ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3152.1 good J KOG3452 Translation, ribosomal structure and biogenesis 60S ribosomal protein L36
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3152.1 1063848 1063579 -90
(90 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL249c-a [J] KOG3452 60S ribosomal protein L36 149 9e-37
YMR194w [J] KOG3452 60S ribosomal protein L36 147 3e-36
SPCC970.05 [J] KOG3452 60S ribosomal protein L36 103 5e-23
SPBC405.07 [J] KOG3452 60S ribosomal protein L36 102 7e-23
At2g37600 [J] KOG3452 60S ribosomal protein L36 87 4e-18
At3g53740 [J] KOG3452 60S ribosomal protein L36 86 7e-18
At5g02450 [J] KOG3452 60S ribosomal protein L36 86 9e-18
Hs16117794 [J] KOG3452 60S ribosomal protein L36 82 1e-16
CE00739 [J] KOG3452 60S ribosomal protein L36 82 2e-16
Hs17451943 [J] KOG3452 60S ribosomal protein L36 68 2e-12
7290065 [J] KOG3452 60S ribosomal protein L36 66 9e-12
Hs17486632 [J] KOG3452 60S ribosomal protein L36 63 8e-11
Hs17441008 [J] KOG3452 60S ribosomal protein L36 46 1e-05
ECU06g1120 [J] KOG3452 60S ribosomal protein L36 44 4e-05
Hs19913408 [B] KOG0355 DNA topoisomerase type II 28 2.2
CE27289 [K] KOG0963 Transcription factor/CCAAT displacement prot... 28 2.2
CE27288_1 [K] KOG0963 Transcription factor/CCAAT displacement pr... 28 2.2
SPAC4G8.07c [J] KOG2187 tRNA uracil-5-methyltransferase and rela... 27 3.7
At1g06060 [Z] KOG2659 LisH motif-containing protein 27 4.9
Hs9961244 [U] KOG0058 Peptide exporter ABC superfamily 27 6.4
SPAC23C11.03 [A] KOG2600 U3 small nucleolar ribonucleoprotein (s... 26 8.3
>YPL249c-a [J] KOG3452 60S ribosomal protein L36
Length = 100
Score = 149 bits (375), Expect = 9e-37
Identities = 73/90 (81%), Positives = 83/90 (92%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKGKKV Q+TPAPKISY+KGAAS RT FVRS+V+E+A L+PYERRLI+LIRN+GEKRAR
Sbjct: 11 LNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRAR 70
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASRRH 90
KVAKKRLG+F RAKAKVEEMN II ASRRH
Sbjct: 71 KVAKKRLGSFTRAKAKVEEMNNIIAASRRH 100
>YMR194w [J] KOG3452 60S ribosomal protein L36
Length = 100
Score = 147 bits (370), Expect = 3e-36
Identities = 72/90 (80%), Positives = 82/90 (91%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKGKKV +TPAPKISY+KGAAS RT FVRS+V+E+A L+PYERRLI+LIRN+GEKRAR
Sbjct: 11 LNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRAR 70
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASRRH 90
KVAKKRLG+F RAKAKVEEMN II ASRRH
Sbjct: 71 KVAKKRLGSFTRAKAKVEEMNNIIAASRRH 100
>SPCC970.05 [J] KOG3452 60S ribosomal protein L36
Length = 99
Score = 103 bits (256), Expect = 5e-23
Identities = 52/88 (59%), Positives = 68/88 (77%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKGK + + + S RKG S+RT+FVRSIV+EVA APYERR++ELIRN+ +KRAR
Sbjct: 9 LNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRAR 68
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASR 88
K+AKKRLGT RAK K+EE+ +I +SR
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 [J] KOG3452 60S ribosomal protein L36
Length = 99
Score = 102 bits (255), Expect = 7e-23
Identities = 52/88 (59%), Positives = 67/88 (76%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKGK + + + S RKG S+RT FVRSIV+EVA APYERR++ELIRN+ +KRAR
Sbjct: 9 LNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRAR 68
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASR 88
K+AKKRLGT RAK K+EE+ +I +SR
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>At2g37600 [J] KOG3452 60S ribosomal protein L36
Length = 113
Score = 87.0 bits (214), Expect = 4e-18
Identities = 42/88 (47%), Positives = 62/88 (69%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG V + AP+ + RKG S+RT F+R +++EVA +APYE+R+ EL++ +KRA
Sbjct: 14 LNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRAL 73
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASR 88
KVAK++LGT RAK K EEM+ ++ R
Sbjct: 74 KVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At3g53740 [J] KOG3452 60S ribosomal protein L36
Length = 112
Score = 86.3 bits (212), Expect = 7e-18
Identities = 43/88 (48%), Positives = 61/88 (68%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG V + AP+ RKG S+RT F+R+++KEVA APYE+R+ EL++ +KRA
Sbjct: 14 LNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 73
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASR 88
KVAK++LGT RAK K EEM+ ++ R
Sbjct: 74 KVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450 [J] KOG3452 60S ribosomal protein L36
Length = 108
Score = 85.9 bits (211), Expect = 9e-18
Identities = 42/88 (47%), Positives = 61/88 (68%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG V + P+ + RKG S+RT F+R+++KEVA APYE+R+ EL++ +KRA
Sbjct: 10 LNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 69
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASR 88
KVAK++LGT RAK K EEM+ ++ R
Sbjct: 70 KVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>Hs16117794 [J] KOG3452 60S ribosomal protein L36
Length = 105
Score = 82.4 bits (202), Expect = 1e-16
Identities = 40/89 (44%), Positives = 60/89 (66%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG KV + P+ S R+G ++ T FVR +++EV APYERR +EL++ + +KRA
Sbjct: 11 LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASRR 89
K KKR+GT RAK K EE++ ++ A R+
Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>CE00739 [J] KOG3452 60S ribosomal protein L36
Length = 142
Score = 81.6 bits (200), Expect = 2e-16
Identities = 39/89 (43%), Positives = 58/89 (64%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG QL + + KG AS++T VR +V+E+ APYERR++E++R + +KRA
Sbjct: 51 LNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRAL 110
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASRR 89
K K+R+GT RAK K EE+ +I A R+
Sbjct: 111 KFLKRRIGTHRRAKGKREELQNVIIAQRK 139
>Hs17451943 [J] KOG3452 60S ribosomal protein L36
Length = 105
Score = 68.2 bits (165), Expect = 2e-12
Identities = 34/87 (39%), Positives = 55/87 (63%)
Query: 3 KGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRARKV 62
KG KV + P+ S R+ ++ T FV +++EV APY+RR +EL++ + +K+A K
Sbjct: 13 KGHKVTKNVSKPRHSSRRRRLTKHTKFVWDMIREVCGFAPYKRRAMELLKVSKDKQALKF 72
Query: 63 AKKRLGTFGRAKAKVEEMNEIITASRR 89
KKR+G RAK K EE++ ++ A R+
Sbjct: 73 IKKRVGMHIRAKRKQEELSNVLAAMRK 99
>7290065 [J] KOG3452 60S ribosomal protein L36
Length = 115
Score = 65.9 bits (159), Expect = 9e-12
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 10/99 (10%)
Query: 1 MNKGKKVNQL-----TPAPKISYRKGAA-----SQRTTFVRSIVKEVASLAPYERRLIEL 50
+NKG K +++ T K+ +G+ ++ T F+R +V+EV APYE+R +EL
Sbjct: 11 LNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMEL 70
Query: 51 IRNAGEKRARKVAKKRLGTFGRAKAKVEEMNEIITASRR 89
++ + +KRA K K+RLGT RAK K EE++ I+T R+
Sbjct: 71 LKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRK 109
>Hs17486632 [J] KOG3452 60S ribosomal protein L36
Length = 105
Score = 62.8 bits (151), Expect = 8e-11
Identities = 31/89 (34%), Positives = 53/89 (58%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG K+ + P+ S G ++ T VR +++EV PYER +EL++ + +K+A
Sbjct: 11 LNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQAL 70
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASRR 89
K KKR+GT K K EE++ ++ +R+
Sbjct: 71 KFIKKRVGTHIHTKRKREELSNVLAITRK 99
>Hs17441008 [J] KOG3452 60S ribosomal protein L36
Length = 100
Score = 45.8 bits (107), Expect = 1e-05
Identities = 24/89 (26%), Positives = 48/89 (52%), Gaps = 5/89 (5%)
Query: 1 MNKGKKVNQLTPAPKISYRKGAASQRTTFVRSIVKEVASLAPYERRLIELIRNAGEKRAR 60
+NKG KV + P+ S + ++ T FV+ +++EV APYE +EL +K ++
Sbjct: 11 LNKGHKVTKNVSNPRHSCHRRCLTKHTKFVQDMIREVCGFAPYECHTMEL-----QKVSK 65
Query: 61 KVAKKRLGTFGRAKAKVEEMNEIITASRR 89
+ + F + + K EE++ ++ A ++
Sbjct: 66 AMELLKTSKFIKKRRKREELSNVLAAMKK 94
>ECU06g1120 [J] KOG3452 60S ribosomal protein L36
Length = 107
Score = 43.9 bits (102), Expect = 4e-05
Identities = 22/64 (34%), Positives = 41/64 (63%), Gaps = 1/64 (1%)
Query: 22 AASQRTTFVRSIVK-EVASLAPYERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVEEM 80
A +Q + F+ + V E++ L+P E++ I L+ +A+K+ +KRLG+ RA AKVE++
Sbjct: 41 AETQESRFLAAAVADEISGLSPLEKKAISLLEAKNNNKAQKLLRKRLGSHKRAVAKVEKL 100
Query: 81 NEII 84
++
Sbjct: 101 ARML 104
>Hs19913408 [B] KOG0355 DNA topoisomerase type II
Length = 1621
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 30 VRSIVKEVASLAPYERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVE 78
V+ + E +PY RR+I I ++K+ KK+ G A KVE
Sbjct: 1220 VKKLQLEETMPSPYGRRIIPEITAMKADASKKLLKKKKGDLDTAAVKVE 1268
>CE27289 [K] KOG0963 Transcription factor/CCAAT displacement protein CDP1
Length = 452
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/55 (32%), Positives = 27/55 (48%)
Query: 30 VRSIVKEVASLAPYERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVEEMNEII 84
VR + ++A L + IE N EK+A + RL K K++E NEI+
Sbjct: 146 VRKLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEIL 200
>CE27288_1 [K] KOG0963 Transcription factor/CCAAT displacement protein CDP1
Length = 464
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/55 (32%), Positives = 27/55 (48%)
Query: 30 VRSIVKEVASLAPYERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVEEMNEII 84
VR + ++A L + IE N EK+A + RL K K++E NEI+
Sbjct: 146 VRKLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEIL 200
>SPAC4G8.07c [J] KOG2187 tRNA uracil-5-methyltransferase and related
tRNA-modifying enzymes
Length = 527
Score = 27.3 bits (59), Expect = 3.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 44 ERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVEE 79
E R I I A KRARK++K+ RAK VEE
Sbjct: 54 ETRAISSISEAANKRARKLSKR------RAKKPVEE 83
>At1g06060 [Z] KOG2659 LisH motif-containing protein
Length = 213
Score = 26.9 bits (58), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 48 IELIRNAGEKRARKVAKKRLGTFGRAKAKVEEMNEII 84
+ELI A K K RL FG+ K VE++ +++
Sbjct: 98 VELICAGNCTEALKFGKTRLAPFGKVKKYVEKLEDVM 134
>Hs9961244 [U] KOG0058 Peptide exporter ABC superfamily
Length = 738
Score = 26.6 bits (57), Expect = 6.4
Identities = 19/60 (31%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 28 TFVRSIVKEVASLAP----YERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVEEMNEI 83
TFV S+V V+ +A Y R+L ++ +++ +A ++A++R+G +A +EM EI
Sbjct: 316 TFVLSVVPPVSIIAVIYGRYLRKLTKVTQDS-LAQATQLAEERIGNVRTVRAFGKEMTEI 374
>SPAC23C11.03 [A] KOG2600 U3 small nucleolar ribonucleoprotein (snoRNP) subunit -
Mpp10p
Length = 598
Score = 26.2 bits (56), Expect = 8.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 40 LAPYERRLIELIRNAGEKRARKVAKKRLGTFGRAKAKVEEMNEII 84
L+ YER L + E A VAKK G A +K N ++
Sbjct: 297 LSSYERDKARLTQQIRELEAENVAKKSWTMMGEATSKGRPSNSLL 341
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.129 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,214,002
Number of Sequences: 60738
Number of extensions: 126035
Number of successful extensions: 413
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 21
length of query: 90
length of database: 30,389,216
effective HSP length: 66
effective length of query: 24
effective length of database: 26,380,508
effective search space: 633132192
effective search space used: 633132192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)