ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIV3245 good J KOG1740 Translation, ribosomal structure and biogenesis Predicted mitochondrial/chloroplast ribosomal protein S17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIV3245 1092471 1093166 232
(232 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR188c [J] KOG1740 Predicted mitochondrial/chloroplast ribosoma... 234 8e-62
At1g49400 [J] KOG1740 Predicted mitochondrial/chloroplast riboso... 54 1e-07
At3g18880 [J] KOG1740 Predicted mitochondrial/chloroplast riboso... 49 5e-06
>YMR188c [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein
S17
Length = 237
Score = 234 bits (597), Expect = 8e-62
Identities = 120/213 (56%), Positives = 157/213 (73%), Gaps = 4/213 (1%)
Query: 1 MARQNFIGMVISQGKMQKTVKVRVETKVFDKRINKELFHRKDYLVHDESEVSREGDLVRI 60
MARQNF+G+V+SQGKMQKTVKVRVETKVF+K+INKELFHR+DYLVHDE E+SREGDLVRI
Sbjct: 1 MARQNFLGLVVSQGKMQKTVKVRVETKVFNKKINKELFHRRDYLVHDEGEISREGDLVRI 60
Query: 61 EATRPLSKRKFFSVAEIIRNKGQQFALFQEQAKINVASEENEKTKAFLER---RERKQGV 117
EATRPLSKRKFF++AEIIRNKGQQFAL++ +A+++VA EE +K K FL++ RE K
Sbjct: 61 EATRPLSKRKFFAIAEIIRNKGQQFALYESEAQLSVAKEEAQKAKEFLDKRSVRENKLNE 120
Query: 118 ESTLLNDVRVLQKAYTDGTEDSAAVKEIKSRYGIDKFSPESXXXXXXXXXXXXETQVKQQ 177
++TLL D+R +Q A + G+ + EIK RYGI FS E+ E +++Q
Sbjct: 121 KTTLLRDIRTIQDALSSGSTPKELL-EIKQRYGIQDFSQETVRQLLQLDISGLEVNLEKQ 179
Query: 178 QQKIDAITEKLAEYTKNESLANEFLLSKGLENP 210
+ ID I +L+E N+ ++FL G+E+P
Sbjct: 180 RSLIDRIQTRLSELLSNDLKCDQFLKDHGVEDP 212
>At1g49400 [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein
S17
Length = 116
Score = 54.3 bits (129), Expect = 1e-07
Identities = 29/73 (39%), Positives = 45/73 (60%), Gaps = 1/73 (1%)
Query: 7 IGMVISQGKMQKTVKVRVETKVFDKRINKELFHRKDYLVHDESEVSREGDLVRIEATRPL 66
IG V+S KMQK+V V V+ +K N+ + ++ HD+ + GD V+++ +RPL
Sbjct: 5 IGTVVSN-KMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPSRPL 63
Query: 67 SKRKFFSVAEIIR 79
SK K + VAEII+
Sbjct: 64 SKNKHWIVAEIIK 76
>At3g18880 [J] KOG1740 Predicted mitochondrial/chloroplast ribosomal protein
S17
Length = 105
Score = 49.3 bits (116), Expect = 5e-06
Identities = 27/73 (36%), Positives = 43/73 (57%), Gaps = 1/73 (1%)
Query: 7 IGMVISQGKMQKTVKVRVETKVFDKRINKELFHRKDYLVHDESEVSREGDLVRIEATRPL 66
IG V+S KMQ +V V V+ + N+ + ++ HDE + GD V+++ +RPL
Sbjct: 5 IGTVVSN-KMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPSRPL 63
Query: 67 SKRKFFSVAEIIR 79
SK K + V+EII+
Sbjct: 64 SKHKHWIVSEIIK 76
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.129 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,265,319
Number of Sequences: 60738
Number of extensions: 364413
Number of successful extensions: 1098
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 3
length of query: 232
length of database: 30,389,216
effective HSP length: 103
effective length of query: 129
effective length of database: 24,133,202
effective search space: 3113183058
effective search space used: 3113183058
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)