ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3158 good J KOG3278 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L28
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIV3158 1065728 1064964 -255 
         (255 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YMR193w [J] KOG3278 Mitochondrial/chloroplast ribosomal protein L28   330   2e-90
SPBC14C8.10 [J] KOG3278 Mitochondrial/chloroplast ribosomal prot...    79   5e-15
At4g31460 [J] KOG3278 Mitochondrial/chloroplast ribosomal protei...    65   9e-11

>YMR193w [J] KOG3278 Mitochondrial/chloroplast ribosomal protein L28
          Length = 258

 Score =  330 bits (845), Expect = 2e-90
 Identities = 155/247 (62%), Positives = 200/247 (80%)

Query: 9   RGFSTLSHLLREWRLVESRQIPTPKTYQVGDSKPLYIPKEKKEFPDYPYGESPIYKQSNK 68
           RGF++     R+WRL+E+R+I     YQVGD+KPL++PKE+K+FPDY YGES I+KQSNK
Sbjct: 12  RGFTSSVKNFRQWRLIETRKIAKQPNYQVGDAKPLHMPKERKKFPDYKYGESNIFKQSNK 71

Query: 69  GLYGASFIQFGNNIAESKTKTRRSWSPNVIRKGLWSETLNRKISIKMTAKVLRTITKEGG 128
           GLYG SF+QFGNNI+ESK KTR+ W PNV++KGLWSETLNRKISIKMTAKVL+TI+KEGG
Sbjct: 72  GLYGGSFVQFGNNISESKAKTRKKWLPNVVKKGLWSETLNRKISIKMTAKVLKTISKEGG 131

Query: 129 IDNYLTKEKAARIKELGPTGWKLRYRLLNSKEKAANPVHKDAETVTDANGNEVTVLYKVV 188
           IDNYLTKEK+ARIKELGPTGWKLRYR+L  K++  NP HKDA  +  A G +  + Y  +
Sbjct: 132 IDNYLTKEKSARIKELGPTGWKLRYRVLKRKDEIENPPHKDAPIIEMAGGKKAKIYYDEI 191

Query: 189 VDGEPLRITAGKRKLLHTLFPLEKMEHKADGLDLSFKKFMDQFATRDVADIVSRLKALNF 248
           V+G P +I+ G+R+L+  L+PLEK+E+++ G DL++KKF++ FA   V DI++RL+   F
Sbjct: 192 VNGSPRKISVGRRRLMSFLYPLEKLEYRSVGKDLNYKKFVELFADVPVKDILARLEDHKF 251

Query: 249 DLSTITV 255
           DLSTITV
Sbjct: 252 DLSTITV 258


>SPBC14C8.10 [J] KOG3278 Mitochondrial/chloroplast ribosomal protein L28
          Length = 176

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 51/126 (40%), Positives = 71/126 (55%), Gaps = 5/126 (3%)

Query: 63  YKQSNKGLYGASFIQFGNN-IAESKTKTRRSWSPNVIRKGLWSETLNRKISIKMTAKVLR 121
           + +  + LYG S  + GNN I +   KTRR W PN   K L+S  L  K  + +T++VLR
Sbjct: 24  FSKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLR 83

Query: 122 TITKEGGIDNYLTKEKAARIKELGPTGWKLRYRLLNSKEKAANPVHKDAETVTDANGNEV 181
           TI KEGG+D YL K   +R+K LG  G +LR  +L+ K  A NP+    E +   +G + 
Sbjct: 84  TIDKEGGLDEYLVKSTPSRLKSLGLRGVELRALVLH-KLGAKNPI---LEKLPSDSGAQK 139

Query: 182 TVLYKV 187
             L KV
Sbjct: 140 RYLEKV 145


>At4g31460 [J] KOG3278 Mitochondrial/chloroplast ribosomal protein L28
          Length = 212

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 39/103 (37%), Positives = 52/103 (49%), Gaps = 5/103 (4%)

Query: 65  QSNKGLYGASFIQFGNNIAESK-TKTRRSWSPNVIRKGLWSETLNRKISIKMTAKVLRTI 123
           ++ +GLY    IQ+GN ++E    K+RR W PNV  K L+S   +  I +K+T   LR I
Sbjct: 42  RAKRGLYAGRHIQYGNRVSEDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCI 101

Query: 124 TKEGGIDNYLTKEKAARIKELGPTGWK----LRYRLLNSKEKA 162
            K GGID YL K    ++       WK     RY  L   E A
Sbjct: 102 DKAGGIDEYLLKTPYQKMDTEMGLYWKTKVEARYAELGQMEVA 144


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,505,553
Number of Sequences: 60738
Number of extensions: 674634
Number of successful extensions: 1657
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1653
Number of HSP's gapped (non-prelim): 3
length of query: 255
length of database: 30,389,216
effective HSP length: 104
effective length of query: 151
effective length of database: 24,072,464
effective search space: 3634942064
effective search space used: 3634942064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)