ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3145 good L KOG0967 Replication, recombination and repair ATP-dependent DNA ligase I
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3145 1061786 1059687 -700
(700 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL164c [L] KOG0967 ATP-dependent DNA ligase I 811 0.0
Hs4557719 [L] KOG0967 ATP-dependent DNA ligase I 504 e-142
7291668 [L] KOG0967 ATP-dependent DNA ligase I 502 e-142
CE05328 [L] KOG0967 ATP-dependent DNA ligase I 461 e-129
At1g49250 [L] KOG0967 ATP-dependent DNA ligase I 452 e-126
ECU02g1220 [L] KOG0967 ATP-dependent DNA ligase I 413 e-115
At1g08130 [L] KOG0967 ATP-dependent DNA ligase I 413 e-115
SPBC713.06 [L] KOG0967 ATP-dependent DNA ligase I 370 e-102
At1g66730_2 [L] KOG0967 ATP-dependent DNA ligase I 340 3e-93
SPAC20G8.01 [L] KOG0967 ATP-dependent DNA ligase I 278 3e-74
Hs7710126 [L] KOG4437 ATP-dependent DNA ligase III 159 1e-38
Hs4504995 [L] KOG4437 ATP-dependent DNA ligase III 159 1e-38
7299616 [L] KOG4437 ATP-dependent DNA ligase III 142 2e-33
Hs4504997 [L] KOG0966 ATP-dependent DNA ligase IV 131 4e-30
YOR005c [L] KOG0966 ATP-dependent DNA ligase IV 112 1e-24
SPCC1183.05c [L] KOG0966 ATP-dependent DNA ligase IV 101 3e-21
At5g57160 [L] KOG0966 ATP-dependent DNA ligase IV 95 4e-19
7292907 [L] KOG0966 ATP-dependent DNA ligase IV 84 7e-16
CE00757 [L] KOG0966 ATP-dependent DNA ligase IV 56 2e-07
>YDL164c [L] KOG0967 ATP-dependent DNA ligase I
Length = 755
Score = 811 bits (2095), Expect = 0.0
Identities = 419/741 (56%), Positives = 516/741 (69%), Gaps = 54/741 (7%)
Query: 14 RPVTFKVPSQQMST------KRSKQLTLDGFL--------------RPNKKQKVDEEGDS 53
RP+ ++P S+ K+ KQ TL F + + K +++ D+
Sbjct: 14 RPLKSRLPLLMSSSLPSSAGKKPKQATLARFFTSMKNKPTEGTPSPKKSSKHMLEDRMDN 73
Query: 54 AMPDETAAAPPVKSESSLSNITPPKSRGETLTPVPSKLK--------------------- 92
+E A +K + + P S G + +PS
Sbjct: 74 VSGEEEYATKKLKQTAVTHTVAAPSSMGSNFSSIPSSAPSSGVADSPQQSQRLVGEVEDA 133
Query: 93 --------FHSNIPFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLVPITYLF 144
+ SNIP++E+C+ F IE SSRL I ICS F ++++ ++L+P TYLF
Sbjct: 134 LSSNNNDHYSSNIPYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMKQSSKNLIPTTYLF 193
Query: 145 IHKXXXXXXXXXXXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTM 204
I++ +KTISE CGKS+ QI+ KY++IGDLGEIAM ARNVQPTM
Sbjct: 194 INRLGPDYEAGLELGLGENLLMKTISETCGKSMSQIKLKYKDIGDLGEIAMGARNVQPTM 253
Query: 205 FKPKPLTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIG 264
FKPKPLTVGEVF NL +IAK+ GKDSQ +K LIK+MLTACKG EAKFLIRSLESKLRIG
Sbjct: 254 FKPKPLTVGEVFKNLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAKFLIRSLESKLRIG 313
Query: 265 LAEKTVLISVSKAILTHEHNGQEPST-----EMVEQAESLIRDAFCQVPNYEMIINVALQ 319
LAEKTVLIS+SKA+L H+ N ++ +++E A+ IRDAFCQVPNYE++IN L+
Sbjct: 314 LAEKTVLISLSKALLLHDENREDSPDKDVPMDVLESAQQKIRDAFCQVPNYEIVINSCLE 373
Query: 320 YGIMNLNQHIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDG 379
+GIMNL+++ LRPGIPL+PMLAKPTK+I+EVLDRFQG FT EYKYDGERAQVHL DG
Sbjct: 374 HGIMNLDKYCTLRPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKYDGERAQVHLLNDG 433
Query: 380 SMKIYSRNGEDMTERYPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQVLSTRK 439
+M+IYSRNGE+MTERYPEI++ +++DL TK+ I+D EAVAWD++QGKILPFQVLSTRK
Sbjct: 434 TMRIYSRNGENMTERYPEINITDFIQDLDTTKNLILDCEAVAWDKDQGKILPFQVLSTRK 493
Query: 440 RKGVELKDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTT 499
RK VEL DVKV+VCL+AFDILC NDE LINKS ERR+ L G+F +A ++TT
Sbjct: 494 RKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVVPGEFQYATQITTN 553
Query: 500 NFDELQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVV 559
N DELQK+LD+SV SCEGLMVKMLEG ESHYEPSKRSRNWLKLKKDYLEGVGDSLDL V
Sbjct: 554 NLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSLDLCV 613
Query: 560 LXXXXXXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTVEHPS 619
L FLLGCYN D+ EFETCCKIGTGFSDEMLQ L+ +L T ++ P
Sbjct: 614 LGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLLHDRLTPTIIDGPK 673
Query: 620 TNVIYDSSAPADVWFEPSMLFEVLTADLSLSPVYKAGFEAFGKGISLRFPRFVRIRDDKN 679
++DSSA DVWFEP+ LFEVLTADLSLSP+YKAG F KG+SLRFPRF+RIR+DK
Sbjct: 674 ATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKAGSATFDKGVSLRFPRFLRIREDKG 733
Query: 680 VTDATSSDQVIEFYESQAHMK 700
V DATSSDQ++E YE+Q+HM+
Sbjct: 734 VEDATSSDQIVELYENQSHMQ 754
>Hs4557719 [L] KOG0967 ATP-dependent DNA ligase I
Length = 919
Score = 504 bits (1299), Expect = e-142
Identities = 291/699 (41%), Positives = 412/699 (58%), Gaps = 31/699 (4%)
Query: 23 QQMSTKRSKQLTLDGFLRPNK---KQKVDEEGDSAMPDETAAAPPVKSESSLSNITPPKS 79
+Q R TL F P K K++V EE A E AA P+ S P K+
Sbjct: 216 EQTKPPRRAPKTLSSFFTPRKPAVKKEVKEEEPGAPGKEGAAEGPLDP----SGYNPAKN 271
Query: 80 RGETLTPVPSKL-KFHSNIPFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLV 138
PV K +P+ + TF+ IE S+RL + S L SV+ P L+
Sbjct: 272 NYH---PVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLL 328
Query: 139 PITYLFIHKXXXXXXXXXXXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQAR 198
P+ YL ++ +K +++A G+ ++ +R + E GD+G +A +R
Sbjct: 329 PVLYLSLNHLGPPQQGLELGVGDGVL-LKAVAQATGRQLESVRAEAAEKGDVGLVAENSR 387
Query: 199 NVQPTMFKPKPLTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLE 258
+ Q M P PLT VF+ IA+ G S ++K +IK + AC+ EA+F+ RSL
Sbjct: 388 STQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLS 447
Query: 259 SKLRIGLAEKTVLISVSKAILTHEHNGQEPSTEMV---------------EQAESLIRDA 303
+LR+GLAE++VL ++S+A+ + GQE MV E+ +++
Sbjct: 448 GRLRLGLAEQSVLAALSQAV-SLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQT 506
Query: 304 FCQVPNYEMIINVALQYGIMNLNQHIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCE 363
FC+VP+ + II V L++G+ L +H KL PGIPL+PMLA PT+ ISEVL RF+ FTCE
Sbjct: 507 FCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCE 566
Query: 364 YKYDGERAQVHLCRDGSMKIYSRNGEDMTERYPEIDVKHYVKDLGATKSFIVDSEAVAWD 423
YKYDG+RAQ+H G +KI+SRN ED T +YP+I + L + SFI+D+EAVAWD
Sbjct: 567 YKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWD 626
Query: 424 QEQGKILPFQVLSTRKRKGVELKDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTF 483
+E+ +I PFQVL+TRKRK V+ +++V+VCLYAFD++ LN E L+ + RRQ+L + F
Sbjct: 627 REKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENF 686
Query: 484 NGTQGQFDFANELTTTNFDELQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKL 543
T+G+F FA L T + +++ ++L+QSVKDSCEGLMVK L+ ++ YE +KRS NWLKL
Sbjct: 687 VETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLD-VDATYEIAKRSHNWLKL 745
Query: 544 KKDYLEGVGDSLDLVVLXXXXXXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEML 603
KKDYL+GVGD+LDLVV+ FLL Y+ DSEE + CK+GTGFSDE L
Sbjct: 746 KKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEEL 805
Query: 604 QDLYTKLKDTTVEHPSTNVIYDSSAPADVWFEPSMLFEVLTADLSLSPVYKA--GFEAFG 661
++ + LK + P V D + D W +PS ++EV ADLSLSP+Y A G
Sbjct: 806 EEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSD 865
Query: 662 KGISLRFPRFVRIRDDKNVTDATSSDQVIEFYESQAHMK 700
KGISLRFPRF+R+R+DK AT+S QV Y Q+ ++
Sbjct: 866 KGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQ 904
>7291668 [L] KOG0967 ATP-dependent DNA ligase I
Length = 692
Score = 502 bits (1293), Expect = e-142
Identities = 270/612 (44%), Positives = 383/612 (62%), Gaps = 15/612 (2%)
Query: 98 PFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXXXXX 157
P+ L TFQ IE T RL + S F SV+ PE LVP YL I++
Sbjct: 71 PYLALARTFQVIEETKGRLKMIDTLSNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLEL 130
Query: 158 XXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEVFN 217
+K I +A G+++ I+++ + GDLG +A Q+R Q MF+P PL V +VF
Sbjct: 131 GVAETTL-MKAICKATGRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFR 189
Query: 218 NLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISVSKA 277
L IAK +G+ K L+ M AC+ EA+F IRSL KLRIG+AE+++L +++
Sbjct: 190 KLREIAKLSGQS----KMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG 245
Query: 278 ILTHEHNGQEPSTEM-------VEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHIK 330
++ H ++++ + L++ A+CQ PNY++II L+Y I L +
Sbjct: 246 LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKYDIKELQERCP 305
Query: 331 LRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGED 390
+ PG+PL+PMLA+PTK + EV +RF G + TCE+KYDGERAQ+H G + I+SRN E+
Sbjct: 306 MHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIHRNEKGEISIFSRNSEN 365
Query: 391 MTERYPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELKDVKV 450
T +YP++ + G KS+I+DSE VAWD E+ +ILPFQVLSTRKRK V+++++KV
Sbjct: 366 NTAKYPDLIARSTALLKGDVKSYIIDSEIVAWDVERKQILPFQVLSTRKRKNVDIEEIKV 425
Query: 451 RVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQKYLDQ 510
+VC+Y FD+L +N L+ K+ ERR++LL+ F +G++ FA L T + DE+Q++L++
Sbjct: 426 QVCVYIFDLLYINGTALVTKNLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEE 485
Query: 511 SVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXXXX 570
S+K +CEGLMVK L+ EE+ YE +KRSRNWLKLKKDYL VGDSLDLVV+
Sbjct: 486 SIKGNCEGLMVKTLD-EEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRT 544
Query: 571 XXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTVEHPSTNVIYDSSAPA 630
FLL CY+ ++EE+++ CKIGTGF+DE LQ L + YD S
Sbjct: 545 GTYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSYYRYDPSLEP 604
Query: 631 DVWFEPSMLFEVLTADLSLSPVYKA--GFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQ 688
D WFEP ++EV ADLSLSP+++A G +GISLRFPRF+RIRDDKN +AT ++Q
Sbjct: 605 DHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKNSENATDANQ 664
Query: 689 VIEFYESQAHMK 700
V Y+SQ +K
Sbjct: 665 VAHMYQSQDQVK 676
>CE05328 [L] KOG0967 ATP-dependent DNA ligase I
Length = 847
Score = 461 bits (1187), Expect = e-129
Identities = 256/608 (42%), Positives = 367/608 (60%), Gaps = 11/608 (1%)
Query: 95 SNIPFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXX 154
S +P+ E T + IE S + + + ++F VL+ P+ L Y+ +++
Sbjct: 91 SKVPYKEFALTLEKIEELSGKKKVDEL-AQFFTKVLDFSPDDLTACVYMSVNQLGPSYEG 149
Query: 155 XXXXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGE 214
IK +++A G++ +I+ R GDLG +A Q+R+ Q + PK LTV
Sbjct: 150 LELGVAENSL-IKAVAKATGRTEGKIKEDLRAKGDLGTVAQQSRSNQKMLAVPKALTVPT 208
Query: 215 VFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISV 274
VFN L IAK +G + ++K I +L AC+G EA+FL+R L K+RIGL E++VL ++
Sbjct: 209 VFNKLTEIAKLSGTSAMNKKVDAISALLIACQGIEARFLVRMLAGKMRIGLGEQSVLSAL 268
Query: 275 SKAILTHEHNGQEPSTEMVEQAESL----IRDAFCQVPNYEMIINVALQYGIMNLNQHIK 330
A + Q+ + ++ + ++ A+C+ PNY +I VAL G+ L + K
Sbjct: 269 GHAFTLSKITDQKVRGDKLDSLKDANVKRVKTAYCECPNYNRLIEVALTEGVEALVEKCK 328
Query: 331 LRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGED 390
L PGIPL+PMLA PTK I E++ RF+ TCE+KYDGER Q+H DG + IYSRN E+
Sbjct: 329 LSPGIPLKPMLAHPTKGIDEIMRRFRNQTMTCEWKYDGERGQIHKREDGQIFIYSRNQEN 388
Query: 391 MTERYPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELKDVKV 450
T +YP+I K SFIVD+E VA D E G ILPFQVLSTRKRK D V
Sbjct: 389 NTTKYPDIIEKISSCIGDGVTSFIVDAEVVAID-EAGLILPFQVLSTRKRKNAT-DDNGV 446
Query: 451 RVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQKYLDQ 510
+V ++ FD+L N EPL+ K +RR++L F G F FA + T + DE+ + D+
Sbjct: 447 KVVVFLFDLLYFNGEPLVRKPLRKRRELLRTNFKKIDGSFYFATSVDTNDTDEINSFFDE 506
Query: 511 SVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXXXX 570
+V++ CEGLM+K L+ E + YE S+RS +WLK+KKDY++GVGD+LDLVV+
Sbjct: 507 AVQNKCEGLMIKTLDTEAT-YEISRRSHSWLKMKKDYVDGVGDTLDLVVMGAYSGVGKRT 565
Query: 571 XXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTVEHPSTNVIYDSSAPA 630
+LLGCYN +EE+E+ CKIGTGF+DE L + Y L+D ++ + +D +
Sbjct: 566 GVYGGYLLGCYNPTTEEYESVCKIGTGFTDEDLAEQYKILQDKKIDKSPSYYQFDHTLKP 625
Query: 631 DVWFEPSMLFEVLTADLSLSPVYKA--GFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQ 688
D F P ++FEV AD+++SP +KA G GKGISLRFPRF+RIRDDKN DATSS+Q
Sbjct: 626 DDTFSPYLVFEVKCADITISPRHKAASGLTDDGKGISLRFPRFLRIRDDKNSDDATSSEQ 685
Query: 689 VIEFYESQ 696
V+E Y++Q
Sbjct: 686 VLEMYKNQ 693
>At1g49250 [L] KOG0967 ATP-dependent DNA ligase I
Length = 657
Score = 452 bits (1162), Expect = e-126
Identities = 255/653 (39%), Positives = 381/653 (58%), Gaps = 31/653 (4%)
Query: 57 DETAAAPPVKSESS----LSNITPPKSRGETLTPVPSKLKFHSNIPFAELCDTFQAIEVT 112
+ET PP + + +S+ PKS + +T + SK+ P
Sbjct: 13 EETVDTPPTRVDDKTLVLISDSKKPKS--DRVTKLKSKIGLLKKKP------------TE 58
Query: 113 SSRLAITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXXXXXXXXXXXXXIKTISEA 172
S R+ IT I L +V+ P+ L+P YL ++ IK ISEA
Sbjct: 59 SGRIVITHILCNMLRTVIATTPDDLLPTVYLAANEIAPAHEGIKLGMGKGSYIIKAISEA 118
Query: 173 CGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEVFNNLVSIAKSNGKDSQS 232
G++ + +Y ++GDLG +A +R+ Q +F PKPLTV +V + L IAK +GK S+
Sbjct: 119 FGRTESHVEQQYTQLGDLGLVANGSRSSQTMIFMPKPLTVVKVADTLRLIAKESGKGSKD 178
Query: 233 RKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISVSKAILTHEHNGQEPST-- 290
+K L+K +L A E +L R L+ LR+G + +TVL ++ +A + +E + + P
Sbjct: 179 KKKDLMKALLVATTDCEPLYLTRLLQDNLRLGFSRQTVLAALGQAAVYNEEHSKPPPNIK 238
Query: 291 EMVEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHIKLRPGIPLQPMLAKPTKSISE 350
+++A +++++ F +P Y++I+ L G+ NL + L G+P++PMLAK T +
Sbjct: 239 NPLDEAATIVKEVFSMLPVYDIIVGALLTSGVWNLPKTCNLTLGVPVRPMLAKATTRVDL 298
Query: 351 VLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGEDMTERYPEIDVKHYVKDLGAT 410
+L++F+ T FT EYKYDGERAQ++ DG+++I+SR+ E T +YP++ +
Sbjct: 299 ILEKFKDTVFTAEYKYDGERAQIYYMEDGTVEIFSRHAERNTGKYPDVALVLSRLKKPTV 358
Query: 411 KSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELKDVKVRVCLYAFDILCLNDEPLINK 470
KSFI+D E V +++E+ KILP Q STR K V + D+KV VC++AFDIL LN + LI++
Sbjct: 359 KSFILDCEVVTFNREKEKILPLQ--STRAHKNVNVSDIKVGVCVFAFDILYLNGQLLIHE 416
Query: 471 SFHERRQILLDTFNGTQGQFDFANELTTTNFDELQKYLDQSVKDSCEGLMVKMLEGEESH 530
+ + RR+ L D+F G F FA LT+ + ELQ++L S+ CEGLM+K L +
Sbjct: 417 NLNIRREKLHDSFEEDLGYFQFATALTSNDIGELQEFLKASIDIGCEGLMIKSLYSNAT- 475
Query: 531 YEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXXXXXXXXXFLLGCYNLDSEEFET 590
YEP+KRS NWLKLKKDY++ +GDS+DLV + +LL CY++D EEF++
Sbjct: 476 YEPAKRSNNWLKLKKDYMDNIGDSVDLVPIATFHGRGKRTGFFGAYLLACYDVDKEEFQS 535
Query: 591 CCKIGTGFSDEMLQDLYTKLKDTTVEHPSTNVIYDSSAPADVWFEPSMLFEVLTADLSLS 650
CKIGT FSD LQDL + L + P D+ DVW EP+ ++EV ADL++S
Sbjct: 536 ICKIGTEFSDVELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEPTEVWEVKAADLTVS 595
Query: 651 PVYKAGFEAFG-----KGISLRFPRFVRIRDDKNVTDATSSDQVIEFYESQAH 698
PVY+ EA G KGISLRFPR VRIR DKN +AT+SDQ+ E Y++Q H
Sbjct: 596 PVYR---EAIGIVDPDKGISLRFPRLVRIRKDKNPEEATTSDQIAEMYQAQKH 645
>ECU02g1220 [L] KOG0967 ATP-dependent DNA ligase I
Length = 589
Score = 413 bits (1061), Expect = e-115
Identities = 233/599 (38%), Positives = 345/599 (56%), Gaps = 23/599 (3%)
Query: 95 SNIPFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXX 154
S I FA+ C + I +TS RL I +I + +L ++ E P S+ P YL I
Sbjct: 2 SKILFADFCTVLEKISMTSKRLEIQSIFTDYLRNIRETHPPSMAPALYLSI-ATVYPEYF 60
Query: 155 XXXXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGE 214
+ ++E GKS + +RN+Y + GDLG IAM+ R V + L V +
Sbjct: 61 NKELGVGENALVGIVAEVTGKSSKGVRNEYSKEGDLGTIAMRCR-VSQLLIPKTQLEVMD 119
Query: 215 VFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISV 274
VF + +A G S S K +I M+ C E+K+LIR +E +L+IGLA KTVLIS+
Sbjct: 120 VFLGMRRVANEEGPRSSSSKKRIILGMMVKCSPLESKYLIRLIEGRLKIGLALKTVLISL 179
Query: 275 SKAILTHEHNGQEPSTEMVEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHIKLRPG 334
+ S + +++ I+ AF + P+ + + L++G+ L+ ++ PG
Sbjct: 180 ANVF----------SDDKIDE----IKAAFNRQPDIGRLADCLLEHGVEGLSTKFQVTPG 225
Query: 335 IPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGEDMTER 394
IPL+PML+ P+K ++ R + FTCEYKYDGER Q+H D S++ +SRN E TE+
Sbjct: 226 IPLKPMLSNPSKDLTSAFKRVENKSFTCEYKYDGERVQIHRF-DSSVETFSRNSEKTTEK 284
Query: 395 YPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELKDVKVRVCL 454
YP++ + V D + FIVD E VA++Q++ +ILPFQVL+TRKRK VE ++V VC+
Sbjct: 285 YPDLMGLYDVSD----RDFIVDGEIVAYNQKERRILPFQVLTTRKRKRVESNKIEVHVCV 340
Query: 455 YAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQKYLDQSVKD 514
+ FD++ + I++ ERR++L +F G+F FA +E + + ++SV++
Sbjct: 341 FVFDLIYFDGRSWIDEPLEERRRVLHSSFKEIDGKFHFAEFKDCETPEEAETFFNKSVEN 400
Query: 515 SCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXXXXXXXX 574
+ EG+M+K L G ++ Y PS+RS W+K+KKDYLE + DSLDLVV+
Sbjct: 401 NFEGMMIKTL-GSDATYLPSQRSNKWIKIKKDYLESMSDSLDLVVMGAYYGKGRRAGFYG 459
Query: 575 XFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTVEHPSTNVIYDSSAPADVWF 634
FLLG YN + E+FE CKIGTGF D +L L+ +L + P N Y S DVW
Sbjct: 460 GFLLGVYNDEEEKFEALCKIGTGFDDSILSKLHEQLSSSLCSAPK-NYSYKESVKPDVWV 518
Query: 635 EPSMLFEVLTADLSLSPVYKAGFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQVIEFY 693
E ++EV A +SLSP+Y A + KGISLRFPRF+R RDDK+V +AT+S Q + Y
Sbjct: 519 EAKYVWEVRAAGISLSPIYSAAWSKGEKGISLRFPRFIRERDDKDVREATTSSQAYQMY 577
>At1g08130 [L] KOG0967 ATP-dependent DNA ligase I
Length = 794
Score = 413 bits (1061), Expect = e-115
Identities = 255/724 (35%), Positives = 380/724 (52%), Gaps = 93/724 (12%)
Query: 31 KQLTLDGFLRPNKKQKVDEEGDSAMP--DETAAAPP----VKSESSLSNITPPKSRGETL 84
K + +G L P + ++ DSA P D ++ A K +LS KS+ L
Sbjct: 96 KTIVSEGTL-PKTEDLLEPVSDSANPRSDTSSIAEDSKTGAKKAKTLSKTDEMKSKIGLL 154
Query: 85 TPVPSKL--------KFHSNIPFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPES 136
P+ + +PF + F I S R+ IT I L +V+ PE
Sbjct: 155 KKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTPED 214
Query: 137 LVPITYLFIHKXXXXXXXXXXXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQ 196
LV YL ++ IK ISEA G++ ++ + E+GDLG +A
Sbjct: 215 LVATVYLSANEIAPAHEGVELGIGESTI-IKAISEAFGRTEDHVKKQNTELGDLGLVAKG 273
Query: 197 ARNVQPTMFKPKPLTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRS 256
+R+ Q MFKP+PLTV +VF+ IAK +GKDS +K + +K +L A E +L R
Sbjct: 274 SRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRL 333
Query: 257 LESKLRIGLAEKTVLISVSKA-ILTHEHNGQEPSTEM-VEQAESLIRDAFCQVPNYEMII 314
L++KLR+G + +TVL ++ +A + EH+ P+T+ +E+A +++ F +P Y++I+
Sbjct: 334 LQAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIV 393
Query: 315 NVALQYGIMNLNQHIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVH 374
L G+ NL + G+P+ PMLAKPTK ++E+L++FQ FTCEYKYDGERAQ+H
Sbjct: 394 PALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIH 453
Query: 375 LCRDGSMKIYSRNGEDMTERYPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQV 434
DG+ +IYSRN E T +YP++ + + KSFI+D E VA+D+E+ KILPFQ+
Sbjct: 454 FMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQI 513
Query: 435 LSTRKRKGVELKDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFAN 494
LSTR RK V + D+KV VC++AFD+L LN + LI ++ RR+ L ++F G F FA
Sbjct: 514 LSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFAT 573
Query: 495 ELTTTNFDELQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDS 554
+T+ + DE+QK+LD SV G+GDS
Sbjct: 574 AVTSNDIDEIQKFLDASVD-----------------------------------VGIGDS 598
Query: 555 LDLVVLXXXXXXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTT 614
+DLV + FLL CY++D EEF++ CKIGTGFSD ML + + L+
Sbjct: 599 VDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQV 658
Query: 615 VEHPSTNVIYD-------------SSAPADVWFEPS------------------------ 637
+ P +++ S DVWFEP+
Sbjct: 659 IATPKHEFLFNCNDSNIQQYYRVGDSLNPDVWFEPTEVGLCLLFRHSIVWVEMKGKKYVC 718
Query: 638 -MLFEVLTADLSLSPVYKA--GFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQVIEFYE 694
++EV ADL++SPV++A G KGISLRFPR +R+R+DK +ATSS+Q+ + Y+
Sbjct: 719 LKVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADLYQ 778
Query: 695 SQAH 698
+Q H
Sbjct: 779 AQKH 782
>SPBC713.06 [L] KOG0967 ATP-dependent DNA ligase I
Length = 774
Score = 370 bits (949), Expect = e-102
Identities = 203/613 (33%), Positives = 340/613 (55%), Gaps = 18/613 (2%)
Query: 99 FAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXXXXXX 158
++ L +TF I T SR+ I + + FL ++L DP+SL+ +L +
Sbjct: 162 YSSLANTFSLISSTKSRIRIVTLLTNFLLTLLYADPDSLIATVWLCTNSIAPNFYGKNLG 221
Query: 159 XXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEVFNN 218
K + E CG + ++N + + GD G++A +A+ T+ +P+PLT+ +V++
Sbjct: 222 VGPAMYS-KALKEVCGITASALKNLWNKYGDPGDVAFEAKVSVRTLSRPEPLTIKKVYST 280
Query: 219 LVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISVSKAI 278
L+ IA SNG +Q+RK L K +L + E +++ RS+ LRIG + T+L S+SKA
Sbjct: 281 LLKIADSNGNGAQNRKLELTKFLLISSNAEEVRYIGRSIMQNLRIGAVQNTMLASLSKAF 340
Query: 279 LTHEHNGQ------EPSTEMVEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHIKLR 332
++ + + + Q E +++ +F QVP+Y +++ L+ GI NL ++ +R
Sbjct: 341 FIFDNQNEIFNFNSDSLQQQFRQGEEIVKQSFFQVPDYNILVATLLREGIENLKDNMSIR 400
Query: 333 PGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGEDMT 392
PGIP++PML TK++ +L+R F+CE+KYDG+RAQ+H R G++KI+SR+ E++T
Sbjct: 401 PGIPVKPMLGSITKNLQHMLERLTDHNFSCEFKYDGQRAQIHCDRLGNIKIFSRHLEEIT 460
Query: 393 ERYPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELKDVKVRV 452
R+P++ ++ L + FI++ E VA D+ G+IL FQ LSTR+RK V + D+ + V
Sbjct: 461 GRFPDV-IEVAQLALKHSCDFIIEGELVAIDKSNGQILDFQKLSTRERKKVTVADITIDV 519
Query: 453 CLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQKYLDQSV 512
C++ FDI+ + + + ERR++ + FN +F F + L T +Q++ ++
Sbjct: 520 CVFVFDIMFCDGKSCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETNEEQSIQEFFSLAI 579
Query: 513 KDSCEGLMVKMLEGEESH----YEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXX 568
+ CEGLMVK+L G S YEP KR W+K+K+DY + +SLDLV +
Sbjct: 580 TNKCEGLMVKVLNGTNSKFPSTYEPDKRGEGWIKVKQDY-DDEFESLDLVPIGAWYGNGR 638
Query: 569 XXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDL---YTKLKDTTVEHPSTNVIYD 625
LL YN D+ +E CK +GFSD+ ++L Y+ + P N
Sbjct: 639 KAGWFSPILLAVYNPDTGAYEAVCKCMSGFSDQFYKELTQKYSLESGNSSLKPIYNFCET 698
Query: 626 SSAPADVWFEPSMLFEVLTADLSLSPVYKA--GFEAFGKGISLRFPRFVRIRDDKNVTDA 683
++F P ++E+ A ++ SP YKA G +G+S+RFPRF+R+R DK DA
Sbjct: 699 GKVTPQIYFAPQEVWEIKGAQITSSPAYKAALGLIQDDRGLSIRFPRFIRVRSDKGPEDA 758
Query: 684 TSSDQVIEFYESQ 696
+++ + + Y Q
Sbjct: 759 STNSILADMYMKQ 771
>At1g66730_2 [L] KOG0967 ATP-dependent DNA ligase I
Length = 684
Score = 340 bits (873), Expect = 3e-93
Identities = 211/647 (32%), Positives = 351/647 (53%), Gaps = 53/647 (8%)
Query: 98 PFAELCDTFQAIEVTSSRL-AITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXXXX 156
P+ L TF ++E ++ A++ +C+ F S+ PE ++P YL +K
Sbjct: 33 PYIHLVRTFASVESEKGKIKAMSMLCNMFR-SLFALSPEDVLPAVYLCTNKIAADHENIE 91
Query: 157 XXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEVF 216
+ EACG S +R+ Y +GDLG++A R Q + P PL V +VF
Sbjct: 92 LNIGGSLIS-SALEEACGISRSTVRDMYNSLGDLGDVAQLCRQTQKLLVPPPPLLVRDVF 150
Query: 217 NNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISVSK 276
+ L I+ G S K +LI K++ +C+ E KFL+R+L LRIG +TVL ++ +
Sbjct: 151 STLRKISVQTGTGSTRLKKNLIVKLMRSCREKEIKFLVRTLARNLRIGAMLRTVLPALGR 210
Query: 277 AILTH----EHNGQEPST---EMVEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHI 329
AI+ + +HN + + E +E + + +A+ +P+ ++++ + I +
Sbjct: 211 AIVMNSFWNDHNKELSESCFREKLEGVSAAVVEAYNILPSLDVVVPSLMDKDIEFSTSTL 270
Query: 330 KLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGE 389
+ PGIP++PMLAK K + E + Q FTCEYKYDG+RAQ+H DG++ I+SRNG+
Sbjct: 271 SMVPGIPIKPMLAKIAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLDGTVCIFSRNGD 330
Query: 390 DMTERYPEIDVKHYVKDLG--ATKSFIVDSEAVAWDQEQG-KILPFQVLSTRKRKG---- 442
+ T R+P D+ +K A ++F++D+E VA D+ G K++ FQ LSTR+R
Sbjct: 331 ETTSRFP--DLVDVIKQFSCPAAETFMLDAEVVATDRINGNKLMSFQELSTRERGSKDAL 388
Query: 443 VELKDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQ-GQFDFANELTTT-- 499
+ + +KV VC++ FDI+ +N E L+ ERR+ L + F T+ G ++A E+T +
Sbjct: 389 ITTESIKVEVCVFVFDIMFVNGEQLLALPLRERRRRLKEVFPETRPGYLEYAKEITVSAT 448
Query: 500 ---------NFDELQK---YLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDY 547
N D L + +L+++ + SCEG+MVK L+ + Y P+KRS +WLK+K+DY
Sbjct: 449 VGAEEASLNNHDTLSRINAFLEEAFQSSCEGIMVKSLD-VNAGYCPTKRSDSWLKVKRDY 507
Query: 548 LEGVGDSLDLVVLXXXXXXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFSD------- 600
++G+GD+LDLV + FL+ C+N ++EEF++ C++ +GFSD
Sbjct: 508 VDGLGDTLDLVPIGAWYGNGRKAGWYSPFLMACFNPETEEFQSVCRVMSGFSDAFYIEVM 567
Query: 601 --EMLQDLYTKLKDTTVEHPSTNVI-------YDSSAPADVWFEPSMLFEVLTADLSLSP 651
L L+ D E S + I Y + D+WF +++E+ AD ++SP
Sbjct: 568 KSSTLTLLFNDETDGMKEFYSEDKILAKKPPYYRTGETPDMWFSAEVVWEIRGADFTVSP 627
Query: 652 VYKA--GFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQVIEFYESQ 696
V+ A G +GIS+RFPRF+ D+N + +++ + E + +Q
Sbjct: 628 VHSASLGLVHPSRGISVRFPRFISKVTDRNPEECSTATDIAEMFHAQ 674
>SPAC20G8.01 [L] KOG0967 ATP-dependent DNA ligase I
Length = 474
Score = 278 bits (710), Expect = 3e-74
Identities = 154/390 (39%), Positives = 228/390 (57%), Gaps = 19/390 (4%)
Query: 50 EGDSAMPDETAAAPPVKSESSLSNITPPKSRGETLTPVP--------------SKLKFHS 95
E ++ + E + S SS S+ + TP+P KLK H+
Sbjct: 88 ERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPPLESNARNDKLKGHA 147
Query: 96 NIPFAELCDTFQAIEVTSSRLAITAICSKFLYSVLERDPESLVPITYLFIHKXXXXXXXX 155
FAE+ F IE TS RL I I + + +L P L+ YL I+K
Sbjct: 148 T--FAEMVKAFTKIENTSKRLEIIDIMGTYFFGILRDHPSDLLACVYLSINKLGPDYSGL 205
Query: 156 XXXXXXXXXXIKTISEACGKSIQQIRNKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEV 215
+K I E+ G+++QQI+ + ++GDLG +A +R QPTMFKP LT+ +
Sbjct: 206 ELGIGESII-MKAIGESTGQTLQQIKLSFHKVGDLGLVAQTSRQNQPTMFKPAALTIPFL 264
Query: 216 FNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKTVLISVS 275
F++L IA+ +G SQ+RK +IK++L++C+G E K+LIR+LE KLR+ LAEKT+L++++
Sbjct: 265 FDSLKKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPKYLIRALEGKLRLQLAEKTILVALA 324
Query: 276 KAILTH--EHNGQEPSTEMVEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHIKLRP 333
A + + NG++ S + + E ++RD +CQ+P+Y++I+ +++G+ L + KL P
Sbjct: 325 NATAQYHADKNGEKLSQQDRIEGEQILRDVYCQLPSYDLIVPHLIEHGLGTLRETCKLTP 384
Query: 334 GIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGEDMTE 393
GIP +PMLAKPTK ISEVL+ F FTCEYKYDGERAQVH DG ++SRN E+M+
Sbjct: 385 GIPTKPMLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENMSV 444
Query: 394 RYPEIDVKHYVKDLGATKSFIVDSEAVAWD 423
RYP+I V +SFI+D EAV WD
Sbjct: 445 RYPDISVSVSKWKKPDARSFILDCEAVGWD 474
>Hs7710126 [L] KOG4437 ATP-dependent DNA ligase III
Length = 922
Score = 159 bits (403), Expect = 1e-38
Identities = 143/500 (28%), Positives = 229/500 (45%), Gaps = 56/500 (11%)
Query: 210 LTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKT 269
LT+ EV L+ ++K +D Q + ++ + + C + K +IR ++ L++ K
Sbjct: 285 LTIQEVDEFLLRLSKLTKEDEQQQA---LQDIASRCTANDLKCIIRLIKHDLKMNSGAKH 341
Query: 270 VLISVSKAILTHEHNGQEPSTEMVEQAESLIRDA--FCQVPNYEMIINVALQYGIMNLNQ 327
VL A+ + + + S + + E ++ +A + P ++V Q +M
Sbjct: 342 VL----DALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSV--QASLMT--- 392
Query: 328 HIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRN 387
P+QPMLA+ KS+ + + F+ E KYDGER QVH ++G Y
Sbjct: 393 --------PVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVH--KNGDHFSYFSR 441
Query: 388 GEDMTERYPEIDVKHYVKD-LGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELK 446
+ K Y+ S I+DSE + D + GK LPF L K+ +
Sbjct: 442 SLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQ-- 499
Query: 447 DVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQK 506
VCL+ FD + ND L+++ ERR+ L D + F+ T +L
Sbjct: 500 --DANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLAD 557
Query: 507 YLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLE--GVGDSLDLVVLXXXX 564
+ + +++ EGL++K ++G YEP K R+WLK+KKDYL + D+ DLVVL
Sbjct: 558 MITRVIQEGLEGLVLKDVKGT---YEPGK--RHWLKVKKDYLNEGAMADTADLVVLGAFY 612
Query: 565 XXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTV-EHPS---- 619
FL+GCY+ S+++ T K G D L L +L + + PS
Sbjct: 613 GQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPS 672
Query: 620 ---TNVIY--DSSAPADVWFEPSMLFEVLTADLSLSPVYKAGFEAFGKGISLRFPRFVRI 674
N IY D P + + ++E+ A+ S S + A GIS+RFPR RI
Sbjct: 673 WLKVNKIYYPDFIVPDP---KKAAVWEITGAEFSKSEAHTA------DGISIRFPRCTRI 723
Query: 675 RDDKNVTDATSSDQVIEFYE 694
RDDK+ AT+ Q+ E Y+
Sbjct: 724 RDDKDWKSATNLPQLKELYQ 743
>Hs4504995 [L] KOG4437 ATP-dependent DNA ligase III
Length = 862
Score = 159 bits (403), Expect = 1e-38
Identities = 143/500 (28%), Positives = 229/500 (45%), Gaps = 56/500 (11%)
Query: 210 LTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKT 269
LT+ EV L+ ++K +D Q + ++ + + C + K +IR ++ L++ K
Sbjct: 285 LTIQEVDEFLLRLSKLTKEDEQQQA---LQDIASRCTANDLKCIIRLIKHDLKMNSGAKH 341
Query: 270 VLISVSKAILTHEHNGQEPSTEMVEQAESLIRDA--FCQVPNYEMIINVALQYGIMNLNQ 327
VL A+ + + + S + + E ++ +A + P ++V Q +M
Sbjct: 342 VL----DALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSV--QASLMT--- 392
Query: 328 HIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRN 387
P+QPMLA+ KS+ + + F+ E KYDGER QVH ++G Y
Sbjct: 393 --------PVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVH--KNGDHFSYFSR 441
Query: 388 GEDMTERYPEIDVKHYVKD-LGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELK 446
+ K Y+ S I+DSE + D + GK LPF L K+ +
Sbjct: 442 SLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQ-- 499
Query: 447 DVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQK 506
VCL+ FD + ND L+++ ERR+ L D + F+ T +L
Sbjct: 500 --DANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLAD 557
Query: 507 YLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLE--GVGDSLDLVVLXXXX 564
+ + +++ EGL++K ++G YEP K R+WLK+KKDYL + D+ DLVVL
Sbjct: 558 MITRVIQEGLEGLVLKDVKGT---YEPGK--RHWLKVKKDYLNEGAMADTADLVVLGAFY 612
Query: 565 XXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTV-EHPS---- 619
FL+GCY+ S+++ T K G D L L +L + + PS
Sbjct: 613 GQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPS 672
Query: 620 ---TNVIY--DSSAPADVWFEPSMLFEVLTADLSLSPVYKAGFEAFGKGISLRFPRFVRI 674
N IY D P + + ++E+ A+ S S + A GIS+RFPR RI
Sbjct: 673 WLKVNKIYYPDFIVPDP---KKAAVWEITGAEFSKSEAHTA------DGISIRFPRCTRI 723
Query: 675 RDDKNVTDATSSDQVIEFYE 694
RDDK+ AT+ Q+ E Y+
Sbjct: 724 RDDKDWKSATNLPQLKELYQ 743
>7299616 [L] KOG4437 ATP-dependent DNA ligase III
Length = 734
Score = 142 bits (358), Expect = 2e-33
Identities = 133/523 (25%), Positives = 224/523 (42%), Gaps = 47/523 (8%)
Query: 186 EIGDLGEIAMQ----ARNVQPTMFKPKPLTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKM 241
E GD+ E + ++ ++P K L + EV L+ + + +D Q+ L++K+
Sbjct: 96 EQGDVSETLRKHFAASKKLKPQ--KQSKLYLQEVEEMLLHLVERTKEDEQT---DLLQKL 150
Query: 242 LTACKGYEAKFLIRSLESKLRIGLAEKTVLISVSKAILTHEHNGQEPSTEMVEQAESLIR 301
+ + + IR ++ LRI + +L + + ++ +VEQ +
Sbjct: 151 CSKATDLDLRTFIRLVKHDLRINARARHILDAFGPDAYPAYQSSRD-LVAIVEQFATKEN 209
Query: 302 DAFCQVPNYEMIINVALQYGIMNLNQHIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFT 361
+ P + + +M P+ PMLA P KS+ + + T
Sbjct: 210 KNYASSPVKKTKKTSSSAIQVMT-----------PISPMLASPCKSVEDAFKK-SPTGLY 257
Query: 362 CEYKYDGERAQVHLCRDGSMKIYSRNGEDMTERYPEIDVKHYVKDLGATKSFIVDSEAVA 421
E KYDGER Q+H + K +SRN + + + K+ + I+DSE +
Sbjct: 258 SEIKYDGERVQIHK-QGNDFKFFSRNLKPVVDHKIRALKKYIPQAFPGGGEMILDSEIIL 316
Query: 422 WDQEQGKILPFQVLSTRKRKGVELKDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLD 481
D + G +LPF L K++ VCL+ FD + + E L F +RR+IL
Sbjct: 317 VDTDTGALLPFGSLGAHKKQTF----ANAAVCLFVFDCILYDGEDLTQLPFRKRREILEQ 372
Query: 482 TFNGTQGQFDFANELTTTNFDELQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWL 541
+ + EL + + + EG+++K S Y+P KR NWL
Sbjct: 373 NIQPIKSHVQLSESEFLKTTRELAAMTARVLHANLEGVVLK---SPTSTYQPGKR--NWL 427
Query: 542 KLKKDYL-EG-VGDSLDLVVLXXXXXXXXXXXXXXXFLLGCYNLDSEEFETCCKIGTGFS 599
K+KKDYL +G + D+ DLVVL FL+GCY+ ++T K+ +G
Sbjct: 428 KVKKDYLFDGKMADTADLVVLGAWYGSGKKGGTLSIFLMGCYDAFGRLWKTVTKVHSGLD 487
Query: 600 DEMLQDLYTKLKDTTVEHPSTNVIYDSSAPADVWFEPSMLFEVLTADLSLSPVYKAGFEA 659
D +++ L T E N I P+ + S++ +VL D PV++
Sbjct: 488 DATNAEVHKSLIKLT-ERADANAI-----PSWLLCSKSLVPDVLAKDPMKMPVWEITGAE 541
Query: 660 FGK-------GISLRFPRFVRIRDDKNVTDATSSDQVIEFYES 695
F K GIS+RFPR R R DK+ +A + + +E+
Sbjct: 542 FTKSDAHTASGISVRFPRITRRRSDKSAKEANDLAHLEDLFEA 584
>Hs4504997 [L] KOG0966 ATP-dependent DNA ligase IV
Length = 844
Score = 131 bits (329), Expect = 4e-30
Identities = 133/523 (25%), Positives = 234/523 (44%), Gaps = 64/523 (12%)
Query: 188 GDLGEIAMQARNV-QPTMFKPKPLTVGEVFNNLVSIAKSNGKDSQSRKGSLIKK----ML 242
GD G+ AM A V +P + LT+ +V + L SIA +N +++ LIKK ++
Sbjct: 53 GDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNS----AKRKDLIKKSLLQLI 108
Query: 243 TACKGYEAKFLIRSLESKLRIGLAEKTVLISVSKAILTHEHNGQEPSTEMVEQAESLIRD 302
T E K+LIR + L++G++++T+ SV HN T +E+ + D
Sbjct: 109 TQSSALEQKWLIRMIIKDLKLGVSQQTIF-SVFHNDAAELHN----VTTDLEKVCRQLHD 163
Query: 303 AFCQVPNYEMIINVALQYGIMNLNQHIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTC 362
+ + + + A + PMLA I + + F
Sbjct: 164 PSVGLSDISITLFSASK-------------------PMLAA-IADIEHIEKDMKHQSFYI 203
Query: 363 EYKYDGERAQVHLCRDGSM-KIYSRNGEDMTERYPEIDVKHYVKDLGATKSFIVDSEAVA 421
E K DGER Q+H +DG + K +SRNG + T+++ + + +F D +
Sbjct: 204 ETKLDGERMQMH--KDGDVYKYFSRNGYNYTDQFGASPTEGSLTPF-IHNAFKADIQICI 260
Query: 422 WDQEQGKILPFQVLSTRKRKGVELK----DVKVRVCLYAFDILCLNDEPLINKSFHERRQ 477
D E P +K ++K D ++ C FD+L +N++ L +++ +R +
Sbjct: 261 LDGEMMAYNPNTQTFMQKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYE 320
Query: 478 ILLDTFNGTQGQFDFANELTTTNFDELQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRS 537
IL F G+ + + +E+ L++++ EG+MVK S Y+P KR
Sbjct: 321 ILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNEAIDKREEGIMVKQ---PLSIYKPDKRG 377
Query: 538 RNWLKLKKDYLEGVGDSLDLVVLXXXXXXXXXXXXXXXFLLGCYNL-----DSEEFETCC 592
WLK+K +Y+ G+ D LD++++ FL F T
Sbjct: 378 EGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLS 437
Query: 593 KIGTGFSDEMLQDLYTKL----KDTTVEHPSTNVIYDSSAPADVWFEP--SMLFEVLTAD 646
++G+G + + L DL KL K + P ++++ + P +V+ EP S++ ++ A+
Sbjct: 438 RVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKP-EVYIEPCNSVIVQIKAAE 496
Query: 647 LSLSPVYKAGFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQV 689
+ S +YK G +LRFPR +IRDDK + + D +
Sbjct: 497 IVPSDMYKT-------GCTLRFPRIEKIRDDKEWHECMTLDDL 532
>YOR005c [L] KOG0966 ATP-dependent DNA ligase IV
Length = 944
Score = 112 bits (281), Expect = 1e-24
Identities = 98/408 (24%), Positives = 172/408 (42%), Gaps = 58/408 (14%)
Query: 329 IKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDG-SMKIYSRN 387
+ ++ G P LAK E + R F E K DGER QVH G S+K +SR
Sbjct: 246 LSIKVGFAFAPQLAKKVNLSYEKICRTLHDDFLVEEKMDGERIQVHYMNYGESIKFFSRR 305
Query: 388 GEDMTERYPEI----DVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGV 443
G D T Y + +++ + K ++D E V +D ++ ILPF ++ ++ +
Sbjct: 306 GIDYTYLYGASLSSGTISQHLRFTDSVKECVLDGEMVTFDAKRRVILPFGLVKGSAKEAL 365
Query: 444 E---LKDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTN 500
+ +V FD+L LN L H+R+Q L + + +
Sbjct: 366 SFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYLNSILSPLKNIVEIVRSSRCYG 425
Query: 501 FDELQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVVL 560
+ ++K L+ ++ EG+++K S Y + R+ NW+K+K +YLE G++LDL+V+
Sbjct: 426 VESIKKSLEVAISLGSEGVVLKYYN---SSYNVASRNNNWIKVKPEYLEEFGENLDLIVI 482
Query: 561 XXXXXXXXXXXXXXXFLLGCYNLDSEEFE------------------------------T 590
F+LG LD EE++ +
Sbjct: 483 ------GRDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILS 536
Query: 591 CCKIGTGFSDEMLQDLYTKL-----KDTTVEHPSTNVIYDSSAPADVWFEP--SMLFEVL 643
C I G S E +++ K + + V P++ + + S PA+ W +P S++ E+
Sbjct: 537 FCSIANGISQEEFKEIDRKTRGHWKRTSEVAPPASILEFGSKIPAE-WIDPSESIVLEIK 595
Query: 644 TADLSLSPVYKAGFEAFGKGISLRFPRFVRIRDDKNVTDATSSDQVIE 691
+ L + + + + +L RIR DK TD + + + E
Sbjct: 596 SRSLDNT---ETNMQKYATNCTLYGGYCKRIRYDKEWTDCYTLNDLYE 640
>SPCC1183.05c [L] KOG0966 ATP-dependent DNA ligase IV
Length = 923
Score = 101 bits (252), Expect = 3e-21
Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 42/377 (11%)
Query: 338 QPMLAK-PTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGEDMTERY- 395
QP LA K + + L+ F E K DGER Q+H+ G + YSRN T Y
Sbjct: 267 QPQLANFKKKDLHQTLEAMGNKPFWIEEKLDGERIQLHMS-SGKFQFYSRNARSYTYAYG 325
Query: 396 -----PEIDVKHYVKDLGA----TKSFIVDSEAVAWDQEQGKILPFQVLSTRKRKGVELK 446
+ + Y+ +GA I+D E V WD ++P+ L +
Sbjct: 326 SSYFDEQSRLTQYI--IGAFDKRISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSSHS 383
Query: 447 DVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDTFNGTQGQFDFANELTTTNFDELQK 506
+ FDIL LN + L+ S RR+IL + + ++++
Sbjct: 384 SYSPYYVV--FDILYLNGKSLVKYSLESRRRILEKVIVRESHRMSILPYKVGSTIEDIEA 441
Query: 507 YLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXXXXX 566
L +++ EGL++K G Y +R +W+K+K YL+G G+ LD ++L
Sbjct: 442 ELRNVIQEGSEGLVIKKPSGS---YHLGERMDDWIKVKPYYLQGFGEDLDCLILGGYFGR 498
Query: 567 XXXXXXXXXFLLGCYNLD------SEEFETCCKIGTGFS-------DEMLQDLYTKLKDT 613
FL G +D SE+F++ ++G GF+ + + +
Sbjct: 499 GKQSGKINSFLCG-LRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKWLPWSSD 557
Query: 614 TVEHPSTNVIYDSSAPADVWFEP--SMLFEVLTADLSLSPVYKAGFEAFGKGISLRFPRF 671
+E+ D+W P S++ ++ A++ +S +K + +LRFPR
Sbjct: 558 ALEYMELAGTKQDFEKPDMWIHPKDSLVLQIKAAEVVVSNRFKTNY-------TLRFPRL 610
Query: 672 VRIRDDKNVTDATSSDQ 688
++R D++ DA + ++
Sbjct: 611 EKVRLDRSWKDALTINE 627
>At5g57160 [L] KOG0966 ATP-dependent DNA ligase IV
Length = 1184
Score = 94.7 bits (234), Expect = 4e-19
Identities = 112/505 (22%), Positives = 211/505 (41%), Gaps = 68/505 (13%)
Query: 210 LTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKMLTACKGYEAKFLIRSLESKLRIGLAEKT 269
LT+ E+ + L +A S ++++ K ++ ++ E K++IR + L++G++EK+
Sbjct: 125 LTIKELNDLLDRLASS---ENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 270 VLISVSKAILTHEHNGQEPSTEMVEQAESLIRDAFCQVPNYEMIINVALQYGIMNLNQHI 329
+ E AE D F + +++ + Q I
Sbjct: 182 IF------------------QEFHPDAE----DLFNVTCDLKLVCEKLRDRHQRHKRQDI 219
Query: 330 KLRPGIPLQPMLAKPTKSISEVLDRFQGTKFTCEYKYDGERAQVHLCRDGS-MKIYSRNG 388
++ G ++P LA ++ + G E K+DG+R Q+H ++G+ + +SRN
Sbjct: 220 EV--GKAVRPQLAMRIGDVNAAWKKLHGKDVVAECKFDGDRIQIH--KNGTDIHYFSRNF 275
Query: 389 EDMTERYPEIDVKHYVKDLGATKSFIVDSEAVAWDQEQGKILPF---QVLSTRKRKGVEL 445
D +E Y V+++ K I+D E + WD + F Q ++ R+G++
Sbjct: 276 LDHSE-YAHAMSDLIVQNILVDKC-ILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDS 333
Query: 446 KDVKVRVCLYAFDILCLNDEPLINKSFHERRQILLDT--FNGTQGQFDFANELTTTNFDE 503
+ L + K R ++L+ N + + + + +
Sbjct: 334 HKQERHELLKK-----------VVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAAD 382
Query: 504 LQKYLDQSVKDSCEGLMVKMLEGEESHYEPSKRSRNWLKLKKDYLEGVGDSLDLVVLXXX 563
++++ ++V++ EG+++K LE S +EP RS W+KLK +Y+ G LD++++
Sbjct: 383 VERFFKETVENRDEGIVLKDLE---SKWEPGDRSGKWMKLKPEYIR-AGADLDVLIIGGY 438
Query: 564 XXXXXXXXXXXXFLLGC-----YNLDSEEFETCCKIGTGFSDEMLQDLYTKLKD--TTVE 616
FL+ N+ F + C++GTG SD+ L + +KLK E
Sbjct: 439 YGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNE 498
Query: 617 HPST------NVIYDSSAPADVWFEPSMLFEVLTADLSLSPVYKAGFEAFGKGISLRFPR 670
HP V S DVW + +L+ + + E F SLRFPR
Sbjct: 499 HPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRS---EVFVAPYSLRFPR 555
Query: 671 FVRIRDDKNVTDATSSDQVIEFYES 695
++R DK + +E S
Sbjct: 556 IDKVRYDKPWHECLDVQAFVELVNS 580
>7292907 [L] KOG0966 ATP-dependent DNA ligase IV
Length = 918
Score = 84.0 bits (206), Expect = 7e-16
Identities = 123/521 (23%), Positives = 207/521 (39%), Gaps = 62/521 (11%)
Query: 182 NKYREIGDLGEIAMQARNVQPTMFKPKPLTVGEVFNNLVSIAKSNGKDSQSRKGSLIKKM 241
N YR+ GD+ ++ R P P L + E+ L +IA +D++ ++ LI+
Sbjct: 117 NMYRDYGDVVYSVLKPRCFNP----PSNLRLKEIHQMLDTIAN---EDTEVKQQQLIR-F 168
Query: 242 LTACKGYEAKFLIRSLESKLRIGLAEKTVLISVSKAILTHEHNGQEPSTEMVEQAESLIR 301
E K+LIR L L +G+ E+ + +L + + +L+
Sbjct: 169 TEQASPEEQKWLIRLLLKSLGLGIGEQKIF-----GVLHPKAQDIYQRCSDLGHVCNLLA 223
Query: 302 DAFCQVPNYEMIINVALQYGIMNLNQHIKLRPGIPLQPMLAKPTKSISEVLDRFQGTKFT 361
D + + + + + + +N + +RP ++PML + + ++ + Q
Sbjct: 224 D---RTTDLDASSSKDSKAAVKFVNLNSVIRPFHQIRPMLCE--RFPGDIQELMQSDVLY 278
Query: 362 CEYKYDGERAQVHLCRDGSMKIYSRNGEDMTER----YPEIDVKHYVKDL--GATKSFIV 415
E K DGER Q+H+ R G SRNG D T Y + ++ L +S I+
Sbjct: 279 LETKMDGERFQLHIDR-GRFMYISRNGVDYTRNFGHSYDHGTLTPKLRGLLPLGLESIIL 337
Query: 416 DSEAVAWDQEQGKILPFQVLSTRKRKGVELKDVKV----RVCLYAFDILCLNDEPLINKS 471
D E + WD + L F+ K + ++K +K + C +D+L N + L++ +
Sbjct: 338 DGEMMVWDTNK---LRFR----EKGENTDVKSLKPEGSWQPCFVVYDLLYFNGQSLLDHT 390
Query: 472 FHERRQILLDTFNGTQGQFDFANELTTTNFDELQKYLDQSVKDSCEGLMVKMLEGEESHY 531
+ +R L G + E + Q++ EG+++K + S Y
Sbjct: 391 YIQRAYKLQKLIVEQSGVLQLMRARKIGSVQEFNELFQQALDSHAEGIVLKK---QGSRY 447
Query: 532 EPSKR-SRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXXXXXXXXXFLLGCYN---LDSEE 587
+P R W K K DY++G+ D++++ FLLG S
Sbjct: 448 QPGVRLGGGWYKDKADYIKGLITEFDVLII--GAFYNRKRTFVDSFLLGVLQPAPPGSSN 505
Query: 588 FETCCKIG-----TGFSDEMLQDLYTKLKDTTVEHPSTNVIY---DSSAPADVWFEP--S 637
IG T + L D E P Y + S D+W EP S
Sbjct: 506 RPEVFSIGVVANNTKQRGVLNHTLKPHWHDVVNEPPPLWFHYKPKERSGCPDLWIEPQNS 565
Query: 638 MLFEVLTADLSLSPVYKAGFEAFGKGISLRFPRFVRIRDDK 678
++ +V ADL A AF SL FPR RDDK
Sbjct: 566 VILQVKAADL-------APNGAFFTRKSLHFPRTEMKRDDK 599
>CE00757 [L] KOG0966 ATP-dependent DNA ligase IV
Length = 729
Score = 55.8 bits (133), Expect = 2e-07
Identities = 59/296 (19%), Positives = 118/296 (38%), Gaps = 38/296 (12%)
Query: 352 LDRFQGTKFTCEYKYDGERAQVHLCRDGSMKIYSRNGEDMTERYPEIDV----------K 401
+++F G KF + K+DGE +H + + ++RN D ++ Y + +
Sbjct: 246 IEKFGGQKFFLQTKFDGENVLLHK-KGNEYRWFTRNNNDFSKEYGDSSMAIGKLSSRIHS 304
Query: 402 HYVKDLGATKSFIVDSEAVAWDQEQGKIL---------PFQVLSTRKRKGVELKDVKVRV 452
+ K+ +S I + E + WD++ K+ QVLS R K D ++
Sbjct: 305 FFNKE---CESAIFNCELMLWDKKTKKLCRHNDASTTSDAQVLSFRHVK----PDDNQQL 357
Query: 453 CLYAFDILCLNDEPLINKSFHERRQIL--LDTFNGTQGQFDFANELTTTNFDELQKYLDQ 510
+ FD+L LN +P H+R ++L + A + +++Q++ +
Sbjct: 358 TVVLFDLLYLNGKPFFGAPLHQRLEMLKIAPLKKEREDTIFVAKHEEGSKKEDIQQFFEI 417
Query: 511 SVKDSCEGLMVKMLEGEESHYEPSKR--SRNWLKLKKDYLEGVGDSLDLVVLXXXXXXXX 568
++ ++ EG++VK +S Y +R S W KLK DL +
Sbjct: 418 AMANNEEGIVVKR---TDSVYVKGQRSASNGWFKLK----PSASKDCDLDLALVAVHPGA 470
Query: 569 XXXXXXXFLLGCYNLDSEEFETCCKIGTGFSDEMLQDLYTKLKDTTVEHPSTNVIY 624
+ ++ +++++ C G SD + + + + E P Y
Sbjct: 471 GRNGKTLYRFAAFDEKTQDYKLCLSCSYGLSDTVREAIRFEYGQLLEEAPEELTFY 526
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,465,617
Number of Sequences: 60738
Number of extensions: 1661492
Number of successful extensions: 4859
Number of sequences better than 1.0e-05: 19
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4754
Number of HSP's gapped (non-prelim): 29
length of query: 700
length of database: 30,389,216
effective HSP length: 113
effective length of query: 587
effective length of database: 23,525,822
effective search space: 13809657514
effective search space used: 13809657514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)