSYLDIKNFLLE 233
+V+I ++P I K +L +LH+ CTS D VLT P+DS+ DI+ FL E
Sbjct: 164 LEVSIPTEEAGSVPEIYSLLKRTTDILIQLHKKCTSPEDMESVLTKPYDSHTDIRAFLQE 223
Query: 234 KSTVLYMNNLPPDTTQSELESWFAQFGSRPVGFWTVKNVVEDXXXXXXXXXXXXXLYVDE 293
KS +LYMNNLPPDTTQSELESWF Q+G RPVGFWTVKN+VED YV++
Sbjct: 224 KSKILYMNNLPPDTTQSELESWFTQYGVRPVGFWTVKNIVEDTSNVNNNWSLNNSPYVED 283
Query: 294 QDSISGFVVYQAHEEALDSLTLNGRSILSNMSNTKQPRVVEHVVEIQPSSNSVLDRAQEI 353
QDSISGFVV+Q HEEA + L LNGRSILSN++NTKQPRVVEHV+E+QPSS VLD+AQEI
Sbjct: 284 QDSISGFVVFQTHEEATEVLALNGRSILSNLANTKQPRVVEHVLELQPSSTGVLDKAQEI 343
Query: 354 LTAFPQSKNKPRPGDWTCPSCSFSNFQRRTACFRCSFPMSSALQMSNGN-NYNKNS 408
L+ FPQSKNKPRPGDW CPSC FSNFQRRTACFRCSFP S Q+ N N N NS
Sbjct: 344 LSPFPQSKNKPRPGDWNCPSCGFSNFQRRTACFRCSFPAPSNSQIHTANSNNNVNS 399
Score = 78.6 bits (192), Expect = 3e-14
Identities = 31/34 (91%), Positives = 33/34 (96%)
Query: 502 GSNVPFRAGDWKCANCTYHNFAKNVVCLRCGGPK 535
GSN+PFRAGDWKC+ CTYHNFAKNVVCLRCGGPK
Sbjct: 575 GSNMPFRAGDWKCSTCTYHNFAKNVVCLRCGGPK 608
Score = 50.8 bits (120), Expect = 6e-06
Identities = 22/63 (34%), Positives = 31/63 (48%)
Query: 365 RPGDWTCPSCSFSNFQRRTACFRCSFPMSSALQMSNGNNYNKNSVHGYKARTSTPQTADY 424
R GDW C +C++ NF + C RC P S + S N+Y +S G +RT +
Sbjct: 581 RAGDWKCSTCTYHNFAKNVVCLRCGGPKSISGDASETNHYIDSSTFGPASRTPSNNNISV 640
Query: 425 NDN 427
N N
Sbjct: 641 NTN 643
>SPAC17H9.04c [R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins
Length = 604
Score = 215 bits (547), Expect = 2e-55
Identities = 158/533 (29%), Positives = 241/533 (44%), Gaps = 119/533 (22%)
Query: 23 ISSIAYQIISVETLKP-------IWEEARRHSI-DATHSLKNTIQSMENAVME--NVAGE 72
I I + I+ +TL+ I E++ RH I + SL I +++N++ E N G+
Sbjct: 41 IHEICWVILDGKTLEKQHCESCSIREDSSRHGICGSASSLTEAIFTLDNSIQERLNFQGK 100
Query: 73 EFVLCSLNSTWDLRVTLSRQARDESWLLPSFLQHPKVFDLWREVDRWYRNHPEQYEKGTD 132
F +N +LRV L ++ARD+ LPS+++HP++FDL E +W Q G
Sbjct: 101 PFTFVVMNGR-ELRVLLPKEARDQGITLPSYMRHPRLFDLSSEYAKW------QIRMGAV 153
Query: 133 RXXXXXXXXXXXXQRNKHKLVKSIDALLVFLNIDLDN-KSTTDQRMEQVNIDKNSFETLP 191
+I +F +D+D+ T+ + +++ + T
Sbjct: 154 PPY-------------------TITLSHIFGKLDVDSLPPITESKAIELSPSDAPYIT-K 193
Query: 192 SIQQCEKV------LFKLHRNCTSDNDQTLVLTHPFDSYLDIKNFLLEKSTVLYMNNLPP 245
+ QC ++ L + + + VLT P + D ++F E+S ++++ L
Sbjct: 194 GLTQCWRLANATTLLLRKAEKDSRGHSLPSVLTQPINCQADARSFYAERSKIVHVAGLTN 253
Query: 246 DTTQSELESWFAQFGSRPVGFWTVKNVVEDXXXXXXXXXXXXXLYVDEQDSISGFVVYQA 305
D TQ ELESWF G PV WT+K + + +GFV++ +
Sbjct: 254 DVTQLELESWFTNHGVHPVALWTLKTPEP------------------YKSTGTGFVLFAS 295
Query: 306 HEEALDSLTLNGRSILSNMSNTKQPRVVEHVVEIQPSSNSVLDRAQEILTAFPQSKNKPR 365
HE+A D+L NG + M +EI PSS VLD+A +IL FP SKN+PR
Sbjct: 296 HEDAADALAFNGYCLGDRM------------LEIIPSSTKVLDKASDILIPFPSSKNRPR 343
Query: 366 PGDWTCPSCSFSNFQRRTACFRCSFPMSSALQMSNGNN-YNKNSVHGYKARTSTPQTADY 424
PGDW CP C FSNFQRRT+CFRCSFP + + + G+N ++ + +G
Sbjct: 344 PGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYG------------- 390
Query: 425 NDNIXXXXXXXFVLNSLSGQLTSASAQDLTQKMKLQMSDTANRRFNYPNRGPXXXXXXXX 484
N F+ N G + ++ + ++ Q + A +
Sbjct: 391 --NSYGNGSSHFIAN-YGGSVHHSNENTMQSDLQHQNGNNAVNHHH-------------- 433
Query: 485 XXXXXXXXXXXXGPMSNGSNVPFRAGDWKCAN--CTYHNFAKNVVCLRCGGPK 535
S G NVPFRAGDWKC + C YHNFAKNV CLRCG +
Sbjct: 434 ------------SSRSFGGNVPFRAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,466,802
Number of Sequences: 60738
Number of extensions: 1312054
Number of successful extensions: 3969
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3953
Number of HSP's gapped (non-prelim): 11
length of query: 631
length of database: 30,389,216
effective HSP length: 113
effective length of query: 518
effective length of database: 23,525,822
effective search space: 12186375796
effective search space used: 12186375796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)